Multiple sequence alignment - TraesCS1A01G104600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G104600 chr1A 100.000 3393 0 0 1 3393 100292127 100288735 0.000000e+00 6266.0
1 TraesCS1A01G104600 chr1A 81.944 144 16 5 3011 3153 543412775 543412641 2.770000e-21 113.0
2 TraesCS1A01G104600 chr1B 92.178 2135 113 24 419 2540 136647030 136644937 0.000000e+00 2968.0
3 TraesCS1A01G104600 chr1B 90.464 388 34 3 1 386 136647510 136647124 3.020000e-140 508.0
4 TraesCS1A01G104600 chr1B 79.940 663 65 29 2539 3153 612917640 612916998 3.130000e-115 425.0
5 TraesCS1A01G104600 chr1D 91.409 2037 135 24 383 2398 83721590 83719573 0.000000e+00 2756.0
6 TraesCS1A01G104600 chr1D 84.255 235 28 4 228 462 83721951 83721726 1.580000e-53 220.0
7 TraesCS1A01G104600 chr1D 92.063 126 7 3 2397 2522 83718025 83717903 1.250000e-39 174.0
8 TraesCS1A01G104600 chr4B 83.937 1768 208 35 630 2390 514506253 514504555 0.000000e+00 1622.0
9 TraesCS1A01G104600 chr4A 82.660 1782 201 59 616 2390 46616700 46618380 0.000000e+00 1480.0
10 TraesCS1A01G104600 chr4A 87.500 64 5 2 139 202 581485481 581485421 1.690000e-08 71.3
11 TraesCS1A01G104600 chr4D 83.969 1154 143 18 616 1762 418246256 418245138 0.000000e+00 1068.0
12 TraesCS1A01G104600 chr4D 84.772 637 62 17 1758 2390 418244194 418243589 1.040000e-169 606.0
13 TraesCS1A01G104600 chr6D 95.056 627 17 7 2534 3150 465579537 465580159 0.000000e+00 974.0
14 TraesCS1A01G104600 chr6D 84.821 448 41 16 2726 3150 102848896 102849339 3.130000e-115 425.0
15 TraesCS1A01G104600 chr6D 83.582 67 8 3 2555 2619 16805140 16805075 3.660000e-05 60.2
16 TraesCS1A01G104600 chr6A 85.466 633 60 19 2539 3153 144701146 144700528 6.180000e-177 630.0
17 TraesCS1A01G104600 chr3D 84.237 590 55 22 2576 3150 523563946 523564512 1.070000e-149 540.0
18 TraesCS1A01G104600 chr2B 85.865 474 40 16 2539 2987 516729016 516729487 2.370000e-131 479.0
19 TraesCS1A01G104600 chr2B 84.524 336 23 17 2793 3117 66782659 66782976 4.250000e-79 305.0
20 TraesCS1A01G104600 chr2B 86.957 138 12 5 3013 3150 516729578 516729709 2.110000e-32 150.0
21 TraesCS1A01G104600 chr2D 87.335 379 27 8 2787 3153 186801425 186801056 6.770000e-112 414.0
22 TraesCS1A01G104600 chr2D 88.627 255 19 10 2540 2791 186801793 186801546 5.500000e-78 302.0
23 TraesCS1A01G104600 chr3B 85.246 366 33 12 2539 2888 24382121 24382481 1.160000e-94 357.0
24 TraesCS1A01G104600 chr3B 82.394 284 30 9 2879 3150 24382498 24382773 2.630000e-56 230.0
25 TraesCS1A01G104600 chr5A 83.761 117 11 6 3036 3150 45927341 45927451 1.670000e-18 104.0
26 TraesCS1A01G104600 chr2A 82.759 116 13 4 3036 3150 13426633 13426742 2.790000e-16 97.1
27 TraesCS1A01G104600 chr3A 87.342 79 6 3 3079 3153 725350523 725350445 1.680000e-13 87.9
28 TraesCS1A01G104600 chr6B 83.582 67 10 1 2555 2620 29782170 29782104 1.020000e-05 62.1
29 TraesCS1A01G104600 chr7A 97.222 36 0 1 165 200 250682048 250682082 3.660000e-05 60.2
30 TraesCS1A01G104600 chr7D 94.444 36 1 1 165 200 235574318 235574352 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G104600 chr1A 100288735 100292127 3392 True 6266.0 6266 100.000000 1 3393 1 chr1A.!!$R1 3392
1 TraesCS1A01G104600 chr1B 136644937 136647510 2573 True 1738.0 2968 91.321000 1 2540 2 chr1B.!!$R2 2539
2 TraesCS1A01G104600 chr1B 612916998 612917640 642 True 425.0 425 79.940000 2539 3153 1 chr1B.!!$R1 614
3 TraesCS1A01G104600 chr1D 83717903 83721951 4048 True 1050.0 2756 89.242333 228 2522 3 chr1D.!!$R1 2294
4 TraesCS1A01G104600 chr4B 514504555 514506253 1698 True 1622.0 1622 83.937000 630 2390 1 chr4B.!!$R1 1760
5 TraesCS1A01G104600 chr4A 46616700 46618380 1680 False 1480.0 1480 82.660000 616 2390 1 chr4A.!!$F1 1774
6 TraesCS1A01G104600 chr4D 418243589 418246256 2667 True 837.0 1068 84.370500 616 2390 2 chr4D.!!$R1 1774
7 TraesCS1A01G104600 chr6D 465579537 465580159 622 False 974.0 974 95.056000 2534 3150 1 chr6D.!!$F2 616
8 TraesCS1A01G104600 chr6A 144700528 144701146 618 True 630.0 630 85.466000 2539 3153 1 chr6A.!!$R1 614
9 TraesCS1A01G104600 chr3D 523563946 523564512 566 False 540.0 540 84.237000 2576 3150 1 chr3D.!!$F1 574
10 TraesCS1A01G104600 chr2B 516729016 516729709 693 False 314.5 479 86.411000 2539 3150 2 chr2B.!!$F2 611
11 TraesCS1A01G104600 chr2D 186801056 186801793 737 True 358.0 414 87.981000 2540 3153 2 chr2D.!!$R1 613
12 TraesCS1A01G104600 chr3B 24382121 24382773 652 False 293.5 357 83.820000 2539 3150 2 chr3B.!!$F1 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
663 956 0.109132 GGTGCATGCTAAGGTTGTGC 60.109 55.0 20.33 0.00 36.39 4.57 F
1023 1326 0.803740 GAAGCAAGCAAGCAGAGGAG 59.196 55.0 3.19 0.00 36.85 3.69 F
1488 1805 1.424493 GCATCGAGAAGCGGTTCCAG 61.424 60.0 22.91 16.83 41.33 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 2039 0.110104 CATCCAAGGCCAGGATCCTC 59.890 60.0 22.88 0.74 43.90 3.71 R
2361 3634 0.113190 CTTGCTTGGACCCTTTCCCT 59.887 55.0 0.00 0.00 45.17 4.20 R
3314 6429 0.035739 ATGGTTAGGTTTCGTGCGGT 59.964 50.0 0.00 0.00 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.455360 TCAGGCAATTTTAGTGATGGAATC 57.545 37.500 0.00 0.00 45.83 2.52
61 62 8.539544 TGGAATCAACAAATAGTCAGTATCAGA 58.460 33.333 0.00 0.00 0.00 3.27
62 63 9.553064 GGAATCAACAAATAGTCAGTATCAGAT 57.447 33.333 0.00 0.00 0.00 2.90
94 95 2.762887 CTGGACTCCTGACAGCATCTAA 59.237 50.000 0.00 0.00 0.00 2.10
131 132 4.436242 TTGCTTCACTAGTACTCCTTCG 57.564 45.455 0.00 0.00 0.00 3.79
143 144 9.247861 ACTAGTACTCCTTCGGTTTCTAAATAA 57.752 33.333 0.00 0.00 0.00 1.40
149 150 8.727910 ACTCCTTCGGTTTCTAAATAATTGAAC 58.272 33.333 0.00 0.00 0.00 3.18
177 178 9.010029 TCTAGTGTTTTTCAAAGTCAAACTTCT 57.990 29.630 0.00 0.00 37.47 2.85
178 179 9.626045 CTAGTGTTTTTCAAAGTCAAACTTCTT 57.374 29.630 0.00 0.00 37.47 2.52
226 227 6.782494 ACTTTAATCATTTTGGAACAGAGGGT 59.218 34.615 0.00 0.00 42.39 4.34
294 296 8.986477 AACATAAACTTCCATGCTTTATTGTC 57.014 30.769 0.00 0.00 0.00 3.18
307 309 5.427157 TGCTTTATTGTCCCCTAGTATGTCA 59.573 40.000 0.00 0.00 0.00 3.58
312 314 2.504175 TGTCCCCTAGTATGTCAAAGGC 59.496 50.000 0.00 0.00 0.00 4.35
313 315 1.760613 TCCCCTAGTATGTCAAAGGCG 59.239 52.381 0.00 0.00 0.00 5.52
352 355 9.809096 CACACTACATAATAGGCCATCTAATAG 57.191 37.037 5.01 0.72 0.00 1.73
353 356 8.982723 ACACTACATAATAGGCCATCTAATAGG 58.017 37.037 5.01 0.00 0.00 2.57
393 427 9.500864 GCTTCACTAGTACTTTACTGTACATAC 57.499 37.037 0.00 0.00 43.65 2.39
415 664 5.879237 ACCATTACATAGTTTGAATGCACG 58.121 37.500 0.00 0.00 0.00 5.34
417 666 6.183360 ACCATTACATAGTTTGAATGCACGAG 60.183 38.462 0.00 0.00 0.00 4.18
431 680 4.990543 TGCACGAGAAGTTTCAACATAG 57.009 40.909 0.00 0.00 0.00 2.23
434 683 5.525745 TGCACGAGAAGTTTCAACATAGAAA 59.474 36.000 0.00 0.00 35.28 2.52
480 765 1.269831 GCATACGCAAACAACCCCAAA 60.270 47.619 0.00 0.00 38.36 3.28
484 769 1.285578 CGCAAACAACCCCAAAACAG 58.714 50.000 0.00 0.00 0.00 3.16
499 784 4.081862 CCAAAACAGCAATCTGGACATCAT 60.082 41.667 0.00 0.00 44.54 2.45
565 856 3.557595 GCTGGTAGCTAGCAACTAACATG 59.442 47.826 24.70 12.52 36.75 3.21
582 875 8.291191 ACTAACATGTACTACTAGGAAAGGTC 57.709 38.462 0.00 0.00 0.00 3.85
585 878 6.491383 ACATGTACTACTAGGAAAGGTCTCA 58.509 40.000 0.00 0.00 0.00 3.27
626 919 5.615581 CGATCTTGTACACTTCAAACAAACG 59.384 40.000 0.00 0.00 33.05 3.60
658 951 2.048444 CATCTGGTGCATGCTAAGGT 57.952 50.000 20.33 7.02 0.00 3.50
659 952 2.372264 CATCTGGTGCATGCTAAGGTT 58.628 47.619 20.33 2.93 0.00 3.50
660 953 1.825090 TCTGGTGCATGCTAAGGTTG 58.175 50.000 20.33 3.01 0.00 3.77
663 956 0.109132 GGTGCATGCTAAGGTTGTGC 60.109 55.000 20.33 0.00 36.39 4.57
664 957 0.883833 GTGCATGCTAAGGTTGTGCT 59.116 50.000 20.33 0.00 36.78 4.40
665 958 1.270550 GTGCATGCTAAGGTTGTGCTT 59.729 47.619 20.33 0.00 36.78 3.91
666 959 1.962807 TGCATGCTAAGGTTGTGCTTT 59.037 42.857 20.33 0.00 36.78 3.51
667 960 2.030007 TGCATGCTAAGGTTGTGCTTTC 60.030 45.455 20.33 0.00 36.78 2.62
694 987 4.818546 TCCTCTCTCAAGCAAGAAACAAAG 59.181 41.667 0.00 0.00 0.00 2.77
695 988 4.578105 CCTCTCTCAAGCAAGAAACAAAGT 59.422 41.667 0.00 0.00 0.00 2.66
699 992 7.865707 TCTCTCAAGCAAGAAACAAAGTAATC 58.134 34.615 0.00 0.00 0.00 1.75
774 1067 8.967218 CAACTCCAACAGTTAATGTGTTTAATG 58.033 33.333 3.96 0.00 44.14 1.90
800 1096 3.250762 TCAAATCACACGGAAGAAGCAAG 59.749 43.478 0.00 0.00 0.00 4.01
960 1263 7.039363 CCAGCCAGATATTACTACTAAAGAGCT 60.039 40.741 0.00 0.00 0.00 4.09
992 1295 3.376546 GGAGACTGCAGGAATGATGAAAC 59.623 47.826 19.93 0.00 0.00 2.78
1023 1326 0.803740 GAAGCAAGCAAGCAGAGGAG 59.196 55.000 3.19 0.00 36.85 3.69
1197 1511 5.064452 CGGTTTGAGATTGATTCAAGGAGAG 59.936 44.000 5.21 0.00 36.07 3.20
1279 1593 4.473520 CCTACAGCACCGGCAGGG 62.474 72.222 8.08 0.00 44.61 4.45
1381 1695 1.967319 TTCAGTCAACAACCAGAGGC 58.033 50.000 0.00 0.00 0.00 4.70
1488 1805 1.424493 GCATCGAGAAGCGGTTCCAG 61.424 60.000 22.91 16.83 41.33 3.86
1516 1833 3.708220 GACGCGAAGGAGCAGGAGG 62.708 68.421 15.93 0.00 36.85 4.30
1683 2000 2.421619 CAGAGCAAGTTCAGGAAGGTC 58.578 52.381 0.00 0.00 0.00 3.85
1762 2079 4.247380 GGGAGGCAGAGATGGCGG 62.247 72.222 0.00 0.00 39.53 6.13
1814 3079 2.637947 GGAGATGAAGGAGCTGGTTTC 58.362 52.381 0.00 0.00 0.00 2.78
1857 3122 4.438472 GGAACAGACAGTGAGGTACGTATC 60.438 50.000 0.00 0.00 0.00 2.24
1882 3147 2.400399 TCTTCGCTTCGTCGACATTTT 58.600 42.857 17.16 0.00 38.30 1.82
1883 3148 2.798283 TCTTCGCTTCGTCGACATTTTT 59.202 40.909 17.16 0.00 38.30 1.94
1884 3149 3.982701 TCTTCGCTTCGTCGACATTTTTA 59.017 39.130 17.16 0.00 38.30 1.52
1906 3175 4.651778 ACTTCCATTTCCGTCTGATCAAA 58.348 39.130 0.00 0.00 0.00 2.69
1907 3176 4.697352 ACTTCCATTTCCGTCTGATCAAAG 59.303 41.667 0.00 0.00 0.00 2.77
1908 3177 3.609853 TCCATTTCCGTCTGATCAAAGG 58.390 45.455 0.00 0.44 0.00 3.11
1909 3178 3.009033 TCCATTTCCGTCTGATCAAAGGT 59.991 43.478 0.00 0.00 0.00 3.50
1910 3179 3.758554 CCATTTCCGTCTGATCAAAGGTT 59.241 43.478 0.00 0.00 0.00 3.50
1922 3194 6.152661 TCTGATCAAAGGTTTTTCTTGTGTGT 59.847 34.615 0.00 0.00 0.00 3.72
2047 3320 2.107953 GCGGACATGGAGGAGCTC 59.892 66.667 4.71 4.71 0.00 4.09
2152 3425 1.515736 GATTGGGGACGACGACGAC 60.516 63.158 15.32 7.84 42.66 4.34
2154 3427 4.986645 TGGGGACGACGACGACGA 62.987 66.667 25.15 0.25 42.66 4.20
2155 3428 3.503363 GGGGACGACGACGACGAT 61.503 66.667 25.15 10.17 42.66 3.73
2156 3429 2.277120 GGGACGACGACGACGATG 60.277 66.667 25.15 8.06 42.66 3.84
2162 3435 4.430765 ACGACGACGATGGCACCC 62.431 66.667 15.32 0.00 42.66 4.61
2326 3599 3.834799 AGGACGGGAATCGGACGC 61.835 66.667 0.00 0.00 44.45 5.19
2361 3634 0.846427 AAGATCAGAGGGTGGGCCAA 60.846 55.000 8.40 0.00 36.17 4.52
2391 3664 0.873054 CCAAGCAAGAGCAGTGAGTG 59.127 55.000 0.00 0.00 45.49 3.51
2561 5382 5.163561 ACAGTGGCGAATTCAGAAAGAAAAA 60.164 36.000 6.22 0.00 40.22 1.94
2677 5524 6.915786 AGCTCCTAATCCTATTGTCCAAATT 58.084 36.000 0.00 0.00 0.00 1.82
2805 5788 9.233649 ACCTAAATAGTCATTATCTCCTAGTCG 57.766 37.037 0.00 0.00 0.00 4.18
2868 5857 6.942576 ACTGGAAACATGAAGTATTTGCTAGT 59.057 34.615 0.00 0.00 41.51 2.57
3156 6271 2.264480 TGGACTCGCCAATGACCG 59.736 61.111 0.00 0.00 45.87 4.79
3157 6272 3.195698 GGACTCGCCAATGACCGC 61.196 66.667 0.00 0.00 36.34 5.68
3158 6273 2.434185 GACTCGCCAATGACCGCA 60.434 61.111 0.00 0.00 0.00 5.69
3159 6274 2.740714 GACTCGCCAATGACCGCAC 61.741 63.158 0.00 0.00 0.00 5.34
3160 6275 2.741985 CTCGCCAATGACCGCACA 60.742 61.111 0.00 0.00 0.00 4.57
3161 6276 3.027170 CTCGCCAATGACCGCACAC 62.027 63.158 0.00 0.00 0.00 3.82
3162 6277 4.101790 CGCCAATGACCGCACACC 62.102 66.667 0.00 0.00 0.00 4.16
3163 6278 3.747976 GCCAATGACCGCACACCC 61.748 66.667 0.00 0.00 0.00 4.61
3164 6279 2.282110 CCAATGACCGCACACCCA 60.282 61.111 0.00 0.00 0.00 4.51
3165 6280 2.625823 CCAATGACCGCACACCCAC 61.626 63.158 0.00 0.00 0.00 4.61
3166 6281 1.896183 CAATGACCGCACACCCACA 60.896 57.895 0.00 0.00 0.00 4.17
3167 6282 1.896660 AATGACCGCACACCCACAC 60.897 57.895 0.00 0.00 0.00 3.82
3168 6283 2.337879 AATGACCGCACACCCACACT 62.338 55.000 0.00 0.00 0.00 3.55
3169 6284 2.665185 GACCGCACACCCACACTC 60.665 66.667 0.00 0.00 0.00 3.51
3170 6285 3.161450 ACCGCACACCCACACTCT 61.161 61.111 0.00 0.00 0.00 3.24
3171 6286 1.812686 GACCGCACACCCACACTCTA 61.813 60.000 0.00 0.00 0.00 2.43
3172 6287 1.374252 CCGCACACCCACACTCTAC 60.374 63.158 0.00 0.00 0.00 2.59
3173 6288 1.365999 CGCACACCCACACTCTACA 59.634 57.895 0.00 0.00 0.00 2.74
3174 6289 0.037326 CGCACACCCACACTCTACAT 60.037 55.000 0.00 0.00 0.00 2.29
3175 6290 1.726853 GCACACCCACACTCTACATC 58.273 55.000 0.00 0.00 0.00 3.06
3176 6291 1.276421 GCACACCCACACTCTACATCT 59.724 52.381 0.00 0.00 0.00 2.90
3177 6292 2.496070 GCACACCCACACTCTACATCTA 59.504 50.000 0.00 0.00 0.00 1.98
3178 6293 3.133003 GCACACCCACACTCTACATCTAT 59.867 47.826 0.00 0.00 0.00 1.98
3179 6294 4.686972 CACACCCACACTCTACATCTATG 58.313 47.826 0.00 0.00 0.00 2.23
3180 6295 4.402474 CACACCCACACTCTACATCTATGA 59.598 45.833 0.00 0.00 0.00 2.15
3181 6296 4.646945 ACACCCACACTCTACATCTATGAG 59.353 45.833 0.00 0.00 0.00 2.90
3182 6297 3.639094 ACCCACACTCTACATCTATGAGC 59.361 47.826 0.00 0.00 0.00 4.26
3183 6298 3.638627 CCCACACTCTACATCTATGAGCA 59.361 47.826 0.00 0.00 0.00 4.26
3184 6299 4.282957 CCCACACTCTACATCTATGAGCAT 59.717 45.833 0.00 0.00 0.00 3.79
3185 6300 5.468592 CCACACTCTACATCTATGAGCATC 58.531 45.833 0.00 0.00 0.00 3.91
3186 6301 5.243507 CCACACTCTACATCTATGAGCATCT 59.756 44.000 0.00 0.00 34.92 2.90
3187 6302 6.380995 CACACTCTACATCTATGAGCATCTC 58.619 44.000 0.00 0.00 34.92 2.75
3188 6303 5.476599 ACACTCTACATCTATGAGCATCTCC 59.523 44.000 0.00 0.00 34.92 3.71
3189 6304 4.699735 ACTCTACATCTATGAGCATCTCCG 59.300 45.833 0.00 0.00 34.92 4.63
3190 6305 4.911390 TCTACATCTATGAGCATCTCCGA 58.089 43.478 0.00 0.00 34.92 4.55
3191 6306 4.940654 TCTACATCTATGAGCATCTCCGAG 59.059 45.833 0.00 0.00 34.92 4.63
3192 6307 3.760738 ACATCTATGAGCATCTCCGAGA 58.239 45.455 0.00 0.00 34.92 4.04
3193 6308 4.343231 ACATCTATGAGCATCTCCGAGAT 58.657 43.478 4.96 4.96 34.74 2.75
3194 6309 5.504853 ACATCTATGAGCATCTCCGAGATA 58.495 41.667 10.65 0.00 32.12 1.98
3195 6310 5.356751 ACATCTATGAGCATCTCCGAGATAC 59.643 44.000 10.65 5.56 32.12 2.24
3196 6311 5.172687 TCTATGAGCATCTCCGAGATACT 57.827 43.478 10.46 10.46 32.12 2.12
3197 6312 4.940654 TCTATGAGCATCTCCGAGATACTG 59.059 45.833 14.80 4.71 32.12 2.74
3198 6313 3.214696 TGAGCATCTCCGAGATACTGA 57.785 47.619 14.80 4.91 32.12 3.41
3199 6314 3.145286 TGAGCATCTCCGAGATACTGAG 58.855 50.000 14.80 2.63 32.12 3.35
3200 6315 1.885887 AGCATCTCCGAGATACTGAGC 59.114 52.381 10.65 9.60 32.12 4.26
3201 6316 1.885887 GCATCTCCGAGATACTGAGCT 59.114 52.381 10.65 0.00 32.12 4.09
3202 6317 3.078097 GCATCTCCGAGATACTGAGCTA 58.922 50.000 10.65 0.00 32.12 3.32
3203 6318 3.504134 GCATCTCCGAGATACTGAGCTAA 59.496 47.826 10.65 0.00 32.12 3.09
3204 6319 4.614993 GCATCTCCGAGATACTGAGCTAAC 60.615 50.000 10.65 0.00 32.12 2.34
3205 6320 4.152284 TCTCCGAGATACTGAGCTAACA 57.848 45.455 0.00 0.00 31.43 2.41
3206 6321 3.878103 TCTCCGAGATACTGAGCTAACAC 59.122 47.826 0.00 0.00 31.43 3.32
3207 6322 3.617284 TCCGAGATACTGAGCTAACACA 58.383 45.455 0.00 0.00 0.00 3.72
3208 6323 4.014406 TCCGAGATACTGAGCTAACACAA 58.986 43.478 0.00 0.00 0.00 3.33
3209 6324 4.106197 CCGAGATACTGAGCTAACACAAC 58.894 47.826 0.00 0.00 0.00 3.32
3210 6325 4.380550 CCGAGATACTGAGCTAACACAACA 60.381 45.833 0.00 0.00 0.00 3.33
3211 6326 5.344066 CGAGATACTGAGCTAACACAACAT 58.656 41.667 0.00 0.00 0.00 2.71
3212 6327 5.457148 CGAGATACTGAGCTAACACAACATC 59.543 44.000 0.00 0.00 0.00 3.06
3213 6328 6.537453 AGATACTGAGCTAACACAACATCT 57.463 37.500 0.00 0.00 0.00 2.90
3214 6329 6.940739 AGATACTGAGCTAACACAACATCTT 58.059 36.000 0.00 0.00 0.00 2.40
3215 6330 8.067751 AGATACTGAGCTAACACAACATCTTA 57.932 34.615 0.00 0.00 0.00 2.10
3216 6331 8.531982 AGATACTGAGCTAACACAACATCTTAA 58.468 33.333 0.00 0.00 0.00 1.85
3217 6332 8.709386 ATACTGAGCTAACACAACATCTTAAG 57.291 34.615 0.00 0.00 0.00 1.85
3218 6333 6.759272 ACTGAGCTAACACAACATCTTAAGA 58.241 36.000 7.82 7.82 0.00 2.10
3219 6334 7.390027 ACTGAGCTAACACAACATCTTAAGAT 58.610 34.615 12.37 12.37 34.56 2.40
3220 6335 7.880195 ACTGAGCTAACACAACATCTTAAGATT 59.120 33.333 15.49 0.10 31.21 2.40
3221 6336 8.256611 TGAGCTAACACAACATCTTAAGATTC 57.743 34.615 15.49 6.80 31.21 2.52
3222 6337 8.097038 TGAGCTAACACAACATCTTAAGATTCT 58.903 33.333 15.49 2.89 31.21 2.40
3223 6338 8.854614 AGCTAACACAACATCTTAAGATTCTT 57.145 30.769 15.49 7.21 31.21 2.52
3224 6339 8.940952 AGCTAACACAACATCTTAAGATTCTTC 58.059 33.333 15.49 0.00 31.21 2.87
3225 6340 8.940952 GCTAACACAACATCTTAAGATTCTTCT 58.059 33.333 15.49 0.76 31.21 2.85
3237 6352 9.923143 TCTTAAGATTCTTCTATTGAACGAACA 57.077 29.630 0.00 0.00 0.00 3.18
3241 6356 7.978982 AGATTCTTCTATTGAACGAACATTGG 58.021 34.615 0.00 0.00 0.00 3.16
3242 6357 5.545658 TCTTCTATTGAACGAACATTGGC 57.454 39.130 0.00 0.00 0.00 4.52
3243 6358 5.000591 TCTTCTATTGAACGAACATTGGCA 58.999 37.500 0.00 0.00 0.00 4.92
3244 6359 4.944962 TCTATTGAACGAACATTGGCAG 57.055 40.909 0.00 0.00 0.00 4.85
3245 6360 4.574892 TCTATTGAACGAACATTGGCAGA 58.425 39.130 0.00 0.00 0.00 4.26
3246 6361 5.000591 TCTATTGAACGAACATTGGCAGAA 58.999 37.500 0.00 0.00 0.00 3.02
3247 6362 3.624326 TTGAACGAACATTGGCAGAAG 57.376 42.857 0.00 0.00 0.00 2.85
3248 6363 1.879380 TGAACGAACATTGGCAGAAGG 59.121 47.619 0.00 0.00 0.00 3.46
3249 6364 1.200020 GAACGAACATTGGCAGAAGGG 59.800 52.381 0.00 0.00 0.00 3.95
3250 6365 0.110486 ACGAACATTGGCAGAAGGGT 59.890 50.000 0.00 0.00 0.00 4.34
3251 6366 1.247567 CGAACATTGGCAGAAGGGTT 58.752 50.000 0.00 0.00 0.00 4.11
3252 6367 2.224670 ACGAACATTGGCAGAAGGGTTA 60.225 45.455 0.00 0.00 0.00 2.85
3253 6368 2.817258 CGAACATTGGCAGAAGGGTTAA 59.183 45.455 0.00 0.00 0.00 2.01
3254 6369 3.254657 CGAACATTGGCAGAAGGGTTAAA 59.745 43.478 0.00 0.00 0.00 1.52
3255 6370 4.261825 CGAACATTGGCAGAAGGGTTAAAA 60.262 41.667 0.00 0.00 0.00 1.52
3256 6371 5.566627 CGAACATTGGCAGAAGGGTTAAAAT 60.567 40.000 0.00 0.00 0.00 1.82
3257 6372 6.349777 CGAACATTGGCAGAAGGGTTAAAATA 60.350 38.462 0.00 0.00 0.00 1.40
3258 6373 6.926630 ACATTGGCAGAAGGGTTAAAATAA 57.073 33.333 0.00 0.00 0.00 1.40
3259 6374 7.309770 ACATTGGCAGAAGGGTTAAAATAAA 57.690 32.000 0.00 0.00 0.00 1.40
3260 6375 7.917003 ACATTGGCAGAAGGGTTAAAATAAAT 58.083 30.769 0.00 0.00 0.00 1.40
3261 6376 8.040727 ACATTGGCAGAAGGGTTAAAATAAATC 58.959 33.333 0.00 0.00 0.00 2.17
3262 6377 7.790782 TTGGCAGAAGGGTTAAAATAAATCT 57.209 32.000 0.00 0.00 0.00 2.40
3263 6378 8.887264 TTGGCAGAAGGGTTAAAATAAATCTA 57.113 30.769 0.00 0.00 0.00 1.98
3264 6379 8.519799 TGGCAGAAGGGTTAAAATAAATCTAG 57.480 34.615 0.00 0.00 0.00 2.43
3265 6380 7.559897 TGGCAGAAGGGTTAAAATAAATCTAGG 59.440 37.037 0.00 0.00 0.00 3.02
3266 6381 7.778382 GGCAGAAGGGTTAAAATAAATCTAGGA 59.222 37.037 0.00 0.00 0.00 2.94
3267 6382 9.185680 GCAGAAGGGTTAAAATAAATCTAGGAA 57.814 33.333 0.00 0.00 0.00 3.36
3277 6392 8.986477 AAAATAAATCTAGGAAATGTGTGCAC 57.014 30.769 10.75 10.75 0.00 4.57
3278 6393 7.944729 AATAAATCTAGGAAATGTGTGCACT 57.055 32.000 19.41 0.00 0.00 4.40
3279 6394 9.461312 AAATAAATCTAGGAAATGTGTGCACTA 57.539 29.630 19.41 7.65 0.00 2.74
3280 6395 6.992063 AAATCTAGGAAATGTGTGCACTAG 57.008 37.500 19.41 8.66 0.00 2.57
3281 6396 5.683876 ATCTAGGAAATGTGTGCACTAGT 57.316 39.130 19.41 3.48 32.07 2.57
3282 6397 4.820897 TCTAGGAAATGTGTGCACTAGTG 58.179 43.478 18.93 18.93 32.07 2.74
3294 6409 2.656560 CACTAGTGCCAGTGTAGGAC 57.343 55.000 10.54 0.00 40.89 3.85
3295 6410 1.204941 CACTAGTGCCAGTGTAGGACC 59.795 57.143 10.54 0.00 40.89 4.46
3296 6411 1.077334 ACTAGTGCCAGTGTAGGACCT 59.923 52.381 0.00 0.00 0.00 3.85
3297 6412 2.310945 ACTAGTGCCAGTGTAGGACCTA 59.689 50.000 0.00 0.00 0.00 3.08
3298 6413 2.320681 AGTGCCAGTGTAGGACCTAA 57.679 50.000 1.75 0.00 0.00 2.69
3299 6414 2.616524 AGTGCCAGTGTAGGACCTAAA 58.383 47.619 1.75 0.00 0.00 1.85
3300 6415 2.302157 AGTGCCAGTGTAGGACCTAAAC 59.698 50.000 13.39 13.39 0.00 2.01
3301 6416 2.302157 GTGCCAGTGTAGGACCTAAACT 59.698 50.000 17.54 17.54 35.12 2.66
3302 6417 2.565834 TGCCAGTGTAGGACCTAAACTC 59.434 50.000 20.02 11.52 32.70 3.01
3303 6418 2.832733 GCCAGTGTAGGACCTAAACTCT 59.167 50.000 20.02 7.21 32.70 3.24
3304 6419 3.368531 GCCAGTGTAGGACCTAAACTCTG 60.369 52.174 20.02 17.31 32.70 3.35
3305 6420 3.195825 CCAGTGTAGGACCTAAACTCTGG 59.804 52.174 20.02 21.42 44.07 3.86
3306 6421 3.833070 CAGTGTAGGACCTAAACTCTGGT 59.167 47.826 20.02 0.00 32.70 4.00
3307 6422 3.833070 AGTGTAGGACCTAAACTCTGGTG 59.167 47.826 17.54 0.00 29.27 4.17
3308 6423 3.056035 GTGTAGGACCTAAACTCTGGTGG 60.056 52.174 13.91 0.00 36.59 4.61
3309 6424 1.657804 AGGACCTAAACTCTGGTGGG 58.342 55.000 0.00 0.00 36.59 4.61
3310 6425 1.132495 AGGACCTAAACTCTGGTGGGT 60.132 52.381 0.00 0.00 36.59 4.51
3311 6426 1.703513 GGACCTAAACTCTGGTGGGTT 59.296 52.381 0.00 0.00 36.59 4.11
3312 6427 2.107726 GGACCTAAACTCTGGTGGGTTT 59.892 50.000 0.00 0.00 36.59 3.27
3313 6428 3.409570 GACCTAAACTCTGGTGGGTTTC 58.590 50.000 0.00 0.00 36.59 2.78
3314 6429 2.781174 ACCTAAACTCTGGTGGGTTTCA 59.219 45.455 0.00 0.00 37.01 2.69
3315 6430 3.146847 CCTAAACTCTGGTGGGTTTCAC 58.853 50.000 0.00 0.00 45.34 3.18
3322 6437 2.589442 GTGGGTTTCACCGCACGA 60.589 61.111 0.00 0.00 39.83 4.35
3323 6438 2.181521 GTGGGTTTCACCGCACGAA 61.182 57.895 0.00 0.00 39.83 3.85
3324 6439 1.451567 TGGGTTTCACCGCACGAAA 60.452 52.632 0.00 0.00 39.83 3.46
3326 6441 4.601315 GTTTCACCGCACGAAACC 57.399 55.556 10.14 0.00 44.14 3.27
3327 6442 2.019337 GTTTCACCGCACGAAACCT 58.981 52.632 10.14 0.00 44.14 3.50
3328 6443 1.219646 GTTTCACCGCACGAAACCTA 58.780 50.000 10.14 0.00 44.14 3.08
3329 6444 1.598601 GTTTCACCGCACGAAACCTAA 59.401 47.619 10.14 0.00 44.14 2.69
3330 6445 1.219646 TTCACCGCACGAAACCTAAC 58.780 50.000 0.00 0.00 0.00 2.34
3331 6446 0.600782 TCACCGCACGAAACCTAACC 60.601 55.000 0.00 0.00 0.00 2.85
3332 6447 0.881159 CACCGCACGAAACCTAACCA 60.881 55.000 0.00 0.00 0.00 3.67
3333 6448 0.035739 ACCGCACGAAACCTAACCAT 59.964 50.000 0.00 0.00 0.00 3.55
3334 6449 0.725117 CCGCACGAAACCTAACCATC 59.275 55.000 0.00 0.00 0.00 3.51
3335 6450 0.725117 CGCACGAAACCTAACCATCC 59.275 55.000 0.00 0.00 0.00 3.51
3336 6451 0.725117 GCACGAAACCTAACCATCCG 59.275 55.000 0.00 0.00 0.00 4.18
3337 6452 1.673626 GCACGAAACCTAACCATCCGA 60.674 52.381 0.00 0.00 0.00 4.55
3338 6453 2.268298 CACGAAACCTAACCATCCGAG 58.732 52.381 0.00 0.00 0.00 4.63
3339 6454 1.287425 CGAAACCTAACCATCCGAGC 58.713 55.000 0.00 0.00 0.00 5.03
3340 6455 1.134788 CGAAACCTAACCATCCGAGCT 60.135 52.381 0.00 0.00 0.00 4.09
3341 6456 2.100252 CGAAACCTAACCATCCGAGCTA 59.900 50.000 0.00 0.00 0.00 3.32
3342 6457 3.455327 GAAACCTAACCATCCGAGCTAC 58.545 50.000 0.00 0.00 0.00 3.58
3343 6458 2.154567 ACCTAACCATCCGAGCTACA 57.845 50.000 0.00 0.00 0.00 2.74
3344 6459 2.032620 ACCTAACCATCCGAGCTACAG 58.967 52.381 0.00 0.00 0.00 2.74
3345 6460 2.032620 CCTAACCATCCGAGCTACAGT 58.967 52.381 0.00 0.00 0.00 3.55
3346 6461 2.431057 CCTAACCATCCGAGCTACAGTT 59.569 50.000 0.00 0.00 0.00 3.16
3347 6462 3.118738 CCTAACCATCCGAGCTACAGTTT 60.119 47.826 0.00 0.00 0.00 2.66
3348 6463 2.386661 ACCATCCGAGCTACAGTTTG 57.613 50.000 0.00 0.00 0.00 2.93
3349 6464 1.009829 CCATCCGAGCTACAGTTTGC 58.990 55.000 0.00 0.00 0.00 3.68
3350 6465 1.675714 CCATCCGAGCTACAGTTTGCA 60.676 52.381 0.00 0.00 0.00 4.08
3351 6466 2.283298 CATCCGAGCTACAGTTTGCAT 58.717 47.619 0.00 0.00 0.00 3.96
3352 6467 3.457234 CATCCGAGCTACAGTTTGCATA 58.543 45.455 0.00 0.00 0.00 3.14
3353 6468 2.888594 TCCGAGCTACAGTTTGCATAC 58.111 47.619 0.00 0.00 0.00 2.39
3354 6469 1.588404 CCGAGCTACAGTTTGCATACG 59.412 52.381 1.44 0.36 0.00 3.06
3355 6470 2.526077 CGAGCTACAGTTTGCATACGA 58.474 47.619 1.44 0.00 0.00 3.43
3356 6471 3.116300 CGAGCTACAGTTTGCATACGAT 58.884 45.455 1.44 0.00 0.00 3.73
3357 6472 3.060940 CGAGCTACAGTTTGCATACGATG 60.061 47.826 1.44 0.00 0.00 3.84
3358 6473 3.861840 AGCTACAGTTTGCATACGATGT 58.138 40.909 7.22 7.22 0.00 3.06
3359 6474 4.253685 AGCTACAGTTTGCATACGATGTT 58.746 39.130 7.33 0.00 0.00 2.71
3360 6475 4.093408 AGCTACAGTTTGCATACGATGTTG 59.907 41.667 7.33 6.99 0.00 3.33
3361 6476 3.829886 ACAGTTTGCATACGATGTTGG 57.170 42.857 1.44 0.00 0.00 3.77
3362 6477 3.407698 ACAGTTTGCATACGATGTTGGA 58.592 40.909 1.44 0.00 0.00 3.53
3363 6478 4.009675 ACAGTTTGCATACGATGTTGGAT 58.990 39.130 1.44 0.00 0.00 3.41
3364 6479 5.182487 ACAGTTTGCATACGATGTTGGATA 58.818 37.500 1.44 0.00 0.00 2.59
3365 6480 5.064707 ACAGTTTGCATACGATGTTGGATAC 59.935 40.000 1.44 0.00 0.00 2.24
3366 6481 4.574828 AGTTTGCATACGATGTTGGATACC 59.425 41.667 1.44 0.00 0.00 2.73
3367 6482 3.828875 TGCATACGATGTTGGATACCA 57.171 42.857 0.00 0.00 0.00 3.25
3368 6483 4.350368 TGCATACGATGTTGGATACCAT 57.650 40.909 0.00 0.00 31.53 3.55
3369 6484 4.064388 TGCATACGATGTTGGATACCATG 58.936 43.478 0.00 0.00 31.53 3.66
3370 6485 4.202305 TGCATACGATGTTGGATACCATGA 60.202 41.667 0.00 0.00 31.53 3.07
3371 6486 4.152402 GCATACGATGTTGGATACCATGAC 59.848 45.833 0.00 0.00 31.53 3.06
3372 6487 5.541845 CATACGATGTTGGATACCATGACT 58.458 41.667 0.00 0.00 31.53 3.41
3373 6488 6.687604 CATACGATGTTGGATACCATGACTA 58.312 40.000 0.00 0.00 31.53 2.59
3374 6489 5.201713 ACGATGTTGGATACCATGACTAG 57.798 43.478 0.00 0.00 31.53 2.57
3375 6490 4.649674 ACGATGTTGGATACCATGACTAGT 59.350 41.667 0.00 0.00 31.53 2.57
3376 6491 4.984785 CGATGTTGGATACCATGACTAGTG 59.015 45.833 0.00 0.00 31.53 2.74
3377 6492 4.137116 TGTTGGATACCATGACTAGTGC 57.863 45.455 0.00 0.00 31.53 4.40
3378 6493 3.774766 TGTTGGATACCATGACTAGTGCT 59.225 43.478 0.00 0.00 31.53 4.40
3379 6494 4.959839 TGTTGGATACCATGACTAGTGCTA 59.040 41.667 0.00 0.00 31.53 3.49
3380 6495 5.163447 TGTTGGATACCATGACTAGTGCTAC 60.163 44.000 0.00 0.00 31.53 3.58
3381 6496 3.895656 TGGATACCATGACTAGTGCTACC 59.104 47.826 0.00 0.00 0.00 3.18
3382 6497 4.153411 GGATACCATGACTAGTGCTACCT 58.847 47.826 0.00 0.00 0.00 3.08
3383 6498 4.218852 GGATACCATGACTAGTGCTACCTC 59.781 50.000 0.00 0.00 0.00 3.85
3384 6499 3.390175 ACCATGACTAGTGCTACCTCT 57.610 47.619 0.00 0.00 0.00 3.69
3385 6500 3.714144 ACCATGACTAGTGCTACCTCTT 58.286 45.455 0.00 0.00 0.00 2.85
3386 6501 3.449018 ACCATGACTAGTGCTACCTCTTG 59.551 47.826 0.00 0.00 0.00 3.02
3387 6502 3.701542 CCATGACTAGTGCTACCTCTTGA 59.298 47.826 0.00 0.00 0.00 3.02
3388 6503 4.202101 CCATGACTAGTGCTACCTCTTGAG 60.202 50.000 0.00 0.00 0.00 3.02
3389 6504 2.755655 TGACTAGTGCTACCTCTTGAGC 59.244 50.000 0.00 0.00 39.25 4.26
3390 6505 2.755655 GACTAGTGCTACCTCTTGAGCA 59.244 50.000 0.00 0.00 46.24 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 8.299570 CACTAAAATTGCCTGATTCACTAAGTT 58.700 33.333 0.00 0.00 0.00 2.66
9 10 8.044060 TCACTAAAATTGCCTGATTCACTAAG 57.956 34.615 0.00 0.00 0.00 2.18
20 21 6.211184 TGTTGATTCCATCACTAAAATTGCCT 59.789 34.615 0.00 0.00 39.39 4.75
61 62 3.055240 CAGGAGTCCAGAGCTTCAGAAAT 60.055 47.826 12.86 0.00 0.00 2.17
62 63 2.301296 CAGGAGTCCAGAGCTTCAGAAA 59.699 50.000 12.86 0.00 0.00 2.52
65 66 1.204467 GTCAGGAGTCCAGAGCTTCAG 59.796 57.143 12.86 0.00 0.00 3.02
94 95 5.812127 GTGAAGCAAAACCATTCTTTTCTGT 59.188 36.000 0.00 0.00 0.00 3.41
143 144 9.788960 GACTTTGAAAAACACTAGAAGTTCAAT 57.211 29.630 5.50 0.00 35.55 2.57
149 150 9.626045 AAGTTTGACTTTGAAAAACACTAGAAG 57.374 29.630 0.00 0.00 34.11 2.85
209 210 4.216257 CAGTACACCCTCTGTTCCAAAATG 59.784 45.833 0.00 0.00 33.91 2.32
212 213 3.042682 TCAGTACACCCTCTGTTCCAAA 58.957 45.455 0.00 0.00 33.91 3.28
226 227 8.729756 CCTGTCAATGTTGAAATAATCAGTACA 58.270 33.333 0.00 0.00 39.77 2.90
294 296 1.202651 CCGCCTTTGACATACTAGGGG 60.203 57.143 0.00 0.00 39.63 4.79
352 355 5.188327 AGTGAAGCAAAGCTACTTTTTCC 57.812 39.130 0.00 0.00 38.25 3.13
353 356 6.960468 ACTAGTGAAGCAAAGCTACTTTTTC 58.040 36.000 0.00 0.00 38.25 2.29
393 427 6.037062 TCTCGTGCATTCAAACTATGTAATGG 59.963 38.462 0.00 0.00 32.15 3.16
409 658 5.237815 TCTATGTTGAAACTTCTCGTGCAT 58.762 37.500 0.00 0.00 0.00 3.96
434 683 9.892130 CCCTCTTTTACAAGTATTCTATCTGTT 57.108 33.333 0.00 0.00 0.00 3.16
480 765 5.104610 AGTCTATGATGTCCAGATTGCTGTT 60.105 40.000 0.00 0.00 40.63 3.16
484 769 5.236047 GTGAAGTCTATGATGTCCAGATTGC 59.764 44.000 0.00 0.00 0.00 3.56
499 784 1.357137 TGTGCCATGGGTGAAGTCTA 58.643 50.000 15.13 0.00 0.00 2.59
535 826 0.179100 CTAGCTACCAGCATGCGTGT 60.179 55.000 13.01 15.60 45.56 4.49
559 850 8.111545 TGAGACCTTTCCTAGTAGTACATGTTA 58.888 37.037 2.30 0.00 0.00 2.41
565 856 5.181748 TCGTGAGACCTTTCCTAGTAGTAC 58.818 45.833 0.00 0.00 33.31 2.73
599 892 4.443063 TGTTTGAAGTGTACAAGATCGTCG 59.557 41.667 0.00 0.00 0.00 5.12
626 919 1.272147 ACCAGATGCAAAGTCTTCCCC 60.272 52.381 0.00 0.00 0.00 4.81
657 950 3.481453 AGAGAGGAAAGGAAAGCACAAC 58.519 45.455 0.00 0.00 0.00 3.32
658 951 3.136443 TGAGAGAGGAAAGGAAAGCACAA 59.864 43.478 0.00 0.00 0.00 3.33
659 952 2.705658 TGAGAGAGGAAAGGAAAGCACA 59.294 45.455 0.00 0.00 0.00 4.57
660 953 3.409026 TGAGAGAGGAAAGGAAAGCAC 57.591 47.619 0.00 0.00 0.00 4.40
663 956 4.013267 TGCTTGAGAGAGGAAAGGAAAG 57.987 45.455 0.00 0.00 0.00 2.62
664 957 4.103153 TCTTGCTTGAGAGAGGAAAGGAAA 59.897 41.667 0.00 0.00 31.98 3.13
665 958 3.648067 TCTTGCTTGAGAGAGGAAAGGAA 59.352 43.478 0.00 0.00 31.58 3.36
666 959 3.242867 TCTTGCTTGAGAGAGGAAAGGA 58.757 45.455 0.00 0.00 0.00 3.36
667 960 3.692257 TCTTGCTTGAGAGAGGAAAGG 57.308 47.619 0.00 0.00 0.00 3.11
694 987 5.835113 TTGCAAGGCAAGATTAGGATTAC 57.165 39.130 0.00 0.00 43.99 1.89
800 1096 5.674933 AGAGTTTCAAGACACGGAAAATC 57.325 39.130 6.49 6.49 44.17 2.17
945 1247 8.999431 CCATGAAACAAAGCTCTTTAGTAGTAA 58.001 33.333 0.00 0.00 0.00 2.24
960 1263 2.886523 CCTGCAGTCTCCATGAAACAAA 59.113 45.455 13.81 0.00 0.00 2.83
992 1295 3.091545 TGCTTGCTTCCCATTTAGAAGG 58.908 45.455 2.97 0.00 40.91 3.46
1197 1511 1.135960 CCATTTCTCCTCCTCCCTCC 58.864 60.000 0.00 0.00 0.00 4.30
1279 1593 4.430765 ATGTCCACCGCCGACGAC 62.431 66.667 0.00 0.00 43.93 4.34
1301 1615 1.275856 CTTCAGTGAGAGAAGCCTGCT 59.724 52.381 0.00 0.00 36.43 4.24
1314 1628 2.159476 CGCCACCATGATTTCTTCAGTG 60.159 50.000 0.00 0.00 37.89 3.66
1381 1695 1.609501 TCCCCTGAACGTCCTGGAG 60.610 63.158 0.00 0.00 0.00 3.86
1477 1794 0.608640 CAGTAGTCCTGGAACCGCTT 59.391 55.000 0.00 0.00 37.54 4.68
1478 1795 0.542232 ACAGTAGTCCTGGAACCGCT 60.542 55.000 0.00 0.00 46.06 5.52
1488 1805 0.456312 CCTTCGCGTCACAGTAGTCC 60.456 60.000 5.77 0.00 0.00 3.85
1516 1833 0.457853 TGCATCTTCTGGTACGTCGC 60.458 55.000 0.00 0.00 0.00 5.19
1569 1886 2.286523 CCGCTGGTTCTGGGACTCT 61.287 63.158 0.00 0.00 0.00 3.24
1722 2039 0.110104 CATCCAAGGCCAGGATCCTC 59.890 60.000 22.88 0.74 43.90 3.71
1814 3079 3.907260 TTCCCCTTCTGCAGCTGCG 62.907 63.158 32.11 25.46 45.83 5.18
1857 3122 1.644780 GTCGACGAAGCGAAGAAGAAG 59.355 52.381 0.00 0.00 42.55 2.85
1882 3147 5.414789 TGATCAGACGGAAATGGAAGTAA 57.585 39.130 0.00 0.00 0.00 2.24
1883 3148 5.414789 TTGATCAGACGGAAATGGAAGTA 57.585 39.130 0.00 0.00 0.00 2.24
1884 3149 3.981071 TGATCAGACGGAAATGGAAGT 57.019 42.857 0.00 0.00 0.00 3.01
1906 3175 3.006323 TGCACAACACACAAGAAAAACCT 59.994 39.130 0.00 0.00 0.00 3.50
1907 3176 3.321497 TGCACAACACACAAGAAAAACC 58.679 40.909 0.00 0.00 0.00 3.27
1908 3177 4.201705 CCATGCACAACACACAAGAAAAAC 60.202 41.667 0.00 0.00 0.00 2.43
1909 3178 3.931468 CCATGCACAACACACAAGAAAAA 59.069 39.130 0.00 0.00 0.00 1.94
1910 3179 3.519579 CCATGCACAACACACAAGAAAA 58.480 40.909 0.00 0.00 0.00 2.29
1922 3194 2.100031 CGCTCTACGCCATGCACAA 61.100 57.895 0.00 0.00 34.21 3.33
2047 3320 1.000283 GTGATCCAGCCGAGGTAGATG 60.000 57.143 0.00 0.00 0.00 2.90
2361 3634 0.113190 CTTGCTTGGACCCTTTCCCT 59.887 55.000 0.00 0.00 45.17 4.20
2512 5333 3.126514 GTCAGCATCTGTGATTGAACTGG 59.873 47.826 0.00 0.00 32.61 4.00
2549 5370 4.215109 CCCACCCTTCTTTTTCTTTCTGA 58.785 43.478 0.00 0.00 0.00 3.27
2561 5382 0.853530 AACTTTGAGCCCACCCTTCT 59.146 50.000 0.00 0.00 0.00 2.85
2791 5774 5.128827 TGGAGCAAAACGACTAGGAGATAAT 59.871 40.000 0.00 0.00 0.00 1.28
2805 5788 5.872617 AGTTTTACCTTGTTTGGAGCAAAAC 59.127 36.000 0.00 0.00 39.90 2.43
3150 6265 2.281484 GTGTGGGTGTGCGGTCAT 60.281 61.111 0.00 0.00 0.00 3.06
3153 6268 1.835267 TAGAGTGTGGGTGTGCGGT 60.835 57.895 0.00 0.00 0.00 5.68
3154 6269 1.374252 GTAGAGTGTGGGTGTGCGG 60.374 63.158 0.00 0.00 0.00 5.69
3155 6270 0.037326 ATGTAGAGTGTGGGTGTGCG 60.037 55.000 0.00 0.00 0.00 5.34
3156 6271 1.276421 AGATGTAGAGTGTGGGTGTGC 59.724 52.381 0.00 0.00 0.00 4.57
3157 6272 4.402474 TCATAGATGTAGAGTGTGGGTGTG 59.598 45.833 0.00 0.00 0.00 3.82
3158 6273 4.610333 TCATAGATGTAGAGTGTGGGTGT 58.390 43.478 0.00 0.00 0.00 4.16
3159 6274 4.500545 GCTCATAGATGTAGAGTGTGGGTG 60.501 50.000 0.00 0.00 0.00 4.61
3160 6275 3.639094 GCTCATAGATGTAGAGTGTGGGT 59.361 47.826 0.00 0.00 0.00 4.51
3161 6276 3.638627 TGCTCATAGATGTAGAGTGTGGG 59.361 47.826 0.00 0.00 0.00 4.61
3162 6277 4.926140 TGCTCATAGATGTAGAGTGTGG 57.074 45.455 0.00 0.00 0.00 4.17
3163 6278 6.330004 AGATGCTCATAGATGTAGAGTGTG 57.670 41.667 0.00 0.00 0.00 3.82
3164 6279 5.476599 GGAGATGCTCATAGATGTAGAGTGT 59.523 44.000 0.00 0.00 31.08 3.55
3165 6280 5.391843 CGGAGATGCTCATAGATGTAGAGTG 60.392 48.000 0.00 0.00 31.08 3.51
3166 6281 4.699735 CGGAGATGCTCATAGATGTAGAGT 59.300 45.833 0.00 0.00 31.08 3.24
3167 6282 4.940654 TCGGAGATGCTCATAGATGTAGAG 59.059 45.833 0.00 0.00 31.08 2.43
3168 6283 4.911390 TCGGAGATGCTCATAGATGTAGA 58.089 43.478 0.00 0.00 31.08 2.59
3169 6284 4.940654 TCTCGGAGATGCTCATAGATGTAG 59.059 45.833 2.97 0.00 33.89 2.74
3170 6285 4.911390 TCTCGGAGATGCTCATAGATGTA 58.089 43.478 2.97 0.00 33.89 2.29
3171 6286 3.760738 TCTCGGAGATGCTCATAGATGT 58.239 45.455 2.97 0.00 33.89 3.06
3172 6287 4.987408 ATCTCGGAGATGCTCATAGATG 57.013 45.455 19.31 0.00 34.49 2.90
3173 6288 5.589855 CAGTATCTCGGAGATGCTCATAGAT 59.410 44.000 28.60 9.96 42.80 1.98
3174 6289 4.940654 CAGTATCTCGGAGATGCTCATAGA 59.059 45.833 28.60 7.11 42.80 1.98
3175 6290 4.940654 TCAGTATCTCGGAGATGCTCATAG 59.059 45.833 28.60 19.84 42.80 2.23
3176 6291 4.911390 TCAGTATCTCGGAGATGCTCATA 58.089 43.478 28.60 17.50 42.80 2.15
3177 6292 3.758023 CTCAGTATCTCGGAGATGCTCAT 59.242 47.826 28.60 11.83 42.80 2.90
3178 6293 3.145286 CTCAGTATCTCGGAGATGCTCA 58.855 50.000 28.60 19.55 42.80 4.26
3179 6294 2.095263 GCTCAGTATCTCGGAGATGCTC 60.095 54.545 28.60 17.62 42.80 4.26
3180 6295 1.885887 GCTCAGTATCTCGGAGATGCT 59.114 52.381 26.61 26.61 46.41 3.79
3181 6296 1.885887 AGCTCAGTATCTCGGAGATGC 59.114 52.381 26.72 25.05 40.01 3.91
3182 6297 4.517075 TGTTAGCTCAGTATCTCGGAGATG 59.483 45.833 26.72 14.41 40.01 2.90
3183 6298 4.517453 GTGTTAGCTCAGTATCTCGGAGAT 59.483 45.833 22.96 22.96 40.01 2.75
3184 6299 3.878103 GTGTTAGCTCAGTATCTCGGAGA 59.122 47.826 10.62 10.62 40.01 3.71
3185 6300 3.628032 TGTGTTAGCTCAGTATCTCGGAG 59.372 47.826 0.00 0.00 40.44 4.63
3186 6301 3.617284 TGTGTTAGCTCAGTATCTCGGA 58.383 45.455 0.00 0.00 0.00 4.55
3187 6302 4.106197 GTTGTGTTAGCTCAGTATCTCGG 58.894 47.826 0.00 0.00 0.00 4.63
3188 6303 4.733850 TGTTGTGTTAGCTCAGTATCTCG 58.266 43.478 0.00 0.00 0.00 4.04
3189 6304 6.568869 AGATGTTGTGTTAGCTCAGTATCTC 58.431 40.000 0.00 0.00 0.00 2.75
3190 6305 6.537453 AGATGTTGTGTTAGCTCAGTATCT 57.463 37.500 0.00 0.00 0.00 1.98
3191 6306 8.703604 TTAAGATGTTGTGTTAGCTCAGTATC 57.296 34.615 0.00 0.00 0.00 2.24
3192 6307 8.531982 TCTTAAGATGTTGTGTTAGCTCAGTAT 58.468 33.333 0.00 0.00 0.00 2.12
3193 6308 7.892609 TCTTAAGATGTTGTGTTAGCTCAGTA 58.107 34.615 0.00 0.00 0.00 2.74
3194 6309 6.759272 TCTTAAGATGTTGTGTTAGCTCAGT 58.241 36.000 0.00 0.00 0.00 3.41
3195 6310 7.840342 ATCTTAAGATGTTGTGTTAGCTCAG 57.160 36.000 17.26 0.00 32.68 3.35
3196 6311 8.097038 AGAATCTTAAGATGTTGTGTTAGCTCA 58.903 33.333 18.61 0.00 34.49 4.26
3197 6312 8.485976 AGAATCTTAAGATGTTGTGTTAGCTC 57.514 34.615 18.61 7.81 34.49 4.09
3198 6313 8.854614 AAGAATCTTAAGATGTTGTGTTAGCT 57.145 30.769 18.61 0.00 34.49 3.32
3199 6314 8.940952 AGAAGAATCTTAAGATGTTGTGTTAGC 58.059 33.333 18.61 2.98 34.49 3.09
3211 6326 9.923143 TGTTCGTTCAATAGAAGAATCTTAAGA 57.077 29.630 7.82 7.82 37.10 2.10
3215 6330 8.454106 CCAATGTTCGTTCAATAGAAGAATCTT 58.546 33.333 0.00 0.00 37.10 2.40
3216 6331 7.414540 GCCAATGTTCGTTCAATAGAAGAATCT 60.415 37.037 0.00 0.00 39.82 2.40
3217 6332 6.688813 GCCAATGTTCGTTCAATAGAAGAATC 59.311 38.462 0.00 0.00 33.63 2.52
3218 6333 6.150976 TGCCAATGTTCGTTCAATAGAAGAAT 59.849 34.615 0.00 0.00 33.63 2.40
3219 6334 5.471797 TGCCAATGTTCGTTCAATAGAAGAA 59.528 36.000 0.00 0.00 33.63 2.52
3220 6335 5.000591 TGCCAATGTTCGTTCAATAGAAGA 58.999 37.500 0.00 0.00 33.63 2.87
3221 6336 5.122239 TCTGCCAATGTTCGTTCAATAGAAG 59.878 40.000 0.00 0.00 33.63 2.85
3222 6337 5.000591 TCTGCCAATGTTCGTTCAATAGAA 58.999 37.500 0.00 0.00 0.00 2.10
3223 6338 4.574892 TCTGCCAATGTTCGTTCAATAGA 58.425 39.130 0.00 0.00 0.00 1.98
3224 6339 4.944962 TCTGCCAATGTTCGTTCAATAG 57.055 40.909 0.00 0.00 0.00 1.73
3225 6340 4.155826 CCTTCTGCCAATGTTCGTTCAATA 59.844 41.667 0.00 0.00 0.00 1.90
3226 6341 3.057315 CCTTCTGCCAATGTTCGTTCAAT 60.057 43.478 0.00 0.00 0.00 2.57
3227 6342 2.293122 CCTTCTGCCAATGTTCGTTCAA 59.707 45.455 0.00 0.00 0.00 2.69
3228 6343 1.879380 CCTTCTGCCAATGTTCGTTCA 59.121 47.619 0.00 0.00 0.00 3.18
3229 6344 1.200020 CCCTTCTGCCAATGTTCGTTC 59.800 52.381 0.00 0.00 0.00 3.95
3230 6345 1.247567 CCCTTCTGCCAATGTTCGTT 58.752 50.000 0.00 0.00 0.00 3.85
3231 6346 0.110486 ACCCTTCTGCCAATGTTCGT 59.890 50.000 0.00 0.00 0.00 3.85
3232 6347 1.247567 AACCCTTCTGCCAATGTTCG 58.752 50.000 0.00 0.00 0.00 3.95
3233 6348 4.864704 TTTAACCCTTCTGCCAATGTTC 57.135 40.909 0.00 0.00 0.00 3.18
3234 6349 5.823861 ATTTTAACCCTTCTGCCAATGTT 57.176 34.783 0.00 0.00 0.00 2.71
3235 6350 6.926630 TTATTTTAACCCTTCTGCCAATGT 57.073 33.333 0.00 0.00 0.00 2.71
3236 6351 8.260114 AGATTTATTTTAACCCTTCTGCCAATG 58.740 33.333 0.00 0.00 0.00 2.82
3237 6352 8.379428 AGATTTATTTTAACCCTTCTGCCAAT 57.621 30.769 0.00 0.00 0.00 3.16
3238 6353 7.790782 AGATTTATTTTAACCCTTCTGCCAA 57.209 32.000 0.00 0.00 0.00 4.52
3239 6354 7.559897 CCTAGATTTATTTTAACCCTTCTGCCA 59.440 37.037 0.00 0.00 0.00 4.92
3240 6355 7.778382 TCCTAGATTTATTTTAACCCTTCTGCC 59.222 37.037 0.00 0.00 0.00 4.85
3241 6356 8.747538 TCCTAGATTTATTTTAACCCTTCTGC 57.252 34.615 0.00 0.00 0.00 4.26
3252 6367 8.806146 AGTGCACACATTTCCTAGATTTATTTT 58.194 29.630 21.04 0.00 0.00 1.82
3253 6368 8.353423 AGTGCACACATTTCCTAGATTTATTT 57.647 30.769 21.04 0.00 0.00 1.40
3254 6369 7.944729 AGTGCACACATTTCCTAGATTTATT 57.055 32.000 21.04 0.00 0.00 1.40
3255 6370 8.267894 ACTAGTGCACACATTTCCTAGATTTAT 58.732 33.333 21.04 0.00 0.00 1.40
3256 6371 7.549134 CACTAGTGCACACATTTCCTAGATTTA 59.451 37.037 21.04 0.00 0.00 1.40
3257 6372 6.372659 CACTAGTGCACACATTTCCTAGATTT 59.627 38.462 21.04 0.00 0.00 2.17
3258 6373 5.877012 CACTAGTGCACACATTTCCTAGATT 59.123 40.000 21.04 0.00 0.00 2.40
3259 6374 5.423015 CACTAGTGCACACATTTCCTAGAT 58.577 41.667 21.04 0.00 0.00 1.98
3260 6375 4.820897 CACTAGTGCACACATTTCCTAGA 58.179 43.478 21.04 0.00 0.00 2.43
3276 6391 1.077334 AGGTCCTACACTGGCACTAGT 59.923 52.381 0.00 0.00 0.00 2.57
3277 6392 1.853963 AGGTCCTACACTGGCACTAG 58.146 55.000 0.00 0.00 0.00 2.57
3278 6393 3.461378 TTAGGTCCTACACTGGCACTA 57.539 47.619 0.00 0.00 0.00 2.74
3279 6394 2.302157 GTTTAGGTCCTACACTGGCACT 59.698 50.000 7.81 0.00 0.00 4.40
3280 6395 2.302157 AGTTTAGGTCCTACACTGGCAC 59.698 50.000 15.62 0.00 27.55 5.01
3281 6396 2.565834 GAGTTTAGGTCCTACACTGGCA 59.434 50.000 20.28 0.00 28.63 4.92
3282 6397 2.832733 AGAGTTTAGGTCCTACACTGGC 59.167 50.000 20.28 8.67 28.63 4.85
3283 6398 3.195825 CCAGAGTTTAGGTCCTACACTGG 59.804 52.174 20.28 19.29 41.77 4.00
3284 6399 3.833070 ACCAGAGTTTAGGTCCTACACTG 59.167 47.826 20.28 15.06 30.79 3.66
3285 6400 3.833070 CACCAGAGTTTAGGTCCTACACT 59.167 47.826 16.20 16.20 35.52 3.55
3286 6401 3.056035 CCACCAGAGTTTAGGTCCTACAC 60.056 52.174 7.06 7.06 35.52 2.90
3287 6402 3.170717 CCACCAGAGTTTAGGTCCTACA 58.829 50.000 0.00 0.00 35.52 2.74
3288 6403 2.500504 CCCACCAGAGTTTAGGTCCTAC 59.499 54.545 0.00 0.00 35.52 3.18
3289 6404 2.113052 ACCCACCAGAGTTTAGGTCCTA 59.887 50.000 0.00 0.00 35.52 2.94
3290 6405 1.132495 ACCCACCAGAGTTTAGGTCCT 60.132 52.381 0.00 0.00 35.52 3.85
3291 6406 1.359168 ACCCACCAGAGTTTAGGTCC 58.641 55.000 0.00 0.00 35.52 4.46
3292 6407 3.181448 TGAAACCCACCAGAGTTTAGGTC 60.181 47.826 0.00 0.00 36.36 3.85
3293 6408 2.781174 TGAAACCCACCAGAGTTTAGGT 59.219 45.455 0.00 0.00 36.36 3.08
3294 6409 3.146847 GTGAAACCCACCAGAGTTTAGG 58.853 50.000 0.00 0.00 39.86 2.69
3310 6425 1.598601 GTTAGGTTTCGTGCGGTGAAA 59.401 47.619 0.00 0.00 33.18 2.69
3311 6426 1.219646 GTTAGGTTTCGTGCGGTGAA 58.780 50.000 0.00 0.00 0.00 3.18
3312 6427 0.600782 GGTTAGGTTTCGTGCGGTGA 60.601 55.000 0.00 0.00 0.00 4.02
3313 6428 0.881159 TGGTTAGGTTTCGTGCGGTG 60.881 55.000 0.00 0.00 0.00 4.94
3314 6429 0.035739 ATGGTTAGGTTTCGTGCGGT 59.964 50.000 0.00 0.00 0.00 5.68
3315 6430 0.725117 GATGGTTAGGTTTCGTGCGG 59.275 55.000 0.00 0.00 0.00 5.69
3316 6431 0.725117 GGATGGTTAGGTTTCGTGCG 59.275 55.000 0.00 0.00 0.00 5.34
3317 6432 0.725117 CGGATGGTTAGGTTTCGTGC 59.275 55.000 0.00 0.00 0.00 5.34
3318 6433 2.268298 CTCGGATGGTTAGGTTTCGTG 58.732 52.381 0.00 0.00 0.00 4.35
3319 6434 1.405121 GCTCGGATGGTTAGGTTTCGT 60.405 52.381 0.00 0.00 0.00 3.85
3320 6435 1.134788 AGCTCGGATGGTTAGGTTTCG 60.135 52.381 0.00 0.00 0.00 3.46
3321 6436 2.693267 AGCTCGGATGGTTAGGTTTC 57.307 50.000 0.00 0.00 0.00 2.78
3322 6437 2.835764 TGTAGCTCGGATGGTTAGGTTT 59.164 45.455 0.00 0.00 0.00 3.27
3323 6438 2.431057 CTGTAGCTCGGATGGTTAGGTT 59.569 50.000 0.00 0.00 0.00 3.50
3324 6439 2.032620 CTGTAGCTCGGATGGTTAGGT 58.967 52.381 0.00 0.00 0.00 3.08
3325 6440 2.032620 ACTGTAGCTCGGATGGTTAGG 58.967 52.381 0.00 0.00 0.00 2.69
3326 6441 3.802948 AACTGTAGCTCGGATGGTTAG 57.197 47.619 0.00 0.00 0.00 2.34
3327 6442 3.857052 CAAACTGTAGCTCGGATGGTTA 58.143 45.455 0.00 0.00 0.00 2.85
3328 6443 2.699954 CAAACTGTAGCTCGGATGGTT 58.300 47.619 0.00 0.00 0.00 3.67
3329 6444 1.676014 GCAAACTGTAGCTCGGATGGT 60.676 52.381 0.00 0.00 0.00 3.55
3330 6445 1.009829 GCAAACTGTAGCTCGGATGG 58.990 55.000 0.00 0.00 0.00 3.51
3331 6446 1.725641 TGCAAACTGTAGCTCGGATG 58.274 50.000 0.00 0.00 0.00 3.51
3332 6447 2.698855 ATGCAAACTGTAGCTCGGAT 57.301 45.000 0.00 0.00 0.00 4.18
3333 6448 2.734175 CGTATGCAAACTGTAGCTCGGA 60.734 50.000 0.00 0.00 0.00 4.55
3334 6449 1.588404 CGTATGCAAACTGTAGCTCGG 59.412 52.381 0.00 0.00 0.00 4.63
3335 6450 2.526077 TCGTATGCAAACTGTAGCTCG 58.474 47.619 0.00 8.34 0.00 5.03
3336 6451 3.865745 ACATCGTATGCAAACTGTAGCTC 59.134 43.478 0.00 0.00 0.00 4.09
3337 6452 3.861840 ACATCGTATGCAAACTGTAGCT 58.138 40.909 0.00 0.00 0.00 3.32
3338 6453 4.334443 CAACATCGTATGCAAACTGTAGC 58.666 43.478 0.00 0.00 0.00 3.58
3339 6454 4.629634 TCCAACATCGTATGCAAACTGTAG 59.370 41.667 0.00 0.00 0.00 2.74
3340 6455 4.570930 TCCAACATCGTATGCAAACTGTA 58.429 39.130 0.00 0.00 0.00 2.74
3341 6456 3.407698 TCCAACATCGTATGCAAACTGT 58.592 40.909 0.00 0.00 0.00 3.55
3342 6457 4.621068 ATCCAACATCGTATGCAAACTG 57.379 40.909 0.00 0.00 0.00 3.16
3343 6458 4.574828 GGTATCCAACATCGTATGCAAACT 59.425 41.667 0.00 0.00 0.00 2.66
3344 6459 4.334203 TGGTATCCAACATCGTATGCAAAC 59.666 41.667 0.00 0.00 0.00 2.93
3345 6460 4.518249 TGGTATCCAACATCGTATGCAAA 58.482 39.130 0.00 0.00 0.00 3.68
3346 6461 4.143986 TGGTATCCAACATCGTATGCAA 57.856 40.909 0.00 0.00 0.00 4.08
3347 6462 3.828875 TGGTATCCAACATCGTATGCA 57.171 42.857 0.00 0.00 0.00 3.96
3348 6463 4.152402 GTCATGGTATCCAACATCGTATGC 59.848 45.833 0.00 0.00 36.95 3.14
3349 6464 5.541845 AGTCATGGTATCCAACATCGTATG 58.458 41.667 0.00 0.00 36.95 2.39
3350 6465 5.808366 AGTCATGGTATCCAACATCGTAT 57.192 39.130 0.00 0.00 36.95 3.06
3351 6466 5.831525 ACTAGTCATGGTATCCAACATCGTA 59.168 40.000 0.00 0.00 36.95 3.43
3352 6467 4.649674 ACTAGTCATGGTATCCAACATCGT 59.350 41.667 0.00 0.00 36.95 3.73
3353 6468 4.984785 CACTAGTCATGGTATCCAACATCG 59.015 45.833 0.00 0.00 36.95 3.84
3354 6469 4.752101 GCACTAGTCATGGTATCCAACATC 59.248 45.833 0.00 0.00 36.95 3.06
3355 6470 4.410228 AGCACTAGTCATGGTATCCAACAT 59.590 41.667 0.00 0.00 36.95 2.71
3356 6471 3.774766 AGCACTAGTCATGGTATCCAACA 59.225 43.478 0.00 0.00 36.95 3.33
3357 6472 4.408182 AGCACTAGTCATGGTATCCAAC 57.592 45.455 0.00 0.00 36.95 3.77
3358 6473 4.344102 GGTAGCACTAGTCATGGTATCCAA 59.656 45.833 0.00 0.00 36.95 3.53
3359 6474 3.895656 GGTAGCACTAGTCATGGTATCCA 59.104 47.826 0.00 0.00 38.19 3.41
3360 6475 4.153411 AGGTAGCACTAGTCATGGTATCC 58.847 47.826 0.00 0.00 32.64 2.59
3361 6476 5.074115 AGAGGTAGCACTAGTCATGGTATC 58.926 45.833 0.00 0.00 32.98 2.24
3362 6477 5.068215 AGAGGTAGCACTAGTCATGGTAT 57.932 43.478 0.00 0.00 32.98 2.73
3363 6478 4.521536 AGAGGTAGCACTAGTCATGGTA 57.478 45.455 0.00 0.00 0.00 3.25
3364 6479 3.390175 AGAGGTAGCACTAGTCATGGT 57.610 47.619 0.00 0.00 0.00 3.55
3365 6480 3.701542 TCAAGAGGTAGCACTAGTCATGG 59.298 47.826 0.00 0.00 0.00 3.66
3366 6481 4.736168 GCTCAAGAGGTAGCACTAGTCATG 60.736 50.000 0.00 0.00 38.63 3.07
3367 6482 3.383185 GCTCAAGAGGTAGCACTAGTCAT 59.617 47.826 0.00 0.00 38.63 3.06
3368 6483 2.755655 GCTCAAGAGGTAGCACTAGTCA 59.244 50.000 0.00 0.00 38.63 3.41
3369 6484 2.755655 TGCTCAAGAGGTAGCACTAGTC 59.244 50.000 0.00 0.00 43.56 2.59
3370 6485 2.808919 TGCTCAAGAGGTAGCACTAGT 58.191 47.619 0.00 0.00 43.56 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.