Multiple sequence alignment - TraesCS1A01G104500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G104500 chr1A 100.000 7298 0 0 1 7298 100266368 100273665 0.000000e+00 13477.0
1 TraesCS1A01G104500 chr1A 78.175 1315 265 19 4507 5813 71089135 71087835 0.000000e+00 819.0
2 TraesCS1A01G104500 chr1A 78.815 1114 224 12 4513 5620 15193513 15194620 0.000000e+00 739.0
3 TraesCS1A01G104500 chr1A 84.993 693 72 16 14 681 497831647 497830962 0.000000e+00 675.0
4 TraesCS1A01G104500 chr1D 91.452 4785 247 59 2260 6943 81740852 81745575 0.000000e+00 6421.0
5 TraesCS1A01G104500 chr1D 92.096 2872 158 14 3913 6743 83690462 83693305 0.000000e+00 3982.0
6 TraesCS1A01G104500 chr1D 90.767 1148 69 13 765 1893 81739189 81740318 0.000000e+00 1498.0
7 TraesCS1A01G104500 chr1D 78.284 1317 260 21 4507 5813 70595947 70594647 0.000000e+00 824.0
8 TraesCS1A01G104500 chr1D 87.926 704 42 13 14 681 476375697 476375001 0.000000e+00 789.0
9 TraesCS1A01G104500 chr1D 88.099 647 50 12 2873 3508 83689757 83690387 0.000000e+00 743.0
10 TraesCS1A01G104500 chr1D 84.870 694 72 17 14 681 416350969 416351655 0.000000e+00 669.0
11 TraesCS1A01G104500 chr1D 87.337 537 46 13 2298 2830 83689233 83689751 4.870000e-166 595.0
12 TraesCS1A01G104500 chr1D 85.261 441 46 14 254 681 258498219 258497785 3.130000e-118 436.0
13 TraesCS1A01G104500 chr1D 92.620 271 16 4 1852 2120 83688522 83688790 3.190000e-103 387.0
14 TraesCS1A01G104500 chr1D 94.323 229 12 1 1892 2120 81740370 81740597 4.190000e-92 350.0
15 TraesCS1A01G104500 chr1D 93.023 215 11 2 7027 7237 81745845 81746059 1.980000e-80 311.0
16 TraesCS1A01G104500 chr1D 94.872 156 4 3 2257 2408 83689149 83689304 2.630000e-59 241.0
17 TraesCS1A01G104500 chr1D 89.474 171 13 5 3593 3762 7349689 7349855 2.060000e-50 211.0
18 TraesCS1A01G104500 chr1D 84.615 104 16 0 5969 6072 81744636 81744739 3.600000e-18 104.0
19 TraesCS1A01G104500 chr1D 83.654 104 16 1 5969 6072 83692592 83692694 6.030000e-16 97.1
20 TraesCS1A01G104500 chr1D 100.000 34 0 0 2227 2260 81740794 81740827 6.110000e-06 63.9
21 TraesCS1A01G104500 chr1D 100.000 29 0 0 2174 2202 83688841 83688869 4.000000e-03 54.7
22 TraesCS1A01G104500 chr1B 92.024 2658 155 17 3417 6060 136627181 136629795 0.000000e+00 3681.0
23 TraesCS1A01G104500 chr1B 89.586 893 47 18 733 1609 136625370 136626232 0.000000e+00 1092.0
24 TraesCS1A01G104500 chr1B 78.707 1315 258 19 4507 5813 112204490 112203190 0.000000e+00 857.0
25 TraesCS1A01G104500 chr1B 92.713 494 27 3 1635 2120 136626416 136626908 0.000000e+00 704.0
26 TraesCS1A01G104500 chr1B 81.077 724 47 25 6059 6705 136629704 136630414 5.090000e-136 496.0
27 TraesCS1A01G104500 chr7A 91.619 704 36 9 1 681 671136792 671136089 0.000000e+00 952.0
28 TraesCS1A01G104500 chr7A 88.024 167 18 2 3607 3772 421785160 421784995 5.780000e-46 196.0
29 TraesCS1A01G104500 chr2A 90.832 709 39 11 1 683 28469078 28468370 0.000000e+00 926.0
30 TraesCS1A01G104500 chr6B 88.858 718 36 17 1 681 48650801 48650091 0.000000e+00 843.0
31 TraesCS1A01G104500 chr5A 85.653 697 64 15 14 682 12578982 12579670 0.000000e+00 701.0
32 TraesCS1A01G104500 chr5A 85.591 694 67 15 14 681 39310993 39311679 0.000000e+00 697.0
33 TraesCS1A01G104500 chr5A 85.260 692 68 15 14 678 688535990 688536674 0.000000e+00 682.0
34 TraesCS1A01G104500 chr5A 92.640 394 13 3 1 379 25907129 25907521 2.980000e-153 553.0
35 TraesCS1A01G104500 chrUn 78.007 1114 233 12 4513 5620 9846616 9845509 0.000000e+00 689.0
36 TraesCS1A01G104500 chr4A 84.857 700 71 18 14 686 645865630 645866321 0.000000e+00 673.0
37 TraesCS1A01G104500 chr2D 84.848 693 72 14 14 681 291873544 291872860 0.000000e+00 667.0
38 TraesCS1A01G104500 chr3D 84.910 444 46 17 251 681 602218366 602218801 5.230000e-116 429.0
39 TraesCS1A01G104500 chr2B 84.529 446 50 15 245 682 249668320 249668754 2.430000e-114 424.0
40 TraesCS1A01G104500 chr4B 90.446 157 14 1 3609 3765 613321975 613321820 9.600000e-49 206.0
41 TraesCS1A01G104500 chr4B 89.809 157 14 2 3606 3762 146469370 146469216 4.470000e-47 200.0
42 TraesCS1A01G104500 chr4B 89.610 154 15 1 3609 3762 438375333 438375181 2.080000e-45 195.0
43 TraesCS1A01G104500 chr3B 90.323 155 14 1 3609 3762 328715598 328715444 1.240000e-47 202.0
44 TraesCS1A01G104500 chr4D 89.809 157 15 1 3609 3765 483111487 483111332 4.470000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G104500 chr1A 100266368 100273665 7297 False 13477.000000 13477 100.000000 1 7298 1 chr1A.!!$F2 7297
1 TraesCS1A01G104500 chr1A 71087835 71089135 1300 True 819.000000 819 78.175000 4507 5813 1 chr1A.!!$R1 1306
2 TraesCS1A01G104500 chr1A 15193513 15194620 1107 False 739.000000 739 78.815000 4513 5620 1 chr1A.!!$F1 1107
3 TraesCS1A01G104500 chr1A 497830962 497831647 685 True 675.000000 675 84.993000 14 681 1 chr1A.!!$R2 667
4 TraesCS1A01G104500 chr1D 81739189 81746059 6870 False 1457.983333 6421 92.363333 765 7237 6 chr1D.!!$F3 6472
5 TraesCS1A01G104500 chr1D 83688522 83693305 4783 False 871.400000 3982 91.239714 1852 6743 7 chr1D.!!$F4 4891
6 TraesCS1A01G104500 chr1D 70594647 70595947 1300 True 824.000000 824 78.284000 4507 5813 1 chr1D.!!$R1 1306
7 TraesCS1A01G104500 chr1D 476375001 476375697 696 True 789.000000 789 87.926000 14 681 1 chr1D.!!$R3 667
8 TraesCS1A01G104500 chr1D 416350969 416351655 686 False 669.000000 669 84.870000 14 681 1 chr1D.!!$F2 667
9 TraesCS1A01G104500 chr1B 136625370 136630414 5044 False 1493.250000 3681 88.850000 733 6705 4 chr1B.!!$F1 5972
10 TraesCS1A01G104500 chr1B 112203190 112204490 1300 True 857.000000 857 78.707000 4507 5813 1 chr1B.!!$R1 1306
11 TraesCS1A01G104500 chr7A 671136089 671136792 703 True 952.000000 952 91.619000 1 681 1 chr7A.!!$R2 680
12 TraesCS1A01G104500 chr2A 28468370 28469078 708 True 926.000000 926 90.832000 1 683 1 chr2A.!!$R1 682
13 TraesCS1A01G104500 chr6B 48650091 48650801 710 True 843.000000 843 88.858000 1 681 1 chr6B.!!$R1 680
14 TraesCS1A01G104500 chr5A 12578982 12579670 688 False 701.000000 701 85.653000 14 682 1 chr5A.!!$F1 668
15 TraesCS1A01G104500 chr5A 39310993 39311679 686 False 697.000000 697 85.591000 14 681 1 chr5A.!!$F3 667
16 TraesCS1A01G104500 chr5A 688535990 688536674 684 False 682.000000 682 85.260000 14 678 1 chr5A.!!$F4 664
17 TraesCS1A01G104500 chrUn 9845509 9846616 1107 True 689.000000 689 78.007000 4513 5620 1 chrUn.!!$R1 1107
18 TraesCS1A01G104500 chr4A 645865630 645866321 691 False 673.000000 673 84.857000 14 686 1 chr4A.!!$F1 672
19 TraesCS1A01G104500 chr2D 291872860 291873544 684 True 667.000000 667 84.848000 14 681 1 chr2D.!!$R1 667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
659 722 0.039035 TTTAGTTTCGCATGGGGCCT 59.961 50.0 10.21 6.04 40.31 5.19 F
1440 1536 0.035439 AATTTCCCTCGTGCGGTGAT 60.035 50.0 0.00 0.00 0.00 3.06 F
2130 2441 0.039256 CATGTGACACCGGCCTTTTG 60.039 55.0 0.00 0.00 0.00 2.44 F
2154 2465 0.105593 GAGAATGGCTCATCCGCTCA 59.894 55.0 0.00 0.00 43.38 4.26 F
4124 4791 0.036875 AGGGCTGAGCAAGGTGTTAC 59.963 55.0 6.82 0.00 0.00 2.50 F
5045 5713 0.313672 TTCAACGGCAAATCTGTGGC 59.686 50.0 0.00 0.00 40.55 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2135 2446 0.105593 TGAGCGGATGAGCCATTCTC 59.894 55.000 0.00 0.0 42.23 2.87 R
3310 3957 0.322816 TGGCTGGCTTCATGACTTCC 60.323 55.000 0.00 0.0 0.00 3.46 R
4086 4753 1.770658 CTTGACCCATGGATGCCTAGA 59.229 52.381 15.22 0.0 0.00 2.43 R
4152 4819 1.596727 GCAATAGAAGAGCGCAAGAGG 59.403 52.381 11.47 0.0 43.02 3.69 R
5186 5854 1.403679 TCTGTGCAACTGTTTTTCGGG 59.596 47.619 0.00 0.0 38.04 5.14 R
6801 7567 0.536006 GGATTGGAGGATTGAGCGGG 60.536 60.000 0.00 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
216 219 7.338196 TCATGCCAAAAGAAAATATCGAACCTA 59.662 33.333 0.00 0.00 0.00 3.08
217 220 6.848451 TGCCAAAAGAAAATATCGAACCTAC 58.152 36.000 0.00 0.00 0.00 3.18
346 364 4.872691 GCTATTGAAGTCCTATATGCGCAT 59.127 41.667 28.23 28.23 0.00 4.73
369 387 7.515841 GCATTACTATGACACATCAAAGACTCG 60.516 40.741 0.00 0.00 38.69 4.18
383 401 3.085443 AGACTCGATGATTTGGCTACG 57.915 47.619 0.00 0.00 0.00 3.51
453 476 8.408601 CGAGGGTATGATTGAAGATTTCATTTT 58.591 33.333 0.00 0.00 39.84 1.82
513 537 7.504926 AACAAACTGGAGTTGGATAGGTATA 57.495 36.000 0.71 0.00 38.44 1.47
540 566 9.816354 ACCTTTTTATATGTCCAATTGTTATGC 57.184 29.630 4.43 0.00 0.00 3.14
659 722 0.039035 TTTAGTTTCGCATGGGGCCT 59.961 50.000 10.21 6.04 40.31 5.19
699 764 2.238353 CTTGTGAGCAACCAGACGG 58.762 57.895 0.00 0.00 38.77 4.79
700 765 1.845809 CTTGTGAGCAACCAGACGGC 61.846 60.000 0.00 0.00 34.57 5.68
701 766 2.280797 GTGAGCAACCAGACGGCA 60.281 61.111 0.00 0.00 34.57 5.69
702 767 1.672356 GTGAGCAACCAGACGGCAT 60.672 57.895 0.00 0.00 34.57 4.40
703 768 1.375908 TGAGCAACCAGACGGCATC 60.376 57.895 0.00 0.00 34.57 3.91
704 769 2.045926 AGCAACCAGACGGCATCC 60.046 61.111 0.00 0.00 34.57 3.51
705 770 3.134127 GCAACCAGACGGCATCCC 61.134 66.667 0.00 0.00 34.57 3.85
706 771 2.350895 CAACCAGACGGCATCCCA 59.649 61.111 0.00 0.00 34.57 4.37
707 772 1.077501 CAACCAGACGGCATCCCAT 60.078 57.895 0.00 0.00 34.57 4.00
708 773 1.077501 AACCAGACGGCATCCCATG 60.078 57.895 0.00 0.00 34.57 3.66
709 774 2.203252 CCAGACGGCATCCCATGG 60.203 66.667 4.14 4.14 0.00 3.66
710 775 2.203252 CAGACGGCATCCCATGGG 60.203 66.667 26.30 26.30 0.00 4.00
720 785 2.211375 TCCCATGGGATCAGACACG 58.789 57.895 30.62 0.00 39.76 4.49
721 786 1.524621 CCCATGGGATCAGACACGC 60.525 63.158 28.27 0.00 37.50 5.34
722 787 1.524621 CCATGGGATCAGACACGCC 60.525 63.158 2.85 0.00 0.00 5.68
723 788 1.221566 CATGGGATCAGACACGCCA 59.778 57.895 0.00 0.00 0.00 5.69
724 789 1.091771 CATGGGATCAGACACGCCAC 61.092 60.000 0.00 0.00 0.00 5.01
725 790 1.552799 ATGGGATCAGACACGCCACA 61.553 55.000 0.00 0.00 0.00 4.17
726 791 1.448540 GGGATCAGACACGCCACAG 60.449 63.158 0.00 0.00 0.00 3.66
727 792 1.293498 GGATCAGACACGCCACAGT 59.707 57.895 0.00 0.00 0.00 3.55
728 793 0.320771 GGATCAGACACGCCACAGTT 60.321 55.000 0.00 0.00 0.00 3.16
729 794 1.071605 GATCAGACACGCCACAGTTC 58.928 55.000 0.00 0.00 0.00 3.01
730 795 0.392706 ATCAGACACGCCACAGTTCA 59.607 50.000 0.00 0.00 0.00 3.18
731 796 0.529773 TCAGACACGCCACAGTTCAC 60.530 55.000 0.00 0.00 0.00 3.18
734 799 1.548973 GACACGCCACAGTTCACTCG 61.549 60.000 0.00 0.00 0.00 4.18
816 883 4.867599 CCGCGGCTTCCCTCGTAC 62.868 72.222 14.67 0.00 37.63 3.67
903 971 4.154347 CCTCCACAGCCTCGCTCC 62.154 72.222 0.00 0.00 36.40 4.70
925 994 2.314647 ACATTCGCACCCGTGAACG 61.315 57.895 0.00 0.00 44.10 3.95
939 1022 0.967887 TGAACGCTCTCCTCTCCCTG 60.968 60.000 0.00 0.00 0.00 4.45
964 1047 2.858476 TTCCAGAAGCCAGGGCCA 60.858 61.111 6.18 0.00 43.17 5.36
1188 1283 1.075151 GATCCTCGTCCCCTCCCTT 60.075 63.158 0.00 0.00 0.00 3.95
1267 1362 2.049156 TCTGCAACTCCGTCTGCG 60.049 61.111 0.00 0.00 41.63 5.18
1302 1397 4.162690 GTCGCTCTCCCGCCCAAT 62.163 66.667 0.00 0.00 0.00 3.16
1322 1418 3.282157 CCCCGCGATCTGCATTGG 61.282 66.667 8.23 0.00 46.97 3.16
1362 1458 7.836685 TGGATTAGGGTTTTGATGTGCTTTATA 59.163 33.333 0.00 0.00 0.00 0.98
1367 1463 6.437162 AGGGTTTTGATGTGCTTTATATGTGT 59.563 34.615 0.00 0.00 0.00 3.72
1368 1464 6.531240 GGGTTTTGATGTGCTTTATATGTGTG 59.469 38.462 0.00 0.00 0.00 3.82
1369 1465 6.034898 GGTTTTGATGTGCTTTATATGTGTGC 59.965 38.462 0.00 0.00 0.00 4.57
1370 1466 6.513806 TTTGATGTGCTTTATATGTGTGCT 57.486 33.333 0.00 0.00 0.00 4.40
1371 1467 7.622893 TTTGATGTGCTTTATATGTGTGCTA 57.377 32.000 0.00 0.00 0.00 3.49
1372 1468 7.622893 TTGATGTGCTTTATATGTGTGCTAA 57.377 32.000 0.00 0.00 0.00 3.09
1373 1469 7.015226 TGATGTGCTTTATATGTGTGCTAAC 57.985 36.000 0.00 0.00 0.00 2.34
1374 1470 6.823182 TGATGTGCTTTATATGTGTGCTAACT 59.177 34.615 0.00 0.00 0.00 2.24
1375 1471 6.421377 TGTGCTTTATATGTGTGCTAACTG 57.579 37.500 0.00 0.00 0.00 3.16
1418 1514 2.215196 GTTCTGCACGGTTTTCCTGTA 58.785 47.619 0.00 0.00 37.95 2.74
1429 1525 5.221986 ACGGTTTTCCTGTACTAATTTCCCT 60.222 40.000 0.00 0.00 37.95 4.20
1431 1527 5.353400 GGTTTTCCTGTACTAATTTCCCTCG 59.647 44.000 0.00 0.00 36.94 4.63
1432 1528 5.750352 TTTCCTGTACTAATTTCCCTCGT 57.250 39.130 0.00 0.00 0.00 4.18
1440 1536 0.035439 AATTTCCCTCGTGCGGTGAT 60.035 50.000 0.00 0.00 0.00 3.06
1475 1571 0.170116 CCGCGAGATCTATGGCTCTC 59.830 60.000 8.23 0.11 35.58 3.20
1506 1602 2.977456 TGCATGCACGCTTTCGGT 60.977 55.556 18.46 0.00 40.69 4.69
1519 1615 1.804748 CTTTCGGTGGGCTTGTAGTTC 59.195 52.381 0.00 0.00 0.00 3.01
1526 1622 3.010420 GTGGGCTTGTAGTTCATTCCTC 58.990 50.000 0.00 0.00 0.00 3.71
1645 1871 4.038282 AGTTATGTGGTCAATATACGGCGA 59.962 41.667 16.62 0.00 0.00 5.54
1646 1872 3.678056 ATGTGGTCAATATACGGCGAT 57.322 42.857 16.62 5.41 0.00 4.58
1712 1968 8.903820 ACTTAAATCAGTTATCATAACCTTGCC 58.096 33.333 3.76 0.00 0.00 4.52
1714 1970 6.949352 AATCAGTTATCATAACCTTGCCTG 57.051 37.500 3.76 0.00 0.00 4.85
1718 1974 2.530460 ATCATAACCTTGCCTGCCAA 57.470 45.000 0.00 0.00 0.00 4.52
1720 1976 2.378038 TCATAACCTTGCCTGCCAATC 58.622 47.619 0.00 0.00 31.91 2.67
1756 2012 5.658190 AGCTATCCGGTACTACCAAAACTAA 59.342 40.000 0.00 0.00 38.47 2.24
1762 2018 5.409520 CCGGTACTACCAAAACTAAAAGACC 59.590 44.000 6.06 0.00 38.47 3.85
1878 2135 4.968259 TGTACATTAGAGCACACAAACCT 58.032 39.130 0.00 0.00 0.00 3.50
1968 2278 3.055747 AGGACTTCCGTTTTCCTGATCTC 60.056 47.826 0.00 0.00 38.40 2.75
1995 2306 3.135994 TCTGCCTGAACGTTTTACCTTC 58.864 45.455 0.46 0.00 0.00 3.46
2016 2327 6.183360 CCTTCTGTTTGTGTGGTTTAATGTCT 60.183 38.462 0.00 0.00 0.00 3.41
2121 2432 2.012673 GAGAATGGCTCATGTGACACC 58.987 52.381 5.23 1.18 43.38 4.16
2122 2433 0.729116 GAATGGCTCATGTGACACCG 59.271 55.000 5.23 0.00 0.00 4.94
2123 2434 0.677731 AATGGCTCATGTGACACCGG 60.678 55.000 5.23 0.00 0.00 5.28
2124 2435 3.127533 GGCTCATGTGACACCGGC 61.128 66.667 0.00 2.24 0.00 6.13
2125 2436 3.127533 GCTCATGTGACACCGGCC 61.128 66.667 0.00 0.00 0.00 6.13
2126 2437 2.665000 CTCATGTGACACCGGCCT 59.335 61.111 0.00 0.00 0.00 5.19
2127 2438 1.003355 CTCATGTGACACCGGCCTT 60.003 57.895 0.00 0.00 0.00 4.35
2128 2439 0.606401 CTCATGTGACACCGGCCTTT 60.606 55.000 0.00 0.00 0.00 3.11
2129 2440 0.179004 TCATGTGACACCGGCCTTTT 60.179 50.000 0.00 0.00 0.00 2.27
2130 2441 0.039256 CATGTGACACCGGCCTTTTG 60.039 55.000 0.00 0.00 0.00 2.44
2131 2442 1.178534 ATGTGACACCGGCCTTTTGG 61.179 55.000 0.00 0.00 44.18 3.28
2132 2443 1.826487 GTGACACCGGCCTTTTGGT 60.826 57.895 0.00 0.00 42.99 3.67
2133 2444 1.076632 TGACACCGGCCTTTTGGTT 60.077 52.632 0.00 0.00 42.99 3.67
2134 2445 1.104577 TGACACCGGCCTTTTGGTTC 61.105 55.000 0.00 2.44 42.99 3.62
2135 2446 2.125202 GACACCGGCCTTTTGGTTCG 62.125 60.000 0.00 0.00 42.99 3.95
2136 2447 1.894756 CACCGGCCTTTTGGTTCGA 60.895 57.895 0.00 0.00 42.99 3.71
2137 2448 1.599797 ACCGGCCTTTTGGTTCGAG 60.600 57.895 0.00 0.00 42.99 4.04
2138 2449 1.302192 CCGGCCTTTTGGTTCGAGA 60.302 57.895 0.00 0.00 42.99 4.04
2139 2450 0.887387 CCGGCCTTTTGGTTCGAGAA 60.887 55.000 0.00 0.00 42.99 2.87
2140 2451 1.165270 CGGCCTTTTGGTTCGAGAAT 58.835 50.000 0.00 0.00 42.99 2.40
2141 2452 1.135689 CGGCCTTTTGGTTCGAGAATG 60.136 52.381 0.00 0.00 42.99 2.67
2142 2453 1.202348 GGCCTTTTGGTTCGAGAATGG 59.798 52.381 0.00 0.00 42.99 3.16
2143 2454 1.402852 GCCTTTTGGTTCGAGAATGGC 60.403 52.381 11.28 11.28 42.99 4.40
2144 2455 2.162681 CCTTTTGGTTCGAGAATGGCT 58.837 47.619 0.00 0.00 34.07 4.75
2145 2456 2.162408 CCTTTTGGTTCGAGAATGGCTC 59.838 50.000 0.00 0.00 36.10 4.70
2146 2457 2.559698 TTTGGTTCGAGAATGGCTCA 57.440 45.000 0.00 0.00 44.15 4.26
2147 2458 2.787473 TTGGTTCGAGAATGGCTCAT 57.213 45.000 0.00 0.00 44.15 2.90
2148 2459 2.315925 TGGTTCGAGAATGGCTCATC 57.684 50.000 0.00 0.00 44.15 2.92
2149 2460 1.134401 TGGTTCGAGAATGGCTCATCC 60.134 52.381 0.00 0.00 44.15 3.51
2150 2461 1.212616 GTTCGAGAATGGCTCATCCG 58.787 55.000 0.00 0.00 44.15 4.18
2151 2462 0.530650 TTCGAGAATGGCTCATCCGC 60.531 55.000 0.00 0.00 44.15 5.54
2152 2463 1.068753 CGAGAATGGCTCATCCGCT 59.931 57.895 0.00 0.00 44.15 5.52
2153 2464 0.943359 CGAGAATGGCTCATCCGCTC 60.943 60.000 0.00 0.00 44.15 5.03
2154 2465 0.105593 GAGAATGGCTCATCCGCTCA 59.894 55.000 0.00 0.00 43.38 4.26
2155 2466 0.763652 AGAATGGCTCATCCGCTCAT 59.236 50.000 0.00 0.00 37.80 2.90
2156 2467 0.873054 GAATGGCTCATCCGCTCATG 59.127 55.000 0.00 0.00 37.80 3.07
2157 2468 0.182061 AATGGCTCATCCGCTCATGT 59.818 50.000 0.00 0.00 37.80 3.21
2158 2469 0.534427 ATGGCTCATCCGCTCATGTG 60.534 55.000 0.00 0.00 37.80 3.21
2159 2470 1.144716 GGCTCATCCGCTCATGTGA 59.855 57.895 0.00 0.00 0.00 3.58
2260 2818 2.423947 GGGACCATGCCAATCTGATTCT 60.424 50.000 0.00 0.00 0.00 2.40
2261 2819 3.181440 GGGACCATGCCAATCTGATTCTA 60.181 47.826 0.00 0.00 0.00 2.10
2291 2875 8.523915 TTGCATCCTTATACACAATCTGATTT 57.476 30.769 0.00 0.00 0.00 2.17
2293 2877 7.774625 TGCATCCTTATACACAATCTGATTTGA 59.225 33.333 14.92 0.00 0.00 2.69
2416 3033 2.746472 GCTCTCCACCACTTCAACAGTT 60.746 50.000 0.00 0.00 30.92 3.16
2462 3079 5.982890 TTCATTTCTTTCTCCCCATTCAC 57.017 39.130 0.00 0.00 0.00 3.18
2491 3108 5.200368 ACTTGCCTTTTGATTGTTACCAG 57.800 39.130 0.00 0.00 0.00 4.00
2497 3114 5.472137 GCCTTTTGATTGTTACCAGTGTCTA 59.528 40.000 0.00 0.00 0.00 2.59
2551 3169 7.402811 TTCTTTGTCTAGTTATTGTGACACG 57.597 36.000 0.22 0.00 38.87 4.49
2676 3294 6.603599 AGAAGTTTTGAGGCTTAGACAAGTTT 59.396 34.615 0.00 0.00 34.00 2.66
2677 3295 6.378710 AGTTTTGAGGCTTAGACAAGTTTC 57.621 37.500 0.00 0.00 34.00 2.78
2689 3307 9.052080 GCTTAGACAAGTTTCGTTTATTTCATC 57.948 33.333 0.00 0.00 34.00 2.92
2760 3378 6.605594 AGACTTGACTTGACCACCAAAAATAA 59.394 34.615 0.00 0.00 33.76 1.40
2771 3389 7.942341 TGACCACCAAAAATAATGTCTCTACTT 59.058 33.333 0.00 0.00 0.00 2.24
2798 3417 8.532819 TCCTAACAAACTCTTATCTCTCCTTTC 58.467 37.037 0.00 0.00 0.00 2.62
2802 3421 9.634021 AACAAACTCTTATCTCTCCTTTCTTTT 57.366 29.630 0.00 0.00 0.00 2.27
2856 3475 7.833285 TTTTTACTGGTCTTTTCCTATTGCT 57.167 32.000 0.00 0.00 0.00 3.91
2857 3476 7.833285 TTTTACTGGTCTTTTCCTATTGCTT 57.167 32.000 0.00 0.00 0.00 3.91
2858 3477 7.833285 TTTACTGGTCTTTTCCTATTGCTTT 57.167 32.000 0.00 0.00 0.00 3.51
2859 3478 5.712152 ACTGGTCTTTTCCTATTGCTTTG 57.288 39.130 0.00 0.00 0.00 2.77
2860 3479 5.385198 ACTGGTCTTTTCCTATTGCTTTGA 58.615 37.500 0.00 0.00 0.00 2.69
2902 3521 7.240414 GTATCTTCTTTGATACTGCTGGTTC 57.760 40.000 7.24 0.00 43.11 3.62
3060 3680 5.987098 AGTCTGTGTCTATTGCTGATGATT 58.013 37.500 0.00 0.00 0.00 2.57
3076 3696 5.948842 TGATGATTGAATGATGTCCATCCT 58.051 37.500 4.90 0.00 37.02 3.24
3139 3759 4.704833 CAGGCCCACACTGGTCGG 62.705 72.222 0.00 0.00 35.17 4.79
3141 3761 4.699522 GGCCCACACTGGTCGGTC 62.700 72.222 0.00 0.00 35.17 4.79
3152 3772 1.227674 GGTCGGTCATGCCAGGATC 60.228 63.158 0.00 0.00 36.97 3.36
3202 3841 1.327303 TGGCATTCCCAAAGTGACAC 58.673 50.000 0.00 0.00 41.82 3.67
3205 3844 1.993956 CATTCCCAAAGTGACACCCA 58.006 50.000 0.84 0.00 0.00 4.51
3278 3919 6.486657 CACTAGAAATGTTTCCAGACTTCCAA 59.513 38.462 7.72 0.00 37.92 3.53
3304 3951 0.411058 ATGGCCTTTGAAGAGCCCTT 59.589 50.000 3.32 0.00 39.88 3.95
3325 3972 1.299648 CGGGGAAGTCATGAAGCCA 59.700 57.895 0.00 0.00 0.00 4.75
3431 4078 9.057089 CAACAAGATACTTTGGGTAGGATAATC 57.943 37.037 0.00 0.00 33.51 1.75
3458 4107 1.040646 GCTCGGGGATATGTCACTCA 58.959 55.000 0.00 0.00 0.00 3.41
3527 4177 4.323562 GCTTGGGCTTAGGAAACTTCTCTA 60.324 45.833 0.00 0.00 37.41 2.43
3531 4181 7.504926 TGGGCTTAGGAAACTTCTCTATTTA 57.495 36.000 0.00 0.00 43.67 1.40
3611 4265 8.026607 TCCCAAATTATCTTTCTTTTTGCTACG 58.973 33.333 0.00 0.00 0.00 3.51
3617 4271 1.530323 TTCTTTTTGCTACGCCCTCC 58.470 50.000 0.00 0.00 0.00 4.30
3637 4291 8.038944 GCCCTCCGTTCATAAATATAAGATGTA 58.961 37.037 0.00 0.00 0.00 2.29
3684 4338 7.164122 ACATACAGACTGAAATGAGTGAACAT 58.836 34.615 21.47 0.00 0.00 2.71
3686 4340 9.154847 CATACAGACTGAAATGAGTGAACATAA 57.845 33.333 10.08 0.00 0.00 1.90
3724 4378 8.037758 AGCCTATATACATCCGAATCAGAAAAG 58.962 37.037 0.00 0.00 0.00 2.27
3769 4424 4.939439 GTGAACGGTGGGAGTATTAAACAT 59.061 41.667 0.00 0.00 0.00 2.71
3770 4425 6.108015 GTGAACGGTGGGAGTATTAAACATA 58.892 40.000 0.00 0.00 0.00 2.29
3898 4559 4.657013 AGTCCATTCCTTGAAACTTCTCC 58.343 43.478 0.00 0.00 0.00 3.71
3903 4564 5.513788 CCATTCCTTGAAACTTCTCCTCTGA 60.514 44.000 0.00 0.00 0.00 3.27
4086 4753 7.437713 TCAACCAAATATCAGATCTGGTAGT 57.562 36.000 22.42 16.36 39.48 2.73
4124 4791 0.036875 AGGGCTGAGCAAGGTGTTAC 59.963 55.000 6.82 0.00 0.00 2.50
4145 4812 1.820519 TGACATGGCATTTTCTCCTGC 59.179 47.619 0.00 0.00 37.66 4.85
4152 4819 1.135170 GCATTTTCTCCTGCTCAAGGC 60.135 52.381 0.00 0.00 46.92 4.35
4155 4822 0.326264 TTTCTCCTGCTCAAGGCCTC 59.674 55.000 5.23 0.00 46.92 4.70
4207 4874 1.154150 GCTGTGAACAATCTGCCGC 60.154 57.895 0.00 0.00 0.00 6.53
4219 4886 0.898326 TCTGCCGCTCAGTGGACTTA 60.898 55.000 9.02 0.00 43.32 2.24
4251 4918 9.809096 TCAGTGATAAAGCAAAACACAATAAAA 57.191 25.926 0.00 0.00 34.47 1.52
4313 4980 2.743928 GCCTGCAGTTCGTCCCAG 60.744 66.667 13.81 0.00 0.00 4.45
4482 5149 1.145571 AGGGTAGGGTCACTGCAAAA 58.854 50.000 0.00 0.00 32.86 2.44
4489 5156 4.098914 AGGGTCACTGCAAAAACTGATA 57.901 40.909 0.00 0.00 0.00 2.15
4494 5161 5.687285 GGTCACTGCAAAAACTGATAACTTG 59.313 40.000 0.00 0.00 0.00 3.16
4760 5427 3.261580 GGCAGCAATACAATTTCCAACC 58.738 45.455 0.00 0.00 0.00 3.77
4813 5480 2.879756 GCTATGGTTGACTTGCTTGGGA 60.880 50.000 0.00 0.00 0.00 4.37
4875 5542 3.419793 TGGCACAGAAACCCAGAAG 57.580 52.632 0.00 0.00 0.00 2.85
5045 5713 0.313672 TTCAACGGCAAATCTGTGGC 59.686 50.000 0.00 0.00 40.55 5.01
5186 5854 3.633525 TCAAGCATGGGCAAGATGTATTC 59.366 43.478 0.00 0.00 44.61 1.75
5561 6229 2.082437 GATGACGCACGATTCGCAGG 62.082 60.000 5.86 0.00 0.00 4.85
5575 6243 4.698201 TTCGCAGGAATAATACATGGGA 57.302 40.909 0.00 0.00 38.69 4.37
5638 6306 2.030562 CCTTTGGTGACGAGGCGT 59.969 61.111 0.00 0.00 45.10 5.68
5641 6309 0.319211 CTTTGGTGACGAGGCGTGTA 60.319 55.000 0.00 0.00 41.37 2.90
5675 6343 3.359033 TCATGAAGGCTGAAAGATTGGG 58.641 45.455 0.00 0.00 34.07 4.12
5688 6356 2.823959 AGATTGGGCCACACATCAAAT 58.176 42.857 16.84 1.31 0.00 2.32
5690 6358 3.701040 AGATTGGGCCACACATCAAATAC 59.299 43.478 16.84 0.00 0.00 1.89
5700 6368 3.918591 ACACATCAAATACGAGTCGTGTC 59.081 43.478 27.85 0.00 41.39 3.67
5901 6572 2.674380 GGCTCCACTGGGCACAAG 60.674 66.667 9.84 0.00 0.00 3.16
6042 6713 1.153469 GCACTGGGCTAGAGACTGC 60.153 63.158 4.33 0.00 40.25 4.40
6087 6758 2.419324 CTCTTCTGCATCCAAAGCTCAC 59.581 50.000 0.00 0.00 0.00 3.51
6133 6804 1.203523 GGCACTGGTCTAGAGACTGTG 59.796 57.143 20.81 20.81 44.20 3.66
6225 6903 0.251341 ATCAGTTTGGGCACTGTCCC 60.251 55.000 0.00 7.99 44.10 4.46
6251 6929 2.747443 GCCCAGCCCCCTACTCTTC 61.747 68.421 0.00 0.00 0.00 2.87
6499 7223 4.077822 GCTACCTACGTATGTATGGACCT 58.922 47.826 10.58 0.00 0.00 3.85
6585 7314 1.136565 CTGGTATTTTGCGGTGCGG 59.863 57.895 0.00 0.00 0.00 5.69
6691 7455 5.625197 GCATTGCATATTTTCAGTTGGACCT 60.625 40.000 3.15 0.00 0.00 3.85
6745 7511 2.574955 GGAGAGTCACCGTGCCACT 61.575 63.158 0.00 0.00 0.00 4.00
6746 7512 1.373497 GAGAGTCACCGTGCCACTG 60.373 63.158 0.00 0.00 0.00 3.66
6786 7552 1.224592 GATCCATGGTCCAACGGCT 59.775 57.895 12.58 0.00 0.00 5.52
6826 7592 2.511218 CTCAATCCTCCAATCCTCCCAA 59.489 50.000 0.00 0.00 0.00 4.12
6866 7640 1.069568 CGAAGACGAGATCCTGATCCG 60.070 57.143 13.07 13.07 42.66 4.18
6898 7672 2.089980 GGAACTCACAGCATGCTGAAT 58.910 47.619 45.50 27.15 46.30 2.57
6907 7681 1.065491 AGCATGCTGAATACGAACCCA 60.065 47.619 21.98 0.00 0.00 4.51
6908 7682 1.064060 GCATGCTGAATACGAACCCAC 59.936 52.381 11.37 0.00 0.00 4.61
6947 7738 3.353029 CATGTTGGCACGGTGCGA 61.353 61.111 25.24 19.99 46.21 5.10
7014 7923 3.648982 CCGTTGCGCTGTTGAGCA 61.649 61.111 9.73 0.00 46.62 4.26
7018 7927 3.569902 TGCGCTGTTGAGCATCTG 58.430 55.556 9.73 0.00 46.62 2.90
7019 7928 2.099831 GCGCTGTTGAGCATCTGC 59.900 61.111 0.00 0.00 46.62 4.26
7020 7929 2.398429 CGCTGTTGAGCATCTGCG 59.602 61.111 14.98 14.98 46.62 5.18
7022 7931 2.758089 GCTGTTGAGCATCTGCGGG 61.758 63.158 0.00 0.00 45.46 6.13
7037 7997 2.657237 GGGCGGTCCTCATATCCG 59.343 66.667 0.00 0.00 45.94 4.18
7046 8006 3.243907 GGTCCTCATATCCGTCCTTCAAG 60.244 52.174 0.00 0.00 0.00 3.02
7052 8012 2.698855 ATCCGTCCTTCAAGTCCATG 57.301 50.000 0.00 0.00 0.00 3.66
7053 8013 1.348064 TCCGTCCTTCAAGTCCATGT 58.652 50.000 0.00 0.00 0.00 3.21
7069 8029 5.069914 AGTCCATGTAAGCCATATAACGTGA 59.930 40.000 0.00 0.00 31.86 4.35
7132 8093 4.083110 GCATCATATCATACAACACAGGGC 60.083 45.833 0.00 0.00 0.00 5.19
7154 8115 6.748198 GGGCATTAAAATTTTGCACAATCATG 59.252 34.615 13.76 1.62 39.58 3.07
7156 8117 6.251801 GCATTAAAATTTTGCACAATCATGCC 59.748 34.615 13.76 4.65 45.50 4.40
7225 8189 7.464830 TGCTAGCAAGATCGACTAATTAAAC 57.535 36.000 16.84 0.00 0.00 2.01
7237 8201 2.844122 AATTAAACGAAGATGGGCGC 57.156 45.000 0.00 0.00 0.00 6.53
7238 8202 1.021968 ATTAAACGAAGATGGGCGCC 58.978 50.000 21.18 21.18 0.00 6.53
7239 8203 1.363145 TTAAACGAAGATGGGCGCCG 61.363 55.000 22.54 9.60 0.00 6.46
7240 8204 2.228389 TAAACGAAGATGGGCGCCGA 62.228 55.000 22.54 19.14 0.00 5.54
7241 8205 2.869503 AAACGAAGATGGGCGCCGAT 62.870 55.000 25.12 25.12 0.00 4.18
7242 8206 2.588877 CGAAGATGGGCGCCGATT 60.589 61.111 25.58 11.45 0.00 3.34
7243 8207 2.180204 CGAAGATGGGCGCCGATTT 61.180 57.895 25.58 17.35 0.00 2.17
7244 8208 1.649267 GAAGATGGGCGCCGATTTC 59.351 57.895 25.58 22.78 0.00 2.17
7245 8209 1.786049 GAAGATGGGCGCCGATTTCC 61.786 60.000 25.58 12.73 0.00 3.13
7246 8210 2.203209 GATGGGCGCCGATTTCCT 60.203 61.111 25.58 2.74 0.00 3.36
7247 8211 2.203209 ATGGGCGCCGATTTCCTC 60.203 61.111 22.54 3.93 0.00 3.71
7248 8212 2.940890 GATGGGCGCCGATTTCCTCA 62.941 60.000 25.58 12.84 0.00 3.86
7249 8213 3.202706 GGGCGCCGATTTCCTCAC 61.203 66.667 22.54 0.00 0.00 3.51
7250 8214 3.202706 GGCGCCGATTTCCTCACC 61.203 66.667 12.58 0.00 0.00 4.02
7251 8215 3.564027 GCGCCGATTTCCTCACCG 61.564 66.667 0.00 0.00 0.00 4.94
7252 8216 2.890474 CGCCGATTTCCTCACCGG 60.890 66.667 0.00 0.00 44.34 5.28
7253 8217 2.267961 GCCGATTTCCTCACCGGT 59.732 61.111 0.00 0.00 43.51 5.28
7254 8218 1.814169 GCCGATTTCCTCACCGGTC 60.814 63.158 2.59 0.00 43.51 4.79
7255 8219 1.153429 CCGATTTCCTCACCGGTCC 60.153 63.158 2.59 0.00 37.40 4.46
7256 8220 1.614241 CCGATTTCCTCACCGGTCCT 61.614 60.000 2.59 0.00 37.40 3.85
7257 8221 0.249398 CGATTTCCTCACCGGTCCTT 59.751 55.000 2.59 0.00 0.00 3.36
7258 8222 1.338769 CGATTTCCTCACCGGTCCTTT 60.339 52.381 2.59 0.00 0.00 3.11
7259 8223 2.791655 GATTTCCTCACCGGTCCTTTT 58.208 47.619 2.59 0.00 0.00 2.27
7260 8224 2.265589 TTTCCTCACCGGTCCTTTTC 57.734 50.000 2.59 0.00 0.00 2.29
7261 8225 1.430992 TTCCTCACCGGTCCTTTTCT 58.569 50.000 2.59 0.00 0.00 2.52
7262 8226 1.430992 TCCTCACCGGTCCTTTTCTT 58.569 50.000 2.59 0.00 0.00 2.52
7263 8227 1.772453 TCCTCACCGGTCCTTTTCTTT 59.228 47.619 2.59 0.00 0.00 2.52
7264 8228 2.173996 TCCTCACCGGTCCTTTTCTTTT 59.826 45.455 2.59 0.00 0.00 2.27
7265 8229 2.293399 CCTCACCGGTCCTTTTCTTTTG 59.707 50.000 2.59 0.00 0.00 2.44
7266 8230 1.679153 TCACCGGTCCTTTTCTTTTGC 59.321 47.619 2.59 0.00 0.00 3.68
7267 8231 0.666374 ACCGGTCCTTTTCTTTTGCG 59.334 50.000 0.00 0.00 0.00 4.85
7268 8232 0.039527 CCGGTCCTTTTCTTTTGCGG 60.040 55.000 0.00 0.00 0.00 5.69
7269 8233 0.666374 CGGTCCTTTTCTTTTGCGGT 59.334 50.000 0.00 0.00 0.00 5.68
7270 8234 1.334689 CGGTCCTTTTCTTTTGCGGTC 60.335 52.381 0.00 0.00 0.00 4.79
7271 8235 1.679153 GGTCCTTTTCTTTTGCGGTCA 59.321 47.619 0.00 0.00 0.00 4.02
7272 8236 2.100087 GGTCCTTTTCTTTTGCGGTCAA 59.900 45.455 0.00 0.00 0.00 3.18
7273 8237 3.372060 GTCCTTTTCTTTTGCGGTCAAG 58.628 45.455 0.00 0.00 33.12 3.02
7274 8238 2.127251 CCTTTTCTTTTGCGGTCAAGC 58.873 47.619 0.00 0.00 33.12 4.01
7275 8239 2.481104 CCTTTTCTTTTGCGGTCAAGCA 60.481 45.455 0.00 0.00 46.54 3.91
7281 8245 2.341911 TGCGGTCAAGCATCGACA 59.658 55.556 0.00 0.00 42.92 4.35
7282 8246 1.737735 TGCGGTCAAGCATCGACAG 60.738 57.895 0.00 0.36 42.92 3.51
7283 8247 3.084579 CGGTCAAGCATCGACAGC 58.915 61.111 3.61 3.61 34.97 4.40
7284 8248 2.456119 CGGTCAAGCATCGACAGCC 61.456 63.158 7.97 0.00 34.97 4.85
7285 8249 2.456119 GGTCAAGCATCGACAGCCG 61.456 63.158 7.97 1.04 34.97 5.52
7293 8257 2.275748 TCGACAGCCGAGGAGGAT 59.724 61.111 0.00 0.00 43.23 3.24
7294 8258 1.824329 TCGACAGCCGAGGAGGATC 60.824 63.158 0.00 0.00 43.23 3.36
7295 8259 2.725008 GACAGCCGAGGAGGATCG 59.275 66.667 0.00 0.00 45.00 3.69
7296 8260 2.043852 ACAGCCGAGGAGGATCGT 60.044 61.111 0.00 0.00 45.00 3.73
7297 8261 1.668101 GACAGCCGAGGAGGATCGTT 61.668 60.000 0.00 0.00 45.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
346 364 7.153217 TCGAGTCTTTGATGTGTCATAGTAA 57.847 36.000 0.00 0.00 35.63 2.24
398 421 5.559148 ATCTTCTCCAACACTTCACTCTT 57.441 39.130 0.00 0.00 0.00 2.85
490 514 7.336396 GTTATACCTATCCAACTCCAGTTTGT 58.664 38.462 0.00 0.00 35.83 2.83
653 716 3.518068 CGCAAAATCCGAGGCCCC 61.518 66.667 0.00 0.00 0.00 5.80
686 751 2.109126 GGATGCCGTCTGGTTGCTC 61.109 63.158 0.00 0.00 37.67 4.26
687 752 2.045926 GGATGCCGTCTGGTTGCT 60.046 61.111 0.00 0.00 37.67 3.91
688 753 3.134127 GGGATGCCGTCTGGTTGC 61.134 66.667 0.00 0.00 37.67 4.17
689 754 1.077501 ATGGGATGCCGTCTGGTTG 60.078 57.895 0.00 0.00 37.67 3.77
690 755 1.077501 CATGGGATGCCGTCTGGTT 60.078 57.895 0.00 0.00 37.67 3.67
691 756 2.591753 CATGGGATGCCGTCTGGT 59.408 61.111 0.00 0.00 37.67 4.00
692 757 2.203252 CCATGGGATGCCGTCTGG 60.203 66.667 2.85 0.00 38.77 3.86
693 758 2.203252 CCCATGGGATGCCGTCTG 60.203 66.667 28.27 0.00 37.50 3.51
694 759 2.366837 TCCCATGGGATGCCGTCT 60.367 61.111 30.62 0.00 39.76 4.18
703 768 1.524621 GCGTGTCTGATCCCATGGG 60.525 63.158 26.30 26.30 0.00 4.00
704 769 1.524621 GGCGTGTCTGATCCCATGG 60.525 63.158 4.14 4.14 0.00 3.66
705 770 1.091771 GTGGCGTGTCTGATCCCATG 61.092 60.000 0.00 0.00 0.00 3.66
706 771 1.221840 GTGGCGTGTCTGATCCCAT 59.778 57.895 0.00 0.00 0.00 4.00
707 772 2.171209 CTGTGGCGTGTCTGATCCCA 62.171 60.000 0.00 0.00 0.00 4.37
708 773 1.448540 CTGTGGCGTGTCTGATCCC 60.449 63.158 0.00 0.00 0.00 3.85
709 774 0.320771 AACTGTGGCGTGTCTGATCC 60.321 55.000 0.00 0.00 0.00 3.36
710 775 1.071605 GAACTGTGGCGTGTCTGATC 58.928 55.000 0.00 0.00 0.00 2.92
711 776 0.392706 TGAACTGTGGCGTGTCTGAT 59.607 50.000 0.00 0.00 0.00 2.90
712 777 0.529773 GTGAACTGTGGCGTGTCTGA 60.530 55.000 0.00 0.00 0.00 3.27
713 778 0.530650 AGTGAACTGTGGCGTGTCTG 60.531 55.000 0.00 0.00 0.00 3.51
714 779 0.249489 GAGTGAACTGTGGCGTGTCT 60.249 55.000 0.00 0.00 0.00 3.41
715 780 1.548973 CGAGTGAACTGTGGCGTGTC 61.549 60.000 0.00 0.00 0.00 3.67
716 781 1.591594 CGAGTGAACTGTGGCGTGT 60.592 57.895 0.00 0.00 0.00 4.49
717 782 2.943345 GCGAGTGAACTGTGGCGTG 61.943 63.158 0.00 0.00 0.00 5.34
718 783 2.661866 GCGAGTGAACTGTGGCGT 60.662 61.111 0.00 0.00 0.00 5.68
719 784 1.771073 TTTGCGAGTGAACTGTGGCG 61.771 55.000 0.00 0.00 0.00 5.69
720 785 0.040958 CTTTGCGAGTGAACTGTGGC 60.041 55.000 0.00 0.00 0.00 5.01
721 786 0.040958 GCTTTGCGAGTGAACTGTGG 60.041 55.000 0.00 0.00 0.00 4.17
722 787 3.444657 GCTTTGCGAGTGAACTGTG 57.555 52.632 0.00 0.00 0.00 3.66
741 806 2.430921 AGCAGACGCGTGTGTAGC 60.431 61.111 33.02 21.46 45.49 3.58
742 807 1.801913 GGAGCAGACGCGTGTGTAG 60.802 63.158 33.02 12.69 45.49 2.74
791 857 2.970324 GAAGCCGCGGTTGTGTCA 60.970 61.111 28.70 0.00 0.00 3.58
903 971 2.047274 ACGGGTGCGAATGTGAGG 60.047 61.111 0.00 0.00 0.00 3.86
925 994 0.325203 AGGTTCAGGGAGAGGAGAGC 60.325 60.000 0.00 0.00 0.00 4.09
1188 1283 2.276116 GGTCCTGACGAGGCTGTCA 61.276 63.158 15.61 15.61 46.15 3.58
1307 1402 1.063006 CAACCAATGCAGATCGCGG 59.937 57.895 6.13 0.00 46.97 6.46
1308 1403 0.247814 GACAACCAATGCAGATCGCG 60.248 55.000 0.00 0.00 46.97 5.87
1418 1514 0.611714 ACCGCACGAGGGAAATTAGT 59.388 50.000 0.00 0.00 35.02 2.24
1455 1551 1.445238 GAGCCATAGATCTCGCGGC 60.445 63.158 17.98 17.98 43.31 6.53
1475 1571 0.320073 CATGCACCAGCCACAAAAGG 60.320 55.000 0.00 0.00 41.13 3.11
1504 1600 2.092323 GGAATGAACTACAAGCCCACC 58.908 52.381 0.00 0.00 0.00 4.61
1506 1602 2.354704 CGAGGAATGAACTACAAGCCCA 60.355 50.000 0.00 0.00 0.00 5.36
1560 1656 3.314913 TGTACACATCACAGCAAAACCAG 59.685 43.478 0.00 0.00 0.00 4.00
1609 1835 3.554524 CACATAACTCCGTTGCAACTTG 58.445 45.455 26.09 17.14 0.00 3.16
1630 1856 2.930040 CCATCATCGCCGTATATTGACC 59.070 50.000 0.00 0.00 0.00 4.02
1636 1862 2.097036 CCTACCCATCATCGCCGTATA 58.903 52.381 0.00 0.00 0.00 1.47
1640 1866 1.300931 CACCTACCCATCATCGCCG 60.301 63.158 0.00 0.00 0.00 6.46
1645 1871 2.119495 GACTGGACACCTACCCATCAT 58.881 52.381 0.00 0.00 0.00 2.45
1646 1872 1.078823 AGACTGGACACCTACCCATCA 59.921 52.381 0.00 0.00 0.00 3.07
1690 1946 6.183360 GCAGGCAAGGTTATGATAACTGATTT 60.183 38.462 14.34 3.13 0.00 2.17
1697 1953 3.660970 TGGCAGGCAAGGTTATGATAA 57.339 42.857 0.00 0.00 0.00 1.75
1703 1959 1.616725 CCAGATTGGCAGGCAAGGTTA 60.617 52.381 15.57 0.00 0.00 2.85
1712 1968 3.317430 GCTATTTCCTTCCAGATTGGCAG 59.683 47.826 0.00 0.00 37.47 4.85
1714 1970 3.560105 AGCTATTTCCTTCCAGATTGGC 58.440 45.455 0.00 0.00 37.47 4.52
1718 1974 4.223923 CCGGATAGCTATTTCCTTCCAGAT 59.776 45.833 7.87 0.00 0.00 2.90
1720 1976 3.325135 ACCGGATAGCTATTTCCTTCCAG 59.675 47.826 9.46 0.00 0.00 3.86
1756 2012 2.687935 ACAAATGCACAAGTCGGTCTTT 59.312 40.909 0.00 0.00 33.63 2.52
1995 2306 4.739716 GCAGACATTAAACCACACAAACAG 59.260 41.667 0.00 0.00 0.00 3.16
2076 2387 1.526575 AAAAGGCAGGCGTGTCATGG 61.527 55.000 14.20 0.00 0.00 3.66
2077 2388 0.387622 CAAAAGGCAGGCGTGTCATG 60.388 55.000 14.20 5.50 0.00 3.07
2118 2429 1.852067 CTCGAACCAAAAGGCCGGTG 61.852 60.000 1.90 0.00 35.08 4.94
2119 2430 1.599797 CTCGAACCAAAAGGCCGGT 60.600 57.895 1.90 0.00 36.98 5.28
2120 2431 0.887387 TTCTCGAACCAAAAGGCCGG 60.887 55.000 0.00 0.00 0.00 6.13
2121 2432 1.135689 CATTCTCGAACCAAAAGGCCG 60.136 52.381 0.00 0.00 0.00 6.13
2122 2433 1.202348 CCATTCTCGAACCAAAAGGCC 59.798 52.381 0.00 0.00 0.00 5.19
2123 2434 1.402852 GCCATTCTCGAACCAAAAGGC 60.403 52.381 0.00 0.00 0.00 4.35
2124 2435 2.162408 GAGCCATTCTCGAACCAAAAGG 59.838 50.000 0.00 0.00 31.20 3.11
2125 2436 2.813754 TGAGCCATTCTCGAACCAAAAG 59.186 45.455 0.00 0.00 44.86 2.27
2126 2437 2.857483 TGAGCCATTCTCGAACCAAAA 58.143 42.857 0.00 0.00 44.86 2.44
2127 2438 2.559698 TGAGCCATTCTCGAACCAAA 57.440 45.000 0.00 0.00 44.86 3.28
2128 2439 2.632377 GATGAGCCATTCTCGAACCAA 58.368 47.619 0.00 0.00 44.86 3.67
2129 2440 1.134401 GGATGAGCCATTCTCGAACCA 60.134 52.381 0.00 0.00 44.86 3.67
2130 2441 1.587547 GGATGAGCCATTCTCGAACC 58.412 55.000 0.00 0.00 44.86 3.62
2131 2442 1.212616 CGGATGAGCCATTCTCGAAC 58.787 55.000 0.00 0.00 44.86 3.95
2132 2443 0.530650 GCGGATGAGCCATTCTCGAA 60.531 55.000 0.00 0.00 44.86 3.71
2133 2444 1.068083 GCGGATGAGCCATTCTCGA 59.932 57.895 0.00 0.00 44.86 4.04
2134 2445 0.943359 GAGCGGATGAGCCATTCTCG 60.943 60.000 0.00 0.00 44.86 4.04
2135 2446 0.105593 TGAGCGGATGAGCCATTCTC 59.894 55.000 0.00 0.00 42.23 2.87
2136 2447 0.763652 ATGAGCGGATGAGCCATTCT 59.236 50.000 0.00 0.00 38.01 2.40
2137 2448 0.873054 CATGAGCGGATGAGCCATTC 59.127 55.000 0.00 0.00 38.01 2.67
2138 2449 0.182061 ACATGAGCGGATGAGCCATT 59.818 50.000 0.00 0.00 38.01 3.16
2139 2450 0.534427 CACATGAGCGGATGAGCCAT 60.534 55.000 0.00 0.00 38.01 4.40
2140 2451 1.153309 CACATGAGCGGATGAGCCA 60.153 57.895 0.00 0.00 38.01 4.75
2141 2452 1.144716 TCACATGAGCGGATGAGCC 59.855 57.895 0.00 0.00 38.01 4.70
2142 2453 0.460811 TGTCACATGAGCGGATGAGC 60.461 55.000 0.00 0.00 37.41 4.26
2143 2454 2.014335 TTGTCACATGAGCGGATGAG 57.986 50.000 0.00 0.00 0.00 2.90
2144 2455 2.282407 CATTGTCACATGAGCGGATGA 58.718 47.619 0.00 0.00 0.00 2.92
2145 2456 2.011947 ACATTGTCACATGAGCGGATG 58.988 47.619 0.00 0.77 0.00 3.51
2146 2457 2.011947 CACATTGTCACATGAGCGGAT 58.988 47.619 0.00 0.00 0.00 4.18
2147 2458 1.001860 TCACATTGTCACATGAGCGGA 59.998 47.619 0.00 0.00 0.00 5.54
2148 2459 1.441738 TCACATTGTCACATGAGCGG 58.558 50.000 0.00 0.00 0.00 5.52
2149 2460 3.752412 ATTCACATTGTCACATGAGCG 57.248 42.857 0.00 0.00 0.00 5.03
2150 2461 5.808042 AGTATTCACATTGTCACATGAGC 57.192 39.130 0.00 0.00 0.00 4.26
2151 2462 9.755804 ATACTAGTATTCACATTGTCACATGAG 57.244 33.333 9.71 0.00 0.00 2.90
2152 2463 9.533253 CATACTAGTATTCACATTGTCACATGA 57.467 33.333 12.87 0.00 0.00 3.07
2153 2464 9.317936 ACATACTAGTATTCACATTGTCACATG 57.682 33.333 12.87 1.52 0.00 3.21
2225 2776 1.005450 TGGTCCCCAATAGGCACTTTC 59.995 52.381 0.00 0.00 41.75 2.62
2416 3033 6.428083 TCTGGAGGTTAGTTTGATAACACA 57.572 37.500 0.00 0.00 37.38 3.72
2421 3038 9.396022 GAAATGAATCTGGAGGTTAGTTTGATA 57.604 33.333 0.00 0.00 0.00 2.15
2462 3079 1.028905 TCAAAAGGCAAGTTCCCACG 58.971 50.000 0.00 0.00 0.00 4.94
2602 3220 3.753272 ACAGGAGTGTTGTTATGCATGTC 59.247 43.478 10.16 2.63 30.30 3.06
2639 3257 2.341846 AAACTTCTCTTCCACGCCAA 57.658 45.000 0.00 0.00 0.00 4.52
2676 3294 6.526325 CCAAAATCAAGCGATGAAATAAACGA 59.474 34.615 0.00 0.00 42.54 3.85
2677 3295 6.307800 ACCAAAATCAAGCGATGAAATAAACG 59.692 34.615 0.00 0.00 42.54 3.60
2689 3307 2.811431 TGTACTCCACCAAAATCAAGCG 59.189 45.455 0.00 0.00 0.00 4.68
2760 3378 8.196378 AGAGTTTGTTAGGAAAGTAGAGACAT 57.804 34.615 0.00 0.00 0.00 3.06
2771 3389 8.437274 AAGGAGAGATAAGAGTTTGTTAGGAA 57.563 34.615 0.00 0.00 0.00 3.36
2834 3453 7.504238 TCAAAGCAATAGGAAAAGACCAGTAAA 59.496 33.333 0.00 0.00 0.00 2.01
2835 3454 7.001674 TCAAAGCAATAGGAAAAGACCAGTAA 58.998 34.615 0.00 0.00 0.00 2.24
2837 3456 5.241728 GTCAAAGCAATAGGAAAAGACCAGT 59.758 40.000 0.00 0.00 0.00 4.00
2838 3457 5.474876 AGTCAAAGCAATAGGAAAAGACCAG 59.525 40.000 0.00 0.00 0.00 4.00
2839 3458 5.385198 AGTCAAAGCAATAGGAAAAGACCA 58.615 37.500 0.00 0.00 0.00 4.02
2840 3459 5.966742 AGTCAAAGCAATAGGAAAAGACC 57.033 39.130 0.00 0.00 0.00 3.85
2841 3460 8.499403 AGATAGTCAAAGCAATAGGAAAAGAC 57.501 34.615 0.00 0.00 0.00 3.01
2842 3461 9.520515 AAAGATAGTCAAAGCAATAGGAAAAGA 57.479 29.630 0.00 0.00 0.00 2.52
2845 3464 9.959721 AGTAAAGATAGTCAAAGCAATAGGAAA 57.040 29.630 0.00 0.00 0.00 3.13
2846 3465 9.959721 AAGTAAAGATAGTCAAAGCAATAGGAA 57.040 29.630 0.00 0.00 0.00 3.36
2847 3466 9.601217 GAAGTAAAGATAGTCAAAGCAATAGGA 57.399 33.333 0.00 0.00 0.00 2.94
2848 3467 9.606631 AGAAGTAAAGATAGTCAAAGCAATAGG 57.393 33.333 0.00 0.00 0.00 2.57
2853 3472 9.998106 ACTAAAGAAGTAAAGATAGTCAAAGCA 57.002 29.630 0.00 0.00 36.36 3.91
2892 3511 1.270907 CCTAGTCAGGAACCAGCAGT 58.729 55.000 0.00 0.00 45.91 4.40
2902 3521 2.555325 TGTAACACACGTCCTAGTCAGG 59.445 50.000 0.00 0.00 44.17 3.86
2949 3568 6.726764 AGGGTTGTAATGTTATGGCCTAAAAA 59.273 34.615 3.32 0.00 0.00 1.94
3060 3680 3.387012 TCCTGAGGATGGACATCATTCA 58.613 45.455 13.72 13.95 38.62 2.57
3138 3758 1.386533 CACTTGATCCTGGCATGACC 58.613 55.000 0.00 0.00 39.84 4.02
3139 3759 0.737219 GCACTTGATCCTGGCATGAC 59.263 55.000 0.00 0.00 0.00 3.06
3140 3760 0.394762 GGCACTTGATCCTGGCATGA 60.395 55.000 0.00 0.00 33.24 3.07
3141 3761 0.681887 TGGCACTTGATCCTGGCATG 60.682 55.000 7.15 0.00 37.99 4.06
3202 3841 1.136110 AGTTTTGTCAACCGCTTTGGG 59.864 47.619 0.00 0.00 44.64 4.12
3205 3844 4.201980 GGTAAGAGTTTTGTCAACCGCTTT 60.202 41.667 5.96 0.00 0.00 3.51
3304 3951 1.299648 CTTCATGACTTCCCCGCCA 59.700 57.895 0.00 0.00 0.00 5.69
3310 3957 0.322816 TGGCTGGCTTCATGACTTCC 60.323 55.000 0.00 0.00 0.00 3.46
3431 4078 1.867233 CATATCCCCGAGCTTCAAACG 59.133 52.381 0.00 0.00 0.00 3.60
3540 4190 7.571357 AGGGACCCTTATACTCTGCTAAAATAA 59.429 37.037 7.44 0.00 0.00 1.40
3541 4191 7.080353 AGGGACCCTTATACTCTGCTAAAATA 58.920 38.462 7.44 0.00 0.00 1.40
3542 4192 5.911766 AGGGACCCTTATACTCTGCTAAAAT 59.088 40.000 7.44 0.00 0.00 1.82
3611 4265 6.879458 ACATCTTATATTTATGAACGGAGGGC 59.121 38.462 0.00 0.00 0.00 5.19
3700 4354 9.929180 TTCTTTTCTGATTCGGATGTATATAGG 57.071 33.333 0.00 0.00 0.00 2.57
3804 4459 8.277918 AGCAAGAAACCAATAGGATTAGAAGAT 58.722 33.333 0.00 0.00 38.69 2.40
3818 4473 5.815581 ACATACATCCTAGCAAGAAACCAA 58.184 37.500 0.00 0.00 0.00 3.67
4086 4753 1.770658 CTTGACCCATGGATGCCTAGA 59.229 52.381 15.22 0.00 0.00 2.43
4124 4791 2.159282 GCAGGAGAAAATGCCATGTCAG 60.159 50.000 0.00 0.00 36.41 3.51
4152 4819 1.596727 GCAATAGAAGAGCGCAAGAGG 59.403 52.381 11.47 0.00 43.02 3.69
4155 4822 0.302890 CGGCAATAGAAGAGCGCAAG 59.697 55.000 11.47 0.00 43.44 4.01
4207 4874 6.925211 TCACTGAACTATTAAGTCCACTGAG 58.075 40.000 0.00 0.00 33.75 3.35
4219 4886 8.629158 TGTGTTTTGCTTTATCACTGAACTATT 58.371 29.630 0.00 0.00 0.00 1.73
4231 4898 8.443953 TTGGCTTTTATTGTGTTTTGCTTTAT 57.556 26.923 0.00 0.00 0.00 1.40
4251 4918 0.898789 AAAGCTGCTGCATCTTGGCT 60.899 50.000 18.28 12.87 42.74 4.75
4333 5000 2.359107 CGAAAGCTCTGCAGGGCA 60.359 61.111 38.55 7.45 36.92 5.36
4345 5012 1.571460 GTGGCTGCTGACACGAAAG 59.429 57.895 14.30 0.00 42.96 2.62
4392 5059 1.453155 AAGGAGTGCCATTGTTAGCG 58.547 50.000 0.00 0.00 36.29 4.26
4482 5149 2.301870 TCTCCCGTGCAAGTTATCAGTT 59.698 45.455 0.00 0.00 0.00 3.16
4489 5156 2.032681 GGCTCTCCCGTGCAAGTT 59.967 61.111 0.00 0.00 0.00 2.66
4494 5161 1.069935 GGATAAGGCTCTCCCGTGC 59.930 63.158 5.03 0.00 39.21 5.34
4709 5376 0.588252 GCTGTCGTCACTGCAACAAT 59.412 50.000 1.92 0.00 44.73 2.71
4760 5427 9.476202 TGTCCATATTTACTATTTCACTGATCG 57.524 33.333 0.00 0.00 0.00 3.69
4813 5480 5.882557 CAGAAGGGCTAACTGATGTAACAAT 59.117 40.000 0.00 0.00 34.07 2.71
5065 5733 8.593945 TCAGGCAAGTCTGGATTTATTTTTAT 57.406 30.769 1.37 0.00 35.58 1.40
5186 5854 1.403679 TCTGTGCAACTGTTTTTCGGG 59.596 47.619 0.00 0.00 38.04 5.14
5410 6078 5.633601 TCTTACACTGAAACAAGTAGCGATG 59.366 40.000 0.00 0.00 0.00 3.84
5415 6083 6.591834 CCTGGATCTTACACTGAAACAAGTAG 59.408 42.308 0.00 0.00 0.00 2.57
5561 6229 7.119846 GCTGATAACAGGTCCCATGTATTATTC 59.880 40.741 1.85 0.00 43.62 1.75
5575 6243 5.769662 TCAACAGAAATTGCTGATAACAGGT 59.230 36.000 20.85 0.00 43.62 4.00
5638 6306 4.758773 TCATGATGCTGACCTTCATACA 57.241 40.909 0.00 0.00 36.50 2.29
5641 6309 3.552875 CCTTCATGATGCTGACCTTCAT 58.447 45.455 0.00 0.00 38.47 2.57
5675 6343 2.029244 CGACTCGTATTTGATGTGTGGC 59.971 50.000 0.00 0.00 0.00 5.01
5688 6356 4.473199 CAAGATCAAAGACACGACTCGTA 58.527 43.478 3.20 0.00 38.32 3.43
5690 6358 2.663602 CCAAGATCAAAGACACGACTCG 59.336 50.000 0.00 0.00 0.00 4.18
5700 6368 5.348986 CCATCAAATGCTCCAAGATCAAAG 58.651 41.667 0.00 0.00 0.00 2.77
6013 6684 2.124403 CCAGTGCCCAGGCTGATC 60.124 66.667 17.94 7.55 42.51 2.92
6225 6903 4.729918 GGGGCTGGGCAGTCACTG 62.730 72.222 0.00 0.00 32.68 3.66
6251 6929 3.118454 CGCCGTTACCACCTGCAG 61.118 66.667 6.78 6.78 0.00 4.41
6366 7073 7.624344 GCAGAATACTTCAGACATTACCAACAC 60.624 40.741 0.00 0.00 0.00 3.32
6441 7158 3.120086 AAGCCACACGGAGCAGGTT 62.120 57.895 0.00 0.00 0.00 3.50
6549 7278 4.827692 ACCAGAAATGCAACGACATAGTA 58.172 39.130 0.00 0.00 0.00 1.82
6550 7279 3.674997 ACCAGAAATGCAACGACATAGT 58.325 40.909 0.00 0.00 0.00 2.12
6551 7280 5.991328 ATACCAGAAATGCAACGACATAG 57.009 39.130 0.00 0.00 0.00 2.23
6585 7314 6.638468 GCATAGAGGCATAATAACAAGCAAAC 59.362 38.462 0.00 0.00 0.00 2.93
6691 7455 6.527057 TGATGCATCATCCAAATAACAACA 57.473 33.333 25.42 0.00 39.87 3.33
6745 7511 3.138304 GACTTGCAATGTACACTCCACA 58.862 45.455 0.00 0.00 0.00 4.17
6746 7512 2.157668 CGACTTGCAATGTACACTCCAC 59.842 50.000 0.00 0.00 0.00 4.02
6755 7521 2.019249 CATGGATCCGACTTGCAATGT 58.981 47.619 7.39 0.00 0.00 2.71
6799 7565 2.947938 ATTGGAGGATTGAGCGGGCG 62.948 60.000 0.00 0.00 0.00 6.13
6801 7567 0.536006 GGATTGGAGGATTGAGCGGG 60.536 60.000 0.00 0.00 0.00 6.13
6866 7640 1.446966 GAGTTCCACGAGAGGCAGC 60.447 63.158 0.00 0.00 0.00 5.25
6898 7672 1.535204 GGTTCCTCCGTGGGTTCGTA 61.535 60.000 0.00 0.00 36.20 3.43
6907 7681 2.584391 GCTGGTCTGGTTCCTCCGT 61.584 63.158 0.00 0.00 39.52 4.69
6908 7682 2.232298 GAGCTGGTCTGGTTCCTCCG 62.232 65.000 0.00 0.00 39.52 4.63
6955 7746 4.156622 CATGACTGCTGCGTGCCG 62.157 66.667 2.10 0.00 42.00 5.69
6990 7899 3.276091 CAGCGCAACGGTCCAACA 61.276 61.111 11.47 0.00 34.62 3.33
7018 7927 2.048127 GATATGAGGACCGCCCGC 60.048 66.667 0.00 0.00 40.87 6.13
7019 7928 2.657237 GGATATGAGGACCGCCCG 59.343 66.667 0.00 0.00 40.87 6.13
7020 7929 2.657237 CGGATATGAGGACCGCCC 59.343 66.667 0.00 0.00 40.19 6.13
7025 7934 3.385111 ACTTGAAGGACGGATATGAGGAC 59.615 47.826 0.00 0.00 0.00 3.85
7037 7997 3.010420 GGCTTACATGGACTTGAAGGAC 58.990 50.000 0.00 0.00 0.00 3.85
7046 8006 5.294356 TCACGTTATATGGCTTACATGGAC 58.706 41.667 0.00 0.00 40.82 4.02
7052 8012 6.818416 GTGCTTATCACGTTATATGGCTTAC 58.182 40.000 12.89 4.59 35.76 2.34
7127 8088 5.686159 TTGTGCAAAATTTTAATGCCCTG 57.314 34.783 2.44 0.00 39.31 4.45
7132 8093 6.748198 GGGCATGATTGTGCAAAATTTTAATG 59.252 34.615 2.99 7.23 46.81 1.90
7154 8115 2.416747 GATGAACTTGCTTTTTGGGGC 58.583 47.619 0.00 0.00 0.00 5.80
7156 8117 3.070015 AGTGGATGAACTTGCTTTTTGGG 59.930 43.478 0.00 0.00 0.00 4.12
7208 8172 7.438459 CCCATCTTCGTTTAATTAGTCGATCTT 59.562 37.037 12.41 2.11 32.54 2.40
7225 8189 2.105960 GAAATCGGCGCCCATCTTCG 62.106 60.000 23.46 7.32 0.00 3.79
7237 8201 1.153429 GGACCGGTGAGGAAATCGG 60.153 63.158 14.63 0.00 45.00 4.18
7238 8202 0.249398 AAGGACCGGTGAGGAAATCG 59.751 55.000 14.63 0.00 45.00 3.34
7239 8203 2.491675 AAAGGACCGGTGAGGAAATC 57.508 50.000 14.63 0.00 45.00 2.17
7240 8204 2.375509 AGAAAAGGACCGGTGAGGAAAT 59.624 45.455 14.63 0.00 45.00 2.17
7241 8205 1.772453 AGAAAAGGACCGGTGAGGAAA 59.228 47.619 14.63 0.00 45.00 3.13
7242 8206 1.430992 AGAAAAGGACCGGTGAGGAA 58.569 50.000 14.63 0.00 45.00 3.36
7243 8207 1.430992 AAGAAAAGGACCGGTGAGGA 58.569 50.000 14.63 0.00 45.00 3.71
7245 8209 2.287608 GCAAAAGAAAAGGACCGGTGAG 60.288 50.000 14.63 0.00 0.00 3.51
7246 8210 1.679153 GCAAAAGAAAAGGACCGGTGA 59.321 47.619 14.63 0.00 0.00 4.02
7247 8211 1.599419 CGCAAAAGAAAAGGACCGGTG 60.599 52.381 14.63 0.00 0.00 4.94
7248 8212 0.666374 CGCAAAAGAAAAGGACCGGT 59.334 50.000 6.92 6.92 0.00 5.28
7249 8213 0.039527 CCGCAAAAGAAAAGGACCGG 60.040 55.000 0.00 0.00 0.00 5.28
7250 8214 0.666374 ACCGCAAAAGAAAAGGACCG 59.334 50.000 0.00 0.00 0.00 4.79
7251 8215 1.679153 TGACCGCAAAAGAAAAGGACC 59.321 47.619 0.00 0.00 0.00 4.46
7252 8216 3.372060 CTTGACCGCAAAAGAAAAGGAC 58.628 45.455 0.00 0.00 32.73 3.85
7253 8217 2.223711 GCTTGACCGCAAAAGAAAAGGA 60.224 45.455 0.00 0.00 32.73 3.36
7254 8218 2.127251 GCTTGACCGCAAAAGAAAAGG 58.873 47.619 0.00 0.00 32.73 3.11
7255 8219 2.808244 TGCTTGACCGCAAAAGAAAAG 58.192 42.857 0.00 0.00 36.89 2.27
7256 8220 2.949451 TGCTTGACCGCAAAAGAAAA 57.051 40.000 0.00 0.00 36.89 2.29
7257 8221 2.604373 CGATGCTTGACCGCAAAAGAAA 60.604 45.455 0.00 0.00 44.06 2.52
7258 8222 1.069296 CGATGCTTGACCGCAAAAGAA 60.069 47.619 0.00 0.00 44.06 2.52
7259 8223 0.516877 CGATGCTTGACCGCAAAAGA 59.483 50.000 0.00 0.00 44.06 2.52
7260 8224 0.516877 TCGATGCTTGACCGCAAAAG 59.483 50.000 0.00 0.00 44.06 2.27
7261 8225 0.237235 GTCGATGCTTGACCGCAAAA 59.763 50.000 0.00 0.00 44.06 2.44
7262 8226 0.882484 TGTCGATGCTTGACCGCAAA 60.882 50.000 0.00 0.00 44.06 3.68
7263 8227 1.291184 CTGTCGATGCTTGACCGCAA 61.291 55.000 0.00 0.00 44.06 4.85
7264 8228 1.737735 CTGTCGATGCTTGACCGCA 60.738 57.895 0.00 0.00 45.10 5.69
7265 8229 3.084579 CTGTCGATGCTTGACCGC 58.915 61.111 0.00 0.00 35.46 5.68
7266 8230 2.456119 GGCTGTCGATGCTTGACCG 61.456 63.158 12.00 0.00 35.46 4.79
7267 8231 2.456119 CGGCTGTCGATGCTTGACC 61.456 63.158 0.00 0.00 42.43 4.02
7268 8232 1.446099 TCGGCTGTCGATGCTTGAC 60.446 57.895 0.00 0.00 43.74 3.18
7269 8233 2.969827 TCGGCTGTCGATGCTTGA 59.030 55.556 0.00 8.38 43.74 3.02
7276 8240 1.824329 GATCCTCCTCGGCTGTCGA 60.824 63.158 3.65 3.65 46.77 4.20
7277 8241 2.725008 GATCCTCCTCGGCTGTCG 59.275 66.667 0.00 0.00 40.90 4.35
7278 8242 1.668101 AACGATCCTCCTCGGCTGTC 61.668 60.000 0.00 0.00 42.88 3.51
7279 8243 1.682684 AACGATCCTCCTCGGCTGT 60.683 57.895 0.00 0.00 42.88 4.40
7280 8244 3.211288 AACGATCCTCCTCGGCTG 58.789 61.111 0.00 0.00 42.88 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.