AutoCloner

Multiple sequence alignment - TraesCS1A01G104200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G104200	chr1A	100.000	3619	0	0	1	3619	100038055	100041673	0.000000e+00	6684.0
1	TraesCS1A01G104200	chr1A	89.144	1262	107	16	654	1892	100001832	100003086	0.000000e+00	1544.0
2	TraesCS1A01G104200	chr1A	93.502	554	34	1	2094	2645	100003297	100003850	0.000000e+00	822.0
3	TraesCS1A01G104200	chr1A	83.224	304	42	6	3142	3439	537048051	537047751	1.660000e-68	270.0
4	TraesCS1A01G104200	chr1A	89.873	158	16	0	26	183	99999833	99999990	1.700000e-48	204.0
5	TraesCS1A01G104200	chr1D	93.650	3638	133	47	20	3616	81480791	81484371	0.000000e+00	5349.0
6	TraesCS1A01G104200	chr1D	85.297	1952	197	47	199	2082	81366117	81368046	0.000000e+00	1932.0
7	TraesCS1A01G104200	chr1D	93.805	565	32	2	2094	2656	81368030	81368593	0.000000e+00	846.0
8	TraesCS1A01G104200	chr1D	84.211	285	38	4	3143	3421	14667666	14667383	1.660000e-68	270.0
9	TraesCS1A01G104200	chr1D	90.854	164	15	0	20	183	81365970	81366133	1.690000e-53	220.0
10	TraesCS1A01G104200	chr1B	92.555	3049	155	32	19	3014	136166714	136169743	0.000000e+00	4307.0
11	TraesCS1A01G104200	chr1B	88.195	1889	164	26	244	2082	136062816	136064695	0.000000e+00	2198.0
12	TraesCS1A01G104200	chr1B	84.739	1494	156	40	199	1628	134722684	134724169	0.000000e+00	1430.0
13	TraesCS1A01G104200	chr1B	92.619	569	35	5	2094	2656	134731567	134732134	0.000000e+00	811.0
14	TraesCS1A01G104200	chr1B	92.599	554	39	1	2094	2645	136064679	136065232	0.000000e+00	795.0
15	TraesCS1A01G104200	chr1B	84.989	453	41	8	1641	2082	134731147	134731583	5.550000e-118	435.0
16	TraesCS1A01G104200	chr1B	90.066	151	15	0	33	183	134722550	134722700	2.850000e-46	196.0
17	TraesCS1A01G104200	chr2B	84.106	302	40	6	3142	3439	363444124	363444421	5.910000e-73	285.0
18	TraesCS1A01G104200	chr3D	83.553	304	41	6	3143	3441	525540273	525540572	3.560000e-70	276.0
19	TraesCS1A01G104200	chr3D	82.295	305	47	5	3140	3439	481916200	481915898	1.290000e-64	257.0
20	TraesCS1A01G104200	chr6A	83.117	308	42	7	3140	3439	46548851	46549156	4.600000e-69	272.0
21	TraesCS1A01G104200	chr3A	83.279	305	40	8	3143	3439	597888028	597887727	1.660000e-68	270.0
22	TraesCS1A01G104200	chr6D	84.099	283	40	2	3143	3421	454889234	454889515	5.960000e-68	268.0
23	TraesCS1A01G104200	chr7B	77.151	372	66	13	1522	1880	578403528	578403893	7.930000e-47	198.0
24	TraesCS1A01G104200	chr4B	76.000	175	40	2	1635	1808	483947371	483947544	4.980000e-14	89.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G104200	chr1A	100038055	100041673	3618	False	6684.000000	6684	100.000000	1	3619	1	chr1A.!!$F1	3618
1	TraesCS1A01G104200	chr1A	99999833	100003850	4017	False	856.666667	1544	90.839667	26	2645	3	chr1A.!!$F2	2619
2	TraesCS1A01G104200	chr1D	81480791	81484371	3580	False	5349.000000	5349	93.650000	20	3616	1	chr1D.!!$F1	3596
3	TraesCS1A01G104200	chr1D	81365970	81368593	2623	False	999.333333	1932	89.985333	20	2656	3	chr1D.!!$F2	2636
4	TraesCS1A01G104200	chr1B	136166714	136169743	3029	False	4307.000000	4307	92.555000	19	3014	1	chr1B.!!$F1	2995
5	TraesCS1A01G104200	chr1B	136062816	136065232	2416	False	1496.500000	2198	90.397000	244	2645	2	chr1B.!!$F4	2401
6	TraesCS1A01G104200	chr1B	134722550	134724169	1619	False	813.000000	1430	87.402500	33	1628	2	chr1B.!!$F2	1595
7	TraesCS1A01G104200	chr1B	134731147	134732134	987	False	623.000000	811	88.804000	1641	2656	2	chr1B.!!$F3	1015

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
423	1534	1.196808	CGCGCACCTAAATCTGTGTTT	59.803	47.619	8.75	0.0	34.94	2.83	F
1269	2702	1.637553	AGGCTCCATTTCCATGACTGT	59.362	47.619	0.00	0.0	31.07	3.55	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1491	2941	1.082954	AGCACAGGATACCACCCCT	59.917	57.895	0.0	0.0	37.17	4.79	R
3198	4755	0.937304	GGATGTGCGTGCGTTCATAT	59.063	50.000	0.0	0.0	0.00	1.78	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
124	125	9.508567	GAATAATGAATAAGTTGGTTCTCAAGC	57.491	33.333	4.97	0.00	35.80	4.01
136	137	3.065648	GGTTCTCAAGCGTTAAACACCAA	59.934	43.478	0.00	0.00	0.00	3.67
222	226	6.206829	ACAAGCTCCAAAAGGTCTAAATACAC	59.793	38.462	0.00	0.00	33.60	2.90
292	307	6.040054	ACAGGGTCATTACTAAACAACAAACC	59.960	38.462	0.00	0.00	0.00	3.27
318	333	8.596380	CGAGACACTAAAGGATCAGAAATTAAC	58.404	37.037	0.00	0.00	0.00	2.01
407	1518	3.184986	TCCAAAACTAACTTCTTACGCGC	59.815	43.478	5.73	0.00	0.00	6.86
417	1528	2.953466	TCTTACGCGCACCTAAATCT	57.047	45.000	5.73	0.00	0.00	2.40
423	1534	1.196808	CGCGCACCTAAATCTGTGTTT	59.803	47.619	8.75	0.00	34.94	2.83
435	1546	8.836413	CCTAAATCTGTGTTTGAGTTTTCTACA	58.164	33.333	0.00	0.00	0.00	2.74
474	1585	4.408276	AGTCTATATGGATAGCACCGTGT	58.592	43.478	0.00	0.00	35.84	4.49
641	1806	5.692204	CACGAGAGAGCGATTTTATTACCAT	59.308	40.000	0.00	0.00	34.83	3.55
891	2323	4.451096	TGTTTGTTAACAGGAGAAGATCGC	59.549	41.667	8.56	0.00	39.29	4.58
1017	2450	2.641815	AGGCAGTCCAAGTCTCAAAGAT	59.358	45.455	0.00	0.00	33.74	2.40
1269	2702	1.637553	AGGCTCCATTTCCATGACTGT	59.362	47.619	0.00	0.00	31.07	3.55
1320	2770	8.479280	TCTAAACTTTATGTTGTCGTACGTTTC	58.521	33.333	16.05	7.91	39.13	2.78
1404	2854	4.108299	TTGGATGGCGCCGATGGT	62.108	61.111	23.90	4.72	0.00	3.55
1491	2941	1.296392	CCTCGAGAACATGTGCCCA	59.704	57.895	15.71	0.00	0.00	5.36
1500	2950	2.204228	ATGTGCCCAGGGGTGGTA	60.204	61.111	7.91	0.00	37.65	3.25
1833	3296	6.315393	ACAGTTGTCACAAAACTAACTACCTG	59.685	38.462	0.00	0.00	35.70	4.00
1863	3360	9.841880	GAAAGTTCACAACTAGAATTAAATCCC	57.158	33.333	0.00	0.00	41.91	3.85
1915	3441	4.194640	CAGTGTAGCCATGCTTAACTCAT	58.805	43.478	0.00	0.00	40.44	2.90
1921	3447	4.133078	AGCCATGCTTAACTCATAGAAGC	58.867	43.478	0.00	0.00	44.71	3.86
1940	3472	5.767168	AGAAGCAATCAAGCAACTAGTTCTT	59.233	36.000	4.77	9.45	36.85	2.52
1959	3491	8.329203	AGTTCTTAAACTTCATTCCTCACATC	57.671	34.615	0.00	0.00	43.28	3.06
1964	3496	6.923199	AAACTTCATTCCTCACATCCAAAT	57.077	33.333	0.00	0.00	0.00	2.32
1971	3503	3.073678	TCCTCACATCCAAATTGTCACG	58.926	45.455	0.00	0.00	0.00	4.35
1986	3518	2.223144	TGTCACGAAATTTTCTCAGGCG	59.777	45.455	7.50	0.00	0.00	5.52
2025	3557	5.429762	TGACCTGATCTTATGGAATGGAGTT	59.570	40.000	0.00	0.00	0.00	3.01
2026	3558	6.069440	TGACCTGATCTTATGGAATGGAGTTT	60.069	38.462	0.00	0.00	0.00	2.66
2033	3565	6.346096	TCTTATGGAATGGAGTTTAGAACGG	58.654	40.000	0.00	0.00	36.23	4.44
2037	3569	5.001232	TGGAATGGAGTTTAGAACGGAAAG	58.999	41.667	0.00	0.00	36.23	2.62
2079	3620	5.995282	ACATGACCTAAATTCTGAACGTCAA	59.005	36.000	0.00	0.00	32.96	3.18
2374	3918	4.710167	TCTCCGCCGACGAGGACA	62.710	66.667	7.75	0.00	45.00	4.02
2487	4031	2.438434	AGCATACCGTTGCCAGCC	60.438	61.111	0.00	0.00	43.83	4.85
2822	4377	9.500785	TTCGCATTTCATAATGGTCTGATTATA	57.499	29.630	0.00	0.00	41.21	0.98
2852	4407	1.066645	TGAGTGCGAGCTGATGAACAT	60.067	47.619	0.00	0.00	0.00	2.71
2853	4408	2.005451	GAGTGCGAGCTGATGAACATT	58.995	47.619	0.00	0.00	0.00	2.71
2854	4409	1.736126	AGTGCGAGCTGATGAACATTG	59.264	47.619	0.00	0.00	0.00	2.82
2855	4410	1.733912	GTGCGAGCTGATGAACATTGA	59.266	47.619	0.00	0.00	0.00	2.57
2856	4411	2.160219	GTGCGAGCTGATGAACATTGAA	59.840	45.455	0.00	0.00	0.00	2.69
2857	4412	2.160219	TGCGAGCTGATGAACATTGAAC	59.840	45.455	0.00	0.00	0.00	3.18
2858	4413	2.160219	GCGAGCTGATGAACATTGAACA	59.840	45.455	0.00	0.00	0.00	3.18
3069	4624	6.419710	CCATACACATGTGATGAAAATGATGC	59.580	38.462	31.94	0.00	0.00	3.91
3078	4633	6.380560	TGTGATGAAAATGATGCCAGGAATAA	59.619	34.615	0.00	0.00	0.00	1.40
3170	4727	0.038618	ACACGATACAGACGCAAGCA	60.039	50.000	0.00	0.00	45.62	3.91
3185	4742	2.222596	GCAAGCACTCATATATACGCGC	60.223	50.000	5.73	0.00	0.00	6.86
3191	4748	4.153256	CACTCATATATACGCGCGTACAA	58.847	43.478	41.36	31.80	33.01	2.41
3198	4755	0.100861	TACGCGCGTACAATCATCCA	59.899	50.000	36.55	14.78	0.00	3.41
3205	4762	4.666655	GCGCGTACAATCATCCATATGAAC	60.667	45.833	8.43	0.00	45.12	3.18
3207	4764	4.946255	CGTACAATCATCCATATGAACGC	58.054	43.478	3.65	0.00	45.12	4.84
3222	4783	2.167398	AACGCACGCACATCCTACCT	62.167	55.000	0.00	0.00	0.00	3.08
3246	4807	2.583143	TGAACACCTTCGAGAGACTGA	58.417	47.619	0.00	0.00	41.84	3.41
3272	4833	7.819900	AGCCGGTATATCATCTTGAGATTTTAC	59.180	37.037	1.90	0.00	30.15	2.01
3299	4860	0.109873	CCGTAGGCGCCTTATAGTCG	60.110	60.000	37.74	25.59	46.14	4.18
3316	4877	3.426615	AGTCGACAGGAACATCTTCTCT	58.573	45.455	19.50	0.00	0.00	3.10
3373	4934	2.887337	TCAGAATAAACGCGAGCATCA	58.113	42.857	15.93	0.00	33.17	3.07
3418	4979	4.933505	GGATACCACTGTCCTACTAACC	57.066	50.000	0.00	0.00	0.00	2.85
3421	4982	5.365895	GGATACCACTGTCCTACTAACCATT	59.634	44.000	0.00	0.00	0.00	3.16
3425	4986	5.250774	ACCACTGTCCTACTAACCATTCAAT	59.749	40.000	0.00	0.00	0.00	2.57
3426	4987	6.180472	CCACTGTCCTACTAACCATTCAATT	58.820	40.000	0.00	0.00	0.00	2.32
3427	4988	7.037873	ACCACTGTCCTACTAACCATTCAATTA	60.038	37.037	0.00	0.00	0.00	1.40
3428	4989	7.280205	CCACTGTCCTACTAACCATTCAATTAC	59.720	40.741	0.00	0.00	0.00	1.89
3429	4990	7.822334	CACTGTCCTACTAACCATTCAATTACA	59.178	37.037	0.00	0.00	0.00	2.41
3430	4991	8.041323	ACTGTCCTACTAACCATTCAATTACAG	58.959	37.037	0.00	0.00	35.43	2.74
3431	4992	8.141298	TGTCCTACTAACCATTCAATTACAGA	57.859	34.615	0.00	0.00	0.00	3.41
3432	4993	8.768397	TGTCCTACTAACCATTCAATTACAGAT	58.232	33.333	0.00	0.00	0.00	2.90
3433	4994	9.614792	GTCCTACTAACCATTCAATTACAGATT	57.385	33.333	0.00	0.00	0.00	2.40
3616	5177	2.739379	GACAAAAGCTGAGCTGGAGTAC	59.261	50.000	8.16	0.00	39.62	2.73
3617	5178	2.104792	ACAAAAGCTGAGCTGGAGTACA	59.895	45.455	8.16	0.00	39.62	2.90

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
16	17	0.108329	ACTTGGTTGCGACTATCCCG	60.108	55.000	3.59	0.00	0.00	5.14
17	18	2.973694	TACTTGGTTGCGACTATCCC	57.026	50.000	3.59	0.00	0.00	3.85
124	125	6.050454	TCTGTATGTTGTTGGTGTTTAACG	57.950	37.500	0.00	0.00	0.00	3.18
136	137	3.941483	GCCTGCAAGTATCTGTATGTTGT	59.059	43.478	0.00	0.00	0.00	3.32
292	307	8.596380	GTTAATTTCTGATCCTTTAGTGTCTCG	58.404	37.037	0.00	0.00	0.00	4.04
407	1518	7.707104	AGAAAACTCAAACACAGATTTAGGTG	58.293	34.615	0.00	0.00	40.78	4.00
417	1528	9.391006	AGATTTACTGTAGAAAACTCAAACACA	57.609	29.630	0.00	0.00	0.00	3.72
474	1585	5.906113	TGGTGCTTCAAGTCAAACTTAAA	57.094	34.783	0.00	0.00	36.03	1.52
641	1806	0.388294	CTCGATGATGCAGAGCCTGA	59.612	55.000	6.40	0.00	32.44	3.86
686	2117	2.917701	TTGCATGCAGTTTCGTATGG	57.082	45.000	21.50	0.00	30.48	2.74
689	2120	5.559427	AATGTATTGCATGCAGTTTCGTA	57.441	34.783	21.52	4.56	37.96	3.43
1017	2450	6.709281	ACAGTCTCACTTACTAGCTACACTA	58.291	40.000	0.00	0.00	0.00	2.74
1248	2681	2.295885	CAGTCATGGAAATGGAGCCTC	58.704	52.381	0.00	0.00	0.00	4.70
1269	2702	7.639113	AGAAAGTTGAGGTACATTGACAAAA	57.361	32.000	0.00	0.00	0.00	2.44
1404	2854	3.572255	GGTTGGGTAGTGCAAATTTCTCA	59.428	43.478	0.00	0.00	0.00	3.27
1491	2941	1.082954	AGCACAGGATACCACCCCT	59.917	57.895	0.00	0.00	37.17	4.79
1500	2950	1.830279	CCACAATGTCAGCACAGGAT	58.170	50.000	0.00	0.00	35.41	3.24
1623	3075	4.823989	CCTCCACTCTGAAAACAATCAGTT	59.176	41.667	4.41	0.00	45.65	3.16
1798	3250	4.209307	TGTGACAACTGTTACCTGACAA	57.791	40.909	2.68	0.00	34.10	3.18
1833	3296	4.789095	TTCTAGTTGTGAACTTTCGTGC	57.211	40.909	0.00	0.00	42.81	5.34
1863	3360	3.270027	TCATTTTCAGGGATGTAGCACG	58.730	45.455	0.00	0.00	0.00	5.34
1915	3441	6.467677	AGAACTAGTTGCTTGATTGCTTCTA	58.532	36.000	14.14	0.00	0.00	2.10
1921	3447	9.387123	GAAGTTTAAGAACTAGTTGCTTGATTG	57.613	33.333	14.14	0.00	45.18	2.67
1922	3448	9.120538	TGAAGTTTAAGAACTAGTTGCTTGATT	57.879	29.630	14.14	9.47	45.18	2.57
1923	3449	8.677148	TGAAGTTTAAGAACTAGTTGCTTGAT	57.323	30.769	14.14	0.00	45.18	2.57
1924	3450	8.677148	ATGAAGTTTAAGAACTAGTTGCTTGA	57.323	30.769	14.14	9.92	45.18	3.02
1925	3451	9.387123	GAATGAAGTTTAAGAACTAGTTGCTTG	57.613	33.333	14.14	0.00	45.18	4.01
1940	3472	8.306038	CAATTTGGATGTGAGGAATGAAGTTTA	58.694	33.333	0.00	0.00	0.00	2.01
1959	3491	6.144402	CCTGAGAAAATTTCGTGACAATTTGG	59.856	38.462	0.78	0.00	34.68	3.28
1964	3496	3.303725	CGCCTGAGAAAATTTCGTGACAA	60.304	43.478	0.00	0.00	34.02	3.18
1971	3503	9.387123	GTATGATAATTCGCCTGAGAAAATTTC	57.613	33.333	0.00	0.00	33.43	2.17
1986	3518	9.553064	AAGATCAGGTCAAGTGTATGATAATTC	57.447	33.333	0.00	0.00	30.98	2.17
2025	3557	6.460781	TGACAAATAGAGCTTTCCGTTCTAA	58.539	36.000	0.00	0.00	38.66	2.10
2026	3558	6.032956	TGACAAATAGAGCTTTCCGTTCTA	57.967	37.500	0.00	0.00	39.36	2.10
2033	3565	6.959361	TGTGTTCTTGACAAATAGAGCTTTC	58.041	36.000	0.00	0.00	40.65	2.62
2037	3569	6.310197	GTCATGTGTTCTTGACAAATAGAGC	58.690	40.000	8.61	0.00	43.60	4.09
2087	3628	8.385111	TCGGTTTTCACGTTCAGAATTATTATC	58.615	33.333	0.00	0.00	0.00	1.75
2374	3918	3.529341	TTGTGGTGCTGGCGACGAT	62.529	57.895	0.00	0.00	0.00	3.73
2791	4346	5.882557	AGACCATTATGAAATGCGAAGAGTT	59.117	36.000	0.00	0.00	41.06	3.01
2793	4348	5.525012	TCAGACCATTATGAAATGCGAAGAG	59.475	40.000	0.00	0.00	41.06	2.85
2822	4377	1.537202	GCTCGCACTCAAACAAGGATT	59.463	47.619	0.00	0.00	0.00	3.01
2828	4383	1.150827	CATCAGCTCGCACTCAAACA	58.849	50.000	0.00	0.00	0.00	2.83
2852	4407	4.082081	GCCATCAGTCCATTGATTGTTCAA	60.082	41.667	0.00	0.00	45.57	2.69
2853	4408	3.444742	GCCATCAGTCCATTGATTGTTCA	59.555	43.478	0.00	0.00	35.67	3.18
2854	4409	3.181483	GGCCATCAGTCCATTGATTGTTC	60.181	47.826	0.00	0.00	35.67	3.18
2855	4410	2.762327	GGCCATCAGTCCATTGATTGTT	59.238	45.455	0.00	0.00	35.67	2.83
2856	4411	2.291735	TGGCCATCAGTCCATTGATTGT	60.292	45.455	0.00	0.00	35.67	2.71
2857	4412	2.100252	GTGGCCATCAGTCCATTGATTG	59.900	50.000	9.72	0.00	35.67	2.67
2858	4413	2.381911	GTGGCCATCAGTCCATTGATT	58.618	47.619	9.72	0.00	35.67	2.57
3155	4712	1.996292	TGAGTGCTTGCGTCTGTATC	58.004	50.000	0.00	0.00	0.00	2.24
3156	4713	2.680312	ATGAGTGCTTGCGTCTGTAT	57.320	45.000	0.00	0.00	0.00	2.29
3170	4727	4.408993	TTGTACGCGCGTATATATGAGT	57.591	40.909	40.91	16.38	32.82	3.41
3185	4742	4.447389	TGCGTTCATATGGATGATTGTACG	59.553	41.667	7.45	5.82	41.77	3.67
3191	4748	1.800586	GCGTGCGTTCATATGGATGAT	59.199	47.619	7.45	0.00	41.77	2.45
3198	4755	0.937304	GGATGTGCGTGCGTTCATAT	59.063	50.000	0.00	0.00	0.00	1.78
3205	4762	1.878522	GAGGTAGGATGTGCGTGCG	60.879	63.158	0.00	0.00	0.00	5.34
3207	4764	2.623416	TCATAGAGGTAGGATGTGCGTG	59.377	50.000	0.00	0.00	0.00	5.34
3222	4783	4.396478	CAGTCTCTCGAAGGTGTTCATAGA	59.604	45.833	0.00	0.00	32.36	1.98
3246	4807	6.365970	AAATCTCAAGATGATATACCGGCT	57.634	37.500	0.00	0.00	34.49	5.52
3272	4833	2.879462	GCGCCTACGGTGACTTCG	60.879	66.667	0.00	0.00	40.57	3.79
3292	4853	6.358178	AGAGAAGATGTTCCTGTCGACTATA	58.642	40.000	17.92	0.00	32.48	1.31
3299	4860	4.219507	TCAGTGAGAGAAGATGTTCCTGTC	59.780	45.833	0.00	0.00	32.48	3.51
3316	4877	3.478394	GCGATGCGCGTTCAGTGA	61.478	61.111	8.43	0.00	44.55	3.41
3373	4934	3.163467	AGCTCACTACGGTTTAAGTCCT	58.837	45.455	0.00	0.00	0.00	3.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.