Multiple sequence alignment - TraesCS1A01G103800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G103800 chr1A 100.000 3113 0 0 1 3113 99750813 99747701 0.000000e+00 5749.0
1 TraesCS1A01G103800 chr1A 80.078 1546 235 43 743 2232 99640887 99642415 0.000000e+00 1081.0
2 TraesCS1A01G103800 chr5D 95.217 1547 52 9 794 2325 11614424 11612885 0.000000e+00 2427.0
3 TraesCS1A01G103800 chr5D 86.781 1513 149 26 833 2303 11364694 11366197 0.000000e+00 1639.0
4 TraesCS1A01G103800 chr5D 76.583 1042 171 38 743 1750 11420716 11421718 3.580000e-139 505.0
5 TraesCS1A01G103800 chr5D 86.498 474 45 15 2325 2783 11612828 11612359 1.290000e-138 503.0
6 TraesCS1A01G103800 chr5D 74.588 1153 223 49 1003 2111 12168274 12167148 2.850000e-120 442.0
7 TraesCS1A01G103800 chr5D 81.679 393 55 7 1 392 11617187 11616811 8.380000e-81 311.0
8 TraesCS1A01G103800 chr5D 95.238 168 5 3 708 873 11615611 11615445 2.380000e-66 263.0
9 TraesCS1A01G103800 chr5D 85.938 256 17 13 749 989 11617557 11617306 3.980000e-64 255.0
10 TraesCS1A01G103800 chr5D 90.000 100 9 1 2325 2423 11376598 11376697 9.060000e-26 128.0
11 TraesCS1A01G103800 chr5D 95.522 67 1 2 708 773 11614484 11614419 4.250000e-19 106.0
12 TraesCS1A01G103800 chr5D 95.652 46 2 0 663 708 11362497 11362542 1.200000e-09 75.0
13 TraesCS1A01G103800 chr5D 97.674 43 1 0 666 708 11627527 11627485 1.200000e-09 75.0
14 TraesCS1A01G103800 chr5B 94.099 1542 87 2 788 2325 11477226 11478767 0.000000e+00 2340.0
15 TraesCS1A01G103800 chr5B 79.902 1423 208 39 887 2239 11605569 11604155 0.000000e+00 972.0
16 TraesCS1A01G103800 chr5B 78.303 1355 217 40 803 2115 11503073 11504392 0.000000e+00 802.0
17 TraesCS1A01G103800 chr5B 88.537 410 38 4 2332 2735 11478837 11479243 3.610000e-134 488.0
18 TraesCS1A01G103800 chr5B 82.456 342 46 9 2456 2783 11479801 11480142 1.410000e-73 287.0
19 TraesCS1A01G103800 chr5B 77.407 540 82 17 1716 2233 564211358 564211879 5.080000e-73 285.0
20 TraesCS1A01G103800 chr5B 87.919 149 17 1 2492 2639 696095791 696095643 1.150000e-39 174.0
21 TraesCS1A01G103800 chr5B 83.766 154 16 5 2492 2640 696097518 696097369 1.510000e-28 137.0
22 TraesCS1A01G103800 chr5B 89.796 98 10 0 742 839 11476965 11477062 3.260000e-25 126.0
23 TraesCS1A01G103800 chr5B 95.652 46 2 0 663 708 11475436 11475481 1.200000e-09 75.0
24 TraesCS1A01G103800 chrUn 85.595 1673 158 34 822 2423 312563008 312564668 0.000000e+00 1677.0
25 TraesCS1A01G103800 chrUn 97.239 326 9 0 2788 3113 268037879 268038204 1.260000e-153 553.0
26 TraesCS1A01G103800 chrUn 96.610 59 1 1 764 821 374948564 374948622 2.560000e-16 97.1
27 TraesCS1A01G103800 chrUn 96.610 59 1 1 764 821 461628264 461628322 2.560000e-16 97.1
28 TraesCS1A01G103800 chrUn 97.674 43 1 0 666 708 294862779 294862737 1.200000e-09 75.0
29 TraesCS1A01G103800 chrUn 97.674 43 1 0 666 708 296675307 296675265 1.200000e-09 75.0
30 TraesCS1A01G103800 chrUn 97.674 43 1 0 666 708 309288860 309288818 1.200000e-09 75.0
31 TraesCS1A01G103800 chr5A 74.671 1141 218 47 1014 2111 9510328 9509216 1.020000e-119 440.0
32 TraesCS1A01G103800 chr7B 91.200 125 11 0 443 567 531999334 531999210 1.480000e-38 171.0
33 TraesCS1A01G103800 chr2B 83.019 159 18 6 2459 2609 870003 869846 5.420000e-28 135.0
34 TraesCS1A01G103800 chr2B 81.690 71 13 0 1704 1774 90062366 90062436 3.350000e-05 60.2
35 TraesCS1A01G103800 chr7D 79.888 179 19 10 2509 2676 237392866 237393038 7.050000e-22 115.0
36 TraesCS1A01G103800 chr7D 94.118 34 2 0 2784 2817 454142007 454142040 6.000000e-03 52.8
37 TraesCS1A01G103800 chr3B 78.495 186 24 12 2504 2678 824953072 824952892 1.180000e-19 108.0
38 TraesCS1A01G103800 chr3B 78.495 186 24 12 2504 2678 825149333 825149153 1.180000e-19 108.0
39 TraesCS1A01G103800 chr2A 83.099 71 12 0 1704 1774 58198826 58198896 7.210000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G103800 chr1A 99747701 99750813 3112 True 5749.000000 5749 100.000000 1 3113 1 chr1A.!!$R1 3112
1 TraesCS1A01G103800 chr1A 99640887 99642415 1528 False 1081.000000 1081 80.078000 743 2232 1 chr1A.!!$F1 1489
2 TraesCS1A01G103800 chr5D 11362497 11366197 3700 False 857.000000 1639 91.216500 663 2303 2 chr5D.!!$F3 1640
3 TraesCS1A01G103800 chr5D 11612359 11617557 5198 True 644.166667 2427 90.015333 1 2783 6 chr5D.!!$R3 2782
4 TraesCS1A01G103800 chr5D 11420716 11421718 1002 False 505.000000 505 76.583000 743 1750 1 chr5D.!!$F2 1007
5 TraesCS1A01G103800 chr5D 12167148 12168274 1126 True 442.000000 442 74.588000 1003 2111 1 chr5D.!!$R2 1108
6 TraesCS1A01G103800 chr5B 11604155 11605569 1414 True 972.000000 972 79.902000 887 2239 1 chr5B.!!$R1 1352
7 TraesCS1A01G103800 chr5B 11503073 11504392 1319 False 802.000000 802 78.303000 803 2115 1 chr5B.!!$F1 1312
8 TraesCS1A01G103800 chr5B 11475436 11480142 4706 False 663.200000 2340 90.108000 663 2783 5 chr5B.!!$F3 2120
9 TraesCS1A01G103800 chr5B 564211358 564211879 521 False 285.000000 285 77.407000 1716 2233 1 chr5B.!!$F2 517
10 TraesCS1A01G103800 chrUn 312563008 312564668 1660 False 1677.000000 1677 85.595000 822 2423 1 chrUn.!!$F2 1601
11 TraesCS1A01G103800 chr5A 9509216 9510328 1112 True 440.000000 440 74.671000 1014 2111 1 chr5A.!!$R1 1097

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 866 0.032130 CGGATGGAGTCATACCACCG 59.968 60.0 0.0 0.0 41.46 4.94 F
550 941 0.107654 AACTCTGGTCTAATGGCCGC 60.108 55.0 0.0 0.0 0.00 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1984 6045 0.824759 GGATACTCGTTCTGCTGGGT 59.175 55.0 0.00 0.0 0.0 4.51 R
2507 7556 0.603569 GGTTCGAGCCAGTGAGAGAA 59.396 55.0 14.14 0.0 0.0 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 399 8.700973 GGGCTTCCAATTTCTTTATAATTACCA 58.299 33.333 0.00 0.00 0.00 3.25
44 415 4.475051 TTACCACACATTATGTAGCGGT 57.525 40.909 14.19 14.19 40.64 5.68
66 438 8.026607 GCGGTGCCAATTAATTTATGTATGTAT 58.973 33.333 0.00 0.00 0.00 2.29
67 439 9.340695 CGGTGCCAATTAATTTATGTATGTATG 57.659 33.333 0.00 0.00 0.00 2.39
68 440 9.139174 GGTGCCAATTAATTTATGTATGTATGC 57.861 33.333 0.00 0.00 0.00 3.14
69 441 9.689976 GTGCCAATTAATTTATGTATGTATGCA 57.310 29.630 0.00 0.00 0.00 3.96
109 481 1.158466 TCAAGAGGGAGGAGGCACA 59.842 57.895 0.00 0.00 0.00 4.57
110 482 1.194781 TCAAGAGGGAGGAGGCACAC 61.195 60.000 0.00 0.00 0.00 3.82
136 508 3.124066 ACTCTTATCTTTTCCCCTCCCC 58.876 50.000 0.00 0.00 0.00 4.81
137 509 2.443632 CTCTTATCTTTTCCCCTCCCCC 59.556 54.545 0.00 0.00 0.00 5.40
138 510 2.214201 CTTATCTTTTCCCCTCCCCCA 58.786 52.381 0.00 0.00 0.00 4.96
139 511 1.603634 TATCTTTTCCCCTCCCCCAC 58.396 55.000 0.00 0.00 0.00 4.61
140 512 0.479589 ATCTTTTCCCCTCCCCCACA 60.480 55.000 0.00 0.00 0.00 4.17
141 513 1.076727 CTTTTCCCCTCCCCCACAC 59.923 63.158 0.00 0.00 0.00 3.82
142 514 2.441035 CTTTTCCCCTCCCCCACACC 62.441 65.000 0.00 0.00 0.00 4.16
186 558 2.987125 GGAGGCGAAACCCTAGCA 59.013 61.111 0.00 0.00 40.58 3.49
188 560 1.449778 GAGGCGAAACCCTAGCACC 60.450 63.158 0.00 0.00 40.58 5.01
189 561 2.437895 GGCGAAACCCTAGCACCC 60.438 66.667 0.00 0.00 0.00 4.61
192 564 1.153628 CGAAACCCTAGCACCCGAG 60.154 63.158 0.00 0.00 0.00 4.63
194 566 2.180159 GAAACCCTAGCACCCGAGCA 62.180 60.000 0.00 0.00 36.85 4.26
197 569 2.136878 CCCTAGCACCCGAGCATCT 61.137 63.158 0.00 0.00 36.85 2.90
213 585 1.406065 ATCTCTCACTCCATGCCCCG 61.406 60.000 0.00 0.00 0.00 5.73
305 677 3.966543 CCCTGACGGGCCACCTTT 61.967 66.667 4.39 0.00 45.33 3.11
306 678 2.598787 CCCTGACGGGCCACCTTTA 61.599 63.158 4.39 0.00 45.33 1.85
308 680 1.373435 CTGACGGGCCACCTTTACA 59.627 57.895 4.39 0.00 33.28 2.41
309 681 0.035439 CTGACGGGCCACCTTTACAT 60.035 55.000 4.39 0.00 33.28 2.29
311 683 0.035820 GACGGGCCACCTTTACATGA 60.036 55.000 4.39 0.00 33.28 3.07
358 730 4.704833 GCAGGCAGCTTCCGGTGA 62.705 66.667 0.00 0.00 41.05 4.02
360 732 3.710722 AGGCAGCTTCCGGTGAGG 61.711 66.667 0.00 0.00 41.05 3.86
361 733 4.021925 GGCAGCTTCCGGTGAGGT 62.022 66.667 0.00 3.70 41.05 3.85
363 735 2.743718 CAGCTTCCGGTGAGGTGT 59.256 61.111 22.79 0.00 41.05 4.16
364 736 1.374758 CAGCTTCCGGTGAGGTGTC 60.375 63.158 22.79 4.14 41.05 3.67
365 737 1.837051 AGCTTCCGGTGAGGTGTCA 60.837 57.895 0.00 0.00 41.99 3.58
379 770 4.138722 GTCACACGACAGAGAGCG 57.861 61.111 0.00 0.00 42.13 5.03
395 786 2.436646 CGCGGTGGAGAGGCAAAT 60.437 61.111 0.00 0.00 0.00 2.32
396 787 2.464459 CGCGGTGGAGAGGCAAATC 61.464 63.158 0.00 0.00 0.00 2.17
397 788 1.377202 GCGGTGGAGAGGCAAATCA 60.377 57.895 0.00 0.00 0.00 2.57
405 796 2.361610 AGGCAAATCAGGGCGGTG 60.362 61.111 0.00 0.00 35.71 4.94
415 806 0.537371 CAGGGCGGTGGTTTTCTTCT 60.537 55.000 0.00 0.00 0.00 2.85
416 807 0.185175 AGGGCGGTGGTTTTCTTCTT 59.815 50.000 0.00 0.00 0.00 2.52
417 808 0.596577 GGGCGGTGGTTTTCTTCTTC 59.403 55.000 0.00 0.00 0.00 2.87
419 810 1.314730 GCGGTGGTTTTCTTCTTCCA 58.685 50.000 0.00 0.00 0.00 3.53
420 811 1.679153 GCGGTGGTTTTCTTCTTCCAA 59.321 47.619 0.00 0.00 0.00 3.53
421 812 2.100087 GCGGTGGTTTTCTTCTTCCAAA 59.900 45.455 0.00 0.00 0.00 3.28
422 813 3.429684 GCGGTGGTTTTCTTCTTCCAAAA 60.430 43.478 0.00 0.00 0.00 2.44
423 814 4.739436 GCGGTGGTTTTCTTCTTCCAAAAT 60.739 41.667 0.00 0.00 0.00 1.82
424 815 5.508320 GCGGTGGTTTTCTTCTTCCAAAATA 60.508 40.000 0.00 0.00 0.00 1.40
425 816 6.508777 CGGTGGTTTTCTTCTTCCAAAATAA 58.491 36.000 0.00 0.00 0.00 1.40
426 817 6.981559 CGGTGGTTTTCTTCTTCCAAAATAAA 59.018 34.615 0.00 0.00 0.00 1.40
427 818 7.655732 CGGTGGTTTTCTTCTTCCAAAATAAAT 59.344 33.333 0.00 0.00 0.00 1.40
429 820 8.282592 GTGGTTTTCTTCTTCCAAAATAAATGC 58.717 33.333 0.00 0.00 0.00 3.56
430 821 8.210265 TGGTTTTCTTCTTCCAAAATAAATGCT 58.790 29.630 0.00 0.00 0.00 3.79
431 822 9.056005 GGTTTTCTTCTTCCAAAATAAATGCTT 57.944 29.630 0.00 0.00 0.00 3.91
432 823 9.868389 GTTTTCTTCTTCCAAAATAAATGCTTG 57.132 29.630 0.00 0.00 0.00 4.01
433 824 7.656707 TTCTTCTTCCAAAATAAATGCTTGC 57.343 32.000 0.00 0.00 0.00 4.01
434 825 6.996509 TCTTCTTCCAAAATAAATGCTTGCT 58.003 32.000 0.00 0.00 0.00 3.91
436 827 4.931002 TCTTCCAAAATAAATGCTTGCTGC 59.069 37.500 0.00 0.00 43.25 5.25
438 829 2.222863 CCAAAATAAATGCTTGCTGCGC 60.223 45.455 0.00 0.00 46.63 6.09
439 830 2.367030 AAATAAATGCTTGCTGCGCA 57.633 40.000 10.98 10.98 46.63 6.09
442 833 0.810016 TAAATGCTTGCTGCGCATGA 59.190 45.000 12.24 0.00 46.62 3.07
443 834 0.038067 AAATGCTTGCTGCGCATGAA 60.038 45.000 12.24 5.73 46.62 2.57
444 835 0.038067 AATGCTTGCTGCGCATGAAA 60.038 45.000 12.24 5.25 46.62 2.69
445 836 0.174845 ATGCTTGCTGCGCATGAAAT 59.825 45.000 12.24 0.00 45.66 2.17
458 849 2.978013 CATGAAATGCTCGATCAACGG 58.022 47.619 0.00 0.00 37.62 4.44
459 850 2.378445 TGAAATGCTCGATCAACGGA 57.622 45.000 0.00 0.00 42.82 4.69
460 851 2.905075 TGAAATGCTCGATCAACGGAT 58.095 42.857 0.00 0.00 42.82 4.18
461 852 2.609002 TGAAATGCTCGATCAACGGATG 59.391 45.455 0.00 0.00 42.82 3.51
462 853 1.586422 AATGCTCGATCAACGGATGG 58.414 50.000 0.00 0.00 42.82 3.51
463 854 0.752658 ATGCTCGATCAACGGATGGA 59.247 50.000 0.00 0.00 42.82 3.41
469 860 3.219281 TCGATCAACGGATGGAGTCATA 58.781 45.455 0.00 0.00 42.82 2.15
470 861 3.004419 TCGATCAACGGATGGAGTCATAC 59.996 47.826 0.00 0.00 42.82 2.39
475 866 0.032130 CGGATGGAGTCATACCACCG 59.968 60.000 0.00 0.00 41.46 4.94
476 867 0.249911 GGATGGAGTCATACCACCGC 60.250 60.000 0.00 0.00 40.36 5.68
477 868 0.249911 GATGGAGTCATACCACCGCC 60.250 60.000 0.00 0.00 40.36 6.13
478 869 0.691078 ATGGAGTCATACCACCGCCT 60.691 55.000 0.00 0.00 40.36 5.52
479 870 1.327690 TGGAGTCATACCACCGCCTC 61.328 60.000 0.00 0.00 32.03 4.70
480 871 1.442148 GAGTCATACCACCGCCTCC 59.558 63.158 0.00 0.00 0.00 4.30
481 872 1.001760 AGTCATACCACCGCCTCCT 59.998 57.895 0.00 0.00 0.00 3.69
482 873 1.043673 AGTCATACCACCGCCTCCTC 61.044 60.000 0.00 0.00 0.00 3.71
483 874 1.760875 TCATACCACCGCCTCCTCC 60.761 63.158 0.00 0.00 0.00 4.30
484 875 2.838225 ATACCACCGCCTCCTCCG 60.838 66.667 0.00 0.00 0.00 4.63
505 896 2.509870 GCAAACGAGCAAGTTCTATGC 58.490 47.619 0.00 4.51 44.15 3.14
516 907 6.917217 GCAAGTTCTATGCTTTACTGATCT 57.083 37.500 0.00 0.00 40.64 2.75
517 908 7.313951 GCAAGTTCTATGCTTTACTGATCTT 57.686 36.000 0.00 0.00 40.64 2.40
518 909 7.405769 GCAAGTTCTATGCTTTACTGATCTTC 58.594 38.462 0.00 0.00 40.64 2.87
520 911 8.816144 CAAGTTCTATGCTTTACTGATCTTCTC 58.184 37.037 0.00 0.00 0.00 2.87
527 918 2.437085 TACTGATCTTCTCCGGCTCA 57.563 50.000 0.00 0.00 0.00 4.26
528 919 0.820871 ACTGATCTTCTCCGGCTCAC 59.179 55.000 0.00 0.00 0.00 3.51
539 930 2.932234 CGGCTCACGGAACTCTGGT 61.932 63.158 0.00 0.00 39.42 4.00
540 931 1.079750 GGCTCACGGAACTCTGGTC 60.080 63.158 0.00 0.00 0.00 4.02
541 932 1.536943 GGCTCACGGAACTCTGGTCT 61.537 60.000 0.00 0.00 0.00 3.85
542 933 1.174783 GCTCACGGAACTCTGGTCTA 58.825 55.000 0.00 0.00 0.00 2.59
543 934 1.544691 GCTCACGGAACTCTGGTCTAA 59.455 52.381 0.00 0.00 0.00 2.10
544 935 2.166664 GCTCACGGAACTCTGGTCTAAT 59.833 50.000 0.00 0.00 0.00 1.73
546 937 2.496070 TCACGGAACTCTGGTCTAATGG 59.504 50.000 0.00 0.00 0.00 3.16
547 938 1.207329 ACGGAACTCTGGTCTAATGGC 59.793 52.381 0.00 0.00 0.00 4.40
550 941 0.107654 AACTCTGGTCTAATGGCCGC 60.108 55.000 0.00 0.00 0.00 6.53
551 942 1.227674 CTCTGGTCTAATGGCCGCC 60.228 63.158 1.04 1.04 0.00 6.13
552 943 1.689233 TCTGGTCTAATGGCCGCCT 60.689 57.895 11.61 0.00 0.00 5.52
553 944 1.224592 CTGGTCTAATGGCCGCCTT 59.775 57.895 11.61 0.47 0.00 4.35
554 945 0.394352 CTGGTCTAATGGCCGCCTTT 60.394 55.000 11.61 13.25 0.00 3.11
555 946 0.913205 TGGTCTAATGGCCGCCTTTA 59.087 50.000 11.61 13.70 0.00 1.85
557 948 1.140252 GGTCTAATGGCCGCCTTTAGA 59.860 52.381 30.40 30.40 43.37 2.10
558 949 2.420967 GGTCTAATGGCCGCCTTTAGAA 60.421 50.000 33.40 21.70 45.40 2.10
559 950 3.275999 GTCTAATGGCCGCCTTTAGAAA 58.724 45.455 33.40 19.50 45.40 2.52
560 951 3.312697 GTCTAATGGCCGCCTTTAGAAAG 59.687 47.826 33.40 18.79 45.40 2.62
571 962 2.622436 CTTTAGAAAGGACCTGGCTCG 58.378 52.381 0.00 0.00 32.40 5.03
572 963 1.933021 TTAGAAAGGACCTGGCTCGA 58.067 50.000 0.00 0.00 0.00 4.04
573 964 1.475403 TAGAAAGGACCTGGCTCGAG 58.525 55.000 8.45 8.45 0.00 4.04
574 965 1.448717 GAAAGGACCTGGCTCGAGC 60.449 63.158 29.38 29.38 41.14 5.03
584 975 2.279252 GCTCGAGCGCGGGAAATA 60.279 61.111 23.61 0.00 41.67 1.40
585 976 1.881252 GCTCGAGCGCGGGAAATAA 60.881 57.895 23.61 0.00 41.67 1.40
586 977 1.925052 CTCGAGCGCGGGAAATAAC 59.075 57.895 2.50 0.00 41.67 1.89
598 1197 3.414269 GGGAAATAACCGACTTGTTCCA 58.586 45.455 0.00 0.00 0.00 3.53
599 1198 4.014406 GGGAAATAACCGACTTGTTCCAT 58.986 43.478 0.00 0.00 0.00 3.41
605 1204 1.971357 ACCGACTTGTTCCATGAGAGT 59.029 47.619 0.00 0.00 0.00 3.24
609 1208 3.185188 CGACTTGTTCCATGAGAGTTGTG 59.815 47.826 0.00 0.00 0.00 3.33
613 1212 3.213506 TGTTCCATGAGAGTTGTGTTGG 58.786 45.455 0.00 0.00 0.00 3.77
614 1213 2.554032 GTTCCATGAGAGTTGTGTTGGG 59.446 50.000 0.00 0.00 0.00 4.12
616 1215 1.546323 CCATGAGAGTTGTGTTGGGCT 60.546 52.381 0.00 0.00 0.00 5.19
617 1216 2.233271 CATGAGAGTTGTGTTGGGCTT 58.767 47.619 0.00 0.00 0.00 4.35
618 1217 2.435372 TGAGAGTTGTGTTGGGCTTT 57.565 45.000 0.00 0.00 0.00 3.51
621 1220 1.134220 AGAGTTGTGTTGGGCTTTCGA 60.134 47.619 0.00 0.00 0.00 3.71
626 1225 1.148273 TGTTGGGCTTTCGAGTGCT 59.852 52.632 10.69 0.00 0.00 4.40
627 1226 0.465460 TGTTGGGCTTTCGAGTGCTT 60.465 50.000 10.69 0.00 0.00 3.91
628 1227 0.668535 GTTGGGCTTTCGAGTGCTTT 59.331 50.000 10.69 0.00 0.00 3.51
629 1228 1.877443 GTTGGGCTTTCGAGTGCTTTA 59.123 47.619 10.69 0.00 0.00 1.85
630 1229 2.488153 GTTGGGCTTTCGAGTGCTTTAT 59.512 45.455 10.69 0.00 0.00 1.40
631 1230 3.620427 TGGGCTTTCGAGTGCTTTATA 57.380 42.857 10.69 0.00 0.00 0.98
633 1232 4.523083 TGGGCTTTCGAGTGCTTTATAAT 58.477 39.130 10.69 0.00 0.00 1.28
634 1233 4.947388 TGGGCTTTCGAGTGCTTTATAATT 59.053 37.500 10.69 0.00 0.00 1.40
635 1234 5.163663 TGGGCTTTCGAGTGCTTTATAATTG 60.164 40.000 10.69 0.00 0.00 2.32
636 1235 4.735338 GGCTTTCGAGTGCTTTATAATTGC 59.265 41.667 10.69 4.58 0.00 3.56
637 1236 4.735338 GCTTTCGAGTGCTTTATAATTGCC 59.265 41.667 8.03 1.95 0.00 4.52
639 1238 2.286833 TCGAGTGCTTTATAATTGCCGC 59.713 45.455 8.03 0.00 0.00 6.53
641 1240 1.120437 GTGCTTTATAATTGCCGCGC 58.880 50.000 0.00 0.00 0.00 6.86
642 1241 0.735471 TGCTTTATAATTGCCGCGCA 59.265 45.000 8.75 0.00 36.47 6.09
644 1243 2.223688 TGCTTTATAATTGCCGCGCATT 60.224 40.909 8.75 1.49 38.76 3.56
645 1244 3.003793 TGCTTTATAATTGCCGCGCATTA 59.996 39.130 8.75 4.11 38.76 1.90
646 1245 4.165779 GCTTTATAATTGCCGCGCATTAT 58.834 39.130 8.75 11.72 38.76 1.28
649 1248 7.129622 GCTTTATAATTGCCGCGCATTATATA 58.870 34.615 8.75 7.95 38.76 0.86
650 1249 7.321271 GCTTTATAATTGCCGCGCATTATATAG 59.679 37.037 19.77 19.77 38.76 1.31
651 1250 3.405170 AATTGCCGCGCATTATATAGC 57.595 42.857 8.75 0.00 38.76 2.97
653 1252 1.081556 TGCCGCGCATTATATAGCCG 61.082 55.000 8.75 0.00 31.71 5.52
657 1256 2.665777 CGCATTATATAGCCGCGCT 58.334 52.632 5.56 4.15 43.41 5.92
658 1257 0.572590 CGCATTATATAGCCGCGCTC 59.427 55.000 5.56 0.00 40.44 5.03
659 1258 0.572590 GCATTATATAGCCGCGCTCG 59.427 55.000 5.56 0.00 40.44 5.03
660 1259 1.797713 GCATTATATAGCCGCGCTCGA 60.798 52.381 5.56 0.00 40.44 4.04
661 1260 2.112522 CATTATATAGCCGCGCTCGAG 58.887 52.381 8.45 8.45 40.44 4.04
662 1261 1.162698 TTATATAGCCGCGCTCGAGT 58.837 50.000 15.13 0.00 40.44 4.18
663 1262 0.446616 TATATAGCCGCGCTCGAGTG 59.553 55.000 21.61 21.61 40.44 3.51
664 1263 1.516365 ATATAGCCGCGCTCGAGTGT 61.516 55.000 25.72 9.74 40.44 3.55
735 3267 2.486472 ATCAAGAGAGCTGTGTTGGG 57.514 50.000 18.96 0.00 0.00 4.12
963 4935 1.286880 CCCCACTTTCTGCGCAAAG 59.713 57.895 18.05 18.05 39.03 2.77
1216 5202 2.362503 TCGATCTGCACCCGTCCT 60.363 61.111 0.00 0.00 0.00 3.85
1458 5471 1.666553 CTTGGTCGCTGCGGTAACA 60.667 57.895 23.03 10.00 0.00 2.41
1578 5597 1.292223 CCACGACGGATGGTTCTGT 59.708 57.895 0.00 0.00 44.35 3.41
1628 5647 2.186602 TACAAGCCGGAAATCGCCCA 62.187 55.000 5.05 0.00 37.59 5.36
1758 5789 2.586357 GCTTCCGGTGCCGATCTC 60.586 66.667 12.71 0.00 42.83 2.75
1984 6045 2.108157 GTGGTCCGCACAGTGTCA 59.892 61.111 1.61 0.00 0.00 3.58
2247 6372 2.097954 TGTTGTAGTTGTGTCGTCGTCT 59.902 45.455 0.00 0.00 0.00 4.18
2249 6374 2.723209 TGTAGTTGTGTCGTCGTCTTG 58.277 47.619 0.00 0.00 0.00 3.02
2250 6375 2.097954 TGTAGTTGTGTCGTCGTCTTGT 59.902 45.455 0.00 0.00 0.00 3.16
2252 6377 3.425577 AGTTGTGTCGTCGTCTTGTTA 57.574 42.857 0.00 0.00 0.00 2.41
2298 6439 5.636121 GGTCAGTATTTGTTGTATGTCGTCA 59.364 40.000 0.00 0.00 0.00 4.35
2306 6450 3.427193 TGTTGTATGTCGTCATTGTCGTG 59.573 43.478 0.00 0.00 35.70 4.35
2320 6464 5.238432 TCATTGTCGTGAGTTAATTTGCAGT 59.762 36.000 0.00 0.00 0.00 4.40
2325 6469 5.404366 GTCGTGAGTTAATTTGCAGTCTGTA 59.596 40.000 0.93 0.00 0.00 2.74
2327 6471 7.274904 GTCGTGAGTTAATTTGCAGTCTGTATA 59.725 37.037 0.93 0.00 0.00 1.47
2328 6472 7.979537 TCGTGAGTTAATTTGCAGTCTGTATAT 59.020 33.333 0.93 0.00 0.00 0.86
2371 6578 9.178758 GGATATGAGTTTCTGGTGTAAATTCTT 57.821 33.333 0.00 0.00 0.00 2.52
2377 6584 8.697507 AGTTTCTGGTGTAAATTCTTCTTCAT 57.302 30.769 0.00 0.00 0.00 2.57
2423 6636 4.450976 TCAGTAGTGCACACAATTTCTGT 58.549 39.130 21.04 0.00 39.56 3.41
2424 6637 4.511454 TCAGTAGTGCACACAATTTCTGTC 59.489 41.667 21.04 0.00 35.47 3.51
2468 7515 1.732941 TTTTCATGATGGGTCCGACG 58.267 50.000 0.00 0.00 0.00 5.12
2490 7537 0.755698 CGACCCTAGCTTGCCCTAGA 60.756 60.000 0.00 0.00 37.57 2.43
2496 7543 2.334023 CTAGCTTGCCCTAGATCCCTT 58.666 52.381 0.00 0.00 37.57 3.95
2502 7551 1.284785 TGCCCTAGATCCCTTTGGTTG 59.715 52.381 0.00 0.00 0.00 3.77
2507 7556 3.054065 CCTAGATCCCTTTGGTTGCTCTT 60.054 47.826 0.00 0.00 0.00 2.85
2517 7566 3.117491 TGGTTGCTCTTTCTCTCACTG 57.883 47.619 0.00 0.00 0.00 3.66
2554 7603 3.580895 AGAAGAAAGAAGGAGGGAGACAC 59.419 47.826 0.00 0.00 0.00 3.67
2563 7613 1.878656 GAGGGAGACACAGGACACGG 61.879 65.000 0.00 0.00 0.00 4.94
2634 7684 4.611943 CACGAACTCGAATCCACTCATAT 58.388 43.478 6.05 0.00 43.02 1.78
2645 7695 6.359883 CGAATCCACTCATATAACAGTACACG 59.640 42.308 0.00 0.00 0.00 4.49
2647 7697 5.195185 TCCACTCATATAACAGTACACGGA 58.805 41.667 0.00 0.00 0.00 4.69
2670 7720 1.003851 GAGTTTTATACGCAGGCGCA 58.996 50.000 14.32 0.16 44.19 6.09
2699 7749 4.821589 CCGCGCTCCCCACTTCTC 62.822 72.222 5.56 0.00 0.00 2.87
2700 7750 4.821589 CGCGCTCCCCACTTCTCC 62.822 72.222 5.56 0.00 0.00 3.71
2701 7751 3.706373 GCGCTCCCCACTTCTCCA 61.706 66.667 0.00 0.00 0.00 3.86
2702 7752 3.036429 GCGCTCCCCACTTCTCCAT 62.036 63.158 0.00 0.00 0.00 3.41
2703 7753 1.153289 CGCTCCCCACTTCTCCATG 60.153 63.158 0.00 0.00 0.00 3.66
2705 7755 1.225704 CTCCCCACTTCTCCATGCC 59.774 63.158 0.00 0.00 0.00 4.40
2706 7756 2.276309 CTCCCCACTTCTCCATGCCC 62.276 65.000 0.00 0.00 0.00 5.36
2709 7759 3.197790 CACTTCTCCATGCCCGCG 61.198 66.667 0.00 0.00 0.00 6.46
2764 7827 2.907917 CGGTCTCCCCCGCTCTAG 60.908 72.222 0.00 0.00 41.78 2.43
2783 7846 1.693083 GCGCTAACTAACCCACGCAG 61.693 60.000 0.00 0.00 45.25 5.18
2784 7847 1.082117 CGCTAACTAACCCACGCAGG 61.082 60.000 0.00 0.00 37.03 4.85
2785 7848 0.248289 GCTAACTAACCCACGCAGGA 59.752 55.000 0.00 0.00 41.22 3.86
2786 7849 2.005560 GCTAACTAACCCACGCAGGAC 61.006 57.143 0.00 0.00 41.22 3.85
2797 7860 2.244000 CGCAGGACGTGGATTTTGT 58.756 52.632 0.00 0.00 36.87 2.83
2798 7861 0.165944 CGCAGGACGTGGATTTTGTC 59.834 55.000 0.00 0.00 36.87 3.18
2799 7862 1.523758 GCAGGACGTGGATTTTGTCT 58.476 50.000 0.00 0.00 33.21 3.41
2800 7863 2.695359 GCAGGACGTGGATTTTGTCTA 58.305 47.619 0.00 0.00 33.21 2.59
2801 7864 3.071479 GCAGGACGTGGATTTTGTCTAA 58.929 45.455 0.00 0.00 33.21 2.10
2802 7865 3.120304 GCAGGACGTGGATTTTGTCTAAC 60.120 47.826 0.00 0.00 33.21 2.34
2803 7866 3.122948 CAGGACGTGGATTTTGTCTAACG 59.877 47.826 0.00 0.00 40.38 3.18
2804 7867 2.159747 GGACGTGGATTTTGTCTAACGC 60.160 50.000 0.00 0.00 39.12 4.84
2805 7868 2.477375 GACGTGGATTTTGTCTAACGCA 59.523 45.455 0.00 0.00 39.12 5.24
2806 7869 3.071479 ACGTGGATTTTGTCTAACGCAT 58.929 40.909 0.00 0.00 39.12 4.73
2807 7870 3.500680 ACGTGGATTTTGTCTAACGCATT 59.499 39.130 0.00 0.00 39.12 3.56
2808 7871 3.845775 CGTGGATTTTGTCTAACGCATTG 59.154 43.478 0.00 0.00 32.88 2.82
2809 7872 3.608073 GTGGATTTTGTCTAACGCATTGC 59.392 43.478 0.00 0.00 0.00 3.56
2829 7892 4.131376 GCACAGCGCATATCCTGT 57.869 55.556 11.47 0.00 42.67 4.00
2830 7893 1.937391 GCACAGCGCATATCCTGTC 59.063 57.895 11.47 0.00 40.12 3.51
2831 7894 1.502163 GCACAGCGCATATCCTGTCC 61.502 60.000 11.47 0.00 40.12 4.02
2832 7895 0.179076 CACAGCGCATATCCTGTCCA 60.179 55.000 11.47 0.00 40.12 4.02
2833 7896 0.179073 ACAGCGCATATCCTGTCCAC 60.179 55.000 11.47 0.00 37.77 4.02
2834 7897 0.882042 CAGCGCATATCCTGTCCACC 60.882 60.000 11.47 0.00 0.00 4.61
2835 7898 1.598130 GCGCATATCCTGTCCACCC 60.598 63.158 0.30 0.00 0.00 4.61
2836 7899 1.829456 CGCATATCCTGTCCACCCA 59.171 57.895 0.00 0.00 0.00 4.51
2837 7900 0.397941 CGCATATCCTGTCCACCCAT 59.602 55.000 0.00 0.00 0.00 4.00
2838 7901 1.609061 CGCATATCCTGTCCACCCATC 60.609 57.143 0.00 0.00 0.00 3.51
2839 7902 1.701847 GCATATCCTGTCCACCCATCT 59.298 52.381 0.00 0.00 0.00 2.90
2840 7903 2.906389 GCATATCCTGTCCACCCATCTA 59.094 50.000 0.00 0.00 0.00 1.98
2841 7904 3.307059 GCATATCCTGTCCACCCATCTAC 60.307 52.174 0.00 0.00 0.00 2.59
2842 7905 2.568546 ATCCTGTCCACCCATCTACA 57.431 50.000 0.00 0.00 0.00 2.74
2843 7906 1.866015 TCCTGTCCACCCATCTACAG 58.134 55.000 0.00 0.00 39.22 2.74
2844 7907 0.179000 CCTGTCCACCCATCTACAGC 59.821 60.000 0.00 0.00 38.39 4.40
2845 7908 0.904649 CTGTCCACCCATCTACAGCA 59.095 55.000 0.00 0.00 33.59 4.41
2846 7909 1.487976 CTGTCCACCCATCTACAGCAT 59.512 52.381 0.00 0.00 33.59 3.79
2847 7910 1.210234 TGTCCACCCATCTACAGCATG 59.790 52.381 0.00 0.00 46.00 4.06
2848 7911 0.181114 TCCACCCATCTACAGCATGC 59.819 55.000 10.51 10.51 42.53 4.06
2849 7912 0.107066 CCACCCATCTACAGCATGCA 60.107 55.000 21.98 0.00 42.53 3.96
2850 7913 1.478105 CCACCCATCTACAGCATGCAT 60.478 52.381 21.98 10.24 42.53 3.96
2851 7914 1.607148 CACCCATCTACAGCATGCATG 59.393 52.381 22.70 22.70 42.53 4.06
2852 7915 1.213678 ACCCATCTACAGCATGCATGT 59.786 47.619 26.79 21.45 42.53 3.21
2853 7916 1.878088 CCCATCTACAGCATGCATGTC 59.122 52.381 26.79 18.66 42.53 3.06
2854 7917 2.567985 CCATCTACAGCATGCATGTCA 58.432 47.619 26.79 11.35 42.53 3.58
2855 7918 3.146847 CCATCTACAGCATGCATGTCAT 58.853 45.455 26.79 14.81 42.53 3.06
2865 7928 3.754955 CATGCATGTCATGTCAACAGAC 58.245 45.455 18.91 0.00 45.79 3.51
2866 7929 2.153645 TGCATGTCATGTCAACAGACC 58.846 47.619 14.26 0.00 0.00 3.85
2867 7930 2.224597 TGCATGTCATGTCAACAGACCT 60.225 45.455 14.26 0.42 0.00 3.85
2868 7931 2.417933 GCATGTCATGTCAACAGACCTC 59.582 50.000 14.26 0.00 0.00 3.85
2869 7932 2.839486 TGTCATGTCAACAGACCTCC 57.161 50.000 0.00 0.00 0.00 4.30
2870 7933 2.329267 TGTCATGTCAACAGACCTCCT 58.671 47.619 0.00 0.00 0.00 3.69
2875 7938 2.224159 TCAACAGACCTCCTGGGCC 61.224 63.158 0.00 0.00 44.45 5.80
2876 7939 2.936032 AACAGACCTCCTGGGCCC 60.936 66.667 17.59 17.59 44.45 5.80
2877 7940 3.810687 AACAGACCTCCTGGGCCCA 62.811 63.158 26.67 26.67 44.45 5.36
2878 7941 3.721706 CAGACCTCCTGGGCCCAC 61.722 72.222 24.45 10.58 44.45 4.61
2879 7942 4.270153 AGACCTCCTGGGCCCACA 62.270 66.667 24.45 9.81 44.45 4.17
2880 7943 3.256960 GACCTCCTGGGCCCACAA 61.257 66.667 24.45 11.18 39.10 3.33
2881 7944 2.780924 ACCTCCTGGGCCCACAAA 60.781 61.111 24.45 8.23 39.10 2.83
2882 7945 2.036256 CCTCCTGGGCCCACAAAG 59.964 66.667 24.45 17.91 0.00 2.77
2883 7946 2.538141 CCTCCTGGGCCCACAAAGA 61.538 63.158 24.45 14.47 0.00 2.52
2884 7947 1.693640 CTCCTGGGCCCACAAAGAT 59.306 57.895 24.45 0.00 0.00 2.40
2885 7948 0.682209 CTCCTGGGCCCACAAAGATG 60.682 60.000 24.45 9.52 0.00 2.90
2886 7949 2.353610 CCTGGGCCCACAAAGATGC 61.354 63.158 24.45 0.00 0.00 3.91
2887 7950 2.283821 TGGGCCCACAAAGATGCC 60.284 61.111 24.45 0.00 43.26 4.40
2889 7952 3.076916 GGCCCACAAAGATGCCCC 61.077 66.667 0.00 0.00 37.94 5.80
2890 7953 2.283821 GCCCACAAAGATGCCCCA 60.284 61.111 0.00 0.00 0.00 4.96
2891 7954 2.649129 GCCCACAAAGATGCCCCAC 61.649 63.158 0.00 0.00 0.00 4.61
2892 7955 2.342650 CCCACAAAGATGCCCCACG 61.343 63.158 0.00 0.00 0.00 4.94
2893 7956 2.342650 CCACAAAGATGCCCCACGG 61.343 63.158 0.00 0.00 0.00 4.94
2894 7957 1.603455 CACAAAGATGCCCCACGGT 60.603 57.895 0.00 0.00 0.00 4.83
2895 7958 1.303317 ACAAAGATGCCCCACGGTC 60.303 57.895 0.00 0.00 0.00 4.79
2896 7959 1.002134 CAAAGATGCCCCACGGTCT 60.002 57.895 0.00 0.00 0.00 3.85
2897 7960 1.002134 AAAGATGCCCCACGGTCTG 60.002 57.895 0.00 0.00 0.00 3.51
2898 7961 2.484287 AAAGATGCCCCACGGTCTGG 62.484 60.000 0.00 0.00 40.26 3.86
2899 7962 3.399181 GATGCCCCACGGTCTGGA 61.399 66.667 0.00 0.00 43.95 3.86
2900 7963 3.391665 GATGCCCCACGGTCTGGAG 62.392 68.421 0.00 0.00 43.95 3.86
2903 7966 3.402681 CCCCACGGTCTGGAGCAT 61.403 66.667 0.84 0.00 43.95 3.79
2904 7967 2.124983 CCCACGGTCTGGAGCATG 60.125 66.667 0.84 0.00 43.95 4.06
2905 7968 2.124983 CCACGGTCTGGAGCATGG 60.125 66.667 0.65 0.65 43.95 3.66
2906 7969 2.659063 CCACGGTCTGGAGCATGGA 61.659 63.158 8.92 0.00 44.05 3.41
2907 7970 1.296392 CACGGTCTGGAGCATGGAA 59.704 57.895 0.00 0.00 0.00 3.53
2908 7971 0.107508 CACGGTCTGGAGCATGGAAT 60.108 55.000 0.00 0.00 0.00 3.01
2909 7972 0.179000 ACGGTCTGGAGCATGGAATC 59.821 55.000 0.00 0.00 0.00 2.52
2910 7973 0.467384 CGGTCTGGAGCATGGAATCT 59.533 55.000 0.00 0.00 0.00 2.40
2911 7974 1.539929 CGGTCTGGAGCATGGAATCTC 60.540 57.143 0.00 0.00 0.00 2.75
2912 7975 1.767681 GGTCTGGAGCATGGAATCTCT 59.232 52.381 0.00 0.00 0.00 3.10
2913 7976 2.485124 GGTCTGGAGCATGGAATCTCTG 60.485 54.545 0.00 0.00 0.00 3.35
2914 7977 1.767088 TCTGGAGCATGGAATCTCTGG 59.233 52.381 0.00 0.00 0.00 3.86
2915 7978 0.841961 TGGAGCATGGAATCTCTGGG 59.158 55.000 0.00 0.00 0.00 4.45
2916 7979 0.842635 GGAGCATGGAATCTCTGGGT 59.157 55.000 0.00 0.00 0.00 4.51
2917 7980 1.202746 GGAGCATGGAATCTCTGGGTC 60.203 57.143 0.00 0.00 0.00 4.46
2918 7981 1.767681 GAGCATGGAATCTCTGGGTCT 59.232 52.381 0.00 0.00 0.00 3.85
2919 7982 2.968574 GAGCATGGAATCTCTGGGTCTA 59.031 50.000 0.00 0.00 0.00 2.59
2920 7983 2.971330 AGCATGGAATCTCTGGGTCTAG 59.029 50.000 0.00 0.00 0.00 2.43
2921 7984 2.703007 GCATGGAATCTCTGGGTCTAGT 59.297 50.000 0.00 0.00 0.00 2.57
2922 7985 3.244044 GCATGGAATCTCTGGGTCTAGTC 60.244 52.174 0.00 0.00 0.00 2.59
2923 7986 4.222336 CATGGAATCTCTGGGTCTAGTCT 58.778 47.826 0.00 0.00 0.00 3.24
2924 7987 5.389520 CATGGAATCTCTGGGTCTAGTCTA 58.610 45.833 0.00 0.00 0.00 2.59
2925 7988 5.671463 TGGAATCTCTGGGTCTAGTCTAT 57.329 43.478 0.00 0.00 0.00 1.98
2926 7989 6.781857 TGGAATCTCTGGGTCTAGTCTATA 57.218 41.667 0.00 0.00 0.00 1.31
2927 7990 6.544650 TGGAATCTCTGGGTCTAGTCTATAC 58.455 44.000 0.00 0.00 0.00 1.47
2928 7991 5.644636 GGAATCTCTGGGTCTAGTCTATACG 59.355 48.000 0.00 0.00 0.00 3.06
2929 7992 6.436738 AATCTCTGGGTCTAGTCTATACGA 57.563 41.667 0.00 0.00 0.00 3.43
2930 7993 5.471556 TCTCTGGGTCTAGTCTATACGAG 57.528 47.826 0.00 0.00 0.00 4.18
2931 7994 4.900652 TCTCTGGGTCTAGTCTATACGAGT 59.099 45.833 0.00 0.00 30.96 4.18
2932 7995 5.366186 TCTCTGGGTCTAGTCTATACGAGTT 59.634 44.000 0.00 0.00 30.96 3.01
2933 7996 5.609423 TCTGGGTCTAGTCTATACGAGTTC 58.391 45.833 0.00 0.00 30.96 3.01
2934 7997 5.129980 TCTGGGTCTAGTCTATACGAGTTCA 59.870 44.000 0.00 0.00 30.96 3.18
2935 7998 5.748402 TGGGTCTAGTCTATACGAGTTCAA 58.252 41.667 0.00 0.00 30.96 2.69
2936 7999 6.363065 TGGGTCTAGTCTATACGAGTTCAAT 58.637 40.000 0.00 0.00 30.96 2.57
2937 8000 7.512130 TGGGTCTAGTCTATACGAGTTCAATA 58.488 38.462 0.00 0.00 30.96 1.90
2938 8001 8.162085 TGGGTCTAGTCTATACGAGTTCAATAT 58.838 37.037 0.00 0.00 30.96 1.28
2939 8002 8.452534 GGGTCTAGTCTATACGAGTTCAATATG 58.547 40.741 0.00 0.00 30.96 1.78
2940 8003 8.452534 GGTCTAGTCTATACGAGTTCAATATGG 58.547 40.741 0.00 0.00 30.96 2.74
2941 8004 9.217278 GTCTAGTCTATACGAGTTCAATATGGA 57.783 37.037 0.00 0.00 30.96 3.41
2942 8005 9.788889 TCTAGTCTATACGAGTTCAATATGGAA 57.211 33.333 0.00 0.00 30.96 3.53
2969 8032 7.995289 ACAAATTTCAAAGTACATCTGACACA 58.005 30.769 0.00 0.00 0.00 3.72
2970 8033 8.465999 ACAAATTTCAAAGTACATCTGACACAA 58.534 29.630 0.00 0.00 0.00 3.33
2971 8034 8.745837 CAAATTTCAAAGTACATCTGACACAAC 58.254 33.333 0.00 0.00 0.00 3.32
2972 8035 6.993786 TTTCAAAGTACATCTGACACAACA 57.006 33.333 0.00 0.00 0.00 3.33
2973 8036 7.566760 TTTCAAAGTACATCTGACACAACAT 57.433 32.000 0.00 0.00 0.00 2.71
2974 8037 7.566760 TTCAAAGTACATCTGACACAACATT 57.433 32.000 0.00 0.00 0.00 2.71
2975 8038 8.669946 TTCAAAGTACATCTGACACAACATTA 57.330 30.769 0.00 0.00 0.00 1.90
2976 8039 8.669946 TCAAAGTACATCTGACACAACATTAA 57.330 30.769 0.00 0.00 0.00 1.40
2977 8040 9.283768 TCAAAGTACATCTGACACAACATTAAT 57.716 29.630 0.00 0.00 0.00 1.40
2978 8041 9.897744 CAAAGTACATCTGACACAACATTAATT 57.102 29.630 0.00 0.00 0.00 1.40
2984 8047 8.896744 ACATCTGACACAACATTAATTAGATGG 58.103 33.333 0.00 0.00 41.82 3.51
2985 8048 8.896744 CATCTGACACAACATTAATTAGATGGT 58.103 33.333 0.00 3.69 36.82 3.55
2986 8049 8.862325 TCTGACACAACATTAATTAGATGGTT 57.138 30.769 10.43 0.00 0.00 3.67
2987 8050 9.952030 TCTGACACAACATTAATTAGATGGTTA 57.048 29.630 10.43 0.00 0.00 2.85
3085 8148 9.927668 AAAACAAATGAAATCAACTATAGGTGG 57.072 29.630 17.73 0.97 0.00 4.61
3086 8149 8.877864 AACAAATGAAATCAACTATAGGTGGA 57.122 30.769 17.73 5.27 31.63 4.02
3087 8150 8.877864 ACAAATGAAATCAACTATAGGTGGAA 57.122 30.769 17.73 0.00 30.74 3.53
3088 8151 9.308000 ACAAATGAAATCAACTATAGGTGGAAA 57.692 29.630 17.73 0.00 30.74 3.13
3089 8152 9.573133 CAAATGAAATCAACTATAGGTGGAAAC 57.427 33.333 17.73 8.14 30.74 2.78
3090 8153 9.533831 AAATGAAATCAACTATAGGTGGAAACT 57.466 29.630 17.73 0.00 30.74 2.66
3091 8154 9.533831 AATGAAATCAACTATAGGTGGAAACTT 57.466 29.630 17.73 4.53 30.74 2.66
3096 8159 9.892130 AATCAACTATAGGTGGAAACTTAAGAG 57.108 33.333 17.73 0.00 30.74 2.85
3097 8160 8.660295 TCAACTATAGGTGGAAACTTAAGAGA 57.340 34.615 17.73 0.00 0.00 3.10
3098 8161 9.096823 TCAACTATAGGTGGAAACTTAAGAGAA 57.903 33.333 17.73 0.00 0.00 2.87
3099 8162 9.720769 CAACTATAGGTGGAAACTTAAGAGAAA 57.279 33.333 10.15 0.00 0.00 2.52
3106 8169 9.454859 AGGTGGAAACTTAAGAGAAATTATGAG 57.545 33.333 10.09 0.00 0.00 2.90
3107 8170 8.184848 GGTGGAAACTTAAGAGAAATTATGAGC 58.815 37.037 10.09 0.00 0.00 4.26
3108 8171 8.184848 GTGGAAACTTAAGAGAAATTATGAGCC 58.815 37.037 10.09 0.00 0.00 4.70
3109 8172 7.888021 TGGAAACTTAAGAGAAATTATGAGCCA 59.112 33.333 10.09 0.00 0.00 4.75
3110 8173 8.907885 GGAAACTTAAGAGAAATTATGAGCCAT 58.092 33.333 10.09 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.700973 GGTAATTATAAAGAAATTGGAAGCCCA 58.299 33.333 0.00 0.00 41.64 5.36
2 3 8.700973 TGGTAATTATAAAGAAATTGGAAGCCC 58.299 33.333 0.00 0.00 0.00 5.19
28 399 1.065782 TGGCACCGCTACATAATGTGT 60.066 47.619 0.00 0.00 44.95 3.72
35 406 6.040391 ACATAAATTAATTGGCACCGCTACAT 59.960 34.615 0.39 0.00 0.00 2.29
41 412 9.340695 CATACATACATAAATTAATTGGCACCG 57.659 33.333 0.39 0.00 0.00 4.94
66 438 6.426328 ACTGTTTTCATCTTGTTTGTTTTGCA 59.574 30.769 0.00 0.00 0.00 4.08
67 439 6.830736 ACTGTTTTCATCTTGTTTGTTTTGC 58.169 32.000 0.00 0.00 0.00 3.68
68 440 8.016497 TGACTGTTTTCATCTTGTTTGTTTTG 57.984 30.769 0.00 0.00 0.00 2.44
69 441 8.600449 TTGACTGTTTTCATCTTGTTTGTTTT 57.400 26.923 0.00 0.00 0.00 2.43
72 444 7.156876 TCTTGACTGTTTTCATCTTGTTTGT 57.843 32.000 0.00 0.00 0.00 2.83
73 445 6.694411 CCTCTTGACTGTTTTCATCTTGTTTG 59.306 38.462 0.00 0.00 0.00 2.93
74 446 6.183360 CCCTCTTGACTGTTTTCATCTTGTTT 60.183 38.462 0.00 0.00 0.00 2.83
75 447 5.300286 CCCTCTTGACTGTTTTCATCTTGTT 59.700 40.000 0.00 0.00 0.00 2.83
76 448 4.823989 CCCTCTTGACTGTTTTCATCTTGT 59.176 41.667 0.00 0.00 0.00 3.16
77 449 5.065914 TCCCTCTTGACTGTTTTCATCTTG 58.934 41.667 0.00 0.00 0.00 3.02
78 450 5.310409 TCCCTCTTGACTGTTTTCATCTT 57.690 39.130 0.00 0.00 0.00 2.40
79 451 4.263243 CCTCCCTCTTGACTGTTTTCATCT 60.263 45.833 0.00 0.00 0.00 2.90
109 481 6.788456 GGAGGGGAAAAGATAAGAGTATAGGT 59.212 42.308 0.00 0.00 0.00 3.08
110 482 6.213802 GGGAGGGGAAAAGATAAGAGTATAGG 59.786 46.154 0.00 0.00 0.00 2.57
123 495 1.076727 GTGTGGGGGAGGGGAAAAG 59.923 63.158 0.00 0.00 0.00 2.27
124 496 2.475172 GGTGTGGGGGAGGGGAAAA 61.475 63.158 0.00 0.00 0.00 2.29
125 497 2.861974 GGTGTGGGGGAGGGGAAA 60.862 66.667 0.00 0.00 0.00 3.13
162 534 2.033194 GGTTTCGCCTCCGGAGTTG 61.033 63.158 29.25 20.54 34.56 3.16
163 535 2.346365 GGTTTCGCCTCCGGAGTT 59.654 61.111 29.25 0.00 34.56 3.01
164 536 2.793317 TAGGGTTTCGCCTCCGGAGT 62.793 60.000 29.25 10.53 37.43 3.85
169 541 1.449778 GTGCTAGGGTTTCGCCTCC 60.450 63.158 0.00 0.00 37.43 4.30
174 546 1.153628 CTCGGGTGCTAGGGTTTCG 60.154 63.158 0.00 0.00 0.00 3.46
192 564 0.534652 GGGCATGGAGTGAGAGATGC 60.535 60.000 0.00 0.00 40.44 3.91
194 566 1.406065 CGGGGCATGGAGTGAGAGAT 61.406 60.000 0.00 0.00 0.00 2.75
197 569 2.284625 ACGGGGCATGGAGTGAGA 60.285 61.111 0.00 0.00 0.00 3.27
294 666 0.748005 CCTCATGTAAAGGTGGCCCG 60.748 60.000 0.00 0.00 35.12 6.13
300 672 1.985159 TGCACTCCCTCATGTAAAGGT 59.015 47.619 0.00 0.00 31.51 3.50
305 677 2.234661 CAAGACTGCACTCCCTCATGTA 59.765 50.000 0.00 0.00 0.00 2.29
306 678 1.002888 CAAGACTGCACTCCCTCATGT 59.997 52.381 0.00 0.00 0.00 3.21
308 680 1.002888 CACAAGACTGCACTCCCTCAT 59.997 52.381 0.00 0.00 0.00 2.90
309 681 0.394192 CACAAGACTGCACTCCCTCA 59.606 55.000 0.00 0.00 0.00 3.86
311 683 1.757306 CCACAAGACTGCACTCCCT 59.243 57.895 0.00 0.00 0.00 4.20
342 714 2.435586 CTCACCGGAAGCTGCCTG 60.436 66.667 9.46 4.53 0.00 4.85
343 715 3.710722 CCTCACCGGAAGCTGCCT 61.711 66.667 9.46 0.00 33.16 4.75
347 719 1.837051 TGACACCTCACCGGAAGCT 60.837 57.895 9.46 0.00 36.31 3.74
363 735 2.255554 GCGCTCTCTGTCGTGTGA 59.744 61.111 0.00 0.00 0.00 3.58
364 736 3.168604 CGCGCTCTCTGTCGTGTG 61.169 66.667 5.56 0.00 0.00 3.82
365 737 4.406173 CCGCGCTCTCTGTCGTGT 62.406 66.667 5.56 0.00 34.75 4.49
366 738 4.406173 ACCGCGCTCTCTGTCGTG 62.406 66.667 5.56 0.00 36.13 4.35
367 739 4.406173 CACCGCGCTCTCTGTCGT 62.406 66.667 5.56 0.00 0.00 4.34
370 742 3.753434 CTCCACCGCGCTCTCTGT 61.753 66.667 5.56 0.00 0.00 3.41
371 743 3.408501 CTCTCCACCGCGCTCTCTG 62.409 68.421 5.56 0.00 0.00 3.35
372 744 3.137459 CTCTCCACCGCGCTCTCT 61.137 66.667 5.56 0.00 0.00 3.10
373 745 4.200283 CCTCTCCACCGCGCTCTC 62.200 72.222 5.56 0.00 0.00 3.20
379 770 1.372087 CTGATTTGCCTCTCCACCGC 61.372 60.000 0.00 0.00 0.00 5.68
395 786 0.536460 GAAGAAAACCACCGCCCTGA 60.536 55.000 0.00 0.00 0.00 3.86
396 787 0.537371 AGAAGAAAACCACCGCCCTG 60.537 55.000 0.00 0.00 0.00 4.45
397 788 0.185175 AAGAAGAAAACCACCGCCCT 59.815 50.000 0.00 0.00 0.00 5.19
405 796 8.607441 AGCATTTATTTTGGAAGAAGAAAACC 57.393 30.769 0.00 0.00 0.00 3.27
415 806 3.679025 CGCAGCAAGCATTTATTTTGGAA 59.321 39.130 0.00 0.00 46.13 3.53
416 807 3.252400 CGCAGCAAGCATTTATTTTGGA 58.748 40.909 0.00 0.00 46.13 3.53
417 808 3.644805 CGCAGCAAGCATTTATTTTGG 57.355 42.857 0.00 0.00 46.13 3.28
438 829 2.609002 TCCGTTGATCGAGCATTTCATG 59.391 45.455 3.25 0.00 42.86 3.07
439 830 2.905075 TCCGTTGATCGAGCATTTCAT 58.095 42.857 3.25 0.00 42.86 2.57
442 833 1.942657 CCATCCGTTGATCGAGCATTT 59.057 47.619 3.25 0.00 42.86 2.32
443 834 1.138859 TCCATCCGTTGATCGAGCATT 59.861 47.619 3.25 0.00 42.86 3.56
444 835 0.752658 TCCATCCGTTGATCGAGCAT 59.247 50.000 3.25 0.00 42.86 3.79
445 836 0.103026 CTCCATCCGTTGATCGAGCA 59.897 55.000 0.00 0.00 42.86 4.26
448 839 1.470051 TGACTCCATCCGTTGATCGA 58.530 50.000 0.00 0.00 42.86 3.59
449 840 2.515926 ATGACTCCATCCGTTGATCG 57.484 50.000 0.00 0.00 39.52 3.69
451 842 3.038280 TGGTATGACTCCATCCGTTGAT 58.962 45.455 0.00 0.00 34.31 2.57
454 845 1.485066 GGTGGTATGACTCCATCCGTT 59.515 52.381 0.00 0.00 37.30 4.44
455 846 1.120530 GGTGGTATGACTCCATCCGT 58.879 55.000 0.00 0.00 37.30 4.69
456 847 0.032130 CGGTGGTATGACTCCATCCG 59.968 60.000 9.88 9.88 40.29 4.18
458 849 0.249911 GGCGGTGGTATGACTCCATC 60.250 60.000 0.00 0.00 37.30 3.51
459 850 0.691078 AGGCGGTGGTATGACTCCAT 60.691 55.000 0.00 0.00 37.30 3.41
460 851 1.305802 AGGCGGTGGTATGACTCCA 60.306 57.895 0.00 0.00 0.00 3.86
461 852 1.442148 GAGGCGGTGGTATGACTCC 59.558 63.158 0.00 0.00 0.00 3.85
462 853 1.043673 AGGAGGCGGTGGTATGACTC 61.044 60.000 0.00 0.00 0.00 3.36
463 854 1.001760 AGGAGGCGGTGGTATGACT 59.998 57.895 0.00 0.00 0.00 3.41
464 855 1.442148 GAGGAGGCGGTGGTATGAC 59.558 63.158 0.00 0.00 0.00 3.06
465 856 1.760875 GGAGGAGGCGGTGGTATGA 60.761 63.158 0.00 0.00 0.00 2.15
480 871 1.507141 AACTTGCTCGTTTGCCGGAG 61.507 55.000 5.05 0.00 37.11 4.63
481 872 1.503818 GAACTTGCTCGTTTGCCGGA 61.504 55.000 5.05 0.00 37.11 5.14
482 873 1.082104 GAACTTGCTCGTTTGCCGG 60.082 57.895 0.00 0.00 37.11 6.13
483 874 1.144969 TAGAACTTGCTCGTTTGCCG 58.855 50.000 0.00 0.00 38.13 5.69
484 875 2.729156 GCATAGAACTTGCTCGTTTGCC 60.729 50.000 0.00 0.00 37.14 4.52
493 884 6.917217 AGATCAGTAAAGCATAGAACTTGC 57.083 37.500 0.00 0.00 40.45 4.01
494 885 8.715191 AGAAGATCAGTAAAGCATAGAACTTG 57.285 34.615 0.00 0.00 0.00 3.16
495 886 7.984617 GGAGAAGATCAGTAAAGCATAGAACTT 59.015 37.037 0.00 0.00 0.00 2.66
496 887 7.496747 GGAGAAGATCAGTAAAGCATAGAACT 58.503 38.462 0.00 0.00 0.00 3.01
497 888 6.419413 CGGAGAAGATCAGTAAAGCATAGAAC 59.581 42.308 0.00 0.00 0.00 3.01
498 889 6.461648 CCGGAGAAGATCAGTAAAGCATAGAA 60.462 42.308 0.00 0.00 0.00 2.10
499 890 5.010112 CCGGAGAAGATCAGTAAAGCATAGA 59.990 44.000 0.00 0.00 0.00 1.98
501 892 4.501571 GCCGGAGAAGATCAGTAAAGCATA 60.502 45.833 5.05 0.00 0.00 3.14
502 893 3.742640 GCCGGAGAAGATCAGTAAAGCAT 60.743 47.826 5.05 0.00 0.00 3.79
505 896 3.131223 TGAGCCGGAGAAGATCAGTAAAG 59.869 47.826 5.05 0.00 0.00 1.85
506 897 3.096852 TGAGCCGGAGAAGATCAGTAAA 58.903 45.455 5.05 0.00 0.00 2.01
508 899 2.025155 GTGAGCCGGAGAAGATCAGTA 58.975 52.381 5.05 0.00 0.00 2.74
509 900 0.820871 GTGAGCCGGAGAAGATCAGT 59.179 55.000 5.05 0.00 0.00 3.41
510 901 0.248825 CGTGAGCCGGAGAAGATCAG 60.249 60.000 5.05 0.00 0.00 2.90
511 902 1.809869 CGTGAGCCGGAGAAGATCA 59.190 57.895 5.05 0.00 0.00 2.92
512 903 4.719997 CGTGAGCCGGAGAAGATC 57.280 61.111 5.05 0.00 0.00 2.75
527 918 1.207329 GCCATTAGACCAGAGTTCCGT 59.793 52.381 0.00 0.00 0.00 4.69
528 919 1.473434 GGCCATTAGACCAGAGTTCCG 60.473 57.143 0.00 0.00 0.00 4.30
530 921 1.941325 CGGCCATTAGACCAGAGTTC 58.059 55.000 2.24 0.00 0.00 3.01
531 922 0.107654 GCGGCCATTAGACCAGAGTT 60.108 55.000 2.24 0.00 0.00 3.01
532 923 1.522569 GCGGCCATTAGACCAGAGT 59.477 57.895 2.24 0.00 0.00 3.24
533 924 1.227674 GGCGGCCATTAGACCAGAG 60.228 63.158 15.62 0.00 0.00 3.35
534 925 1.271840 AAGGCGGCCATTAGACCAGA 61.272 55.000 23.09 0.00 0.00 3.86
535 926 0.394352 AAAGGCGGCCATTAGACCAG 60.394 55.000 23.09 0.00 0.00 4.00
536 927 0.913205 TAAAGGCGGCCATTAGACCA 59.087 50.000 23.09 0.00 0.00 4.02
537 928 1.140252 TCTAAAGGCGGCCATTAGACC 59.860 52.381 31.93 1.89 38.41 3.85
539 930 3.541632 CTTTCTAAAGGCGGCCATTAGA 58.458 45.455 31.93 31.93 40.55 2.10
540 931 3.971032 CTTTCTAAAGGCGGCCATTAG 57.029 47.619 29.14 29.14 36.49 1.73
551 942 2.233922 TCGAGCCAGGTCCTTTCTAAAG 59.766 50.000 0.00 0.00 35.79 1.85
552 943 2.233922 CTCGAGCCAGGTCCTTTCTAAA 59.766 50.000 0.00 0.00 0.00 1.85
553 944 1.825474 CTCGAGCCAGGTCCTTTCTAA 59.175 52.381 0.00 0.00 0.00 2.10
554 945 1.475403 CTCGAGCCAGGTCCTTTCTA 58.525 55.000 0.00 0.00 0.00 2.10
555 946 1.893919 GCTCGAGCCAGGTCCTTTCT 61.894 60.000 27.22 0.00 34.31 2.52
557 948 2.665603 GCTCGAGCCAGGTCCTTT 59.334 61.111 27.22 0.00 34.31 3.11
558 949 3.764466 CGCTCGAGCCAGGTCCTT 61.764 66.667 30.66 0.00 37.91 3.36
566 957 3.785189 TATTTCCCGCGCTCGAGCC 62.785 63.158 30.66 21.46 38.10 4.70
568 959 1.488261 GGTTATTTCCCGCGCTCGAG 61.488 60.000 8.45 8.45 38.10 4.04
569 960 1.519898 GGTTATTTCCCGCGCTCGA 60.520 57.895 5.56 0.00 38.10 4.04
570 961 2.867091 CGGTTATTTCCCGCGCTCG 61.867 63.158 5.56 0.00 38.85 5.03
571 962 1.519898 TCGGTTATTTCCCGCGCTC 60.520 57.895 5.56 0.00 45.09 5.03
572 963 1.812507 GTCGGTTATTTCCCGCGCT 60.813 57.895 5.56 0.00 45.09 5.92
573 964 1.363885 AAGTCGGTTATTTCCCGCGC 61.364 55.000 0.00 0.00 45.09 6.86
574 965 0.372334 CAAGTCGGTTATTTCCCGCG 59.628 55.000 0.00 0.00 45.09 6.46
576 967 2.417586 GGAACAAGTCGGTTATTTCCCG 59.582 50.000 0.00 0.00 46.83 5.14
577 968 3.414269 TGGAACAAGTCGGTTATTTCCC 58.586 45.455 0.00 0.00 32.00 3.97
594 1193 2.862541 CCCAACACAACTCTCATGGAA 58.137 47.619 0.00 0.00 0.00 3.53
595 1194 1.545428 GCCCAACACAACTCTCATGGA 60.545 52.381 0.00 0.00 0.00 3.41
596 1195 0.883833 GCCCAACACAACTCTCATGG 59.116 55.000 0.00 0.00 0.00 3.66
598 1197 2.664402 AAGCCCAACACAACTCTCAT 57.336 45.000 0.00 0.00 0.00 2.90
599 1198 2.297701 GAAAGCCCAACACAACTCTCA 58.702 47.619 0.00 0.00 0.00 3.27
605 1204 1.021202 CACTCGAAAGCCCAACACAA 58.979 50.000 0.00 0.00 0.00 3.33
609 1208 0.668535 AAAGCACTCGAAAGCCCAAC 59.331 50.000 5.24 0.00 0.00 3.77
613 1212 4.735338 GCAATTATAAAGCACTCGAAAGCC 59.265 41.667 5.24 0.00 0.00 4.35
614 1213 4.735338 GGCAATTATAAAGCACTCGAAAGC 59.265 41.667 13.28 0.73 0.00 3.51
616 1215 4.729458 GCGGCAATTATAAAGCACTCGAAA 60.729 41.667 13.28 0.00 0.00 3.46
617 1216 3.242608 GCGGCAATTATAAAGCACTCGAA 60.243 43.478 13.28 0.00 0.00 3.71
618 1217 2.286833 GCGGCAATTATAAAGCACTCGA 59.713 45.455 13.28 0.00 0.00 4.04
621 1220 1.268539 GCGCGGCAATTATAAAGCACT 60.269 47.619 8.83 0.00 0.00 4.40
626 1225 7.129622 GCTATATAATGCGCGGCAATTATAAA 58.870 34.615 20.22 8.65 43.62 1.40
627 1226 6.293190 GGCTATATAATGCGCGGCAATTATAA 60.293 38.462 20.22 12.92 43.62 0.98
628 1227 5.178623 GGCTATATAATGCGCGGCAATTATA 59.821 40.000 19.31 19.31 43.62 0.98
629 1228 4.024048 GGCTATATAATGCGCGGCAATTAT 60.024 41.667 8.83 17.13 43.62 1.28
630 1229 3.311322 GGCTATATAATGCGCGGCAATTA 59.689 43.478 8.83 1.15 43.62 1.40
631 1230 2.097466 GGCTATATAATGCGCGGCAATT 59.903 45.455 8.83 0.00 43.62 2.32
633 1232 1.083489 GGCTATATAATGCGCGGCAA 58.917 50.000 8.83 0.00 43.62 4.52
634 1233 1.081556 CGGCTATATAATGCGCGGCA 61.082 55.000 8.83 7.01 44.86 5.69
635 1234 1.636340 CGGCTATATAATGCGCGGC 59.364 57.895 8.83 0.00 0.00 6.53
636 1235 1.636340 GCGGCTATATAATGCGCGG 59.364 57.895 8.83 0.00 0.00 6.46
637 1236 1.269810 CGCGGCTATATAATGCGCG 59.730 57.895 0.00 0.00 42.42 6.86
641 1240 2.112522 CTCGAGCGCGGCTATATAATG 58.887 52.381 10.69 0.00 39.88 1.90
642 1241 1.743958 ACTCGAGCGCGGCTATATAAT 59.256 47.619 13.61 0.00 39.88 1.28
644 1243 0.446616 CACTCGAGCGCGGCTATATA 59.553 55.000 13.61 0.00 39.88 0.86
645 1244 1.210413 CACTCGAGCGCGGCTATAT 59.790 57.895 13.61 0.00 39.88 0.86
646 1245 1.721664 AACACTCGAGCGCGGCTATA 61.722 55.000 13.61 0.00 39.88 1.31
651 1250 2.733218 TTCAACACTCGAGCGCGG 60.733 61.111 13.61 3.24 38.28 6.46
653 1252 0.161870 GAAGTTCAACACTCGAGCGC 59.838 55.000 13.61 0.00 32.94 5.92
657 1256 4.142026 TGAGGAAAGAAGTTCAACACTCGA 60.142 41.667 5.50 0.00 38.06 4.04
658 1257 4.119862 TGAGGAAAGAAGTTCAACACTCG 58.880 43.478 5.50 0.00 38.06 4.18
659 1258 7.913674 ATATGAGGAAAGAAGTTCAACACTC 57.086 36.000 5.50 7.95 38.06 3.51
714 3246 3.152341 CCCAACACAGCTCTCTTGATTT 58.848 45.455 0.00 0.00 0.00 2.17
735 3267 8.818406 ACAAAAGGTTTTTGTAGCTCGGAAGC 62.818 42.308 15.93 0.00 40.47 3.86
963 4935 1.414550 CTAGGGTAGGAAAGCTGCTCC 59.585 57.143 1.00 6.96 0.00 4.70
1458 5471 1.687612 CAGGTTGGTCTGGCTGGAT 59.312 57.895 0.00 0.00 0.00 3.41
1758 5789 4.497006 GCGATGAATCTTTTCACCATCAGG 60.497 45.833 0.00 0.00 44.36 3.86
1944 5990 1.195448 GTGTAGACGTCGTCGAGGAAA 59.805 52.381 20.87 3.65 37.67 3.13
1984 6045 0.824759 GGATACTCGTTCTGCTGGGT 59.175 55.000 0.00 0.00 0.00 4.51
2247 6372 6.657541 GGAGGATACAACCAACTGAATAACAA 59.342 38.462 0.00 0.00 41.41 2.83
2249 6374 6.177610 TGGAGGATACAACCAACTGAATAAC 58.822 40.000 0.00 0.00 41.14 1.89
2250 6375 6.381498 TGGAGGATACAACCAACTGAATAA 57.619 37.500 0.00 0.00 41.14 1.40
2252 6377 4.324563 CCTGGAGGATACAACCAACTGAAT 60.325 45.833 0.00 0.00 42.87 2.57
2298 6439 5.470098 AGACTGCAAATTAACTCACGACAAT 59.530 36.000 0.00 0.00 0.00 2.71
2347 6554 9.965902 AGAAGAATTTACACCAGAAACTCATAT 57.034 29.630 0.00 0.00 0.00 1.78
2371 6578 6.488683 ACGGTGGAAAACTGAAAATATGAAGA 59.511 34.615 0.00 0.00 38.65 2.87
2377 6584 8.630917 TGAAAATACGGTGGAAAACTGAAAATA 58.369 29.630 0.00 0.00 38.65 1.40
2383 6590 5.432885 ACTGAAAATACGGTGGAAAACTG 57.567 39.130 0.00 0.00 41.37 3.16
2392 6605 3.744426 GTGTGCACTACTGAAAATACGGT 59.256 43.478 19.41 0.00 0.00 4.83
2423 6636 2.060370 TGCCACTGACAGATGCAGA 58.940 52.632 10.08 0.00 36.86 4.26
2424 6637 2.467962 CTGCCACTGACAGATGCAG 58.532 57.895 25.33 25.33 42.85 4.41
2468 7515 2.202946 GGCAAGCTAGGGTCGAGC 60.203 66.667 5.93 5.93 40.42 5.03
2490 7537 3.075134 AGAGAAAGAGCAACCAAAGGGAT 59.925 43.478 0.00 0.00 38.05 3.85
2496 7543 3.470709 CAGTGAGAGAAAGAGCAACCAA 58.529 45.455 0.00 0.00 0.00 3.67
2502 7551 1.735369 CGAGCCAGTGAGAGAAAGAGC 60.735 57.143 0.00 0.00 0.00 4.09
2507 7556 0.603569 GGTTCGAGCCAGTGAGAGAA 59.396 55.000 14.14 0.00 0.00 2.87
2563 7613 2.589442 TTCGTGCACCGGAACCAC 60.589 61.111 9.46 11.11 37.11 4.16
2590 7640 0.169672 CGAGGAAGAAGCCGTTCGTA 59.830 55.000 0.00 0.00 37.79 3.43
2634 7684 2.867624 ACTCCACTCCGTGTACTGTTA 58.132 47.619 0.00 0.00 0.00 2.41
2645 7695 3.195661 CCTGCGTATAAAACTCCACTCC 58.804 50.000 0.00 0.00 0.00 3.85
2647 7697 2.629051 GCCTGCGTATAAAACTCCACT 58.371 47.619 0.00 0.00 0.00 4.00
2728 7778 2.970324 GGCGTTCTGTTGGCGTGA 60.970 61.111 0.00 0.00 0.00 4.35
2764 7827 1.693083 CTGCGTGGGTTAGTTAGCGC 61.693 60.000 0.00 0.00 44.29 5.92
2783 7846 2.159747 GCGTTAGACAAAATCCACGTCC 60.160 50.000 0.00 0.00 37.02 4.79
2784 7847 2.477375 TGCGTTAGACAAAATCCACGTC 59.523 45.455 0.00 0.00 37.02 4.34
2785 7848 2.485903 TGCGTTAGACAAAATCCACGT 58.514 42.857 0.00 0.00 37.02 4.49
2786 7849 3.740044 ATGCGTTAGACAAAATCCACG 57.260 42.857 0.00 0.00 37.50 4.94
2787 7850 3.608073 GCAATGCGTTAGACAAAATCCAC 59.392 43.478 0.00 0.00 0.00 4.02
2788 7851 3.832276 GCAATGCGTTAGACAAAATCCA 58.168 40.909 0.00 0.00 0.00 3.41
2812 7875 1.502163 GGACAGGATATGCGCTGTGC 61.502 60.000 9.73 6.19 46.70 4.57
2813 7876 0.179076 TGGACAGGATATGCGCTGTG 60.179 55.000 9.73 0.00 31.11 3.66
2814 7877 0.179073 GTGGACAGGATATGCGCTGT 60.179 55.000 9.73 2.47 32.83 4.40
2815 7878 0.882042 GGTGGACAGGATATGCGCTG 60.882 60.000 9.73 0.00 0.00 5.18
2816 7879 1.447643 GGTGGACAGGATATGCGCT 59.552 57.895 9.73 0.00 0.00 5.92
2817 7880 1.598130 GGGTGGACAGGATATGCGC 60.598 63.158 0.00 0.00 0.00 6.09
2818 7881 0.397941 ATGGGTGGACAGGATATGCG 59.602 55.000 0.00 0.00 0.00 4.73
2819 7882 1.701847 AGATGGGTGGACAGGATATGC 59.298 52.381 0.00 0.00 0.00 3.14
2820 7883 3.903714 TGTAGATGGGTGGACAGGATATG 59.096 47.826 0.00 0.00 0.00 1.78
2821 7884 4.163427 CTGTAGATGGGTGGACAGGATAT 58.837 47.826 0.00 0.00 36.48 1.63
2822 7885 3.576861 CTGTAGATGGGTGGACAGGATA 58.423 50.000 0.00 0.00 36.48 2.59
2823 7886 2.402564 CTGTAGATGGGTGGACAGGAT 58.597 52.381 0.00 0.00 36.48 3.24
2824 7887 1.866015 CTGTAGATGGGTGGACAGGA 58.134 55.000 0.00 0.00 36.48 3.86
2825 7888 0.179000 GCTGTAGATGGGTGGACAGG 59.821 60.000 3.31 0.00 39.76 4.00
2826 7889 0.904649 TGCTGTAGATGGGTGGACAG 59.095 55.000 0.00 0.00 41.82 3.51
2827 7890 1.210234 CATGCTGTAGATGGGTGGACA 59.790 52.381 0.00 0.00 0.00 4.02
2828 7891 1.959042 CATGCTGTAGATGGGTGGAC 58.041 55.000 0.00 0.00 0.00 4.02
2829 7892 0.181114 GCATGCTGTAGATGGGTGGA 59.819 55.000 11.37 0.00 0.00 4.02
2830 7893 0.107066 TGCATGCTGTAGATGGGTGG 60.107 55.000 20.33 0.00 0.00 4.61
2831 7894 1.607148 CATGCATGCTGTAGATGGGTG 59.393 52.381 20.33 0.00 0.00 4.61
2832 7895 1.213678 ACATGCATGCTGTAGATGGGT 59.786 47.619 26.53 0.00 0.00 4.51
2833 7896 1.878088 GACATGCATGCTGTAGATGGG 59.122 52.381 26.53 0.00 0.00 4.00
2834 7897 2.567985 TGACATGCATGCTGTAGATGG 58.432 47.619 26.53 0.00 0.00 3.51
2845 7908 2.751259 GGTCTGTTGACATGACATGCAT 59.249 45.455 15.49 0.00 44.61 3.96
2846 7909 2.153645 GGTCTGTTGACATGACATGCA 58.846 47.619 15.49 11.25 44.61 3.96
2847 7910 2.417933 GAGGTCTGTTGACATGACATGC 59.582 50.000 15.49 8.84 44.61 4.06
2848 7911 3.005554 GGAGGTCTGTTGACATGACATG 58.994 50.000 14.02 14.02 44.61 3.21
2849 7912 2.909006 AGGAGGTCTGTTGACATGACAT 59.091 45.455 0.00 7.75 44.61 3.06
2850 7913 2.037641 CAGGAGGTCTGTTGACATGACA 59.962 50.000 0.00 0.00 44.61 3.58
2851 7914 2.613977 CCAGGAGGTCTGTTGACATGAC 60.614 54.545 0.00 0.00 44.61 3.06
2852 7915 1.625315 CCAGGAGGTCTGTTGACATGA 59.375 52.381 0.00 0.00 44.61 3.07
2853 7916 1.339438 CCCAGGAGGTCTGTTGACATG 60.339 57.143 0.00 0.00 44.61 3.21
2854 7917 0.987294 CCCAGGAGGTCTGTTGACAT 59.013 55.000 0.00 0.00 44.61 3.06
2855 7918 1.768684 GCCCAGGAGGTCTGTTGACA 61.769 60.000 0.00 0.00 44.61 3.58
2856 7919 1.003233 GCCCAGGAGGTCTGTTGAC 60.003 63.158 0.00 0.00 41.83 3.18
2857 7920 2.224159 GGCCCAGGAGGTCTGTTGA 61.224 63.158 0.00 0.00 41.83 3.18
2858 7921 2.352805 GGCCCAGGAGGTCTGTTG 59.647 66.667 0.00 0.00 41.83 3.33
2859 7922 2.936032 GGGCCCAGGAGGTCTGTT 60.936 66.667 19.95 0.00 41.53 3.16
2860 7923 4.270153 TGGGCCCAGGAGGTCTGT 62.270 66.667 24.45 0.00 41.53 3.41
2861 7924 3.721706 GTGGGCCCAGGAGGTCTG 61.722 72.222 29.55 0.00 41.53 3.51
2862 7925 3.810687 TTGTGGGCCCAGGAGGTCT 62.811 63.158 29.55 0.00 41.53 3.85
2863 7926 2.771328 CTTTGTGGGCCCAGGAGGTC 62.771 65.000 29.55 13.56 40.81 3.85
2864 7927 2.780924 TTTGTGGGCCCAGGAGGT 60.781 61.111 29.55 0.00 38.26 3.85
2865 7928 1.867595 ATCTTTGTGGGCCCAGGAGG 61.868 60.000 29.55 17.51 39.47 4.30
2866 7929 0.682209 CATCTTTGTGGGCCCAGGAG 60.682 60.000 29.55 22.72 0.00 3.69
2867 7930 1.383799 CATCTTTGTGGGCCCAGGA 59.616 57.895 29.55 20.96 0.00 3.86
2868 7931 2.353610 GCATCTTTGTGGGCCCAGG 61.354 63.158 29.55 16.05 0.00 4.45
2869 7932 2.353610 GGCATCTTTGTGGGCCCAG 61.354 63.158 29.55 14.58 40.55 4.45
2870 7933 2.283821 GGCATCTTTGTGGGCCCA 60.284 61.111 24.45 24.45 40.55 5.36
2872 7935 3.076916 GGGGCATCTTTGTGGGCC 61.077 66.667 0.00 0.00 45.67 5.80
2873 7936 2.283821 TGGGGCATCTTTGTGGGC 60.284 61.111 0.00 0.00 0.00 5.36
2874 7937 2.342650 CGTGGGGCATCTTTGTGGG 61.343 63.158 0.00 0.00 0.00 4.61
2875 7938 2.342650 CCGTGGGGCATCTTTGTGG 61.343 63.158 0.00 0.00 0.00 4.17
2876 7939 1.586154 GACCGTGGGGCATCTTTGTG 61.586 60.000 0.00 0.00 36.48 3.33
2877 7940 1.303317 GACCGTGGGGCATCTTTGT 60.303 57.895 0.00 0.00 36.48 2.83
2878 7941 1.002134 AGACCGTGGGGCATCTTTG 60.002 57.895 0.00 0.00 36.48 2.77
2879 7942 1.002134 CAGACCGTGGGGCATCTTT 60.002 57.895 0.00 0.00 36.48 2.52
2880 7943 2.671070 CAGACCGTGGGGCATCTT 59.329 61.111 0.00 0.00 36.48 2.40
2881 7944 3.402681 CCAGACCGTGGGGCATCT 61.403 66.667 0.00 0.00 43.63 2.90
2889 7952 0.107508 ATTCCATGCTCCAGACCGTG 60.108 55.000 0.00 0.00 0.00 4.94
2890 7953 0.179000 GATTCCATGCTCCAGACCGT 59.821 55.000 0.00 0.00 0.00 4.83
2891 7954 0.467384 AGATTCCATGCTCCAGACCG 59.533 55.000 0.00 0.00 0.00 4.79
2892 7955 1.767681 AGAGATTCCATGCTCCAGACC 59.232 52.381 0.00 0.00 0.00 3.85
2893 7956 2.485124 CCAGAGATTCCATGCTCCAGAC 60.485 54.545 0.00 0.00 0.00 3.51
2894 7957 1.767088 CCAGAGATTCCATGCTCCAGA 59.233 52.381 0.00 0.00 0.00 3.86
2895 7958 1.202782 CCCAGAGATTCCATGCTCCAG 60.203 57.143 0.00 0.00 0.00 3.86
2896 7959 0.841961 CCCAGAGATTCCATGCTCCA 59.158 55.000 0.00 0.00 0.00 3.86
2897 7960 0.842635 ACCCAGAGATTCCATGCTCC 59.157 55.000 0.00 0.00 0.00 4.70
2898 7961 1.767681 AGACCCAGAGATTCCATGCTC 59.232 52.381 0.00 0.00 0.00 4.26
2899 7962 1.890552 AGACCCAGAGATTCCATGCT 58.109 50.000 0.00 0.00 0.00 3.79
2900 7963 2.703007 ACTAGACCCAGAGATTCCATGC 59.297 50.000 0.00 0.00 0.00 4.06
2901 7964 4.222336 AGACTAGACCCAGAGATTCCATG 58.778 47.826 0.00 0.00 0.00 3.66
2902 7965 4.551215 AGACTAGACCCAGAGATTCCAT 57.449 45.455 0.00 0.00 0.00 3.41
2903 7966 5.671463 ATAGACTAGACCCAGAGATTCCA 57.329 43.478 0.00 0.00 0.00 3.53
2904 7967 5.644636 CGTATAGACTAGACCCAGAGATTCC 59.355 48.000 0.00 0.00 0.00 3.01
2905 7968 6.465948 TCGTATAGACTAGACCCAGAGATTC 58.534 44.000 0.00 0.00 0.00 2.52
2906 7969 6.043474 ACTCGTATAGACTAGACCCAGAGATT 59.957 42.308 14.00 0.00 0.00 2.40
2907 7970 5.544948 ACTCGTATAGACTAGACCCAGAGAT 59.455 44.000 14.00 1.48 0.00 2.75
2908 7971 4.900652 ACTCGTATAGACTAGACCCAGAGA 59.099 45.833 14.00 1.41 0.00 3.10
2909 7972 5.217978 ACTCGTATAGACTAGACCCAGAG 57.782 47.826 0.00 5.62 0.00 3.35
2910 7973 5.129980 TGAACTCGTATAGACTAGACCCAGA 59.870 44.000 0.00 0.00 0.00 3.86
2911 7974 5.366460 TGAACTCGTATAGACTAGACCCAG 58.634 45.833 0.00 1.39 0.00 4.45
2912 7975 5.363562 TGAACTCGTATAGACTAGACCCA 57.636 43.478 0.00 0.00 0.00 4.51
2913 7976 6.880942 ATTGAACTCGTATAGACTAGACCC 57.119 41.667 0.00 0.00 0.00 4.46
2914 7977 8.452534 CCATATTGAACTCGTATAGACTAGACC 58.547 40.741 0.00 0.00 0.00 3.85
2915 7978 9.217278 TCCATATTGAACTCGTATAGACTAGAC 57.783 37.037 0.00 0.00 0.00 2.59
2916 7979 9.788889 TTCCATATTGAACTCGTATAGACTAGA 57.211 33.333 0.00 0.00 0.00 2.43
2943 8006 9.114952 TGTGTCAGATGTACTTTGAAATTTGTA 57.885 29.630 0.00 0.00 0.00 2.41
2944 8007 7.995289 TGTGTCAGATGTACTTTGAAATTTGT 58.005 30.769 0.00 0.00 0.00 2.83
2945 8008 8.745837 GTTGTGTCAGATGTACTTTGAAATTTG 58.254 33.333 0.00 0.00 0.00 2.32
2946 8009 8.465999 TGTTGTGTCAGATGTACTTTGAAATTT 58.534 29.630 0.00 0.00 0.00 1.82
2947 8010 7.995289 TGTTGTGTCAGATGTACTTTGAAATT 58.005 30.769 0.00 0.00 0.00 1.82
2948 8011 7.566760 TGTTGTGTCAGATGTACTTTGAAAT 57.433 32.000 0.00 0.00 0.00 2.17
2949 8012 6.993786 TGTTGTGTCAGATGTACTTTGAAA 57.006 33.333 0.00 0.00 0.00 2.69
2950 8013 7.566760 AATGTTGTGTCAGATGTACTTTGAA 57.433 32.000 0.00 0.00 0.00 2.69
2951 8014 8.669946 TTAATGTTGTGTCAGATGTACTTTGA 57.330 30.769 0.00 0.00 0.00 2.69
2952 8015 9.897744 AATTAATGTTGTGTCAGATGTACTTTG 57.102 29.630 0.00 0.00 0.00 2.77
2958 8021 8.896744 CCATCTAATTAATGTTGTGTCAGATGT 58.103 33.333 0.00 0.00 36.65 3.06
2959 8022 8.896744 ACCATCTAATTAATGTTGTGTCAGATG 58.103 33.333 0.00 0.00 37.61 2.90
2960 8023 9.466497 AACCATCTAATTAATGTTGTGTCAGAT 57.534 29.630 0.00 0.00 0.00 2.90
2961 8024 8.862325 AACCATCTAATTAATGTTGTGTCAGA 57.138 30.769 0.00 0.00 0.00 3.27
3059 8122 9.927668 CCACCTATAGTTGATTTCATTTGTTTT 57.072 29.630 0.00 0.00 0.00 2.43
3060 8123 9.308000 TCCACCTATAGTTGATTTCATTTGTTT 57.692 29.630 0.00 0.00 0.00 2.83
3061 8124 8.877864 TCCACCTATAGTTGATTTCATTTGTT 57.122 30.769 0.00 0.00 0.00 2.83
3062 8125 8.877864 TTCCACCTATAGTTGATTTCATTTGT 57.122 30.769 0.00 0.00 0.00 2.83
3063 8126 9.573133 GTTTCCACCTATAGTTGATTTCATTTG 57.427 33.333 0.00 0.00 0.00 2.32
3064 8127 9.533831 AGTTTCCACCTATAGTTGATTTCATTT 57.466 29.630 0.00 0.00 0.00 2.32
3065 8128 9.533831 AAGTTTCCACCTATAGTTGATTTCATT 57.466 29.630 0.00 0.00 0.00 2.57
3070 8133 9.892130 CTCTTAAGTTTCCACCTATAGTTGATT 57.108 33.333 1.63 0.00 0.00 2.57
3071 8134 9.268282 TCTCTTAAGTTTCCACCTATAGTTGAT 57.732 33.333 1.63 0.00 0.00 2.57
3072 8135 8.660295 TCTCTTAAGTTTCCACCTATAGTTGA 57.340 34.615 1.63 0.00 0.00 3.18
3073 8136 9.720769 TTTCTCTTAAGTTTCCACCTATAGTTG 57.279 33.333 1.63 0.00 0.00 3.16
3080 8143 9.454859 CTCATAATTTCTCTTAAGTTTCCACCT 57.545 33.333 1.63 0.00 0.00 4.00
3081 8144 8.184848 GCTCATAATTTCTCTTAAGTTTCCACC 58.815 37.037 1.63 0.00 0.00 4.61
3082 8145 8.184848 GGCTCATAATTTCTCTTAAGTTTCCAC 58.815 37.037 1.63 0.00 0.00 4.02
3083 8146 7.888021 TGGCTCATAATTTCTCTTAAGTTTCCA 59.112 33.333 1.63 0.00 0.00 3.53
3084 8147 8.281212 TGGCTCATAATTTCTCTTAAGTTTCC 57.719 34.615 1.63 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.