Multiple sequence alignment - TraesCS1A01G102600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G102600 chr1A 100.000 5621 0 0 1 5621 99013327 99018947 0.000000e+00 10381.0
1 TraesCS1A01G102600 chr1A 97.816 412 7 1 1 412 520464042 520464451 0.000000e+00 710.0
2 TraesCS1A01G102600 chr1A 97.573 412 8 1 1 412 431689193 431688784 0.000000e+00 704.0
3 TraesCS1A01G102600 chr1A 97.573 412 8 1 1 412 431702163 431701754 0.000000e+00 704.0
4 TraesCS1A01G102600 chr1A 88.418 354 27 9 5282 5621 99048754 99049107 1.130000e-111 414.0
5 TraesCS1A01G102600 chr1A 88.050 318 26 8 5222 5533 99071033 99071344 3.200000e-97 366.0
6 TraesCS1A01G102600 chr1B 95.244 3280 114 18 843 4095 132933636 132936900 0.000000e+00 5155.0
7 TraesCS1A01G102600 chr1B 91.279 1399 68 19 4250 5621 132937217 132938588 0.000000e+00 1858.0
8 TraesCS1A01G102600 chr1B 91.066 347 24 6 5282 5621 133032471 133032817 3.970000e-126 462.0
9 TraesCS1A01G102600 chr1B 92.490 253 17 2 5282 5533 133075657 133075908 1.490000e-95 361.0
10 TraesCS1A01G102600 chr1B 90.045 221 10 2 841 1051 132911480 132911698 5.550000e-70 276.0
11 TraesCS1A01G102600 chr1B 94.444 54 3 0 801 854 132909419 132909472 3.610000e-12 84.2
12 TraesCS1A01G102600 chr1D 95.212 2945 96 16 841 3772 80443753 80446665 0.000000e+00 4615.0
13 TraesCS1A01G102600 chr1D 91.304 1380 83 13 4250 5621 80447293 80448643 0.000000e+00 1849.0
14 TraesCS1A01G102600 chr1D 96.187 577 19 2 3675 4248 80446667 80447243 0.000000e+00 941.0
15 TraesCS1A01G102600 chr1D 90.536 317 17 11 5221 5533 80540916 80541223 1.890000e-109 407.0
16 TraesCS1A01G102600 chr1D 94.378 249 11 3 5282 5527 80537068 80537316 4.110000e-101 379.0
17 TraesCS1A01G102600 chr1D 81.250 208 35 3 511 716 80441508 80441713 1.250000e-36 165.0
18 TraesCS1A01G102600 chr1D 88.571 70 8 0 5552 5621 80537383 80537452 1.000000e-12 86.1
19 TraesCS1A01G102600 chr4A 97.816 412 8 1 1 412 248840179 248840589 0.000000e+00 710.0
20 TraesCS1A01G102600 chr3A 97.816 412 7 1 1 412 369759057 369758648 0.000000e+00 710.0
21 TraesCS1A01G102600 chr3A 97.579 413 9 1 1 412 365431043 365431455 0.000000e+00 706.0
22 TraesCS1A01G102600 chr2A 97.816 412 8 1 1 412 357381447 357381857 0.000000e+00 710.0
23 TraesCS1A01G102600 chr2A 97.573 412 10 0 1 412 421355305 421355716 0.000000e+00 706.0
24 TraesCS1A01G102600 chr2A 76.267 434 75 17 1079 1489 775689418 775688990 7.380000e-49 206.0
25 TraesCS1A01G102600 chr7A 97.573 412 10 0 1 412 111310775 111311186 0.000000e+00 706.0
26 TraesCS1A01G102600 chr5B 90.289 381 24 3 2546 2926 692360566 692360933 2.350000e-133 486.0
27 TraesCS1A01G102600 chr2D 76.444 900 185 25 2522 3410 649047304 649048187 3.970000e-126 462.0
28 TraesCS1A01G102600 chrUn 88.127 379 29 7 2548 2926 47692020 47691658 2.400000e-118 436.0
29 TraesCS1A01G102600 chr7B 87.119 295 25 10 5215 5507 95337193 95337476 7.030000e-84 322.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G102600 chr1A 99013327 99018947 5620 False 10381.0 10381 100.000000 1 5621 1 chr1A.!!$F1 5620
1 TraesCS1A01G102600 chr1B 132933636 132938588 4952 False 3506.5 5155 93.261500 843 5621 2 chr1B.!!$F4 4778
2 TraesCS1A01G102600 chr1D 80441508 80448643 7135 False 1892.5 4615 90.988250 511 5621 4 chr1D.!!$F1 5110
3 TraesCS1A01G102600 chr1D 80537068 80541223 4155 False 290.7 407 91.161667 5221 5621 3 chr1D.!!$F2 400
4 TraesCS1A01G102600 chr2D 649047304 649048187 883 False 462.0 462 76.444000 2522 3410 1 chr2D.!!$F1 888

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
479 480 0.041312 CGTTTGGTGGCTCGAAAGTG 60.041 55.000 0.00 0.0 0.00 3.16 F
513 514 0.321564 CCTCATTGGTTCGACAGGCA 60.322 55.000 0.00 0.0 0.00 4.75 F
553 554 0.602905 GGAACCACCAGTCCAGTTCG 60.603 60.000 0.00 0.0 39.58 3.95 F
877 2812 1.000646 GTGGAGTCCCTCGTCCTCT 60.001 63.158 6.74 0.0 33.57 3.69 F
878 2813 1.033202 GTGGAGTCCCTCGTCCTCTC 61.033 65.000 6.74 0.0 33.57 3.20 F
2793 4748 0.321298 TGTTAAGGGTGGAAGAGCGC 60.321 55.000 0.00 0.0 0.00 5.92 F
4174 6392 0.238289 CTGTTGTGGATTGACGCACC 59.762 55.000 0.00 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2080 4035 1.544093 CCAGCATCCATCCATTAGCGT 60.544 52.381 0.00 0.0 0.00 5.07 R
2133 4088 3.969976 TCAAGCCATAACTGCCTCTATCT 59.030 43.478 0.00 0.0 0.00 1.98 R
2134 4089 4.342862 TCAAGCCATAACTGCCTCTATC 57.657 45.455 0.00 0.0 0.00 2.08 R
2793 4748 4.998033 GGAAGTCCAGGTTTCAACTTAGAG 59.002 45.833 8.21 0.0 32.34 2.43 R
2946 4901 0.693049 AGTTCTCTGCCCGGAATGTT 59.307 50.000 0.73 0.0 0.00 2.71 R
4196 6414 0.387929 CTGCATGTTGGGATGATGCC 59.612 55.000 0.00 0.0 41.54 4.40 R
5278 7554 0.039437 CCTTGCTTTGCTCTGCTGTG 60.039 55.000 0.00 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.139183 CTACAAGCAAAGCTGACTTGTC 57.861 45.455 24.44 7.45 43.09 3.18
22 23 1.678101 ACAAGCAAAGCTGACTTGTCC 59.322 47.619 18.54 0.00 41.74 4.02
23 24 0.947244 AAGCAAAGCTGACTTGTCCG 59.053 50.000 0.00 0.00 39.62 4.79
24 25 0.106708 AGCAAAGCTGACTTGTCCGA 59.893 50.000 0.00 0.00 37.57 4.55
25 26 0.235926 GCAAAGCTGACTTGTCCGAC 59.764 55.000 0.00 0.00 35.85 4.79
26 27 1.871080 CAAAGCTGACTTGTCCGACT 58.129 50.000 0.00 0.00 35.85 4.18
27 28 1.795286 CAAAGCTGACTTGTCCGACTC 59.205 52.381 0.00 0.00 35.85 3.36
28 29 1.333177 AAGCTGACTTGTCCGACTCT 58.667 50.000 0.00 0.00 33.84 3.24
29 30 0.600557 AGCTGACTTGTCCGACTCTG 59.399 55.000 0.00 0.00 0.00 3.35
31 32 1.248486 CTGACTTGTCCGACTCTGGA 58.752 55.000 0.00 0.00 35.04 3.86
41 42 1.272781 CGACTCTGGACAAGATTCGC 58.727 55.000 6.66 0.00 46.77 4.70
42 43 1.135257 CGACTCTGGACAAGATTCGCT 60.135 52.381 6.66 0.00 46.77 4.93
43 44 2.535331 GACTCTGGACAAGATTCGCTC 58.465 52.381 0.00 0.00 33.29 5.03
44 45 2.165437 GACTCTGGACAAGATTCGCTCT 59.835 50.000 0.00 0.00 33.29 4.09
45 46 2.564947 ACTCTGGACAAGATTCGCTCTT 59.435 45.455 0.00 0.00 45.34 2.85
46 47 3.764434 ACTCTGGACAAGATTCGCTCTTA 59.236 43.478 0.53 0.00 42.48 2.10
47 48 4.404073 ACTCTGGACAAGATTCGCTCTTAT 59.596 41.667 0.53 0.00 42.48 1.73
48 49 5.594725 ACTCTGGACAAGATTCGCTCTTATA 59.405 40.000 0.53 0.00 42.48 0.98
49 50 6.078202 TCTGGACAAGATTCGCTCTTATAG 57.922 41.667 0.53 0.00 42.48 1.31
50 51 5.594725 TCTGGACAAGATTCGCTCTTATAGT 59.405 40.000 0.53 0.00 42.48 2.12
51 52 6.771267 TCTGGACAAGATTCGCTCTTATAGTA 59.229 38.462 0.53 0.00 42.48 1.82
52 53 7.448777 TCTGGACAAGATTCGCTCTTATAGTAT 59.551 37.037 0.53 0.00 42.48 2.12
53 54 7.952671 TGGACAAGATTCGCTCTTATAGTATT 58.047 34.615 0.53 0.00 42.48 1.89
54 55 8.082852 TGGACAAGATTCGCTCTTATAGTATTC 58.917 37.037 0.53 0.00 42.48 1.75
55 56 8.082852 GGACAAGATTCGCTCTTATAGTATTCA 58.917 37.037 0.53 0.00 42.48 2.57
56 57 8.804688 ACAAGATTCGCTCTTATAGTATTCAC 57.195 34.615 0.53 0.00 42.48 3.18
57 58 8.634444 ACAAGATTCGCTCTTATAGTATTCACT 58.366 33.333 0.53 0.00 42.48 3.41
58 59 9.123709 CAAGATTCGCTCTTATAGTATTCACTC 57.876 37.037 0.53 0.00 42.48 3.51
59 60 7.523219 AGATTCGCTCTTATAGTATTCACTCG 58.477 38.462 0.00 0.00 36.14 4.18
60 61 6.856135 TTCGCTCTTATAGTATTCACTCGA 57.144 37.500 0.00 0.00 36.14 4.04
61 62 6.856135 TCGCTCTTATAGTATTCACTCGAA 57.144 37.500 0.00 0.00 36.14 3.71
62 63 6.889494 TCGCTCTTATAGTATTCACTCGAAG 58.111 40.000 0.00 0.00 36.14 3.79
63 64 6.704937 TCGCTCTTATAGTATTCACTCGAAGA 59.295 38.462 0.00 0.00 35.11 2.87
64 65 6.793203 CGCTCTTATAGTATTCACTCGAAGAC 59.207 42.308 0.00 0.00 42.50 3.01
65 66 7.518529 CGCTCTTATAGTATTCACTCGAAGACA 60.519 40.741 3.16 0.00 44.21 3.41
66 67 8.293867 GCTCTTATAGTATTCACTCGAAGACAT 58.706 37.037 3.16 0.00 44.21 3.06
70 71 9.570468 TTATAGTATTCACTCGAAGACATAGGT 57.430 33.333 3.16 0.00 44.21 3.08
71 72 6.777213 AGTATTCACTCGAAGACATAGGTT 57.223 37.500 3.16 0.00 44.21 3.50
72 73 7.171630 AGTATTCACTCGAAGACATAGGTTT 57.828 36.000 3.16 0.00 44.21 3.27
73 74 7.612677 AGTATTCACTCGAAGACATAGGTTTT 58.387 34.615 3.16 0.00 44.21 2.43
74 75 8.095169 AGTATTCACTCGAAGACATAGGTTTTT 58.905 33.333 3.16 0.00 44.21 1.94
94 95 5.860941 TTTTTGGTTTAGGCATCACTTCA 57.139 34.783 0.00 0.00 0.00 3.02
95 96 5.452078 TTTTGGTTTAGGCATCACTTCAG 57.548 39.130 0.00 0.00 0.00 3.02
96 97 3.788227 TGGTTTAGGCATCACTTCAGT 57.212 42.857 0.00 0.00 0.00 3.41
97 98 3.674997 TGGTTTAGGCATCACTTCAGTC 58.325 45.455 0.00 0.00 0.00 3.51
98 99 3.072330 TGGTTTAGGCATCACTTCAGTCA 59.928 43.478 0.00 0.00 0.00 3.41
99 100 4.263462 TGGTTTAGGCATCACTTCAGTCAT 60.263 41.667 0.00 0.00 0.00 3.06
100 101 4.702131 GGTTTAGGCATCACTTCAGTCATT 59.298 41.667 0.00 0.00 0.00 2.57
101 102 5.163713 GGTTTAGGCATCACTTCAGTCATTC 60.164 44.000 0.00 0.00 0.00 2.67
102 103 3.996921 AGGCATCACTTCAGTCATTCT 57.003 42.857 0.00 0.00 0.00 2.40
118 119 6.274157 GTCATTCTGACTAGTTCTCTTGGA 57.726 41.667 0.00 0.00 43.73 3.53
119 120 6.096695 GTCATTCTGACTAGTTCTCTTGGAC 58.903 44.000 0.00 0.00 43.73 4.02
123 124 2.158219 TGACTAGTTCTCTTGGACCCCA 60.158 50.000 0.00 0.00 0.00 4.96
124 125 2.234168 GACTAGTTCTCTTGGACCCCAC 59.766 54.545 0.00 0.00 30.78 4.61
126 127 1.821088 AGTTCTCTTGGACCCCACTT 58.179 50.000 0.00 0.00 30.78 3.16
128 129 3.323775 AGTTCTCTTGGACCCCACTTAA 58.676 45.455 0.00 0.00 30.78 1.85
130 131 2.696775 TCTCTTGGACCCCACTTAACA 58.303 47.619 0.00 0.00 30.78 2.41
132 133 2.372172 CTCTTGGACCCCACTTAACAGT 59.628 50.000 0.00 0.00 30.78 3.55
133 134 3.581332 CTCTTGGACCCCACTTAACAGTA 59.419 47.826 0.00 0.00 30.78 2.74
134 135 3.325716 TCTTGGACCCCACTTAACAGTAC 59.674 47.826 0.00 0.00 30.78 2.73
137 138 1.620323 GACCCCACTTAACAGTACGGT 59.380 52.381 0.00 0.00 36.65 4.83
138 139 1.345415 ACCCCACTTAACAGTACGGTG 59.655 52.381 0.00 0.00 33.95 4.94
140 141 1.345415 CCCACTTAACAGTACGGTGGT 59.655 52.381 0.00 0.00 43.98 4.16
141 142 2.224354 CCCACTTAACAGTACGGTGGTT 60.224 50.000 0.00 0.29 43.98 3.67
142 143 3.062042 CCACTTAACAGTACGGTGGTTC 58.938 50.000 0.00 0.00 41.52 3.62
143 144 3.062042 CACTTAACAGTACGGTGGTTCC 58.938 50.000 0.00 0.00 0.00 3.62
144 145 2.967887 ACTTAACAGTACGGTGGTTCCT 59.032 45.455 0.00 0.00 0.00 3.36
145 146 4.022068 CACTTAACAGTACGGTGGTTCCTA 60.022 45.833 0.00 0.00 0.00 2.94
146 147 4.774200 ACTTAACAGTACGGTGGTTCCTAT 59.226 41.667 0.00 0.00 0.00 2.57
147 148 3.604875 AACAGTACGGTGGTTCCTATG 57.395 47.619 0.00 0.00 0.00 2.23
148 149 2.811410 ACAGTACGGTGGTTCCTATGA 58.189 47.619 0.00 0.00 0.00 2.15
149 150 2.494870 ACAGTACGGTGGTTCCTATGAC 59.505 50.000 0.00 0.00 0.00 3.06
150 151 2.758979 CAGTACGGTGGTTCCTATGACT 59.241 50.000 0.00 0.00 0.00 3.41
151 152 3.022406 AGTACGGTGGTTCCTATGACTC 58.978 50.000 0.00 0.00 0.00 3.36
153 154 2.253610 ACGGTGGTTCCTATGACTCAA 58.746 47.619 0.00 0.00 0.00 3.02
155 156 2.028476 CGGTGGTTCCTATGACTCAACA 60.028 50.000 0.00 0.00 0.00 3.33
156 157 3.335579 GGTGGTTCCTATGACTCAACAC 58.664 50.000 0.00 0.00 0.00 3.32
157 158 3.244422 GGTGGTTCCTATGACTCAACACA 60.244 47.826 0.00 0.00 0.00 3.72
159 160 4.819630 GTGGTTCCTATGACTCAACACAAA 59.180 41.667 0.00 0.00 0.00 2.83
160 161 5.298276 GTGGTTCCTATGACTCAACACAAAA 59.702 40.000 0.00 0.00 0.00 2.44
161 162 5.530915 TGGTTCCTATGACTCAACACAAAAG 59.469 40.000 0.00 0.00 0.00 2.27
162 163 5.763204 GGTTCCTATGACTCAACACAAAAGA 59.237 40.000 0.00 0.00 0.00 2.52
163 164 6.262273 GGTTCCTATGACTCAACACAAAAGAA 59.738 38.462 0.00 0.00 0.00 2.52
164 165 7.201785 GGTTCCTATGACTCAACACAAAAGAAA 60.202 37.037 0.00 0.00 0.00 2.52
165 166 7.873719 TCCTATGACTCAACACAAAAGAAAA 57.126 32.000 0.00 0.00 0.00 2.29
166 167 8.287439 TCCTATGACTCAACACAAAAGAAAAA 57.713 30.769 0.00 0.00 0.00 1.94
168 169 8.405531 CCTATGACTCAACACAAAAGAAAAAGA 58.594 33.333 0.00 0.00 0.00 2.52
169 170 9.787532 CTATGACTCAACACAAAAGAAAAAGAA 57.212 29.630 0.00 0.00 0.00 2.52
170 171 7.867445 TGACTCAACACAAAAGAAAAAGAAC 57.133 32.000 0.00 0.00 0.00 3.01
171 172 7.657336 TGACTCAACACAAAAGAAAAAGAACT 58.343 30.769 0.00 0.00 0.00 3.01
173 174 8.965986 ACTCAACACAAAAGAAAAAGAACTAC 57.034 30.769 0.00 0.00 0.00 2.73
174 175 8.573035 ACTCAACACAAAAGAAAAAGAACTACA 58.427 29.630 0.00 0.00 0.00 2.74
175 176 9.405587 CTCAACACAAAAGAAAAAGAACTACAA 57.594 29.630 0.00 0.00 0.00 2.41
176 177 9.751542 TCAACACAAAAGAAAAAGAACTACAAA 57.248 25.926 0.00 0.00 0.00 2.83
179 180 9.974980 ACACAAAAGAAAAAGAACTACAAAAGA 57.025 25.926 0.00 0.00 0.00 2.52
191 192 8.973835 AGAACTACAAAAGATCTAAGTCTTCG 57.026 34.615 0.00 0.00 35.70 3.79
192 193 8.794553 AGAACTACAAAAGATCTAAGTCTTCGA 58.205 33.333 0.00 0.00 35.70 3.71
194 195 7.030768 ACTACAAAAGATCTAAGTCTTCGAGC 58.969 38.462 0.00 0.00 37.46 5.03
195 196 6.031751 ACAAAAGATCTAAGTCTTCGAGCT 57.968 37.500 0.00 0.00 37.46 4.09
197 198 4.911514 AAGATCTAAGTCTTCGAGCTCC 57.088 45.455 8.47 0.00 33.24 4.70
198 199 3.892284 AGATCTAAGTCTTCGAGCTCCA 58.108 45.455 8.47 0.00 0.00 3.86
199 200 4.469657 AGATCTAAGTCTTCGAGCTCCAT 58.530 43.478 8.47 0.00 0.00 3.41
203 204 1.036707 AGTCTTCGAGCTCCATAGGC 58.963 55.000 8.47 4.53 0.00 3.93
204 205 1.036707 GTCTTCGAGCTCCATAGGCT 58.963 55.000 8.47 0.00 43.26 4.58
205 206 1.410882 GTCTTCGAGCTCCATAGGCTT 59.589 52.381 8.47 0.00 40.40 4.35
206 207 1.683917 TCTTCGAGCTCCATAGGCTTC 59.316 52.381 8.47 0.00 40.40 3.86
207 208 1.410517 CTTCGAGCTCCATAGGCTTCA 59.589 52.381 8.47 0.00 40.40 3.02
208 209 1.709578 TCGAGCTCCATAGGCTTCAT 58.290 50.000 8.47 0.00 40.40 2.57
210 211 3.435275 TCGAGCTCCATAGGCTTCATAT 58.565 45.455 8.47 0.00 40.40 1.78
211 212 4.600062 TCGAGCTCCATAGGCTTCATATA 58.400 43.478 8.47 0.00 40.40 0.86
212 213 4.642437 TCGAGCTCCATAGGCTTCATATAG 59.358 45.833 8.47 0.00 40.40 1.31
213 214 4.400884 CGAGCTCCATAGGCTTCATATAGT 59.599 45.833 8.47 0.00 40.40 2.12
214 215 5.659463 GAGCTCCATAGGCTTCATATAGTG 58.341 45.833 0.87 0.00 40.40 2.74
215 216 5.090139 AGCTCCATAGGCTTCATATAGTGT 58.910 41.667 0.00 0.00 36.56 3.55
217 218 5.186797 GCTCCATAGGCTTCATATAGTGTCT 59.813 44.000 0.00 0.00 0.00 3.41
221 222 7.177568 TCCATAGGCTTCATATAGTGTCTTCTC 59.822 40.741 0.00 0.00 0.00 2.87
222 223 7.178274 CCATAGGCTTCATATAGTGTCTTCTCT 59.822 40.741 0.00 0.00 0.00 3.10
223 224 8.584157 CATAGGCTTCATATAGTGTCTTCTCTT 58.416 37.037 0.00 0.00 0.00 2.85
226 227 6.699642 GGCTTCATATAGTGTCTTCTCTTGTC 59.300 42.308 0.00 0.00 0.00 3.18
227 228 7.261325 GCTTCATATAGTGTCTTCTCTTGTCA 58.739 38.462 0.00 0.00 0.00 3.58
228 229 7.925483 GCTTCATATAGTGTCTTCTCTTGTCAT 59.075 37.037 0.00 0.00 0.00 3.06
232 233 9.891828 CATATAGTGTCTTCTCTTGTCATAGTC 57.108 37.037 0.00 0.00 0.00 2.59
236 237 6.491745 AGTGTCTTCTCTTGTCATAGTCTTCA 59.508 38.462 0.00 0.00 0.00 3.02
237 238 7.014711 AGTGTCTTCTCTTGTCATAGTCTTCAA 59.985 37.037 0.00 0.00 0.00 2.69
238 239 7.816995 GTGTCTTCTCTTGTCATAGTCTTCAAT 59.183 37.037 0.00 0.00 0.00 2.57
239 240 9.025041 TGTCTTCTCTTGTCATAGTCTTCAATA 57.975 33.333 0.00 0.00 0.00 1.90
265 266 8.518720 TGAATATCTTCATATACCCCCTTTGA 57.481 34.615 0.00 0.00 36.46 2.69
267 268 8.525729 AATATCTTCATATACCCCCTTTGACT 57.474 34.615 0.00 0.00 0.00 3.41
268 269 6.848562 ATCTTCATATACCCCCTTTGACTT 57.151 37.500 0.00 0.00 0.00 3.01
269 270 6.248569 TCTTCATATACCCCCTTTGACTTC 57.751 41.667 0.00 0.00 0.00 3.01
270 271 5.729229 TCTTCATATACCCCCTTTGACTTCA 59.271 40.000 0.00 0.00 0.00 3.02
271 272 6.216662 TCTTCATATACCCCCTTTGACTTCAA 59.783 38.462 0.00 0.00 0.00 2.69
272 273 6.590656 TCATATACCCCCTTTGACTTCAAT 57.409 37.500 0.00 0.00 35.55 2.57
274 275 4.675063 ATACCCCCTTTGACTTCAATGT 57.325 40.909 0.00 0.00 35.55 2.71
275 276 2.876581 ACCCCCTTTGACTTCAATGTC 58.123 47.619 0.00 0.00 35.55 3.06
276 277 2.447047 ACCCCCTTTGACTTCAATGTCT 59.553 45.455 0.00 0.00 37.79 3.41
279 280 4.144297 CCCCTTTGACTTCAATGTCTTCA 58.856 43.478 0.00 0.00 37.79 3.02
280 281 4.768968 CCCCTTTGACTTCAATGTCTTCAT 59.231 41.667 0.00 0.00 37.79 2.57
282 283 6.127897 CCCCTTTGACTTCAATGTCTTCATAC 60.128 42.308 0.00 0.00 37.79 2.39
286 287 9.903682 CTTTGACTTCAATGTCTTCATACATTT 57.096 29.630 0.00 0.00 45.54 2.32
292 293 9.793252 CTTCAATGTCTTCATACATTTTTAGGG 57.207 33.333 0.00 0.00 45.54 3.53
293 294 8.292444 TCAATGTCTTCATACATTTTTAGGGG 57.708 34.615 0.00 0.00 45.54 4.79
295 296 7.881775 ATGTCTTCATACATTTTTAGGGGTC 57.118 36.000 0.00 0.00 36.71 4.46
297 298 7.410174 TGTCTTCATACATTTTTAGGGGTCAT 58.590 34.615 0.00 0.00 0.00 3.06
298 299 7.556275 TGTCTTCATACATTTTTAGGGGTCATC 59.444 37.037 0.00 0.00 0.00 2.92
299 300 7.775561 GTCTTCATACATTTTTAGGGGTCATCT 59.224 37.037 0.00 0.00 0.00 2.90
300 301 7.993183 TCTTCATACATTTTTAGGGGTCATCTC 59.007 37.037 0.00 0.00 0.00 2.75
301 302 7.451731 TCATACATTTTTAGGGGTCATCTCT 57.548 36.000 0.00 0.00 0.00 3.10
302 303 7.282585 TCATACATTTTTAGGGGTCATCTCTG 58.717 38.462 0.00 0.00 0.00 3.35
303 304 4.860022 ACATTTTTAGGGGTCATCTCTGG 58.140 43.478 0.00 0.00 0.00 3.86
305 306 5.491078 ACATTTTTAGGGGTCATCTCTGGTA 59.509 40.000 0.00 0.00 0.00 3.25
307 308 4.348020 TTTAGGGGTCATCTCTGGTAGT 57.652 45.455 0.00 0.00 0.00 2.73
308 309 5.476950 TTTAGGGGTCATCTCTGGTAGTA 57.523 43.478 0.00 0.00 0.00 1.82
309 310 5.476950 TTAGGGGTCATCTCTGGTAGTAA 57.523 43.478 0.00 0.00 0.00 2.24
311 312 4.695606 AGGGGTCATCTCTGGTAGTAAAA 58.304 43.478 0.00 0.00 0.00 1.52
313 314 4.383880 GGGGTCATCTCTGGTAGTAAAACC 60.384 50.000 0.00 0.00 40.19 3.27
314 315 4.430908 GGTCATCTCTGGTAGTAAAACCG 58.569 47.826 0.00 0.00 42.91 4.44
316 317 5.337009 GGTCATCTCTGGTAGTAAAACCGAA 60.337 44.000 0.00 0.00 42.91 4.30
318 319 6.817140 GTCATCTCTGGTAGTAAAACCGAATT 59.183 38.462 0.00 0.00 42.91 2.17
320 321 8.533657 TCATCTCTGGTAGTAAAACCGAATTAA 58.466 33.333 0.00 0.00 42.91 1.40
321 322 9.326413 CATCTCTGGTAGTAAAACCGAATTAAT 57.674 33.333 0.00 0.00 42.91 1.40
322 323 8.712285 TCTCTGGTAGTAAAACCGAATTAATG 57.288 34.615 0.00 0.00 42.91 1.90
323 324 8.533657 TCTCTGGTAGTAAAACCGAATTAATGA 58.466 33.333 0.00 0.00 42.91 2.57
324 325 8.712285 TCTGGTAGTAAAACCGAATTAATGAG 57.288 34.615 0.00 0.00 42.91 2.90
325 326 7.767198 TCTGGTAGTAAAACCGAATTAATGAGG 59.233 37.037 7.66 7.66 42.91 3.86
327 328 7.049754 GGTAGTAAAACCGAATTAATGAGGGA 58.950 38.462 12.43 0.00 0.00 4.20
328 329 6.997239 AGTAAAACCGAATTAATGAGGGAC 57.003 37.500 12.43 6.33 0.00 4.46
330 331 7.173032 AGTAAAACCGAATTAATGAGGGACTT 58.827 34.615 12.43 6.40 41.55 3.01
332 333 5.437191 AACCGAATTAATGAGGGACTTCT 57.563 39.130 12.43 0.00 41.55 2.85
333 334 6.555463 AACCGAATTAATGAGGGACTTCTA 57.445 37.500 12.43 0.00 41.55 2.10
334 335 5.915175 ACCGAATTAATGAGGGACTTCTAC 58.085 41.667 12.43 0.00 41.55 2.59
336 337 5.070580 CCGAATTAATGAGGGACTTCTACCT 59.929 44.000 0.00 0.00 41.55 3.08
337 338 5.986135 CGAATTAATGAGGGACTTCTACCTG 59.014 44.000 0.00 0.00 41.55 4.00
338 339 6.407074 CGAATTAATGAGGGACTTCTACCTGT 60.407 42.308 0.00 0.00 41.55 4.00
339 340 5.677319 TTAATGAGGGACTTCTACCTGTG 57.323 43.478 0.00 0.00 41.55 3.66
340 341 2.696526 TGAGGGACTTCTACCTGTGT 57.303 50.000 0.00 0.00 41.55 3.72
341 342 2.972348 TGAGGGACTTCTACCTGTGTT 58.028 47.619 0.00 0.00 41.55 3.32
343 344 4.684724 TGAGGGACTTCTACCTGTGTTAT 58.315 43.478 0.00 0.00 41.55 1.89
344 345 4.710375 TGAGGGACTTCTACCTGTGTTATC 59.290 45.833 0.00 0.00 41.55 1.75
346 347 4.031611 GGGACTTCTACCTGTGTTATCCT 58.968 47.826 0.00 0.00 0.00 3.24
347 348 4.141914 GGGACTTCTACCTGTGTTATCCTG 60.142 50.000 0.00 0.00 0.00 3.86
348 349 4.434520 GACTTCTACCTGTGTTATCCTGC 58.565 47.826 0.00 0.00 0.00 4.85
349 350 3.838317 ACTTCTACCTGTGTTATCCTGCA 59.162 43.478 0.00 0.00 0.00 4.41
350 351 4.286032 ACTTCTACCTGTGTTATCCTGCAA 59.714 41.667 0.00 0.00 0.00 4.08
351 352 5.045578 ACTTCTACCTGTGTTATCCTGCAAT 60.046 40.000 0.00 0.00 0.00 3.56
352 353 5.435686 TCTACCTGTGTTATCCTGCAATT 57.564 39.130 0.00 0.00 0.00 2.32
353 354 5.428253 TCTACCTGTGTTATCCTGCAATTC 58.572 41.667 0.00 0.00 0.00 2.17
356 357 4.263462 ACCTGTGTTATCCTGCAATTCTCA 60.263 41.667 0.00 0.00 0.00 3.27
358 359 4.650734 TGTGTTATCCTGCAATTCTCACA 58.349 39.130 0.00 0.00 0.00 3.58
360 361 5.534278 TGTGTTATCCTGCAATTCTCACAAA 59.466 36.000 7.48 0.00 31.85 2.83
361 362 5.858581 GTGTTATCCTGCAATTCTCACAAAC 59.141 40.000 0.00 0.00 0.00 2.93
362 363 5.534278 TGTTATCCTGCAATTCTCACAAACA 59.466 36.000 0.00 0.00 0.00 2.83
363 364 3.988379 TCCTGCAATTCTCACAAACAC 57.012 42.857 0.00 0.00 0.00 3.32
364 365 3.286353 TCCTGCAATTCTCACAAACACA 58.714 40.909 0.00 0.00 0.00 3.72
365 366 3.890756 TCCTGCAATTCTCACAAACACAT 59.109 39.130 0.00 0.00 0.00 3.21
367 368 5.534278 TCCTGCAATTCTCACAAACACATTA 59.466 36.000 0.00 0.00 0.00 1.90
368 369 5.860182 CCTGCAATTCTCACAAACACATTAG 59.140 40.000 0.00 0.00 0.00 1.73
370 371 6.437928 TGCAATTCTCACAAACACATTAGTC 58.562 36.000 0.00 0.00 0.00 2.59
372 373 6.381801 CAATTCTCACAAACACATTAGTCCC 58.618 40.000 0.00 0.00 0.00 4.46
373 374 4.974645 TCTCACAAACACATTAGTCCCT 57.025 40.909 0.00 0.00 0.00 4.20
374 375 4.894784 TCTCACAAACACATTAGTCCCTC 58.105 43.478 0.00 0.00 0.00 4.30
376 377 5.042463 TCACAAACACATTAGTCCCTCAA 57.958 39.130 0.00 0.00 0.00 3.02
378 379 4.821805 CACAAACACATTAGTCCCTCAACT 59.178 41.667 0.00 0.00 0.00 3.16
379 380 5.995282 CACAAACACATTAGTCCCTCAACTA 59.005 40.000 0.00 0.00 0.00 2.24
380 381 6.147821 CACAAACACATTAGTCCCTCAACTAG 59.852 42.308 0.00 0.00 33.46 2.57
381 382 5.422214 AACACATTAGTCCCTCAACTAGG 57.578 43.478 0.00 0.00 46.09 3.02
382 383 4.426704 ACACATTAGTCCCTCAACTAGGT 58.573 43.478 0.00 0.00 44.90 3.08
383 384 4.844655 ACACATTAGTCCCTCAACTAGGTT 59.155 41.667 0.00 0.00 44.90 3.50
384 385 5.309806 ACACATTAGTCCCTCAACTAGGTTT 59.690 40.000 0.00 0.00 44.90 3.27
386 387 5.309806 ACATTAGTCCCTCAACTAGGTTTGT 59.690 40.000 0.00 0.00 44.90 2.83
387 388 5.479124 TTAGTCCCTCAACTAGGTTTGTC 57.521 43.478 0.00 0.00 44.90 3.18
389 390 2.036862 GTCCCTCAACTAGGTTTGTCGT 59.963 50.000 0.00 0.00 44.90 4.34
391 392 3.896888 TCCCTCAACTAGGTTTGTCGTTA 59.103 43.478 0.00 0.00 44.90 3.18
392 393 4.344679 TCCCTCAACTAGGTTTGTCGTTAA 59.655 41.667 0.00 0.00 44.90 2.01
394 395 6.211184 TCCCTCAACTAGGTTTGTCGTTAATA 59.789 38.462 0.00 0.00 44.90 0.98
395 396 6.312180 CCCTCAACTAGGTTTGTCGTTAATAC 59.688 42.308 0.00 0.00 44.90 1.89
396 397 7.095270 CCTCAACTAGGTTTGTCGTTAATACT 58.905 38.462 0.00 0.00 40.94 2.12
398 399 7.092716 TCAACTAGGTTTGTCGTTAATACTCC 58.907 38.462 0.00 0.00 0.00 3.85
399 400 6.594788 ACTAGGTTTGTCGTTAATACTCCA 57.405 37.500 0.00 0.00 0.00 3.86
400 401 6.996509 ACTAGGTTTGTCGTTAATACTCCAA 58.003 36.000 0.00 0.00 0.00 3.53
401 402 7.444299 ACTAGGTTTGTCGTTAATACTCCAAA 58.556 34.615 0.00 0.00 0.00 3.28
402 403 7.933033 ACTAGGTTTGTCGTTAATACTCCAAAA 59.067 33.333 0.00 0.00 0.00 2.44
404 405 6.016860 AGGTTTGTCGTTAATACTCCAAAACC 60.017 38.462 0.00 0.00 33.36 3.27
405 406 6.238703 GGTTTGTCGTTAATACTCCAAAACCA 60.239 38.462 8.25 0.00 29.83 3.67
406 407 6.939132 TTGTCGTTAATACTCCAAAACCAA 57.061 33.333 0.00 0.00 0.00 3.67
408 409 6.056884 TGTCGTTAATACTCCAAAACCAACT 58.943 36.000 0.00 0.00 0.00 3.16
409 410 7.215789 TGTCGTTAATACTCCAAAACCAACTA 58.784 34.615 0.00 0.00 0.00 2.24
411 412 6.875195 TCGTTAATACTCCAAAACCAACTAGG 59.125 38.462 0.00 0.00 45.67 3.02
423 424 3.502123 CCAACTAGGTTTGTCCCTCAA 57.498 47.619 0.00 0.00 35.97 3.02
424 425 3.146847 CCAACTAGGTTTGTCCCTCAAC 58.853 50.000 0.00 0.00 35.97 3.18
425 426 3.434453 CCAACTAGGTTTGTCCCTCAACA 60.434 47.826 0.00 0.00 35.97 3.33
426 427 4.204012 CAACTAGGTTTGTCCCTCAACAA 58.796 43.478 0.00 0.00 37.37 2.83
429 430 1.569072 AGGTTTGTCCCTCAACAAGGT 59.431 47.619 0.00 0.00 44.56 3.50
430 431 2.024369 AGGTTTGTCCCTCAACAAGGTT 60.024 45.455 0.00 0.00 44.56 3.50
431 432 2.764010 GGTTTGTCCCTCAACAAGGTTT 59.236 45.455 0.00 0.00 44.56 3.27
433 434 4.323180 GGTTTGTCCCTCAACAAGGTTTTT 60.323 41.667 0.00 0.00 44.56 1.94
434 435 4.729227 TTGTCCCTCAACAAGGTTTTTC 57.271 40.909 0.00 0.00 44.56 2.29
436 437 2.946990 GTCCCTCAACAAGGTTTTTCGA 59.053 45.455 0.00 0.00 44.56 3.71
437 438 3.568430 GTCCCTCAACAAGGTTTTTCGAT 59.432 43.478 0.00 0.00 44.56 3.59
439 440 4.647399 TCCCTCAACAAGGTTTTTCGATTT 59.353 37.500 0.00 0.00 44.56 2.17
440 441 4.982295 CCCTCAACAAGGTTTTTCGATTTC 59.018 41.667 0.00 0.00 44.56 2.17
442 443 6.039616 CCTCAACAAGGTTTTTCGATTTCAA 58.960 36.000 0.00 0.00 40.67 2.69
443 444 6.701400 CCTCAACAAGGTTTTTCGATTTCAAT 59.299 34.615 0.00 0.00 40.67 2.57
446 447 7.547370 TCAACAAGGTTTTTCGATTTCAATTGT 59.453 29.630 5.13 0.00 0.00 2.71
449 450 8.194769 ACAAGGTTTTTCGATTTCAATTGTAGT 58.805 29.630 5.13 0.00 0.00 2.73
450 451 9.030301 CAAGGTTTTTCGATTTCAATTGTAGTT 57.970 29.630 5.13 0.00 0.00 2.24
451 452 9.594478 AAGGTTTTTCGATTTCAATTGTAGTTT 57.406 25.926 5.13 0.00 0.00 2.66
452 453 9.030301 AGGTTTTTCGATTTCAATTGTAGTTTG 57.970 29.630 5.13 0.00 0.00 2.93
457 458 9.743057 TTTCGATTTCAATTGTAGTTTGATTGT 57.257 25.926 5.13 0.00 33.37 2.71
459 460 8.020819 TCGATTTCAATTGTAGTTTGATTGTCC 58.979 33.333 5.13 0.00 33.37 4.02
461 462 5.621197 TCAATTGTAGTTTGATTGTCCCG 57.379 39.130 5.13 0.00 33.60 5.14
462 463 5.067273 TCAATTGTAGTTTGATTGTCCCGT 58.933 37.500 5.13 0.00 33.60 5.28
463 464 5.533154 TCAATTGTAGTTTGATTGTCCCGTT 59.467 36.000 5.13 0.00 33.60 4.44
464 465 6.039941 TCAATTGTAGTTTGATTGTCCCGTTT 59.960 34.615 5.13 0.00 33.60 3.60
465 466 4.822036 TGTAGTTTGATTGTCCCGTTTG 57.178 40.909 0.00 0.00 0.00 2.93
466 467 3.566322 TGTAGTTTGATTGTCCCGTTTGG 59.434 43.478 0.00 0.00 0.00 3.28
467 468 2.661718 AGTTTGATTGTCCCGTTTGGT 58.338 42.857 0.00 0.00 34.77 3.67
468 469 2.360801 AGTTTGATTGTCCCGTTTGGTG 59.639 45.455 0.00 0.00 34.77 4.17
470 471 1.175983 TGATTGTCCCGTTTGGTGGC 61.176 55.000 0.00 0.00 34.77 5.01
471 472 0.893727 GATTGTCCCGTTTGGTGGCT 60.894 55.000 0.00 0.00 34.77 4.75
474 475 3.235481 TCCCGTTTGGTGGCTCGA 61.235 61.111 0.00 0.00 34.77 4.04
475 476 2.281208 CCCGTTTGGTGGCTCGAA 60.281 61.111 0.00 0.00 0.00 3.71
476 477 1.894756 CCCGTTTGGTGGCTCGAAA 60.895 57.895 0.00 0.00 0.00 3.46
477 478 1.574428 CCGTTTGGTGGCTCGAAAG 59.426 57.895 0.00 0.00 0.00 2.62
478 479 1.164041 CCGTTTGGTGGCTCGAAAGT 61.164 55.000 0.00 0.00 0.00 2.66
479 480 0.041312 CGTTTGGTGGCTCGAAAGTG 60.041 55.000 0.00 0.00 0.00 3.16
487 488 3.143675 GCTCGAAAGTGCCTGATCA 57.856 52.632 0.00 0.00 44.29 2.92
490 491 2.416747 CTCGAAAGTGCCTGATCACAA 58.583 47.619 0.00 0.00 39.35 3.33
491 492 2.807967 CTCGAAAGTGCCTGATCACAAA 59.192 45.455 0.00 0.00 39.35 2.83
492 493 3.411446 TCGAAAGTGCCTGATCACAAAT 58.589 40.909 0.00 0.00 39.35 2.32
494 495 3.426695 CGAAAGTGCCTGATCACAAATCC 60.427 47.826 0.00 0.00 39.35 3.01
495 496 2.134789 AGTGCCTGATCACAAATCCC 57.865 50.000 0.00 0.00 39.35 3.85
496 497 1.637553 AGTGCCTGATCACAAATCCCT 59.362 47.619 0.00 0.00 39.35 4.20
497 498 2.019984 GTGCCTGATCACAAATCCCTC 58.980 52.381 0.00 0.00 36.97 4.30
498 499 1.634973 TGCCTGATCACAAATCCCTCA 59.365 47.619 0.00 0.00 0.00 3.86
499 500 2.242965 TGCCTGATCACAAATCCCTCAT 59.757 45.455 0.00 0.00 0.00 2.90
500 501 3.294214 GCCTGATCACAAATCCCTCATT 58.706 45.455 0.00 0.00 0.00 2.57
501 502 3.067742 GCCTGATCACAAATCCCTCATTG 59.932 47.826 0.00 0.00 0.00 2.82
503 504 4.275810 CTGATCACAAATCCCTCATTGGT 58.724 43.478 0.00 0.00 0.00 3.67
504 505 4.676109 TGATCACAAATCCCTCATTGGTT 58.324 39.130 0.00 0.00 0.00 3.67
505 506 4.706476 TGATCACAAATCCCTCATTGGTTC 59.294 41.667 0.00 0.00 0.00 3.62
506 507 3.081061 TCACAAATCCCTCATTGGTTCG 58.919 45.455 0.00 0.00 0.00 3.95
507 508 3.081061 CACAAATCCCTCATTGGTTCGA 58.919 45.455 0.00 0.00 0.00 3.71
509 510 3.081061 CAAATCCCTCATTGGTTCGACA 58.919 45.455 0.00 0.00 0.00 4.35
510 511 2.698855 ATCCCTCATTGGTTCGACAG 57.301 50.000 0.00 0.00 0.00 3.51
512 513 1.026718 CCCTCATTGGTTCGACAGGC 61.027 60.000 0.00 0.00 0.00 4.85
513 514 0.321564 CCTCATTGGTTCGACAGGCA 60.322 55.000 0.00 0.00 0.00 4.75
515 516 0.605319 TCATTGGTTCGACAGGCACC 60.605 55.000 0.00 0.00 0.00 5.01
517 518 2.107041 ATTGGTTCGACAGGCACCGA 62.107 55.000 0.00 0.00 32.71 4.69
518 519 2.107041 TTGGTTCGACAGGCACCGAT 62.107 55.000 0.00 0.00 34.58 4.18
523 524 2.668632 GACAGGCACCGATTCCCA 59.331 61.111 0.00 0.00 0.00 4.37
524 525 1.224592 GACAGGCACCGATTCCCAT 59.775 57.895 0.00 0.00 0.00 4.00
532 533 2.722094 CACCGATTCCCATTTTCTCCA 58.278 47.619 0.00 0.00 0.00 3.86
534 535 3.067180 CACCGATTCCCATTTTCTCCATG 59.933 47.826 0.00 0.00 0.00 3.66
550 551 4.411164 TGGAACCACCAGTCCAGT 57.589 55.556 0.00 0.00 44.64 4.00
553 554 0.602905 GGAACCACCAGTCCAGTTCG 60.603 60.000 0.00 0.00 39.58 3.95
556 557 1.056660 ACCACCAGTCCAGTTCGAAT 58.943 50.000 0.00 0.00 0.00 3.34
571 572 8.234546 TCCAGTTCGAATTTTTAAACTATGCTC 58.765 33.333 0.00 0.00 31.06 4.26
586 587 5.799213 ACTATGCTCCAATCCAACTATAGC 58.201 41.667 0.00 0.00 0.00 2.97
599 600 5.186409 TCCAACTATAGCCCGATGGTATAAC 59.814 44.000 0.00 0.00 38.93 1.89
608 609 2.483876 CGATGGTATAACCTGGTGCAG 58.516 52.381 0.00 0.00 39.58 4.41
619 620 2.133281 CTGGTGCAGGGATTGAATCA 57.867 50.000 7.56 0.00 0.00 2.57
624 625 2.941720 GTGCAGGGATTGAATCAGACTC 59.058 50.000 7.56 0.00 0.00 3.36
629 630 5.198965 CAGGGATTGAATCAGACTCCAATT 58.801 41.667 7.56 0.00 30.29 2.32
633 634 4.551702 TTGAATCAGACTCCAATTCCGA 57.448 40.909 0.00 0.00 0.00 4.55
652 655 5.430886 TCCGAGGCCCTAAATAAACTTAAC 58.569 41.667 0.00 0.00 0.00 2.01
685 688 8.181573 ACTAGTATTTTGAACGCCAATACAATG 58.818 33.333 0.00 0.00 36.31 2.82
686 689 5.804979 AGTATTTTGAACGCCAATACAATGC 59.195 36.000 0.00 0.00 36.31 3.56
722 725 8.854614 ATCTTAAGTGCCTTATCATAATCACC 57.145 34.615 1.63 0.00 0.00 4.02
727 730 7.516198 AGTGCCTTATCATAATCACCAAATC 57.484 36.000 6.41 0.00 0.00 2.17
732 735 8.680903 GCCTTATCATAATCACCAAATCCATAG 58.319 37.037 0.00 0.00 0.00 2.23
751 767 8.929260 TCCATAGAACATATGCAAAATGAGAT 57.071 30.769 16.80 5.12 0.00 2.75
773 789 3.749665 TTTTTGGGCAGGATTCTGTTG 57.250 42.857 2.16 0.00 42.78 3.33
780 796 2.680339 GGCAGGATTCTGTTGCTAGAAC 59.320 50.000 2.16 0.00 42.78 3.01
781 797 3.338249 GCAGGATTCTGTTGCTAGAACA 58.662 45.455 2.16 0.76 42.78 3.18
782 798 3.126000 GCAGGATTCTGTTGCTAGAACAC 59.874 47.826 2.16 0.00 42.78 3.32
783 799 4.573900 CAGGATTCTGTTGCTAGAACACT 58.426 43.478 0.00 0.00 39.33 3.55
784 800 5.724328 CAGGATTCTGTTGCTAGAACACTA 58.276 41.667 0.00 0.00 39.33 2.74
786 802 5.717178 AGGATTCTGTTGCTAGAACACTAGA 59.283 40.000 0.00 0.00 39.33 2.43
788 804 6.874134 GGATTCTGTTGCTAGAACACTAGAAA 59.126 38.462 0.00 1.57 39.33 2.52
790 806 8.854614 ATTCTGTTGCTAGAACACTAGAAAAT 57.145 30.769 0.00 0.00 39.33 1.82
791 807 7.658179 TCTGTTGCTAGAACACTAGAAAATG 57.342 36.000 0.00 0.00 34.66 2.32
792 808 6.650807 TCTGTTGCTAGAACACTAGAAAATGG 59.349 38.462 0.00 0.00 34.66 3.16
793 809 6.296026 TGTTGCTAGAACACTAGAAAATGGT 58.704 36.000 0.00 0.00 34.66 3.55
794 810 7.446769 TGTTGCTAGAACACTAGAAAATGGTA 58.553 34.615 0.00 0.00 34.66 3.25
795 811 7.386848 TGTTGCTAGAACACTAGAAAATGGTAC 59.613 37.037 0.00 0.00 34.66 3.34
796 812 6.403878 TGCTAGAACACTAGAAAATGGTACC 58.596 40.000 4.43 4.43 36.63 3.34
797 813 6.014070 TGCTAGAACACTAGAAAATGGTACCA 60.014 38.462 18.99 18.99 36.63 3.25
798 814 6.877322 GCTAGAACACTAGAAAATGGTACCAA 59.123 38.462 20.76 2.16 36.63 3.67
799 815 7.064728 GCTAGAACACTAGAAAATGGTACCAAG 59.935 40.741 20.76 13.07 36.63 3.61
807 823 5.749462 AGAAAATGGTACCAAGAGAGATGG 58.251 41.667 20.76 0.00 43.84 3.51
865 2800 2.680352 ATCCGACGGCTGTGGAGT 60.680 61.111 9.66 7.63 34.75 3.85
877 2812 1.000646 GTGGAGTCCCTCGTCCTCT 60.001 63.158 6.74 0.00 33.57 3.69
878 2813 1.033202 GTGGAGTCCCTCGTCCTCTC 61.033 65.000 6.74 0.00 33.57 3.20
906 2841 1.048160 TCATCGCAGCCTATCCACCA 61.048 55.000 0.00 0.00 0.00 4.17
1063 3012 2.835431 CCGCCTCCATCTCCTCGT 60.835 66.667 0.00 0.00 0.00 4.18
1074 3023 4.816984 TCCTCGTCGCCCTCCTCC 62.817 72.222 0.00 0.00 0.00 4.30
1227 3176 2.504244 CTCGAGGTCAACGACGGC 60.504 66.667 3.91 0.00 35.88 5.68
1504 3453 7.253883 CCAACACGGTATAGATCGTAGTTTTTC 60.254 40.741 0.00 0.00 37.88 2.29
1508 3457 7.167136 CACGGTATAGATCGTAGTTTTTCTTCC 59.833 40.741 0.00 0.00 37.88 3.46
1526 3478 6.903883 TCTTCCTATTCTTACGCATTGAAC 57.096 37.500 0.00 0.00 0.00 3.18
1612 3564 1.134788 GCTGTACCCGCAGATGTAGTT 60.135 52.381 0.00 0.00 38.70 2.24
1663 3615 9.334947 CTGATTATTGAGACAGTCCAAATACAT 57.665 33.333 8.11 5.17 0.00 2.29
1724 3676 5.582665 AGTTGATTCTTAGAATCCGCAGTTC 59.417 40.000 26.29 12.09 0.00 3.01
1764 3716 2.917933 TCCATTTATTCCTGTGAGGCG 58.082 47.619 0.00 0.00 34.61 5.52
1780 3732 1.076513 AGGCGTACCCCTTTGGAATTT 59.923 47.619 0.00 0.00 38.00 1.82
1789 3741 3.119137 CCCCTTTGGAATTTCCGAATGAC 60.119 47.826 16.82 0.00 39.13 3.06
1905 3858 6.592607 ACCTCTAAGCATTCATTTTGCAATTG 59.407 34.615 0.00 0.00 42.62 2.32
1909 3862 2.476519 GCATTCATTTTGCAATTGCCCG 60.477 45.455 26.94 11.01 39.90 6.13
1967 3922 4.152647 CAGCATACTAGGGTGTCATAGGA 58.847 47.826 0.00 0.00 32.07 2.94
2003 3958 9.461312 TGATGTATTATGAACTTAAAGGCTGTT 57.539 29.630 0.00 0.00 0.00 3.16
2009 3964 3.314080 TGAACTTAAAGGCTGTTGGTTCG 59.686 43.478 13.77 0.00 35.71 3.95
2080 4035 6.073447 TGGGAAGCATTAGTTAATTCAGGA 57.927 37.500 0.00 0.00 0.00 3.86
2105 4060 4.321750 GCTAATGGATGGATGCTGGATTTG 60.322 45.833 0.00 0.00 0.00 2.32
2130 4085 7.155328 GCTTGGCTGTGATATGTTACTATAGT 58.845 38.462 10.87 10.87 0.00 2.12
2131 4086 8.304596 GCTTGGCTGTGATATGTTACTATAGTA 58.695 37.037 8.59 8.59 0.00 1.82
2205 4160 3.342377 TGCAATCGGACTATTTCACCA 57.658 42.857 0.00 0.00 0.00 4.17
2701 4656 2.803030 AGGAGATGCAGTTGCTCAAT 57.197 45.000 5.62 0.00 42.66 2.57
2793 4748 0.321298 TGTTAAGGGTGGAAGAGCGC 60.321 55.000 0.00 0.00 0.00 5.92
2946 4901 6.213802 TCAGTAATGTGTATACCTTTGGACCA 59.786 38.462 0.00 0.00 0.00 4.02
3062 5017 6.769822 AGCCCATCTTAACTACATTCAGATTG 59.230 38.462 0.00 0.00 30.22 2.67
3415 5400 5.815233 TGAGAGGTATGGAGATTGGAATC 57.185 43.478 0.00 0.00 35.64 2.52
3755 5743 0.478072 TGACAGTGGGAATTGTGCCT 59.522 50.000 0.00 0.00 35.89 4.75
3756 5744 1.702401 TGACAGTGGGAATTGTGCCTA 59.298 47.619 0.00 0.00 35.89 3.93
3788 5878 6.767902 TCAGTACTGATTCATGCCTTAAATCC 59.232 38.462 21.74 0.00 34.14 3.01
3798 5888 5.593909 TCATGCCTTAAATCCATAGTTGTGG 59.406 40.000 0.00 0.00 40.76 4.17
3819 5909 6.537301 TGTGGTCACTTACTTTTTGAGTACTG 59.463 38.462 0.00 0.00 40.51 2.74
3893 5983 6.844696 TGATATTCTTAAGCAAAGGTAGCG 57.155 37.500 0.00 0.00 35.75 4.26
4055 6148 3.403038 CCTGTTGTTAGAGAGTTGTGGG 58.597 50.000 0.00 0.00 0.00 4.61
4132 6350 0.250901 ACACCAGGATGTCTGTTGGC 60.251 55.000 0.00 0.00 39.81 4.52
4150 6368 5.479027 TGTTGGCTAGTGTCTGATACTGTTA 59.521 40.000 16.19 0.00 0.00 2.41
4174 6392 0.238289 CTGTTGTGGATTGACGCACC 59.762 55.000 0.00 0.00 0.00 5.01
4196 6414 6.426025 CACCCAACATGATGATGATAGTAGTG 59.574 42.308 4.25 0.00 33.36 2.74
4248 6470 6.398918 TGGTTCTCTAAACACTAGCAATCTC 58.601 40.000 0.00 0.00 0.00 2.75
4372 6644 9.817809 TGTAATTGTAAGAGCTCTACATAAAGG 57.182 33.333 18.59 0.00 0.00 3.11
4410 6682 6.655003 GGATTGTTTCTTTATGACCTGTGAGA 59.345 38.462 0.00 0.00 0.00 3.27
4415 6687 5.344743 TCTTTATGACCTGTGAGATGACC 57.655 43.478 0.00 0.00 0.00 4.02
4467 6739 1.045350 CGGATCTTCCTCTGGAGCCA 61.045 60.000 0.00 0.00 37.83 4.75
4527 6799 4.077184 CACAGCGGGTTCGGCCTA 62.077 66.667 0.00 0.00 37.43 3.93
4633 6905 1.830279 TCTTTGAAGGGCTGCAGATG 58.170 50.000 20.43 0.00 0.00 2.90
4684 6957 7.485418 TTCTACACTTTGTTAGCGATTTTGA 57.515 32.000 0.00 0.00 0.00 2.69
4806 7079 9.989869 GTATCAGGCTTGTTTTAAGATTAGAAC 57.010 33.333 0.00 0.36 0.00 3.01
4807 7080 7.129109 TCAGGCTTGTTTTAAGATTAGAACG 57.871 36.000 0.00 0.00 32.26 3.95
4842 7115 5.964958 TGGTCCTTAGCATCTTCTTTTTG 57.035 39.130 0.00 0.00 0.00 2.44
4843 7116 5.385198 TGGTCCTTAGCATCTTCTTTTTGT 58.615 37.500 0.00 0.00 0.00 2.83
4846 7121 7.504238 TGGTCCTTAGCATCTTCTTTTTGTAAA 59.496 33.333 0.00 0.00 0.00 2.01
4891 7167 3.849911 TCCTATGTCTGCAAACTTCGAG 58.150 45.455 0.00 0.00 0.00 4.04
4906 7182 4.130118 ACTTCGAGCTGTTTTGAAGATGT 58.870 39.130 14.28 0.00 39.82 3.06
4910 7186 4.212004 TCGAGCTGTTTTGAAGATGTCTTG 59.788 41.667 0.00 0.00 36.11 3.02
4915 7191 6.016777 AGCTGTTTTGAAGATGTCTTGGTTAG 60.017 38.462 0.00 0.00 36.11 2.34
4920 7196 5.102953 TGAAGATGTCTTGGTTAGATGGG 57.897 43.478 0.00 0.00 36.11 4.00
4923 7199 2.352561 TGTCTTGGTTAGATGGGGGA 57.647 50.000 0.00 0.00 34.79 4.81
4926 7202 3.399644 TGTCTTGGTTAGATGGGGGAAAA 59.600 43.478 0.00 0.00 34.79 2.29
4936 7212 8.325787 GGTTAGATGGGGGAAAAATGTTAAATT 58.674 33.333 0.00 0.00 0.00 1.82
4948 7224 7.784633 AAAATGTTAAATTGGTGTCACCTTG 57.215 32.000 22.56 0.00 39.58 3.61
4949 7225 6.723298 AATGTTAAATTGGTGTCACCTTGA 57.277 33.333 22.56 9.34 39.58 3.02
4972 7248 4.264172 ACCCACAATAGCCCAAAGTTCATA 60.264 41.667 0.00 0.00 0.00 2.15
4981 7257 3.089284 CCCAAAGTTCATACCCCAGTTC 58.911 50.000 0.00 0.00 0.00 3.01
4997 7273 5.775195 CCCCAGTTCCTTTCTTAAAGTCATT 59.225 40.000 0.00 0.00 36.77 2.57
4998 7274 6.946009 CCCCAGTTCCTTTCTTAAAGTCATTA 59.054 38.462 0.00 0.00 36.77 1.90
5019 7295 9.619316 TCATTATAAGAAAACATGTTCCAAACG 57.381 29.630 12.39 0.00 0.00 3.60
5020 7296 9.619316 CATTATAAGAAAACATGTTCCAAACGA 57.381 29.630 12.39 0.00 0.00 3.85
5022 7298 9.619316 TTATAAGAAAACATGTTCCAAACGATG 57.381 29.630 12.39 0.00 0.00 3.84
5023 7299 5.514274 AGAAAACATGTTCCAAACGATGT 57.486 34.783 12.39 0.00 35.87 3.06
5024 7300 6.627395 AGAAAACATGTTCCAAACGATGTA 57.373 33.333 12.39 0.00 34.42 2.29
5025 7301 7.033530 AGAAAACATGTTCCAAACGATGTAA 57.966 32.000 12.39 0.00 34.42 2.41
5026 7302 7.484975 AGAAAACATGTTCCAAACGATGTAAA 58.515 30.769 12.39 0.00 34.42 2.01
5027 7303 7.647715 AGAAAACATGTTCCAAACGATGTAAAG 59.352 33.333 12.39 0.00 34.42 1.85
5028 7304 5.371115 ACATGTTCCAAACGATGTAAAGG 57.629 39.130 0.00 0.00 34.05 3.11
5029 7305 4.825085 ACATGTTCCAAACGATGTAAAGGT 59.175 37.500 0.00 0.00 34.05 3.50
5030 7306 5.300792 ACATGTTCCAAACGATGTAAAGGTT 59.699 36.000 0.00 0.00 34.05 3.50
5031 7307 5.838531 TGTTCCAAACGATGTAAAGGTTT 57.161 34.783 0.00 0.00 34.42 3.27
5032 7308 6.939132 TGTTCCAAACGATGTAAAGGTTTA 57.061 33.333 0.00 0.00 32.96 2.01
5033 7309 7.330900 TGTTCCAAACGATGTAAAGGTTTAA 57.669 32.000 0.00 0.00 32.96 1.52
5034 7310 7.942990 TGTTCCAAACGATGTAAAGGTTTAAT 58.057 30.769 0.00 0.00 32.96 1.40
5035 7311 8.414778 TGTTCCAAACGATGTAAAGGTTTAATT 58.585 29.630 0.00 0.00 32.96 1.40
5145 7421 1.067582 GACGATGTGGATCCGGACC 59.932 63.158 6.12 11.46 0.00 4.46
5184 7460 3.349006 CGCAAGCAGTGACGCCTT 61.349 61.111 0.00 0.00 0.00 4.35
5197 7473 2.513895 GCCTTGGCCCGCCTATTA 59.486 61.111 7.35 0.00 36.94 0.98
5528 7809 2.038952 CGCCCATTTCCATCATCCTCTA 59.961 50.000 0.00 0.00 0.00 2.43
5534 7815 6.240089 CCCATTTCCATCATCCTCTATTCTCA 60.240 42.308 0.00 0.00 0.00 3.27
5539 7820 5.085920 CCATCATCCTCTATTCTCAGGAGT 58.914 45.833 0.00 0.00 42.28 3.85
5558 7858 6.973474 CAGGAGTAGGAACGAGTTATTAACAG 59.027 42.308 9.15 5.20 0.00 3.16
5570 7870 7.063074 ACGAGTTATTAACAGTCTGAAATTCCG 59.937 37.037 6.91 9.32 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.334419 CGGACAAGTCAGCTTTGCTTG 60.334 52.381 15.89 15.89 43.56 4.01
4 5 0.947244 CGGACAAGTCAGCTTTGCTT 59.053 50.000 2.29 0.00 36.40 3.91
13 14 3.432262 TCCAGAGTCGGACAAGTCA 57.568 52.632 11.27 0.00 0.00 3.41
23 24 2.165437 AGAGCGAATCTTGTCCAGAGTC 59.835 50.000 0.00 0.00 42.30 3.36
24 25 2.175202 AGAGCGAATCTTGTCCAGAGT 58.825 47.619 0.00 0.00 32.99 3.24
25 26 2.957491 AGAGCGAATCTTGTCCAGAG 57.043 50.000 0.00 0.00 32.99 3.35
31 32 8.634444 AGTGAATACTATAAGAGCGAATCTTGT 58.366 33.333 12.17 8.82 41.09 3.16
32 33 9.123709 GAGTGAATACTATAAGAGCGAATCTTG 57.876 37.037 12.17 0.88 42.08 3.02
33 34 8.018520 CGAGTGAATACTATAAGAGCGAATCTT 58.981 37.037 8.20 8.20 43.44 2.40
34 35 7.388224 TCGAGTGAATACTATAAGAGCGAATCT 59.612 37.037 0.00 0.00 37.24 2.40
35 36 7.519843 TCGAGTGAATACTATAAGAGCGAATC 58.480 38.462 0.00 0.00 37.25 2.52
36 37 7.436430 TCGAGTGAATACTATAAGAGCGAAT 57.564 36.000 0.00 0.00 37.25 3.34
37 38 6.856135 TCGAGTGAATACTATAAGAGCGAA 57.144 37.500 0.00 0.00 37.25 4.70
38 39 6.704937 TCTTCGAGTGAATACTATAAGAGCGA 59.295 38.462 0.00 0.00 37.25 4.93
39 40 6.793203 GTCTTCGAGTGAATACTATAAGAGCG 59.207 42.308 0.00 0.00 37.93 5.03
44 45 9.570468 ACCTATGTCTTCGAGTGAATACTATAA 57.430 33.333 0.00 0.00 37.25 0.98
45 46 9.570468 AACCTATGTCTTCGAGTGAATACTATA 57.430 33.333 0.00 0.00 37.25 1.31
46 47 8.466617 AACCTATGTCTTCGAGTGAATACTAT 57.533 34.615 0.00 0.00 37.25 2.12
47 48 7.876936 AACCTATGTCTTCGAGTGAATACTA 57.123 36.000 0.00 0.00 37.25 1.82
48 49 6.777213 AACCTATGTCTTCGAGTGAATACT 57.223 37.500 0.00 0.00 40.66 2.12
49 50 7.829378 AAAACCTATGTCTTCGAGTGAATAC 57.171 36.000 0.00 0.00 32.61 1.89
72 73 5.362430 ACTGAAGTGATGCCTAAACCAAAAA 59.638 36.000 0.00 0.00 0.00 1.94
73 74 4.892934 ACTGAAGTGATGCCTAAACCAAAA 59.107 37.500 0.00 0.00 0.00 2.44
74 75 4.469657 ACTGAAGTGATGCCTAAACCAAA 58.530 39.130 0.00 0.00 0.00 3.28
75 76 4.072131 GACTGAAGTGATGCCTAAACCAA 58.928 43.478 0.00 0.00 0.00 3.67
77 78 3.674997 TGACTGAAGTGATGCCTAAACC 58.325 45.455 0.00 0.00 0.00 3.27
82 83 3.996921 AGAATGACTGAAGTGATGCCT 57.003 42.857 0.00 0.00 0.00 4.75
96 97 7.757279 GGGTCCAAGAGAACTAGTCAGAATGA 61.757 46.154 0.00 0.00 35.65 2.57
97 98 5.415221 GGTCCAAGAGAACTAGTCAGAATG 58.585 45.833 0.00 0.00 37.54 2.67
98 99 4.468153 GGGTCCAAGAGAACTAGTCAGAAT 59.532 45.833 0.00 0.00 30.45 2.40
99 100 3.833070 GGGTCCAAGAGAACTAGTCAGAA 59.167 47.826 0.00 0.00 30.45 3.02
100 101 3.432378 GGGTCCAAGAGAACTAGTCAGA 58.568 50.000 0.00 0.00 30.45 3.27
101 102 2.498078 GGGGTCCAAGAGAACTAGTCAG 59.502 54.545 0.00 0.00 30.45 3.51
102 103 2.158219 TGGGGTCCAAGAGAACTAGTCA 60.158 50.000 0.00 0.00 30.45 3.41
104 105 2.158143 AGTGGGGTCCAAGAGAACTAGT 60.158 50.000 0.00 0.00 34.18 2.57
106 107 2.715763 AGTGGGGTCCAAGAGAACTA 57.284 50.000 0.00 0.00 34.18 2.24
110 111 2.637872 CTGTTAAGTGGGGTCCAAGAGA 59.362 50.000 0.00 0.00 34.18 3.10
112 113 2.414612 ACTGTTAAGTGGGGTCCAAGA 58.585 47.619 0.00 0.00 34.18 3.02
113 114 2.951229 ACTGTTAAGTGGGGTCCAAG 57.049 50.000 0.00 0.00 34.18 3.61
114 115 2.037511 CGTACTGTTAAGTGGGGTCCAA 59.962 50.000 0.00 0.00 37.19 3.53
115 116 1.619827 CGTACTGTTAAGTGGGGTCCA 59.380 52.381 0.00 0.00 37.19 4.02
116 117 1.066645 CCGTACTGTTAAGTGGGGTCC 60.067 57.143 0.00 0.00 37.19 4.46
117 118 1.620323 ACCGTACTGTTAAGTGGGGTC 59.380 52.381 0.00 0.00 38.30 4.46
118 119 1.345415 CACCGTACTGTTAAGTGGGGT 59.655 52.381 0.00 0.00 41.41 4.95
119 120 1.338389 CCACCGTACTGTTAAGTGGGG 60.338 57.143 12.44 0.00 43.47 4.96
123 124 2.967887 AGGAACCACCGTACTGTTAAGT 59.032 45.455 0.00 0.00 44.74 2.24
124 125 3.672767 AGGAACCACCGTACTGTTAAG 57.327 47.619 0.00 0.00 44.74 1.85
126 127 4.158394 GTCATAGGAACCACCGTACTGTTA 59.842 45.833 0.00 0.00 44.74 2.41
128 129 2.494870 GTCATAGGAACCACCGTACTGT 59.505 50.000 0.00 0.00 44.74 3.55
130 131 3.022406 GAGTCATAGGAACCACCGTACT 58.978 50.000 0.00 0.00 44.74 2.73
132 133 3.090210 TGAGTCATAGGAACCACCGTA 57.910 47.619 0.00 0.00 44.74 4.02
133 134 1.933021 TGAGTCATAGGAACCACCGT 58.067 50.000 0.00 0.00 44.74 4.83
134 135 2.028476 TGTTGAGTCATAGGAACCACCG 60.028 50.000 0.00 0.00 44.74 4.94
137 138 4.698201 TTGTGTTGAGTCATAGGAACCA 57.302 40.909 0.00 0.00 0.00 3.67
138 139 5.763204 TCTTTTGTGTTGAGTCATAGGAACC 59.237 40.000 0.00 0.00 0.00 3.62
140 141 7.873719 TTTCTTTTGTGTTGAGTCATAGGAA 57.126 32.000 0.00 0.00 0.00 3.36
141 142 7.873719 TTTTCTTTTGTGTTGAGTCATAGGA 57.126 32.000 0.00 0.00 0.00 2.94
142 143 8.405531 TCTTTTTCTTTTGTGTTGAGTCATAGG 58.594 33.333 0.00 0.00 0.00 2.57
143 144 9.787532 TTCTTTTTCTTTTGTGTTGAGTCATAG 57.212 29.630 0.00 0.00 0.00 2.23
144 145 9.567848 GTTCTTTTTCTTTTGTGTTGAGTCATA 57.432 29.630 0.00 0.00 0.00 2.15
145 146 8.306761 AGTTCTTTTTCTTTTGTGTTGAGTCAT 58.693 29.630 0.00 0.00 0.00 3.06
146 147 7.657336 AGTTCTTTTTCTTTTGTGTTGAGTCA 58.343 30.769 0.00 0.00 0.00 3.41
147 148 9.062674 GTAGTTCTTTTTCTTTTGTGTTGAGTC 57.937 33.333 0.00 0.00 0.00 3.36
148 149 8.573035 TGTAGTTCTTTTTCTTTTGTGTTGAGT 58.427 29.630 0.00 0.00 0.00 3.41
149 150 8.964420 TGTAGTTCTTTTTCTTTTGTGTTGAG 57.036 30.769 0.00 0.00 0.00 3.02
150 151 9.751542 TTTGTAGTTCTTTTTCTTTTGTGTTGA 57.248 25.926 0.00 0.00 0.00 3.18
153 154 9.974980 TCTTTTGTAGTTCTTTTTCTTTTGTGT 57.025 25.926 0.00 0.00 0.00 3.72
165 166 9.413048 CGAAGACTTAGATCTTTTGTAGTTCTT 57.587 33.333 0.00 0.00 39.08 2.52
166 167 8.794553 TCGAAGACTTAGATCTTTTGTAGTTCT 58.205 33.333 0.00 0.00 39.08 3.01
168 169 7.542824 GCTCGAAGACTTAGATCTTTTGTAGTT 59.457 37.037 0.00 0.00 39.08 2.24
169 170 7.030768 GCTCGAAGACTTAGATCTTTTGTAGT 58.969 38.462 0.00 0.00 39.08 2.73
170 171 7.254852 AGCTCGAAGACTTAGATCTTTTGTAG 58.745 38.462 0.00 0.00 39.08 2.74
171 172 7.159322 AGCTCGAAGACTTAGATCTTTTGTA 57.841 36.000 0.00 0.00 39.08 2.41
173 174 5.518487 GGAGCTCGAAGACTTAGATCTTTTG 59.482 44.000 7.83 0.00 39.08 2.44
174 175 5.186021 TGGAGCTCGAAGACTTAGATCTTTT 59.814 40.000 7.83 0.00 39.08 2.27
175 176 4.707448 TGGAGCTCGAAGACTTAGATCTTT 59.293 41.667 7.83 0.00 39.08 2.52
176 177 4.274147 TGGAGCTCGAAGACTTAGATCTT 58.726 43.478 7.83 0.00 41.74 2.40
177 178 3.892284 TGGAGCTCGAAGACTTAGATCT 58.108 45.455 7.83 0.00 0.00 2.75
178 179 4.846779 ATGGAGCTCGAAGACTTAGATC 57.153 45.455 7.83 0.00 0.00 2.75
179 180 4.764823 CCTATGGAGCTCGAAGACTTAGAT 59.235 45.833 7.83 0.00 0.00 1.98
180 181 4.138290 CCTATGGAGCTCGAAGACTTAGA 58.862 47.826 7.83 0.00 0.00 2.10
181 182 3.305064 GCCTATGGAGCTCGAAGACTTAG 60.305 52.174 7.83 2.12 0.00 2.18
182 183 2.623889 GCCTATGGAGCTCGAAGACTTA 59.376 50.000 7.83 0.00 0.00 2.24
183 184 1.410882 GCCTATGGAGCTCGAAGACTT 59.589 52.381 7.83 0.00 0.00 3.01
184 185 1.036707 GCCTATGGAGCTCGAAGACT 58.963 55.000 7.83 0.00 0.00 3.24
185 186 1.036707 AGCCTATGGAGCTCGAAGAC 58.963 55.000 7.83 0.00 34.91 3.01
186 187 1.683917 GAAGCCTATGGAGCTCGAAGA 59.316 52.381 7.83 0.00 40.49 2.87
187 188 1.410517 TGAAGCCTATGGAGCTCGAAG 59.589 52.381 7.83 4.67 40.49 3.79
189 190 1.709578 ATGAAGCCTATGGAGCTCGA 58.290 50.000 7.83 3.70 40.49 4.04
191 192 5.186797 ACACTATATGAAGCCTATGGAGCTC 59.813 44.000 4.71 4.71 40.49 4.09
192 193 5.090139 ACACTATATGAAGCCTATGGAGCT 58.910 41.667 0.00 0.00 44.19 4.09
194 195 6.849085 AGACACTATATGAAGCCTATGGAG 57.151 41.667 0.00 0.00 0.00 3.86
195 196 7.013220 AGAAGACACTATATGAAGCCTATGGA 58.987 38.462 0.00 0.00 0.00 3.41
197 198 8.121305 AGAGAAGACACTATATGAAGCCTATG 57.879 38.462 0.00 0.00 0.00 2.23
198 199 8.584157 CAAGAGAAGACACTATATGAAGCCTAT 58.416 37.037 0.00 0.00 0.00 2.57
199 200 7.561722 ACAAGAGAAGACACTATATGAAGCCTA 59.438 37.037 0.00 0.00 0.00 3.93
205 206 9.634021 ACTATGACAAGAGAAGACACTATATGA 57.366 33.333 0.00 0.00 0.00 2.15
206 207 9.891828 GACTATGACAAGAGAAGACACTATATG 57.108 37.037 0.00 0.00 0.00 1.78
207 208 9.860650 AGACTATGACAAGAGAAGACACTATAT 57.139 33.333 0.00 0.00 0.00 0.86
208 209 9.688091 AAGACTATGACAAGAGAAGACACTATA 57.312 33.333 0.00 0.00 0.00 1.31
210 211 7.665974 TGAAGACTATGACAAGAGAAGACACTA 59.334 37.037 0.00 0.00 0.00 2.74
211 212 6.491745 TGAAGACTATGACAAGAGAAGACACT 59.508 38.462 0.00 0.00 0.00 3.55
212 213 6.682746 TGAAGACTATGACAAGAGAAGACAC 58.317 40.000 0.00 0.00 0.00 3.67
213 214 6.901081 TGAAGACTATGACAAGAGAAGACA 57.099 37.500 0.00 0.00 0.00 3.41
239 240 9.127560 TCAAAGGGGGTATATGAAGATATTCAT 57.872 33.333 18.84 18.84 43.47 2.57
240 241 8.383175 GTCAAAGGGGGTATATGAAGATATTCA 58.617 37.037 5.04 5.04 35.15 2.57
243 244 8.525729 AAGTCAAAGGGGGTATATGAAGATAT 57.474 34.615 0.00 0.00 0.00 1.63
244 245 7.570982 TGAAGTCAAAGGGGGTATATGAAGATA 59.429 37.037 0.00 0.00 0.00 1.98
245 246 6.389869 TGAAGTCAAAGGGGGTATATGAAGAT 59.610 38.462 0.00 0.00 0.00 2.40
246 247 5.729229 TGAAGTCAAAGGGGGTATATGAAGA 59.271 40.000 0.00 0.00 0.00 2.87
247 248 6.001449 TGAAGTCAAAGGGGGTATATGAAG 57.999 41.667 0.00 0.00 0.00 3.02
248 249 6.395780 TTGAAGTCAAAGGGGGTATATGAA 57.604 37.500 0.00 0.00 32.11 2.57
249 250 6.069088 ACATTGAAGTCAAAGGGGGTATATGA 60.069 38.462 0.00 0.00 39.55 2.15
250 251 6.129179 ACATTGAAGTCAAAGGGGGTATATG 58.871 40.000 0.00 0.00 39.55 1.78
251 252 6.160459 AGACATTGAAGTCAAAGGGGGTATAT 59.840 38.462 0.00 0.00 40.98 0.86
253 254 4.292306 AGACATTGAAGTCAAAGGGGGTAT 59.708 41.667 0.00 0.00 40.98 2.73
254 255 3.655777 AGACATTGAAGTCAAAGGGGGTA 59.344 43.478 0.00 0.00 40.98 3.69
255 256 2.447047 AGACATTGAAGTCAAAGGGGGT 59.553 45.455 0.00 0.00 40.98 4.95
257 258 4.144297 TGAAGACATTGAAGTCAAAGGGG 58.856 43.478 0.00 0.00 40.98 4.79
258 259 5.972107 ATGAAGACATTGAAGTCAAAGGG 57.028 39.130 0.00 0.00 40.98 3.95
259 260 7.439157 TGTATGAAGACATTGAAGTCAAAGG 57.561 36.000 0.00 0.00 40.98 3.11
267 268 8.748412 CCCCTAAAAATGTATGAAGACATTGAA 58.252 33.333 4.20 0.00 46.84 2.69
268 269 7.893302 ACCCCTAAAAATGTATGAAGACATTGA 59.107 33.333 4.20 0.00 46.84 2.57
269 270 8.066612 ACCCCTAAAAATGTATGAAGACATTG 57.933 34.615 4.20 0.00 46.84 2.82
271 272 7.410174 TGACCCCTAAAAATGTATGAAGACAT 58.590 34.615 0.00 0.00 41.92 3.06
272 273 6.785076 TGACCCCTAAAAATGTATGAAGACA 58.215 36.000 0.00 0.00 0.00 3.41
274 275 7.872138 AGATGACCCCTAAAAATGTATGAAGA 58.128 34.615 0.00 0.00 0.00 2.87
275 276 7.995488 AGAGATGACCCCTAAAAATGTATGAAG 59.005 37.037 0.00 0.00 0.00 3.02
276 277 7.775093 CAGAGATGACCCCTAAAAATGTATGAA 59.225 37.037 0.00 0.00 0.00 2.57
279 280 6.160459 ACCAGAGATGACCCCTAAAAATGTAT 59.840 38.462 0.00 0.00 0.00 2.29
280 281 5.491078 ACCAGAGATGACCCCTAAAAATGTA 59.509 40.000 0.00 0.00 0.00 2.29
282 283 4.860022 ACCAGAGATGACCCCTAAAAATG 58.140 43.478 0.00 0.00 0.00 2.32
285 286 4.695606 ACTACCAGAGATGACCCCTAAAA 58.304 43.478 0.00 0.00 0.00 1.52
286 287 4.348020 ACTACCAGAGATGACCCCTAAA 57.652 45.455 0.00 0.00 0.00 1.85
287 288 5.476950 TTACTACCAGAGATGACCCCTAA 57.523 43.478 0.00 0.00 0.00 2.69
288 289 5.476950 TTTACTACCAGAGATGACCCCTA 57.523 43.478 0.00 0.00 0.00 3.53
289 290 4.348020 TTTACTACCAGAGATGACCCCT 57.652 45.455 0.00 0.00 0.00 4.79
290 291 4.383880 GGTTTTACTACCAGAGATGACCCC 60.384 50.000 0.00 0.00 38.12 4.95
291 292 4.679905 CGGTTTTACTACCAGAGATGACCC 60.680 50.000 0.00 0.00 38.12 4.46
292 293 4.159135 TCGGTTTTACTACCAGAGATGACC 59.841 45.833 0.00 0.00 38.12 4.02
293 294 5.320549 TCGGTTTTACTACCAGAGATGAC 57.679 43.478 0.00 0.00 38.12 3.06
295 296 8.712285 TTAATTCGGTTTTACTACCAGAGATG 57.288 34.615 0.00 0.00 38.12 2.90
297 298 8.533657 TCATTAATTCGGTTTTACTACCAGAGA 58.466 33.333 0.00 0.00 38.12 3.10
298 299 8.712285 TCATTAATTCGGTTTTACTACCAGAG 57.288 34.615 0.00 0.00 38.12 3.35
299 300 7.767198 CCTCATTAATTCGGTTTTACTACCAGA 59.233 37.037 0.00 0.00 38.12 3.86
300 301 7.012044 CCCTCATTAATTCGGTTTTACTACCAG 59.988 40.741 0.00 0.00 38.12 4.00
301 302 6.824704 CCCTCATTAATTCGGTTTTACTACCA 59.175 38.462 0.00 0.00 38.12 3.25
302 303 7.011763 GTCCCTCATTAATTCGGTTTTACTACC 59.988 40.741 0.00 0.00 34.72 3.18
303 304 7.767659 AGTCCCTCATTAATTCGGTTTTACTAC 59.232 37.037 0.00 0.00 0.00 2.73
305 306 6.718294 AGTCCCTCATTAATTCGGTTTTACT 58.282 36.000 0.00 0.00 0.00 2.24
307 308 7.399634 AGAAGTCCCTCATTAATTCGGTTTTA 58.600 34.615 0.00 0.00 0.00 1.52
308 309 6.246163 AGAAGTCCCTCATTAATTCGGTTTT 58.754 36.000 0.00 0.00 0.00 2.43
309 310 5.816682 AGAAGTCCCTCATTAATTCGGTTT 58.183 37.500 0.00 0.00 0.00 3.27
311 312 5.163332 GGTAGAAGTCCCTCATTAATTCGGT 60.163 44.000 0.00 0.00 0.00 4.69
313 314 5.986135 CAGGTAGAAGTCCCTCATTAATTCG 59.014 44.000 0.00 0.00 0.00 3.34
314 315 6.763610 CACAGGTAGAAGTCCCTCATTAATTC 59.236 42.308 0.00 0.00 0.00 2.17
316 317 5.726793 ACACAGGTAGAAGTCCCTCATTAAT 59.273 40.000 0.00 0.00 0.00 1.40
318 319 4.684724 ACACAGGTAGAAGTCCCTCATTA 58.315 43.478 0.00 0.00 0.00 1.90
320 321 3.191888 ACACAGGTAGAAGTCCCTCAT 57.808 47.619 0.00 0.00 0.00 2.90
321 322 2.696526 ACACAGGTAGAAGTCCCTCA 57.303 50.000 0.00 0.00 0.00 3.86
322 323 4.099727 GGATAACACAGGTAGAAGTCCCTC 59.900 50.000 0.00 0.00 0.00 4.30
323 324 4.031611 GGATAACACAGGTAGAAGTCCCT 58.968 47.826 0.00 0.00 0.00 4.20
324 325 4.031611 AGGATAACACAGGTAGAAGTCCC 58.968 47.826 0.00 0.00 0.00 4.46
325 326 4.680975 GCAGGATAACACAGGTAGAAGTCC 60.681 50.000 0.00 0.00 0.00 3.85
327 328 3.838317 TGCAGGATAACACAGGTAGAAGT 59.162 43.478 0.00 0.00 0.00 3.01
328 329 4.471904 TGCAGGATAACACAGGTAGAAG 57.528 45.455 0.00 0.00 0.00 2.85
330 331 5.189736 AGAATTGCAGGATAACACAGGTAGA 59.810 40.000 0.00 0.00 0.00 2.59
332 333 5.045942 TGAGAATTGCAGGATAACACAGGTA 60.046 40.000 0.00 0.00 0.00 3.08
333 334 4.263462 TGAGAATTGCAGGATAACACAGGT 60.263 41.667 0.00 0.00 0.00 4.00
334 335 4.095483 GTGAGAATTGCAGGATAACACAGG 59.905 45.833 0.00 0.00 0.00 4.00
336 337 4.650734 TGTGAGAATTGCAGGATAACACA 58.349 39.130 0.00 0.00 34.24 3.72
337 338 5.627499 TTGTGAGAATTGCAGGATAACAC 57.373 39.130 0.00 0.00 0.00 3.32
338 339 5.534278 TGTTTGTGAGAATTGCAGGATAACA 59.466 36.000 0.00 0.00 0.00 2.41
339 340 5.858581 GTGTTTGTGAGAATTGCAGGATAAC 59.141 40.000 0.00 0.00 0.00 1.89
340 341 5.534278 TGTGTTTGTGAGAATTGCAGGATAA 59.466 36.000 0.00 0.00 0.00 1.75
341 342 5.069318 TGTGTTTGTGAGAATTGCAGGATA 58.931 37.500 0.00 0.00 0.00 2.59
343 344 3.286353 TGTGTTTGTGAGAATTGCAGGA 58.714 40.909 0.00 0.00 0.00 3.86
344 345 3.713858 TGTGTTTGTGAGAATTGCAGG 57.286 42.857 0.00 0.00 0.00 4.85
346 347 6.389830 ACTAATGTGTTTGTGAGAATTGCA 57.610 33.333 0.00 0.00 0.00 4.08
347 348 5.858581 GGACTAATGTGTTTGTGAGAATTGC 59.141 40.000 0.00 0.00 0.00 3.56
348 349 6.207417 AGGGACTAATGTGTTTGTGAGAATTG 59.793 38.462 0.00 0.00 36.02 2.32
349 350 6.306987 AGGGACTAATGTGTTTGTGAGAATT 58.693 36.000 0.00 0.00 36.02 2.17
350 351 5.880901 AGGGACTAATGTGTTTGTGAGAAT 58.119 37.500 0.00 0.00 36.02 2.40
351 352 5.163248 TGAGGGACTAATGTGTTTGTGAGAA 60.163 40.000 0.00 0.00 41.55 2.87
352 353 4.346709 TGAGGGACTAATGTGTTTGTGAGA 59.653 41.667 0.00 0.00 41.55 3.27
353 354 4.641396 TGAGGGACTAATGTGTTTGTGAG 58.359 43.478 0.00 0.00 41.55 3.51
356 357 5.048846 AGTTGAGGGACTAATGTGTTTGT 57.951 39.130 0.00 0.00 41.55 2.83
358 359 5.805728 CCTAGTTGAGGGACTAATGTGTTT 58.194 41.667 0.00 0.00 41.55 2.83
372 373 7.275123 GGAGTATTAACGACAAACCTAGTTGAG 59.725 40.741 0.40 0.00 32.59 3.02
373 374 7.092716 GGAGTATTAACGACAAACCTAGTTGA 58.907 38.462 0.40 0.00 32.59 3.18
374 375 6.869913 TGGAGTATTAACGACAAACCTAGTTG 59.130 38.462 0.00 0.00 34.52 3.16
376 377 6.594788 TGGAGTATTAACGACAAACCTAGT 57.405 37.500 0.00 0.00 0.00 2.57
378 379 7.173047 GGTTTTGGAGTATTAACGACAAACCTA 59.827 37.037 0.00 0.00 36.51 3.08
379 380 6.016860 GGTTTTGGAGTATTAACGACAAACCT 60.017 38.462 0.00 0.00 36.51 3.50
380 381 6.144854 GGTTTTGGAGTATTAACGACAAACC 58.855 40.000 0.00 0.00 36.51 3.27
381 382 6.727215 TGGTTTTGGAGTATTAACGACAAAC 58.273 36.000 0.00 0.00 36.51 2.93
382 383 6.939132 TGGTTTTGGAGTATTAACGACAAA 57.061 33.333 0.00 0.00 35.64 2.83
383 384 6.543100 AGTTGGTTTTGGAGTATTAACGACAA 59.457 34.615 0.00 0.00 0.00 3.18
384 385 6.056884 AGTTGGTTTTGGAGTATTAACGACA 58.943 36.000 0.00 0.00 0.00 4.35
386 387 6.875195 CCTAGTTGGTTTTGGAGTATTAACGA 59.125 38.462 0.00 0.00 0.00 3.85
387 388 7.068692 CCTAGTTGGTTTTGGAGTATTAACG 57.931 40.000 0.00 0.00 0.00 3.18
404 405 3.815809 TGTTGAGGGACAAACCTAGTTG 58.184 45.455 0.00 0.00 42.10 3.16
405 406 4.461198 CTTGTTGAGGGACAAACCTAGTT 58.539 43.478 0.00 0.00 42.10 2.24
406 407 3.181443 CCTTGTTGAGGGACAAACCTAGT 60.181 47.826 0.00 0.00 42.10 2.57
408 409 3.502123 CCTTGTTGAGGGACAAACCTA 57.498 47.619 0.00 0.00 42.10 3.08
409 410 2.364972 CCTTGTTGAGGGACAAACCT 57.635 50.000 0.00 0.00 45.57 3.50
419 420 7.698836 ATTGAAATCGAAAAACCTTGTTGAG 57.301 32.000 0.00 0.00 0.00 3.02
420 421 7.547370 ACAATTGAAATCGAAAAACCTTGTTGA 59.453 29.630 13.59 0.00 0.00 3.18
421 422 7.683746 ACAATTGAAATCGAAAAACCTTGTTG 58.316 30.769 13.59 0.00 0.00 3.33
423 424 8.194769 ACTACAATTGAAATCGAAAAACCTTGT 58.805 29.630 13.59 0.00 0.00 3.16
424 425 8.574196 ACTACAATTGAAATCGAAAAACCTTG 57.426 30.769 13.59 0.00 0.00 3.61
425 426 9.594478 AAACTACAATTGAAATCGAAAAACCTT 57.406 25.926 13.59 0.00 0.00 3.50
426 427 9.030301 CAAACTACAATTGAAATCGAAAAACCT 57.970 29.630 13.59 0.00 0.00 3.50
431 432 9.743057 ACAATCAAACTACAATTGAAATCGAAA 57.257 25.926 13.59 0.00 39.98 3.46
433 434 8.020819 GGACAATCAAACTACAATTGAAATCGA 58.979 33.333 13.59 1.77 39.98 3.59
434 435 7.273381 GGGACAATCAAACTACAATTGAAATCG 59.727 37.037 13.59 0.00 39.98 3.34
436 437 7.090173 CGGGACAATCAAACTACAATTGAAAT 58.910 34.615 13.59 0.00 39.98 2.17
437 438 6.039941 ACGGGACAATCAAACTACAATTGAAA 59.960 34.615 13.59 0.00 39.98 2.69
439 440 5.067273 ACGGGACAATCAAACTACAATTGA 58.933 37.500 13.59 0.00 40.76 2.57
440 441 5.371115 ACGGGACAATCAAACTACAATTG 57.629 39.130 3.24 3.24 36.64 2.32
442 443 5.278758 CCAAACGGGACAATCAAACTACAAT 60.279 40.000 0.00 0.00 40.01 2.71
443 444 4.036971 CCAAACGGGACAATCAAACTACAA 59.963 41.667 0.00 0.00 40.01 2.41
446 447 3.566322 CACCAAACGGGACAATCAAACTA 59.434 43.478 0.00 0.00 41.15 2.24
449 450 1.683917 CCACCAAACGGGACAATCAAA 59.316 47.619 0.00 0.00 41.15 2.69
450 451 1.323412 CCACCAAACGGGACAATCAA 58.677 50.000 0.00 0.00 41.15 2.57
451 452 1.175983 GCCACCAAACGGGACAATCA 61.176 55.000 0.00 0.00 41.15 2.57
452 453 0.893727 AGCCACCAAACGGGACAATC 60.894 55.000 0.00 0.00 41.15 2.67
454 455 1.527380 GAGCCACCAAACGGGACAA 60.527 57.895 0.00 0.00 41.15 3.18
455 456 2.112297 GAGCCACCAAACGGGACA 59.888 61.111 0.00 0.00 41.15 4.02
456 457 2.999739 TTCGAGCCACCAAACGGGAC 63.000 60.000 0.00 0.00 41.15 4.46
457 458 2.326773 TTTCGAGCCACCAAACGGGA 62.327 55.000 0.00 0.00 41.15 5.14
459 460 1.164041 ACTTTCGAGCCACCAAACGG 61.164 55.000 0.00 0.00 0.00 4.44
461 462 0.317854 GCACTTTCGAGCCACCAAAC 60.318 55.000 0.00 0.00 0.00 2.93
462 463 2.029743 GCACTTTCGAGCCACCAAA 58.970 52.632 0.00 0.00 0.00 3.28
463 464 3.744559 GCACTTTCGAGCCACCAA 58.255 55.556 0.00 0.00 0.00 3.67
470 471 2.084610 TGTGATCAGGCACTTTCGAG 57.915 50.000 0.00 0.00 39.49 4.04
471 472 2.542020 TTGTGATCAGGCACTTTCGA 57.458 45.000 0.00 0.00 39.49 3.71
474 475 2.827921 GGGATTTGTGATCAGGCACTTT 59.172 45.455 0.00 0.00 39.49 2.66
475 476 2.042162 AGGGATTTGTGATCAGGCACTT 59.958 45.455 0.00 0.00 39.49 3.16
476 477 1.637553 AGGGATTTGTGATCAGGCACT 59.362 47.619 0.00 0.00 39.49 4.40
477 478 2.019984 GAGGGATTTGTGATCAGGCAC 58.980 52.381 0.00 0.00 39.22 5.01
478 479 1.634973 TGAGGGATTTGTGATCAGGCA 59.365 47.619 0.00 0.00 0.00 4.75
479 480 2.425143 TGAGGGATTTGTGATCAGGC 57.575 50.000 0.00 0.00 0.00 4.85
480 481 3.635373 CCAATGAGGGATTTGTGATCAGG 59.365 47.826 0.00 0.00 0.00 3.86
481 482 4.275810 ACCAATGAGGGATTTGTGATCAG 58.724 43.478 0.00 0.00 43.89 2.90
483 484 4.201950 CGAACCAATGAGGGATTTGTGATC 60.202 45.833 0.00 0.00 43.89 2.92
484 485 3.696051 CGAACCAATGAGGGATTTGTGAT 59.304 43.478 0.00 0.00 43.89 3.06
485 486 3.081061 CGAACCAATGAGGGATTTGTGA 58.919 45.455 0.00 0.00 43.89 3.58
486 487 3.081061 TCGAACCAATGAGGGATTTGTG 58.919 45.455 0.00 0.00 43.89 3.33
487 488 3.081804 GTCGAACCAATGAGGGATTTGT 58.918 45.455 0.00 0.00 43.89 2.83
490 491 2.356125 CCTGTCGAACCAATGAGGGATT 60.356 50.000 0.00 0.00 43.89 3.01
491 492 1.210478 CCTGTCGAACCAATGAGGGAT 59.790 52.381 0.00 0.00 43.89 3.85
492 493 0.613260 CCTGTCGAACCAATGAGGGA 59.387 55.000 0.00 0.00 43.89 4.20
494 495 0.321564 TGCCTGTCGAACCAATGAGG 60.322 55.000 0.00 0.00 45.67 3.86
495 496 0.798776 GTGCCTGTCGAACCAATGAG 59.201 55.000 0.00 0.00 0.00 2.90
496 497 0.605319 GGTGCCTGTCGAACCAATGA 60.605 55.000 0.00 0.00 33.94 2.57
497 498 1.875963 GGTGCCTGTCGAACCAATG 59.124 57.895 0.00 0.00 33.94 2.82
498 499 1.671054 CGGTGCCTGTCGAACCAAT 60.671 57.895 4.22 0.00 33.30 3.16
499 500 2.107041 ATCGGTGCCTGTCGAACCAA 62.107 55.000 4.22 0.00 38.92 3.67
500 501 2.107041 AATCGGTGCCTGTCGAACCA 62.107 55.000 4.22 0.00 38.92 3.67
501 502 1.359459 GAATCGGTGCCTGTCGAACC 61.359 60.000 0.00 0.00 38.92 3.62
503 504 1.079405 GGAATCGGTGCCTGTCGAA 60.079 57.895 0.00 0.00 38.92 3.71
504 505 2.577059 GGAATCGGTGCCTGTCGA 59.423 61.111 0.00 0.00 39.79 4.20
505 506 2.511600 GGGAATCGGTGCCTGTCG 60.512 66.667 0.00 0.00 34.08 4.35
506 507 0.394352 AATGGGAATCGGTGCCTGTC 60.394 55.000 0.00 0.00 38.91 3.51
507 508 0.039618 AAATGGGAATCGGTGCCTGT 59.960 50.000 0.00 0.00 38.91 4.00
509 510 1.005924 AGAAAATGGGAATCGGTGCCT 59.994 47.619 0.00 0.00 38.91 4.75
510 511 1.405463 GAGAAAATGGGAATCGGTGCC 59.595 52.381 0.00 0.00 38.51 5.01
512 513 2.722094 TGGAGAAAATGGGAATCGGTG 58.278 47.619 0.00 0.00 0.00 4.94
513 514 3.290710 CATGGAGAAAATGGGAATCGGT 58.709 45.455 0.00 0.00 0.00 4.69
515 516 3.554934 TCCATGGAGAAAATGGGAATCG 58.445 45.455 11.44 0.00 44.10 3.34
517 518 4.033009 GGTTCCATGGAGAAAATGGGAAT 58.967 43.478 15.53 0.00 44.10 3.01
518 519 3.181413 TGGTTCCATGGAGAAAATGGGAA 60.181 43.478 15.53 0.00 44.10 3.97
523 524 3.181418 ACTGGTGGTTCCATGGAGAAAAT 60.181 43.478 15.53 0.00 46.12 1.82
524 525 2.176798 ACTGGTGGTTCCATGGAGAAAA 59.823 45.455 15.53 0.00 46.12 2.29
532 533 1.073923 GAACTGGACTGGTGGTTCCAT 59.926 52.381 0.00 0.00 46.12 3.41
534 535 0.602905 CGAACTGGACTGGTGGTTCC 60.603 60.000 0.00 0.00 35.90 3.62
549 550 8.736751 TTGGAGCATAGTTTAAAAATTCGAAC 57.263 30.769 0.00 0.00 0.00 3.95
550 551 9.567848 GATTGGAGCATAGTTTAAAAATTCGAA 57.432 29.630 0.00 0.00 0.00 3.71
553 554 9.651913 TTGGATTGGAGCATAGTTTAAAAATTC 57.348 29.630 0.00 0.00 0.00 2.17
556 557 8.189119 AGTTGGATTGGAGCATAGTTTAAAAA 57.811 30.769 0.00 0.00 0.00 1.94
571 572 3.338249 CATCGGGCTATAGTTGGATTGG 58.662 50.000 0.84 0.00 0.00 3.16
586 587 1.542547 GCACCAGGTTATACCATCGGG 60.543 57.143 0.00 0.00 41.95 5.14
608 609 4.582240 GGAATTGGAGTCTGATTCAATCCC 59.418 45.833 15.83 1.51 32.72 3.85
609 610 4.274459 CGGAATTGGAGTCTGATTCAATCC 59.726 45.833 15.83 5.63 32.72 3.01
610 611 5.118990 TCGGAATTGGAGTCTGATTCAATC 58.881 41.667 15.83 0.00 32.72 2.67
619 620 1.627297 GGGCCTCGGAATTGGAGTCT 61.627 60.000 0.84 0.00 0.00 3.24
624 625 2.364972 ATTTAGGGCCTCGGAATTGG 57.635 50.000 10.74 0.00 0.00 3.16
629 630 5.045724 TGTTAAGTTTATTTAGGGCCTCGGA 60.046 40.000 10.74 0.00 0.00 4.55
660 663 7.165812 GCATTGTATTGGCGTTCAAAATACTAG 59.834 37.037 0.00 0.00 39.05 2.57
662 665 5.804979 GCATTGTATTGGCGTTCAAAATACT 59.195 36.000 0.00 0.00 39.05 2.12
681 684 9.831737 GCACTTAAGATAACTATAATGGCATTG 57.168 33.333 22.57 8.65 0.00 2.82
716 719 7.506599 TGCATATGTTCTATGGATTTGGTGATT 59.493 33.333 4.29 0.00 0.00 2.57
719 722 6.638096 TGCATATGTTCTATGGATTTGGTG 57.362 37.500 4.29 0.00 0.00 4.17
720 723 7.658525 TTTGCATATGTTCTATGGATTTGGT 57.341 32.000 4.29 0.00 0.00 3.67
721 724 8.984764 CATTTTGCATATGTTCTATGGATTTGG 58.015 33.333 4.29 0.00 0.00 3.28
722 725 9.752961 TCATTTTGCATATGTTCTATGGATTTG 57.247 29.630 4.29 0.00 0.00 2.32
727 730 9.976511 AAATCTCATTTTGCATATGTTCTATGG 57.023 29.630 4.29 0.33 0.00 2.74
759 775 2.680339 GTTCTAGCAACAGAATCCTGCC 59.320 50.000 0.00 0.00 44.16 4.85
762 778 4.899352 AGTGTTCTAGCAACAGAATCCT 57.101 40.909 7.68 0.95 36.93 3.24
766 782 7.173218 CCATTTTCTAGTGTTCTAGCAACAGAA 59.827 37.037 7.68 6.25 42.28 3.02
768 784 6.428159 ACCATTTTCTAGTGTTCTAGCAACAG 59.572 38.462 7.68 0.00 42.28 3.16
771 787 6.877322 GGTACCATTTTCTAGTGTTCTAGCAA 59.123 38.462 7.15 0.00 42.28 3.91
773 789 6.403878 TGGTACCATTTTCTAGTGTTCTAGC 58.596 40.000 11.60 0.00 42.28 3.42
780 796 6.936279 TCTCTCTTGGTACCATTTTCTAGTG 58.064 40.000 17.17 9.86 0.00 2.74
781 797 7.365117 CCATCTCTCTTGGTACCATTTTCTAGT 60.365 40.741 17.17 0.00 0.00 2.57
782 798 6.989169 CCATCTCTCTTGGTACCATTTTCTAG 59.011 42.308 17.17 9.14 0.00 2.43
783 799 6.672218 TCCATCTCTCTTGGTACCATTTTCTA 59.328 38.462 17.17 0.00 35.64 2.10
784 800 5.488919 TCCATCTCTCTTGGTACCATTTTCT 59.511 40.000 17.17 0.00 35.64 2.52
786 802 5.488919 TCTCCATCTCTCTTGGTACCATTTT 59.511 40.000 17.17 0.00 35.64 1.82
788 804 4.407296 GTCTCCATCTCTCTTGGTACCATT 59.593 45.833 17.17 0.00 35.64 3.16
790 806 3.245622 TGTCTCCATCTCTCTTGGTACCA 60.246 47.826 11.60 11.60 35.64 3.25
791 807 3.366396 TGTCTCCATCTCTCTTGGTACC 58.634 50.000 4.43 4.43 35.64 3.34
792 808 4.382147 GGTTGTCTCCATCTCTCTTGGTAC 60.382 50.000 0.00 0.00 35.64 3.34
793 809 3.769844 GGTTGTCTCCATCTCTCTTGGTA 59.230 47.826 0.00 0.00 35.64 3.25
794 810 2.569404 GGTTGTCTCCATCTCTCTTGGT 59.431 50.000 0.00 0.00 35.64 3.67
795 811 2.093235 GGGTTGTCTCCATCTCTCTTGG 60.093 54.545 0.00 0.00 35.45 3.61
796 812 2.568956 TGGGTTGTCTCCATCTCTCTTG 59.431 50.000 0.00 0.00 0.00 3.02
797 813 2.907892 TGGGTTGTCTCCATCTCTCTT 58.092 47.619 0.00 0.00 0.00 2.85
798 814 2.569404 GTTGGGTTGTCTCCATCTCTCT 59.431 50.000 0.00 0.00 33.82 3.10
799 815 2.675317 CGTTGGGTTGTCTCCATCTCTC 60.675 54.545 0.00 0.00 33.82 3.20
865 2800 0.256464 GAAGAGGAGAGGACGAGGGA 59.744 60.000 0.00 0.00 0.00 4.20
877 2812 0.174389 GCTGCGATGAGTGAAGAGGA 59.826 55.000 0.00 0.00 0.00 3.71
878 2813 0.809241 GGCTGCGATGAGTGAAGAGG 60.809 60.000 0.00 0.00 0.00 3.69
906 2841 4.290622 CCTGCTTGGTGGTGGCCT 62.291 66.667 3.32 0.00 0.00 5.19
1063 3012 4.816984 GAGGTCGGAGGAGGGCGA 62.817 72.222 0.00 0.00 0.00 5.54
1227 3176 2.612115 AGGTTCCCCTGGCAGGAG 60.612 66.667 34.84 23.05 40.58 3.69
1260 3209 4.988598 AGCGGGTGCACGTCCTTG 62.989 66.667 11.45 0.00 46.23 3.61
1504 3453 6.238211 CCAGTTCAATGCGTAAGAATAGGAAG 60.238 42.308 8.05 0.00 30.70 3.46
1508 3457 6.851222 ATCCAGTTCAATGCGTAAGAATAG 57.149 37.500 0.00 0.00 30.70 1.73
1517 3469 3.244976 GTCCAAAATCCAGTTCAATGCG 58.755 45.455 0.00 0.00 0.00 4.73
1526 3478 2.594529 CGACAACGTCCAAAATCCAG 57.405 50.000 0.00 0.00 34.56 3.86
1598 3550 1.812571 AGCAAAAACTACATCTGCGGG 59.187 47.619 0.00 0.00 38.07 6.13
1612 3564 4.985538 AGGGTGAGTAGAAATGAGCAAAA 58.014 39.130 0.00 0.00 0.00 2.44
1724 3676 6.114187 TGGATACTGGCATTACTATCAAGG 57.886 41.667 0.00 0.00 37.61 3.61
1764 3716 3.076079 TCGGAAATTCCAAAGGGGTAC 57.924 47.619 13.04 0.00 35.91 3.34
1789 3741 7.693969 AAAGGAGATACAAAAAGACATCCTG 57.306 36.000 0.00 0.00 36.10 3.86
1809 3761 8.686334 AGATAAACAGCATACCAATACAAAAGG 58.314 33.333 0.00 0.00 0.00 3.11
1838 3791 5.798125 TTGATTAGGTGGCACAAATGAAA 57.202 34.783 20.82 11.41 44.16 2.69
1905 3858 4.259356 ACTAACTAAAATTCTCACCGGGC 58.741 43.478 6.32 0.00 0.00 6.13
1967 3922 8.297470 AGTTCATAATACATCAAGCAACCAAT 57.703 30.769 0.00 0.00 0.00 3.16
2003 3958 2.290367 CAGAAAACTGCATCACGAACCA 59.710 45.455 0.00 0.00 0.00 3.67
2009 3964 7.698836 AAAACATAACAGAAAACTGCATCAC 57.301 32.000 0.00 0.00 0.00 3.06
2040 3995 5.575218 GCTTCCCATTAACACCGTAAAATTG 59.425 40.000 0.00 0.00 0.00 2.32
2041 3996 5.244178 TGCTTCCCATTAACACCGTAAAATT 59.756 36.000 0.00 0.00 0.00 1.82
2042 3997 4.767928 TGCTTCCCATTAACACCGTAAAAT 59.232 37.500 0.00 0.00 0.00 1.82
2049 4004 5.914898 AACTAATGCTTCCCATTAACACC 57.085 39.130 0.00 0.00 43.76 4.16
2080 4035 1.544093 CCAGCATCCATCCATTAGCGT 60.544 52.381 0.00 0.00 0.00 5.07
2105 4060 7.155328 ACTATAGTAACATATCACAGCCAAGC 58.845 38.462 2.75 0.00 0.00 4.01
2130 4085 6.954102 TCAAGCCATAACTGCCTCTATCTATA 59.046 38.462 0.00 0.00 0.00 1.31
2131 4086 5.782331 TCAAGCCATAACTGCCTCTATCTAT 59.218 40.000 0.00 0.00 0.00 1.98
2132 4087 5.147767 TCAAGCCATAACTGCCTCTATCTA 58.852 41.667 0.00 0.00 0.00 1.98
2133 4088 3.969976 TCAAGCCATAACTGCCTCTATCT 59.030 43.478 0.00 0.00 0.00 1.98
2134 4089 4.342862 TCAAGCCATAACTGCCTCTATC 57.657 45.455 0.00 0.00 0.00 2.08
2205 4160 6.319715 ACAAAACAAAGTATAGAACCCCCAT 58.680 36.000 0.00 0.00 0.00 4.00
2281 4236 5.138125 ACACCAATATCCAAACAAGCAAG 57.862 39.130 0.00 0.00 0.00 4.01
2793 4748 4.998033 GGAAGTCCAGGTTTCAACTTAGAG 59.002 45.833 8.21 0.00 32.34 2.43
2946 4901 0.693049 AGTTCTCTGCCCGGAATGTT 59.307 50.000 0.73 0.00 0.00 2.71
3062 5017 5.372373 AGATAGATAAGCCAAGCCAGAAAC 58.628 41.667 0.00 0.00 0.00 2.78
3428 5413 8.575649 AAACAAGGGTAAATAACTGATACCAG 57.424 34.615 3.84 0.00 45.76 4.00
3664 5649 6.558009 TCATCATTGCAAGACTATTGCTTTC 58.442 36.000 4.94 0.00 45.13 2.62
3690 5675 9.480053 AAGATACAAAAATTGAACTGTGGAATG 57.520 29.630 0.00 0.00 0.00 2.67
3755 5743 6.183360 GGCATGAATCAGTACTGAACCTACTA 60.183 42.308 28.43 11.64 43.58 1.82
3756 5744 5.395768 GGCATGAATCAGTACTGAACCTACT 60.396 44.000 28.43 9.10 43.58 2.57
3788 5878 7.925993 TCAAAAAGTAAGTGACCACAACTATG 58.074 34.615 2.78 6.40 32.06 2.23
3798 5888 9.486857 GAAAACAGTACTCAAAAAGTAAGTGAC 57.513 33.333 0.00 0.00 42.11 3.67
3819 5909 7.248437 CGATTAATTCACCAACCTAGGAAAAC 58.752 38.462 17.98 0.00 0.00 2.43
3893 5983 5.063880 AGTCCACAGTCAAATTTAGGTGAC 58.936 41.667 10.48 6.20 43.70 3.67
4055 6148 5.500645 AACAAACAACTCAGGTAGAAAGC 57.499 39.130 0.00 0.00 0.00 3.51
4132 6350 8.082852 ACAGTGTTTAACAGTATCAGACACTAG 58.917 37.037 5.01 0.00 42.90 2.57
4150 6368 2.223479 GCGTCAATCCACAACAGTGTTT 60.223 45.455 5.57 0.00 35.07 2.83
4174 6392 5.410746 GCCACTACTATCATCATCATGTTGG 59.589 44.000 3.98 0.00 0.00 3.77
4196 6414 0.387929 CTGCATGTTGGGATGATGCC 59.612 55.000 0.00 0.00 41.54 4.40
4314 6585 6.698766 GTCAAGAACATGAGAATGCAAGTTTT 59.301 34.615 0.00 0.00 30.74 2.43
4410 6682 2.380084 ACAAGATGTTACGCGGTCAT 57.620 45.000 12.47 11.83 0.00 3.06
4415 6687 5.516996 TCCTATAGAACAAGATGTTACGCG 58.483 41.667 3.53 3.53 41.28 6.01
4449 6721 1.433121 ATGGCTCCAGAGGAAGATCC 58.567 55.000 0.00 0.00 36.58 3.36
4467 6739 3.577919 GAGGTCCAGGTACCACTCATAT 58.422 50.000 15.94 0.00 42.40 1.78
4527 6799 1.219213 AGGATCATCCTCTCGAACCCT 59.781 52.381 0.00 0.00 45.66 4.34
4633 6905 5.593010 ACGTTCTTATATCTCAAGGCAGAC 58.407 41.667 0.00 0.00 0.00 3.51
4684 6957 1.597027 CGGACGGCCAACACTTCTT 60.597 57.895 8.76 0.00 0.00 2.52
4806 7079 6.537301 TGCTAAGGACCAATAATACTTCAACG 59.463 38.462 0.00 0.00 0.00 4.10
4807 7080 7.859325 TGCTAAGGACCAATAATACTTCAAC 57.141 36.000 0.00 0.00 0.00 3.18
4872 7147 3.061831 CAGCTCGAAGTTTGCAGACATAG 59.938 47.826 10.36 0.00 0.00 2.23
4877 7152 1.953559 AACAGCTCGAAGTTTGCAGA 58.046 45.000 0.00 0.00 0.00 4.26
4879 7154 2.421775 TCAAAACAGCTCGAAGTTTGCA 59.578 40.909 10.02 0.00 37.94 4.08
4891 7167 4.574599 ACCAAGACATCTTCAAAACAGC 57.425 40.909 0.00 0.00 33.11 4.40
4906 7182 4.750833 TTTTTCCCCCATCTAACCAAGA 57.249 40.909 0.00 0.00 39.02 3.02
4910 7186 6.860790 TTAACATTTTTCCCCCATCTAACC 57.139 37.500 0.00 0.00 0.00 2.85
4915 7191 6.374053 CACCAATTTAACATTTTTCCCCCATC 59.626 38.462 0.00 0.00 0.00 3.51
4920 7196 6.203915 GGTGACACCAATTTAACATTTTTCCC 59.796 38.462 20.14 0.00 38.42 3.97
4923 7199 8.043710 TCAAGGTGACACCAATTTAACATTTTT 58.956 29.630 26.30 4.34 41.95 1.94
4926 7202 6.512297 GTCAAGGTGACACCAATTTAACATT 58.488 36.000 26.30 5.80 46.22 2.71
4948 7224 2.215942 ACTTTGGGCTATTGTGGGTC 57.784 50.000 0.00 0.00 0.00 4.46
4949 7225 2.158385 TGAACTTTGGGCTATTGTGGGT 60.158 45.455 0.00 0.00 0.00 4.51
4972 7248 4.167307 TGACTTTAAGAAAGGAACTGGGGT 59.833 41.667 0.00 0.00 42.82 4.95
4997 7273 8.788806 ACATCGTTTGGAACATGTTTTCTTATA 58.211 29.630 13.36 0.00 39.30 0.98
4998 7274 7.657336 ACATCGTTTGGAACATGTTTTCTTAT 58.343 30.769 13.36 0.00 39.30 1.73
5026 7302 9.089601 CGTTTTTCCAGTAAACAAATTAAACCT 57.910 29.630 0.00 0.00 35.69 3.50
5027 7303 9.085250 TCGTTTTTCCAGTAAACAAATTAAACC 57.915 29.630 0.00 0.00 35.69 3.27
5032 7308 8.934507 TTCATCGTTTTTCCAGTAAACAAATT 57.065 26.923 0.00 0.00 35.69 1.82
5033 7309 8.934507 TTTCATCGTTTTTCCAGTAAACAAAT 57.065 26.923 0.00 0.00 35.69 2.32
5034 7310 8.758633 TTTTCATCGTTTTTCCAGTAAACAAA 57.241 26.923 0.00 0.00 35.69 2.83
5035 7311 8.758633 TTTTTCATCGTTTTTCCAGTAAACAA 57.241 26.923 0.00 0.00 35.69 2.83
5051 7327 1.606606 GCCGAGCAACTTTTTCATCG 58.393 50.000 0.00 0.00 0.00 3.84
5145 7421 2.951745 GAGCTGACCGACGATGCG 60.952 66.667 0.00 0.00 0.00 4.73
5184 7460 0.331954 TTGGTTTAATAGGCGGGCCA 59.668 50.000 12.97 0.00 38.92 5.36
5189 7465 1.329599 GCGGAGTTGGTTTAATAGGCG 59.670 52.381 0.00 0.00 0.00 5.52
5197 7473 2.561478 ACACATAGCGGAGTTGGTTT 57.439 45.000 0.00 0.00 0.00 3.27
5278 7554 0.039437 CCTTGCTTTGCTCTGCTGTG 60.039 55.000 0.00 0.00 0.00 3.66
5280 7557 0.039437 CACCTTGCTTTGCTCTGCTG 60.039 55.000 0.00 0.00 0.00 4.41
5508 7789 2.671896 AGAGGATGATGGAAATGGGC 57.328 50.000 0.00 0.00 0.00 5.36
5513 7794 6.146047 TCCTGAGAATAGAGGATGATGGAAA 58.854 40.000 0.00 0.00 33.18 3.13
5528 7809 3.970842 ACTCGTTCCTACTCCTGAGAAT 58.029 45.455 0.22 0.00 0.00 2.40
5534 7815 6.662663 ACTGTTAATAACTCGTTCCTACTCCT 59.337 38.462 4.67 0.00 0.00 3.69
5539 7820 7.692460 TCAGACTGTTAATAACTCGTTCCTA 57.308 36.000 1.59 0.00 0.00 2.94
5558 7858 0.179215 CTGCGTGCGGAATTTCAGAC 60.179 55.000 0.40 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.