Multiple sequence alignment - TraesCS1A01G102400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G102400 chr1A 100.000 8764 0 0 1 8764 98583808 98592571 0.000000e+00 16185.0
1 TraesCS1A01G102400 chr1A 87.659 786 45 30 7054 7798 98515365 98516139 0.000000e+00 867.0
2 TraesCS1A01G102400 chr1A 82.119 302 31 11 1991 2278 14133884 14133592 4.090000e-58 237.0
3 TraesCS1A01G102400 chr1B 88.955 2010 169 26 3801 5794 131460456 131462428 0.000000e+00 2433.0
4 TraesCS1A01G102400 chr1B 89.217 1558 115 24 6471 7991 131783730 131785271 0.000000e+00 1897.0
5 TraesCS1A01G102400 chr1B 90.980 1419 101 12 5792 7199 131462474 131463876 0.000000e+00 1886.0
6 TraesCS1A01G102400 chr1B 85.274 1460 134 35 2387 3800 131777425 131778849 0.000000e+00 1430.0
7 TraesCS1A01G102400 chr1B 89.039 1186 68 30 7 1162 131774633 131775786 0.000000e+00 1413.0
8 TraesCS1A01G102400 chr1B 85.448 1182 89 40 1210 2356 131775862 131776995 0.000000e+00 1153.0
9 TraesCS1A01G102400 chr1B 88.342 935 44 18 1 922 131455790 131456672 0.000000e+00 1062.0
10 TraesCS1A01G102400 chr1B 86.516 927 109 13 3961 4883 131781298 131782212 0.000000e+00 1005.0
11 TraesCS1A01G102400 chr1B 84.457 1023 99 26 2387 3380 131458827 131459818 0.000000e+00 953.0
12 TraesCS1A01G102400 chr1B 90.588 680 46 6 5792 6468 131783015 131783679 0.000000e+00 885.0
13 TraesCS1A01G102400 chr1B 95.943 419 8 3 1210 1628 131457177 131457586 0.000000e+00 671.0
14 TraesCS1A01G102400 chr1B 93.151 438 21 2 7233 7661 131463878 131464315 1.240000e-177 634.0
15 TraesCS1A01G102400 chr1B 92.252 413 25 2 5378 5790 131782540 131782945 5.900000e-161 579.0
16 TraesCS1A01G102400 chr1B 90.504 337 30 2 1 336 130665919 130666254 2.250000e-120 444.0
17 TraesCS1A01G102400 chr1B 87.879 297 24 6 7650 7946 131480163 131480447 1.090000e-88 339.0
18 TraesCS1A01G102400 chr1B 87.550 249 18 11 914 1162 131456865 131457100 8.670000e-70 276.0
19 TraesCS1A01G102400 chr1D 89.430 1561 139 10 3801 5353 79940786 79942328 0.000000e+00 1945.0
20 TraesCS1A01G102400 chr1D 88.946 1565 155 10 3801 5353 79810794 79812352 0.000000e+00 1916.0
21 TraesCS1A01G102400 chr1D 90.429 1421 111 7 5792 7201 79813026 79814432 0.000000e+00 1847.0
22 TraesCS1A01G102400 chr1D 89.362 1504 92 31 6470 7925 79943667 79945150 0.000000e+00 1829.0
23 TraesCS1A01G102400 chr1D 88.523 1429 117 21 2386 3800 79939352 79940747 0.000000e+00 1687.0
24 TraesCS1A01G102400 chr1D 92.079 1111 73 7 5363 6468 79942517 79943617 0.000000e+00 1550.0
25 TraesCS1A01G102400 chr1D 85.857 1004 110 16 2801 3790 79809760 79810745 0.000000e+00 1038.0
26 TraesCS1A01G102400 chr1D 91.053 693 38 8 7221 7898 79814543 79815226 0.000000e+00 915.0
27 TraesCS1A01G102400 chr1D 94.605 519 14 5 1210 1723 79937749 79938258 0.000000e+00 791.0
28 TraesCS1A01G102400 chr1D 87.830 682 37 20 1 665 79757396 79758048 0.000000e+00 758.0
29 TraesCS1A01G102400 chr1D 82.994 835 72 34 1583 2384 79803011 79803808 0.000000e+00 691.0
30 TraesCS1A01G102400 chr1D 89.960 498 21 7 205 688 79936376 79936858 4.500000e-172 616.0
31 TraesCS1A01G102400 chr1D 95.068 365 14 1 1212 1576 79802227 79802587 9.870000e-159 571.0
32 TraesCS1A01G102400 chr1D 90.698 430 25 3 5363 5792 79812549 79812963 7.680000e-155 558.0
33 TraesCS1A01G102400 chr1D 81.579 646 73 32 1762 2388 79938258 79938876 7.910000e-135 492.0
34 TraesCS1A01G102400 chr1D 93.189 323 11 7 791 1103 79798850 79799171 1.720000e-126 464.0
35 TraesCS1A01G102400 chr1D 89.266 354 26 4 2405 2753 79804292 79804638 4.860000e-117 433.0
36 TraesCS1A01G102400 chr1D 92.697 178 5 6 656 826 79936878 79937054 5.250000e-62 250.0
37 TraesCS1A01G102400 chr1D 87.681 138 9 5 1063 1200 79937568 79937697 4.240000e-33 154.0
38 TraesCS1A01G102400 chr1D 97.183 71 2 0 725 795 79781319 79781389 4.300000e-23 121.0
39 TraesCS1A01G102400 chr1D 100.000 29 0 0 152 180 79936198 79936226 4.000000e-03 54.7
40 TraesCS1A01G102400 chr7A 98.060 773 15 0 7992 8764 287501242 287502014 0.000000e+00 1345.0
41 TraesCS1A01G102400 chr7A 95.579 769 32 1 7994 8760 716399046 716399814 0.000000e+00 1230.0
42 TraesCS1A01G102400 chr7A 81.155 329 46 9 1950 2272 303971697 303972015 5.250000e-62 250.0
43 TraesCS1A01G102400 chr6A 98.060 773 15 0 7992 8764 420952262 420953034 0.000000e+00 1345.0
44 TraesCS1A01G102400 chr6A 97.798 772 13 1 7997 8764 186999838 187000609 0.000000e+00 1328.0
45 TraesCS1A01G102400 chr6A 97.781 766 17 0 7999 8764 579110422 579109657 0.000000e+00 1321.0
46 TraesCS1A01G102400 chr3A 97.266 768 19 2 7997 8764 46013599 46014364 0.000000e+00 1301.0
47 TraesCS1A01G102400 chr4B 95.232 776 35 2 7990 8764 58033908 58034682 0.000000e+00 1227.0
48 TraesCS1A01G102400 chr4A 96.608 737 25 0 8028 8764 50419617 50418881 0.000000e+00 1223.0
49 TraesCS1A01G102400 chr4A 80.531 339 49 14 1947 2274 36794274 36794606 2.440000e-60 244.0
50 TraesCS1A01G102400 chr5B 93.920 773 43 4 7993 8764 62948502 62947733 0.000000e+00 1164.0
51 TraesCS1A01G102400 chr6B 79.048 420 57 19 1867 2276 712544727 712545125 8.730000e-65 259.0
52 TraesCS1A01G102400 chr6B 81.875 320 43 10 1974 2281 558939651 558939335 1.130000e-63 255.0
53 TraesCS1A01G102400 chr3D 79.369 412 52 18 1874 2274 10379532 10379143 8.730000e-65 259.0
54 TraesCS1A01G102400 chr5A 81.212 330 42 12 1949 2273 18847867 18848181 1.890000e-61 248.0
55 TraesCS1A01G102400 chr2A 77.665 197 44 0 5151 5347 516468822 516468626 4.300000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G102400 chr1A 98583808 98592571 8763 False 16185.000000 16185 100.000000 1 8764 1 chr1A.!!$F2 8763
1 TraesCS1A01G102400 chr1A 98515365 98516139 774 False 867.000000 867 87.659000 7054 7798 1 chr1A.!!$F1 744
2 TraesCS1A01G102400 chr1B 131774633 131785271 10638 False 1194.571429 1897 88.333429 7 7991 7 chr1B.!!$F4 7984
3 TraesCS1A01G102400 chr1B 131455790 131464315 8525 False 1130.714286 2433 89.911143 1 7661 7 chr1B.!!$F3 7660
4 TraesCS1A01G102400 chr1D 79809760 79815226 5466 False 1254.800000 1916 89.396600 2801 7898 5 chr1D.!!$F4 5097
5 TraesCS1A01G102400 chr1D 79936198 79945150 8952 False 936.870000 1945 90.591600 152 7925 10 chr1D.!!$F5 7773
6 TraesCS1A01G102400 chr1D 79757396 79758048 652 False 758.000000 758 87.830000 1 665 1 chr1D.!!$F1 664
7 TraesCS1A01G102400 chr1D 79798850 79804638 5788 False 539.750000 691 90.129250 791 2753 4 chr1D.!!$F3 1962
8 TraesCS1A01G102400 chr7A 287501242 287502014 772 False 1345.000000 1345 98.060000 7992 8764 1 chr7A.!!$F1 772
9 TraesCS1A01G102400 chr7A 716399046 716399814 768 False 1230.000000 1230 95.579000 7994 8760 1 chr7A.!!$F3 766
10 TraesCS1A01G102400 chr6A 420952262 420953034 772 False 1345.000000 1345 98.060000 7992 8764 1 chr6A.!!$F2 772
11 TraesCS1A01G102400 chr6A 186999838 187000609 771 False 1328.000000 1328 97.798000 7997 8764 1 chr6A.!!$F1 767
12 TraesCS1A01G102400 chr6A 579109657 579110422 765 True 1321.000000 1321 97.781000 7999 8764 1 chr6A.!!$R1 765
13 TraesCS1A01G102400 chr3A 46013599 46014364 765 False 1301.000000 1301 97.266000 7997 8764 1 chr3A.!!$F1 767
14 TraesCS1A01G102400 chr4B 58033908 58034682 774 False 1227.000000 1227 95.232000 7990 8764 1 chr4B.!!$F1 774
15 TraesCS1A01G102400 chr4A 50418881 50419617 736 True 1223.000000 1223 96.608000 8028 8764 1 chr4A.!!$R1 736
16 TraesCS1A01G102400 chr5B 62947733 62948502 769 True 1164.000000 1164 93.920000 7993 8764 1 chr5B.!!$R1 771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
950 1384 0.252927 CTCTTTCCCCCACCTCTCCT 60.253 60.0 0.00 0.00 0.00 3.69 F
1213 4631 0.107263 TGCTCAACTGAACACTGGCA 60.107 50.0 0.00 0.00 0.00 4.92 F
1878 5799 0.250553 AATCGAGTGGGGCGTTTTGA 60.251 50.0 0.00 0.00 0.00 2.69 F
3313 7882 0.175760 TATGCTCTCCTCGCAACACC 59.824 55.0 0.00 0.00 41.26 4.16 F
4089 11156 0.031857 CGCTTTGCATTGACCACCAA 59.968 50.0 0.00 0.00 39.41 3.67 F
4193 11260 0.169672 CATCGCTTTGACAAGGGCAG 59.830 55.0 13.15 7.76 41.68 4.85 F
5328 12400 0.398318 AAGTGCTCCTGGGTCAACTC 59.602 55.0 0.00 0.00 0.00 3.01 F
6330 13932 1.039856 ACCAAACCAGCCACATTGAC 58.960 50.0 0.00 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1878 5799 0.251077 CCTCCACAAAGGCTGAGCTT 60.251 55.000 3.72 0.00 37.29 3.74 R
2241 6194 1.000521 CAGCTTGGCCTCCATGGAA 60.001 57.895 17.00 0.00 38.35 3.53 R
3433 8198 0.655733 GGCGACCCATATGTTGTTCG 59.344 55.000 1.24 5.24 33.96 3.95 R
4174 11241 0.169672 CTGCCCTTGTCAAAGCGATG 59.830 55.000 0.00 0.00 31.51 3.84 R
5641 13158 0.651031 GCCGACTAACGAATGGCTTC 59.349 55.000 0.00 0.00 45.77 3.86 R
5657 13174 1.349627 CACTGCAGATTAAGCGCCG 59.650 57.895 23.35 2.38 33.85 6.46 R
6348 13950 0.321122 CAGTGGGTGTCTTCCTCTGC 60.321 60.000 0.00 0.00 38.51 4.26 R
7788 15614 1.350351 GGGAGGCTGATGACATATGCT 59.650 52.381 1.58 0.00 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 34 4.488879 GCTAAGAATTTGCTGACCAAAGG 58.511 43.478 0.00 0.00 45.87 3.11
44 48 3.033184 ACCAAAGGCAATACATCCATGG 58.967 45.455 4.97 4.97 37.52 3.66
88 93 7.770801 TTTGATAACTGATCCGTGTATTCAG 57.229 36.000 0.00 0.00 42.05 3.02
107 112 1.349357 AGTTCTGAGAGGGCTTGTTCC 59.651 52.381 0.00 0.00 0.00 3.62
128 133 6.455360 TCCAAGAATCATTTGCTCCATTAC 57.545 37.500 0.00 0.00 0.00 1.89
130 135 5.127519 CCAAGAATCATTTGCTCCATTACCA 59.872 40.000 0.00 0.00 0.00 3.25
201 206 3.057734 GTCTAAACCTGTGACTCCAACG 58.942 50.000 0.00 0.00 0.00 4.10
268 405 1.068474 CAGGTCTAAAGCGTGGTTCG 58.932 55.000 0.00 0.00 43.12 3.95
303 440 5.570234 TGACAACTTTTACCACAAGAACC 57.430 39.130 0.00 0.00 0.00 3.62
337 474 1.789116 CATGGCGCCAATTGCAAAC 59.211 52.632 36.33 0.00 41.33 2.93
338 475 0.949588 CATGGCGCCAATTGCAAACA 60.950 50.000 36.33 5.54 41.33 2.83
339 476 0.671163 ATGGCGCCAATTGCAAACAG 60.671 50.000 36.33 0.00 41.33 3.16
340 477 2.670210 GGCGCCAATTGCAAACAGC 61.670 57.895 24.80 5.51 45.96 4.40
625 780 2.838225 GGCGACCTAGCTAGCCCA 60.838 66.667 15.74 0.00 43.54 5.36
626 781 2.417936 GCGACCTAGCTAGCCCAC 59.582 66.667 15.74 5.16 0.00 4.61
627 782 2.423898 GCGACCTAGCTAGCCCACA 61.424 63.158 15.74 0.00 0.00 4.17
663 818 3.181504 GCCTTACGTCTGAGTCTCTTCTC 60.182 52.174 0.00 0.00 35.28 2.87
667 822 1.480789 GTCTGAGTCTCTTCTCCCCC 58.519 60.000 0.65 0.00 33.93 5.40
731 943 4.385825 TGTGAGATTTCGGTTAGTGCTTT 58.614 39.130 0.00 0.00 0.00 3.51
733 945 3.751175 TGAGATTTCGGTTAGTGCTTTGG 59.249 43.478 0.00 0.00 0.00 3.28
734 946 3.751518 AGATTTCGGTTAGTGCTTTGGT 58.248 40.909 0.00 0.00 0.00 3.67
736 948 1.600023 TTCGGTTAGTGCTTTGGTGG 58.400 50.000 0.00 0.00 0.00 4.61
737 949 0.470766 TCGGTTAGTGCTTTGGTGGT 59.529 50.000 0.00 0.00 0.00 4.16
738 951 1.693062 TCGGTTAGTGCTTTGGTGGTA 59.307 47.619 0.00 0.00 0.00 3.25
739 952 1.802365 CGGTTAGTGCTTTGGTGGTAC 59.198 52.381 0.00 0.00 0.00 3.34
741 954 2.486918 GTTAGTGCTTTGGTGGTACGT 58.513 47.619 0.00 0.00 0.00 3.57
836 1057 5.542813 CAACGAAAATAAGAGAGCGAGAAC 58.457 41.667 0.00 0.00 0.00 3.01
874 1104 3.642778 CTAGTGCCCCACGTGACCG 62.643 68.421 19.30 4.54 39.64 4.79
950 1384 0.252927 CTCTTTCCCCCACCTCTCCT 60.253 60.000 0.00 0.00 0.00 3.69
961 1395 2.654863 CACCTCTCCTTCTCTCTCTCC 58.345 57.143 0.00 0.00 0.00 3.71
972 1416 1.143684 CTCTCTCTCCCCCTCTCTGAG 59.856 61.905 0.00 0.00 0.00 3.35
978 1422 1.994507 CCCCCTCTCTGAGCAAGCT 60.995 63.158 0.00 0.00 0.00 3.74
991 1435 0.806492 GCAAGCTAGTGGTAGGTCGC 60.806 60.000 0.00 0.00 35.89 5.19
1144 4552 1.667724 CTCCATCCTCGCAATGTTCAC 59.332 52.381 0.00 0.00 0.00 3.18
1154 4565 2.408050 GCAATGTTCACGTCTCACTCT 58.592 47.619 0.00 0.00 0.00 3.24
1155 4566 2.802816 GCAATGTTCACGTCTCACTCTT 59.197 45.455 0.00 0.00 0.00 2.85
1156 4567 3.363378 GCAATGTTCACGTCTCACTCTTG 60.363 47.826 0.00 0.00 0.00 3.02
1157 4568 1.852942 TGTTCACGTCTCACTCTTGC 58.147 50.000 0.00 0.00 0.00 4.01
1159 4570 2.224042 TGTTCACGTCTCACTCTTGCAT 60.224 45.455 0.00 0.00 0.00 3.96
1160 4571 3.005367 TGTTCACGTCTCACTCTTGCATA 59.995 43.478 0.00 0.00 0.00 3.14
1161 4572 3.934457 TCACGTCTCACTCTTGCATAA 57.066 42.857 0.00 0.00 0.00 1.90
1162 4573 3.575630 TCACGTCTCACTCTTGCATAAC 58.424 45.455 0.00 0.00 0.00 1.89
1163 4574 3.255888 TCACGTCTCACTCTTGCATAACT 59.744 43.478 0.00 0.00 0.00 2.24
1164 4575 4.457949 TCACGTCTCACTCTTGCATAACTA 59.542 41.667 0.00 0.00 0.00 2.24
1165 4576 4.559251 CACGTCTCACTCTTGCATAACTAC 59.441 45.833 0.00 0.00 0.00 2.73
1166 4577 4.459685 ACGTCTCACTCTTGCATAACTACT 59.540 41.667 0.00 0.00 0.00 2.57
1168 4579 6.183360 ACGTCTCACTCTTGCATAACTACTAG 60.183 42.308 0.00 0.00 0.00 2.57
1169 4580 6.183360 CGTCTCACTCTTGCATAACTACTAGT 60.183 42.308 0.00 0.00 0.00 2.57
1170 4581 7.011202 CGTCTCACTCTTGCATAACTACTAGTA 59.989 40.741 1.89 1.89 0.00 1.82
1171 4582 8.124199 GTCTCACTCTTGCATAACTACTAGTAC 58.876 40.741 0.00 0.00 0.00 2.73
1172 4583 8.047911 TCTCACTCTTGCATAACTACTAGTACT 58.952 37.037 0.00 0.00 0.00 2.73
1173 4584 8.577048 TCACTCTTGCATAACTACTAGTACTT 57.423 34.615 0.00 0.00 0.00 2.24
1174 4585 8.675504 TCACTCTTGCATAACTACTAGTACTTC 58.324 37.037 0.00 0.00 0.00 3.01
1175 4586 7.640630 CACTCTTGCATAACTACTAGTACTTCG 59.359 40.741 0.00 0.00 0.00 3.79
1176 4587 7.336427 ACTCTTGCATAACTACTAGTACTTCGT 59.664 37.037 0.00 1.45 0.00 3.85
1202 4620 5.883685 TCTTGATCTATCCATGCTCAACT 57.116 39.130 0.00 0.00 0.00 3.16
1203 4621 5.608449 TCTTGATCTATCCATGCTCAACTG 58.392 41.667 0.00 0.00 0.00 3.16
1206 4624 5.363101 TGATCTATCCATGCTCAACTGAAC 58.637 41.667 0.00 0.00 0.00 3.18
1207 4625 4.824479 TCTATCCATGCTCAACTGAACA 57.176 40.909 0.00 0.00 0.00 3.18
1208 4626 4.507710 TCTATCCATGCTCAACTGAACAC 58.492 43.478 0.00 0.00 0.00 3.32
1210 4628 2.497138 TCCATGCTCAACTGAACACTG 58.503 47.619 0.00 0.00 0.00 3.66
1211 4629 1.538512 CCATGCTCAACTGAACACTGG 59.461 52.381 0.00 0.00 0.00 4.00
1212 4630 1.068748 CATGCTCAACTGAACACTGGC 60.069 52.381 0.00 0.00 0.00 4.85
1213 4631 0.107263 TGCTCAACTGAACACTGGCA 60.107 50.000 0.00 0.00 0.00 4.92
1214 4632 0.590195 GCTCAACTGAACACTGGCAG 59.410 55.000 14.16 14.16 38.10 4.85
1215 4633 1.811558 GCTCAACTGAACACTGGCAGA 60.812 52.381 23.66 0.00 36.07 4.26
1299 4766 4.715523 GTTGCCCAGGCGCAGGTA 62.716 66.667 10.83 2.91 45.51 3.08
1506 4973 3.640967 GGTTCTATCTCATGTCTGCCTCT 59.359 47.826 0.00 0.00 0.00 3.69
1632 5525 2.108168 ACATTCCGGCTGTAGCTAAGA 58.892 47.619 7.63 0.00 41.70 2.10
1703 5596 5.432885 AGACAAAATTACGGGAACACTTG 57.567 39.130 0.00 0.00 0.00 3.16
1704 5597 4.277423 AGACAAAATTACGGGAACACTTGG 59.723 41.667 0.00 0.00 0.00 3.61
1750 5650 1.296068 CAAAATTGCCGGGGTGCAT 59.704 52.632 2.18 0.00 41.70 3.96
1765 5666 0.840617 TGCATTAAGGCATCCCCGTA 59.159 50.000 11.36 0.00 39.25 4.02
1781 5682 2.140717 CCGTAGTGAAAGGTGTTGTCC 58.859 52.381 0.00 0.00 0.00 4.02
1800 5701 6.189677 TGTCCTGTTAGAAAGTTGTTTGTG 57.810 37.500 0.00 0.00 0.00 3.33
1816 5717 7.494952 AGTTGTTTGTGTCTTTTCTAGTACTCC 59.505 37.037 0.00 0.00 0.00 3.85
1829 5741 3.538634 AGTACTCCCTCCGCATAAAAC 57.461 47.619 0.00 0.00 0.00 2.43
1834 5753 1.807742 TCCCTCCGCATAAAACGTTTG 59.192 47.619 15.46 3.99 0.00 2.93
1878 5799 0.250553 AATCGAGTGGGGCGTTTTGA 60.251 50.000 0.00 0.00 0.00 2.69
1889 5810 0.312102 GCGTTTTGAAGCTCAGCCTT 59.688 50.000 0.00 0.00 0.00 4.35
1890 5811 1.269257 GCGTTTTGAAGCTCAGCCTTT 60.269 47.619 0.00 0.00 0.00 3.11
1891 5812 2.388121 CGTTTTGAAGCTCAGCCTTTG 58.612 47.619 0.00 0.00 0.00 2.77
1945 5869 6.998258 AATTCGAACTTGCAATTTCAGAAG 57.002 33.333 24.06 11.46 0.00 2.85
1948 5872 6.130298 TCGAACTTGCAATTTCAGAAGAAA 57.870 33.333 24.06 0.00 46.90 2.52
1950 5874 7.032580 TCGAACTTGCAATTTCAGAAGAAAAA 58.967 30.769 24.06 2.95 46.06 1.94
1977 5901 4.270566 TCTGAAAAACATGCATTGCACAAC 59.729 37.500 14.66 2.65 43.04 3.32
1985 5909 5.114780 ACATGCATTGCACAACTAAACAAA 58.885 33.333 14.66 0.00 43.04 2.83
1988 5912 5.599732 TGCATTGCACAACTAAACAAAGAT 58.400 33.333 7.38 0.00 31.71 2.40
2004 5930 6.486253 ACAAAGATGTGATGTGTATGTGTC 57.514 37.500 0.00 0.00 38.69 3.67
2034 5961 5.988310 TCAGATGAAATGCCTTGAAATGT 57.012 34.783 0.00 0.00 0.00 2.71
2036 5963 4.868171 CAGATGAAATGCCTTGAAATGTGG 59.132 41.667 0.00 0.00 0.00 4.17
2049 5976 5.021033 TGAAATGTGGTCTGTGCAAAAAT 57.979 34.783 0.00 0.00 0.00 1.82
2053 5980 6.594788 AATGTGGTCTGTGCAAAAATAGAT 57.405 33.333 0.00 0.00 0.00 1.98
2092 6028 3.758554 AGTGCATGTACTAAAAGGCCTTG 59.241 43.478 21.33 9.50 0.00 3.61
2093 6029 2.491693 TGCATGTACTAAAAGGCCTTGC 59.508 45.455 21.33 16.07 0.00 4.01
2094 6030 2.491693 GCATGTACTAAAAGGCCTTGCA 59.508 45.455 21.33 6.71 0.00 4.08
2096 6032 4.381932 GCATGTACTAAAAGGCCTTGCATT 60.382 41.667 21.33 12.64 32.65 3.56
2097 6033 5.723295 CATGTACTAAAAGGCCTTGCATTT 58.277 37.500 21.33 12.24 44.36 2.32
2098 6034 5.132897 TGTACTAAAAGGCCTTGCATTTG 57.867 39.130 21.33 13.12 41.66 2.32
2099 6035 3.044235 ACTAAAAGGCCTTGCATTTGC 57.956 42.857 21.33 0.00 41.66 3.68
2100 6036 2.634453 ACTAAAAGGCCTTGCATTTGCT 59.366 40.909 21.33 0.00 41.66 3.91
2101 6037 2.643995 AAAAGGCCTTGCATTTGCTT 57.356 40.000 21.33 3.55 41.66 3.91
2102 6038 2.643995 AAAGGCCTTGCATTTGCTTT 57.356 40.000 21.33 0.00 40.98 3.51
2103 6039 2.643995 AAGGCCTTGCATTTGCTTTT 57.356 40.000 19.73 0.00 42.66 2.27
2104 6040 2.643995 AGGCCTTGCATTTGCTTTTT 57.356 40.000 0.00 0.00 42.66 1.94
2134 6075 8.225107 GTGTAGCACTCATTTTAACGTATTTCA 58.775 33.333 0.00 0.00 0.00 2.69
2139 6080 7.429340 GCACTCATTTTAACGTATTTCATCCTG 59.571 37.037 0.00 0.00 0.00 3.86
2476 6989 3.181476 CCAACCAAAACCAAGTGGAAGAG 60.181 47.826 3.83 0.00 38.36 2.85
2530 7043 7.243604 TCTAACCTCCCTAATGTTAACGAAA 57.756 36.000 0.26 0.00 0.00 3.46
2537 7050 7.553044 CCTCCCTAATGTTAACGAAAGATTTCT 59.447 37.037 0.26 0.00 33.42 2.52
2579 7114 0.915364 AGCTGGAAGGGTCTCCATTC 59.085 55.000 4.85 4.85 44.59 2.67
2617 7152 8.039154 GCTCTAAGCAACTCTCTTCAAAGAGC 62.039 46.154 13.76 0.00 45.22 4.09
2658 7193 2.988636 TTCCCACCACCATTTCATCA 57.011 45.000 0.00 0.00 0.00 3.07
2659 7194 3.471430 TTCCCACCACCATTTCATCAT 57.529 42.857 0.00 0.00 0.00 2.45
2660 7195 4.599720 TTCCCACCACCATTTCATCATA 57.400 40.909 0.00 0.00 0.00 2.15
2661 7196 4.812403 TCCCACCACCATTTCATCATAT 57.188 40.909 0.00 0.00 0.00 1.78
2699 7234 3.261580 TGATAGAAGTGTTGATGGCACG 58.738 45.455 0.00 0.00 41.36 5.34
2713 7248 4.391830 TGATGGCACGTAGATTTCAACTTC 59.608 41.667 0.00 0.00 0.00 3.01
2796 7333 3.307059 CGAAACCCTCATGAGTTCCTTCT 60.307 47.826 21.11 0.00 0.00 2.85
2803 7352 4.453819 CCTCATGAGTTCCTTCTGACAAAC 59.546 45.833 21.11 0.00 0.00 2.93
3062 7626 7.915293 TCTCACCGCATTAATAAAGAAGAAA 57.085 32.000 0.00 0.00 0.00 2.52
3063 7627 8.330466 TCTCACCGCATTAATAAAGAAGAAAA 57.670 30.769 0.00 0.00 0.00 2.29
3065 7629 9.226345 CTCACCGCATTAATAAAGAAGAAAATC 57.774 33.333 0.00 0.00 0.00 2.17
3083 7647 6.609616 AGAAAATCAACAAGGTTTAAGGTCCA 59.390 34.615 0.00 0.00 0.00 4.02
3091 7655 3.910989 AGGTTTAAGGTCCATTATGCCC 58.089 45.455 0.00 0.00 0.00 5.36
3119 7683 7.109501 ACAAATGGAAAACAAAAAGCCTACTT 58.890 30.769 0.00 0.00 37.90 2.24
3121 7685 7.552458 AATGGAAAACAAAAAGCCTACTTTG 57.448 32.000 0.00 0.00 45.48 2.77
3128 7692 4.142249 ACAAAAAGCCTACTTTGGTGACAC 60.142 41.667 0.00 0.00 45.48 3.67
3182 7746 2.774234 TCCAATCCTTGACCTCATCCTC 59.226 50.000 0.00 0.00 0.00 3.71
3205 7769 5.353678 TCGATGTGTGCAATGATTATGTTCA 59.646 36.000 0.00 0.00 0.00 3.18
3214 7778 7.800380 GTGCAATGATTATGTTCAGCATAGTAC 59.200 37.037 0.00 0.00 40.74 2.73
3225 7789 7.485810 TGTTCAGCATAGTACGCTTATTTCTA 58.514 34.615 0.00 0.00 37.72 2.10
3252 7816 3.958798 CCCTTGCATTTCTCTCATTCCAT 59.041 43.478 0.00 0.00 0.00 3.41
3258 7822 4.025061 GCATTTCTCTCATTCCATGACTCG 60.025 45.833 0.00 0.00 35.06 4.18
3313 7882 0.175760 TATGCTCTCCTCGCAACACC 59.824 55.000 0.00 0.00 41.26 4.16
3316 7885 1.734477 CTCTCCTCGCAACACCACG 60.734 63.158 0.00 0.00 0.00 4.94
3362 7931 4.598257 GCGCTTGCTAGGAAGTGA 57.402 55.556 33.61 0.00 35.80 3.41
3365 7934 0.654683 CGCTTGCTAGGAAGTGATGC 59.345 55.000 27.83 12.54 35.80 3.91
3367 7936 1.679944 GCTTGCTAGGAAGTGATGCCA 60.680 52.381 23.06 0.00 0.00 4.92
3397 8162 6.592220 CCAATGCATCAATTCAAGATTTGACA 59.408 34.615 0.00 5.45 39.87 3.58
3433 8198 5.186021 TCTTTCTGATAGAGAACCCACACTC 59.814 44.000 0.00 0.00 40.60 3.51
3448 8213 3.334691 CACACTCGAACAACATATGGGT 58.665 45.455 7.80 1.95 0.00 4.51
3456 8221 0.461163 CAACATATGGGTCGCCGACA 60.461 55.000 20.08 0.00 33.68 4.35
3489 8254 5.439721 TCTTGCATAGCTGACATAAACCAT 58.560 37.500 0.00 0.00 0.00 3.55
3521 8286 2.026822 GCCTCTTCTCTCCAAATGGTCA 60.027 50.000 0.00 0.00 36.34 4.02
3552 8317 2.981859 TTCTAAGGACGAGCCAATCC 57.018 50.000 0.00 0.00 40.02 3.01
3605 8371 0.533491 CAACCCATTGGCACCATGAG 59.467 55.000 0.00 0.00 33.59 2.90
3685 8451 3.331150 TCTTGCAAACAATATCGTCGGT 58.669 40.909 0.00 0.00 34.61 4.69
3724 8495 2.226674 GCACTTGTTCCAGACTAAAGGC 59.773 50.000 0.00 0.00 0.00 4.35
3725 8496 3.476552 CACTTGTTCCAGACTAAAGGCA 58.523 45.455 0.00 0.00 0.00 4.75
3726 8497 3.251004 CACTTGTTCCAGACTAAAGGCAC 59.749 47.826 0.00 0.00 0.00 5.01
3736 8508 4.516698 CAGACTAAAGGCACTGAATTGTGT 59.483 41.667 0.00 0.00 40.86 3.72
3761 8533 2.936928 GGTTACCAAGAACCCACGG 58.063 57.895 0.00 0.00 42.74 4.94
3777 8549 0.744414 ACGGGCCATGTCAATCTTCG 60.744 55.000 4.39 0.00 0.00 3.79
3812 8736 0.037975 CATGCAACAAAGACCAGGGC 60.038 55.000 0.00 0.00 0.00 5.19
3820 8744 2.158385 ACAAAGACCAGGGCCACAATAA 60.158 45.455 6.18 0.00 0.00 1.40
3850 8774 2.846532 CCCCAAGAAGCCACAGGT 59.153 61.111 0.00 0.00 0.00 4.00
3903 8827 0.389296 CCATGACGGTAGTTGCGACA 60.389 55.000 6.90 0.00 0.00 4.35
3919 8843 1.534175 CGACATAGAAGAGGTCCACGC 60.534 57.143 0.00 0.00 35.35 5.34
3922 8846 1.392710 ATAGAAGAGGTCCACGCCCG 61.393 60.000 0.00 0.00 0.00 6.13
3954 8878 0.759346 GCGTCTCCAATCCTACCCAT 59.241 55.000 0.00 0.00 0.00 4.00
4001 11061 0.527113 CATGGCCAACGCAATCAGAA 59.473 50.000 10.96 0.00 36.38 3.02
4089 11156 0.031857 CGCTTTGCATTGACCACCAA 59.968 50.000 0.00 0.00 39.41 3.67
4095 11162 1.202463 TGCATTGACCACCAAAAACCG 60.202 47.619 0.00 0.00 38.43 4.44
4143 11210 0.419865 TCCCATGTTAGGACCAGGGA 59.580 55.000 0.00 0.00 42.34 4.20
4169 11236 0.253044 GTGGTAGATTGCCTGCTCCA 59.747 55.000 0.00 0.00 0.00 3.86
4174 11241 2.443390 ATTGCCTGCTCCATGGGC 60.443 61.111 13.02 14.76 45.45 5.36
4193 11260 0.169672 CATCGCTTTGACAAGGGCAG 59.830 55.000 13.15 7.76 41.68 4.85
4225 11292 1.226542 CATGATGCTGCCTCCCTGT 59.773 57.895 0.00 0.00 0.00 4.00
4273 11341 0.528684 GACGAGAGGCTCCAAATCGG 60.529 60.000 22.54 9.25 37.69 4.18
4300 11368 1.943968 GCCAACGGTGCATAGACAGAA 60.944 52.381 0.00 0.00 0.00 3.02
4301 11369 2.422597 CCAACGGTGCATAGACAGAAA 58.577 47.619 0.00 0.00 0.00 2.52
4321 11389 6.423302 CAGAAATAGCCCGAGATATATCATGC 59.577 42.308 15.08 10.64 0.00 4.06
4351 11419 2.076863 CCTACTTGGCAGGAAAACTCG 58.923 52.381 2.65 0.00 34.91 4.18
4370 11438 1.594331 GCGAGGACCTTGTCAAGTTT 58.406 50.000 10.60 0.00 33.68 2.66
4376 11444 4.536765 AGGACCTTGTCAAGTTTGATGTT 58.463 39.130 11.61 0.00 39.73 2.71
4389 11457 4.333649 AGTTTGATGTTAGTGCATCGGATG 59.666 41.667 13.63 13.63 45.98 3.51
4425 11493 3.454375 TCTTCTCCAAGTTCGTCACAAC 58.546 45.455 0.00 0.00 0.00 3.32
4490 11558 2.092158 TGAATATCCACCCGAATTGGCA 60.092 45.455 0.00 0.00 35.87 4.92
4499 11567 1.605202 CCCGAATTGGCACCACAAAAG 60.605 52.381 0.00 0.00 35.87 2.27
4500 11568 1.139163 CGAATTGGCACCACAAAAGC 58.861 50.000 0.00 0.00 33.48 3.51
4527 11595 4.489810 CGTCATCTGCATATAAGGAGGTC 58.510 47.826 0.00 0.00 0.00 3.85
4539 11607 1.280457 AGGAGGTCCGAATGAAAGCT 58.720 50.000 0.00 0.00 42.08 3.74
4573 11641 1.889829 CAGGATGGAGATAGTCCCGAC 59.110 57.143 0.00 0.00 46.31 4.79
4579 11647 1.666054 GAGATAGTCCCGACGAGTGT 58.334 55.000 0.00 0.00 36.20 3.55
4615 11684 1.133216 TCTGAAGCAGGTCGATCGAAG 59.867 52.381 21.31 13.79 31.51 3.79
4631 11700 1.813862 CGAAGCACAAAGGGAAGTGGA 60.814 52.381 0.00 0.00 36.29 4.02
4638 11707 1.349026 CAAAGGGAAGTGGAGAGAGCA 59.651 52.381 0.00 0.00 0.00 4.26
4695 11765 1.542547 GCTCCCCAAGAACTCAACGAA 60.543 52.381 0.00 0.00 0.00 3.85
4742 11812 0.462047 GTGGTAAGCATGTCCCGGAG 60.462 60.000 0.73 0.00 0.00 4.63
4748 11818 0.620556 AGCATGTCCCGGAGTTTCAT 59.379 50.000 0.73 0.00 0.00 2.57
4803 11873 2.586648 GGTCCCACCAAACAGAATCT 57.413 50.000 0.00 0.00 38.42 2.40
4813 11883 5.412904 CACCAAACAGAATCTAAGGTCTTCC 59.587 44.000 0.00 0.00 0.00 3.46
4830 11900 6.100714 AGGTCTTCCTGGTGTCTAACTTAAAA 59.899 38.462 0.00 0.00 43.33 1.52
4837 11907 6.996282 CCTGGTGTCTAACTTAAAAAGGAGAA 59.004 38.462 0.00 0.00 0.00 2.87
4898 11968 8.492673 TTGTGAACATATAGGAAGTTGTCATC 57.507 34.615 0.00 0.00 0.00 2.92
4919 11989 5.188327 TCGATACTCCATGACTTGATGAC 57.812 43.478 0.00 0.00 0.00 3.06
4934 12004 2.306805 TGATGACAGCACTTTGGATCCT 59.693 45.455 14.23 0.00 0.00 3.24
5002 12072 9.504708 TCATCTTTGCCACAATTTATTTTTCAT 57.495 25.926 0.00 0.00 0.00 2.57
5088 12158 0.674895 GAGAAGCACGATGTTGGCCT 60.675 55.000 3.32 0.00 0.00 5.19
5140 12211 1.926511 GCAGGGAAGAACGCACCATG 61.927 60.000 0.00 0.00 38.31 3.66
5144 12215 2.156098 GGGAAGAACGCACCATGTAAA 58.844 47.619 0.00 0.00 0.00 2.01
5149 12220 3.219281 AGAACGCACCATGTAAACCTTT 58.781 40.909 0.00 0.00 0.00 3.11
5153 12224 1.337728 GCACCATGTAAACCTTTGGGC 60.338 52.381 0.00 0.00 35.63 5.36
5180 12252 1.133025 CCTTGTCCTTAGGCATTTGCG 59.867 52.381 0.00 0.00 43.26 4.85
5232 12304 2.029964 GTCGCCAAGGGTCGACAA 59.970 61.111 18.91 0.00 44.78 3.18
5254 12326 4.503910 AGTTGCATTGCGTGAAGTCTATA 58.496 39.130 3.84 0.00 0.00 1.31
5328 12400 0.398318 AAGTGCTCCTGGGTCAACTC 59.602 55.000 0.00 0.00 0.00 3.01
5347 12419 5.293319 ACTCCTCTTTCTCATCATGATGG 57.707 43.478 30.54 21.98 39.24 3.51
5402 12912 4.899502 AGTTCAACACCTGATAACTCCAG 58.100 43.478 0.00 0.00 32.78 3.86
5442 12952 4.517453 GCTAGTCGACACCTGATAATCTCT 59.483 45.833 19.50 0.00 0.00 3.10
5445 12955 4.950475 AGTCGACACCTGATAATCTCTTGA 59.050 41.667 19.50 0.00 0.00 3.02
5491 13008 5.065218 GGCATGTACTCTGTTTGGTTGATAG 59.935 44.000 0.00 0.00 0.00 2.08
5493 13010 6.149474 GCATGTACTCTGTTTGGTTGATAGTT 59.851 38.462 0.00 0.00 0.00 2.24
5494 13011 7.521529 CATGTACTCTGTTTGGTTGATAGTTG 58.478 38.462 0.00 0.00 0.00 3.16
5495 13012 6.822442 TGTACTCTGTTTGGTTGATAGTTGA 58.178 36.000 0.00 0.00 0.00 3.18
5496 13013 6.704493 TGTACTCTGTTTGGTTGATAGTTGAC 59.296 38.462 0.00 0.00 0.00 3.18
5497 13014 5.680619 ACTCTGTTTGGTTGATAGTTGACA 58.319 37.500 0.00 0.00 0.00 3.58
5498 13015 5.527582 ACTCTGTTTGGTTGATAGTTGACAC 59.472 40.000 0.00 0.00 0.00 3.67
5499 13016 5.432645 TCTGTTTGGTTGATAGTTGACACA 58.567 37.500 0.00 0.00 0.00 3.72
5500 13017 6.061441 TCTGTTTGGTTGATAGTTGACACAT 58.939 36.000 0.00 0.00 0.00 3.21
5505 13022 5.237815 TGGTTGATAGTTGACACATGTCTC 58.762 41.667 12.98 0.00 44.99 3.36
5514 13031 5.048364 AGTTGACACATGTCTCTACTCTGTC 60.048 44.000 11.31 6.42 44.99 3.51
5641 13158 7.381408 GGGTACTTTTCTTTTCTTGATTTTCCG 59.619 37.037 0.00 0.00 0.00 4.30
5682 13203 2.222819 GCTTAATCTGCAGTGCGTGTAC 60.223 50.000 14.67 0.00 0.00 2.90
5701 13222 8.842777 GCGTGTACAATCGTAATTAAACATTTT 58.157 29.630 0.00 0.00 0.00 1.82
5726 13247 4.682860 GCATGACAAAAACTGGATGAACAG 59.317 41.667 0.00 0.00 44.03 3.16
5879 13470 9.117183 TGTCTGATGATATTTTCCTTCTCATTG 57.883 33.333 0.00 0.00 0.00 2.82
5902 13493 3.057174 GGTGCATAACAAATTTCGGTGGA 60.057 43.478 0.00 0.00 0.00 4.02
6051 13642 2.731451 CGTATGCATTCCGATTGTCGAT 59.269 45.455 3.54 0.00 43.74 3.59
6060 13651 1.407618 CCGATTGTCGATGGTGTCCTA 59.592 52.381 0.22 0.00 43.74 2.94
6089 13685 3.641436 GGGACCACAGAAAAGGTGAATTT 59.359 43.478 0.00 0.00 38.50 1.82
6097 13693 7.169645 CCACAGAAAAGGTGAATTTACATTGTG 59.830 37.037 0.73 5.94 38.54 3.33
6099 13695 7.920682 ACAGAAAAGGTGAATTTACATTGTGTC 59.079 33.333 0.73 0.78 0.00 3.67
6135 13734 7.761038 AAACTAACCTCCTTCCAATTACTTG 57.239 36.000 0.00 0.00 0.00 3.16
6170 13772 5.967088 TCTGCTTCTTGTAACTATGAGGAC 58.033 41.667 0.00 0.00 0.00 3.85
6214 13816 5.953183 TCTGACCAATCAAAATGCACATAC 58.047 37.500 0.00 0.00 33.30 2.39
6292 13894 4.728772 TCAACAAGAAACCCACATGATCT 58.271 39.130 0.00 0.00 0.00 2.75
6330 13932 1.039856 ACCAAACCAGCCACATTGAC 58.960 50.000 0.00 0.00 0.00 3.18
6348 13950 3.268013 GACCAACAGTCATTCCAAACG 57.732 47.619 0.00 0.00 45.55 3.60
6352 13954 2.254546 ACAGTCATTCCAAACGCAGA 57.745 45.000 0.00 0.00 0.00 4.26
6362 13964 0.868406 CAAACGCAGAGGAAGACACC 59.132 55.000 0.00 0.00 0.00 4.16
6530 14186 1.367659 GAGCTGATGCAGGTTGAGAC 58.632 55.000 0.00 0.00 42.53 3.36
6610 14266 0.031178 GGTTTGCCAGAACAGCACTG 59.969 55.000 0.00 0.00 40.69 3.66
6611 14267 1.024271 GTTTGCCAGAACAGCACTGA 58.976 50.000 4.31 0.00 40.69 3.41
6704 14360 5.189145 ACCCTCAATCGTCAGGTAGTAATTT 59.811 40.000 0.00 0.00 0.00 1.82
6747 14403 1.117994 CTGGCTAGCATCTGACCTCA 58.882 55.000 18.24 0.50 0.00 3.86
6759 14415 3.242867 TCTGACCTCACTTGATGTCCTT 58.757 45.455 10.90 0.00 38.42 3.36
6822 14478 0.318699 TGCTCACTACGCACAGACAC 60.319 55.000 0.00 0.00 31.40 3.67
6901 14557 0.409876 TCCTACCTGGCAGTCTCACT 59.590 55.000 14.43 0.00 35.26 3.41
7171 14833 0.682852 CCCTTCGTCACCAAGGTACA 59.317 55.000 0.01 0.00 39.15 2.90
7181 14843 2.552315 CACCAAGGTACACACACAATCC 59.448 50.000 0.00 0.00 0.00 3.01
7205 14963 6.071728 CCTCAGCCAAAAAGATTCAGTAATGT 60.072 38.462 0.00 0.00 0.00 2.71
7206 14964 7.121168 CCTCAGCCAAAAAGATTCAGTAATGTA 59.879 37.037 0.00 0.00 0.00 2.29
7207 14965 7.816640 TCAGCCAAAAAGATTCAGTAATGTAC 58.183 34.615 0.00 0.00 0.00 2.90
7208 14966 7.446931 TCAGCCAAAAAGATTCAGTAATGTACA 59.553 33.333 0.00 0.00 0.00 2.90
7517 15311 0.393402 GCTGGTGACCATCATGCAGA 60.393 55.000 4.03 0.00 30.82 4.26
7621 15444 5.880054 CCAAGGTACAGTTATTCTTGGTG 57.120 43.478 13.62 0.00 45.49 4.17
7648 15471 4.982295 TCATCTGTCTGAACGTTACTGTTG 59.018 41.667 0.00 6.10 30.75 3.33
7676 15499 1.705256 ATCTTGTTTGCTGCATTGCG 58.295 45.000 1.84 0.24 35.36 4.85
7757 15580 4.381718 GCGATCCATCTCATCATCTCATCA 60.382 45.833 0.00 0.00 0.00 3.07
7807 15633 2.855209 AGCATATGTCATCAGCCTCC 57.145 50.000 4.29 0.00 0.00 4.30
7823 15649 1.496429 CCTCCCCCTTGATGCTTATGT 59.504 52.381 0.00 0.00 0.00 2.29
7907 15756 9.770097 CCTCTGTTCATACATATCAACACTAAT 57.230 33.333 0.00 0.00 32.86 1.73
7950 15799 2.034305 GCTAAGGATGATGCTTTGCCAG 59.966 50.000 18.88 5.95 39.66 4.85
7987 15836 9.801873 TTGCAAAACTATCATAAAGCCTTATTC 57.198 29.630 0.00 0.00 0.00 1.75
7995 15844 6.773976 TCATAAAGCCTTATTCCACCTTTG 57.226 37.500 0.00 0.00 0.00 2.77
8432 16289 0.919710 GTCCAGGCAAGAACCCCTAT 59.080 55.000 0.00 0.00 0.00 2.57
8732 16589 2.530701 GAGACGGATACCCCAGATCAT 58.469 52.381 0.00 0.00 34.14 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 34 7.744087 TCTACAAATACCATGGATGTATTGC 57.256 36.000 21.47 0.00 0.00 3.56
88 93 1.072331 TGGAACAAGCCCTCTCAGAAC 59.928 52.381 0.00 0.00 31.92 3.01
107 112 6.211587 TGGTAATGGAGCAAATGATTCTTG 57.788 37.500 0.00 0.00 30.90 3.02
128 133 4.488126 ACAAATCTGACGTGAAACATGG 57.512 40.909 0.00 0.00 35.74 3.66
130 135 7.361201 CCAATCTACAAATCTGACGTGAAACAT 60.361 37.037 0.00 0.00 35.74 2.71
201 206 3.146066 TGCTGAAATGTGGACTGTAACC 58.854 45.455 0.00 0.00 0.00 2.85
268 405 4.483476 AAGTTGTCAAGTTAATGTCCGC 57.517 40.909 3.72 0.00 0.00 5.54
271 408 8.185505 TGTGGTAAAAGTTGTCAAGTTAATGTC 58.814 33.333 6.07 0.00 0.00 3.06
272 409 8.057536 TGTGGTAAAAGTTGTCAAGTTAATGT 57.942 30.769 6.07 0.00 0.00 2.71
303 440 0.529337 CATGCTCCTGGAGTGCTACG 60.529 60.000 23.92 4.73 35.94 3.51
339 476 1.456923 GGAAAATTCACAGCGCTTTGC 59.543 47.619 18.66 5.08 46.98 3.68
340 477 2.741612 TGGAAAATTCACAGCGCTTTG 58.258 42.857 17.44 17.44 0.00 2.77
341 478 3.123050 GTTGGAAAATTCACAGCGCTTT 58.877 40.909 7.50 0.00 0.00 3.51
342 479 2.545742 GGTTGGAAAATTCACAGCGCTT 60.546 45.455 7.50 0.00 0.00 4.68
343 480 1.000274 GGTTGGAAAATTCACAGCGCT 60.000 47.619 2.64 2.64 0.00 5.92
344 481 1.418373 GGTTGGAAAATTCACAGCGC 58.582 50.000 0.00 0.00 0.00 5.92
439 580 1.140589 CGCCCTTTGTGCACAAACA 59.859 52.632 35.10 20.34 40.55 2.83
480 621 2.122783 CCTTCCATTTCGGTAAGGCA 57.877 50.000 0.00 0.00 36.14 4.75
485 626 1.404986 CGTCAGCCTTCCATTTCGGTA 60.405 52.381 0.00 0.00 35.57 4.02
571 712 3.416156 CTGCAGAAAGGAGTAAAAGGCT 58.584 45.455 8.42 0.00 0.00 4.58
624 779 0.248580 GGCATGTGTGTGTGTGTGTG 60.249 55.000 0.00 0.00 0.00 3.82
625 780 0.394216 AGGCATGTGTGTGTGTGTGT 60.394 50.000 0.00 0.00 0.00 3.72
626 781 0.740149 AAGGCATGTGTGTGTGTGTG 59.260 50.000 0.00 0.00 0.00 3.82
627 782 1.946768 GTAAGGCATGTGTGTGTGTGT 59.053 47.619 0.00 0.00 0.00 3.72
667 822 3.560025 GCAGAGAGAGGGAGAGAGATAGG 60.560 56.522 0.00 0.00 0.00 2.57
670 825 2.138542 AGCAGAGAGAGGGAGAGAGAT 58.861 52.381 0.00 0.00 0.00 2.75
679 834 0.977108 AAGGGAGCAGCAGAGAGAGG 60.977 60.000 0.00 0.00 0.00 3.69
731 943 0.756070 TGGACACTCACGTACCACCA 60.756 55.000 0.00 0.00 0.00 4.17
733 945 2.450609 AATGGACACTCACGTACCAC 57.549 50.000 0.00 0.00 33.70 4.16
734 946 3.135225 CAAAATGGACACTCACGTACCA 58.865 45.455 0.00 0.00 34.77 3.25
736 948 4.128554 CACAAAATGGACACTCACGTAC 57.871 45.455 0.00 0.00 0.00 3.67
749 962 6.920210 GGTTTTCTTCTTCTCTCCACAAAATG 59.080 38.462 0.00 0.00 0.00 2.32
880 1110 2.821366 CACCAGACGGCTCATGGC 60.821 66.667 0.00 0.00 37.64 4.40
881 1111 2.821366 GCACCAGACGGCTCATGG 60.821 66.667 0.00 0.00 40.10 3.66
930 1364 0.252742 GGAGAGGTGGGGGAAAGAGA 60.253 60.000 0.00 0.00 0.00 3.10
950 1384 1.568597 CAGAGAGGGGGAGAGAGAGAA 59.431 57.143 0.00 0.00 0.00 2.87
961 1395 0.752054 CTAGCTTGCTCAGAGAGGGG 59.248 60.000 0.00 0.00 0.00 4.79
972 1416 0.806492 GCGACCTACCACTAGCTTGC 60.806 60.000 0.00 0.00 0.00 4.01
978 1422 1.750399 GTCCGGCGACCTACCACTA 60.750 63.158 9.30 0.00 32.40 2.74
1080 1578 3.322466 CCTTGGTCGGGGCAGAGT 61.322 66.667 0.00 0.00 0.00 3.24
1144 4552 4.987832 AGTAGTTATGCAAGAGTGAGACG 58.012 43.478 0.00 0.00 0.00 4.18
1154 4565 7.819644 TGAACGAAGTACTAGTAGTTATGCAA 58.180 34.615 20.50 6.72 45.00 4.08
1155 4566 7.381766 TGAACGAAGTACTAGTAGTTATGCA 57.618 36.000 20.50 14.39 45.00 3.96
1156 4567 8.344098 AGATGAACGAAGTACTAGTAGTTATGC 58.656 37.037 20.50 12.34 45.00 3.14
1159 4570 9.440773 TCAAGATGAACGAAGTACTAGTAGTTA 57.559 33.333 20.50 7.49 45.00 2.24
1160 4571 8.332996 TCAAGATGAACGAAGTACTAGTAGTT 57.667 34.615 20.57 20.57 45.00 2.24
1161 4572 7.918536 TCAAGATGAACGAAGTACTAGTAGT 57.081 36.000 8.14 8.14 45.00 2.73
1162 4573 8.832521 AGATCAAGATGAACGAAGTACTAGTAG 58.167 37.037 1.87 0.00 45.00 2.57
1163 4574 8.734218 AGATCAAGATGAACGAAGTACTAGTA 57.266 34.615 0.00 0.00 45.00 1.82
1164 4575 7.633193 AGATCAAGATGAACGAAGTACTAGT 57.367 36.000 0.00 0.00 45.00 2.57
1165 4576 9.820229 GATAGATCAAGATGAACGAAGTACTAG 57.180 37.037 0.00 0.00 45.00 2.57
1166 4577 8.784994 GGATAGATCAAGATGAACGAAGTACTA 58.215 37.037 0.00 0.00 45.00 1.82
1168 4579 7.426410 TGGATAGATCAAGATGAACGAAGTAC 58.574 38.462 0.00 0.00 45.00 2.73
1169 4580 7.582667 TGGATAGATCAAGATGAACGAAGTA 57.417 36.000 0.00 0.00 45.00 2.24
1171 4582 6.128607 GCATGGATAGATCAAGATGAACGAAG 60.129 42.308 0.00 0.00 0.00 3.79
1172 4583 5.698089 GCATGGATAGATCAAGATGAACGAA 59.302 40.000 0.00 0.00 0.00 3.85
1173 4584 5.011431 AGCATGGATAGATCAAGATGAACGA 59.989 40.000 0.00 0.00 0.00 3.85
1174 4585 5.236282 AGCATGGATAGATCAAGATGAACG 58.764 41.667 0.00 0.00 0.00 3.95
1175 4586 6.228995 TGAGCATGGATAGATCAAGATGAAC 58.771 40.000 0.00 0.00 0.00 3.18
1176 4587 6.429521 TGAGCATGGATAGATCAAGATGAA 57.570 37.500 0.00 0.00 0.00 2.57
1202 4620 2.666190 GCGCTCTGCCAGTGTTCA 60.666 61.111 0.00 0.00 37.76 3.18
1458 4925 1.677966 CTCCGTCAGGTCTTCCGGA 60.678 63.158 0.00 0.00 46.44 5.14
1541 5008 1.208642 AAGAAAAGCTGCAAACGCGC 61.209 50.000 5.73 0.00 0.00 6.86
1542 5009 0.499761 CAAGAAAAGCTGCAAACGCG 59.500 50.000 3.53 3.53 0.00 6.01
1543 5010 0.230515 GCAAGAAAAGCTGCAAACGC 59.769 50.000 1.02 0.00 0.00 4.84
1544 5011 1.256117 GTGCAAGAAAAGCTGCAAACG 59.744 47.619 1.02 0.00 39.10 3.60
1574 5045 8.015185 AGAAAAGGCGGTAACAAGATATAGTA 57.985 34.615 0.00 0.00 0.00 1.82
1575 5046 6.885922 AGAAAAGGCGGTAACAAGATATAGT 58.114 36.000 0.00 0.00 0.00 2.12
1576 5047 7.787725 AAGAAAAGGCGGTAACAAGATATAG 57.212 36.000 0.00 0.00 0.00 1.31
1577 5048 8.480501 AGTAAGAAAAGGCGGTAACAAGATATA 58.519 33.333 0.00 0.00 0.00 0.86
1578 5049 7.336396 AGTAAGAAAAGGCGGTAACAAGATAT 58.664 34.615 0.00 0.00 0.00 1.63
1632 5525 4.625607 AGATGGACCGAAACTTCTCTTT 57.374 40.909 0.00 0.00 0.00 2.52
1703 5596 3.386543 CTATGTAGCACACCTGGCC 57.613 57.895 0.00 0.00 0.00 5.36
1741 5641 1.455383 GGATGCCTTAATGCACCCCG 61.455 60.000 4.80 0.00 45.48 5.73
1750 5650 1.868713 TCACTACGGGGATGCCTTAA 58.131 50.000 2.19 0.00 0.00 1.85
1765 5666 3.366052 AACAGGACAACACCTTTCACT 57.634 42.857 0.00 0.00 38.32 3.41
1781 5682 8.742554 AAAAGACACAAACAACTTTCTAACAG 57.257 30.769 0.00 0.00 32.52 3.16
1800 5701 3.181488 GCGGAGGGAGTACTAGAAAAGAC 60.181 52.174 0.00 0.00 0.00 3.01
1816 5717 2.981400 ACAAACGTTTTATGCGGAGG 57.019 45.000 11.66 0.00 0.00 4.30
1861 5780 0.882927 CTTCAAAACGCCCCACTCGA 60.883 55.000 0.00 0.00 0.00 4.04
1878 5799 0.251077 CCTCCACAAAGGCTGAGCTT 60.251 55.000 3.72 0.00 37.29 3.74
1889 5810 2.695666 TCAAAAATTTCGGCCTCCACAA 59.304 40.909 0.00 0.00 0.00 3.33
1890 5811 2.311463 TCAAAAATTTCGGCCTCCACA 58.689 42.857 0.00 0.00 0.00 4.17
1891 5812 3.378911 TTCAAAAATTTCGGCCTCCAC 57.621 42.857 0.00 0.00 0.00 4.02
1926 5850 6.810888 TTTTCTTCTGAAATTGCAAGTTCG 57.189 33.333 28.35 23.08 41.24 3.95
1950 5874 6.038382 TGTGCAATGCATGTTTTTCAGATTTT 59.962 30.769 12.38 0.00 41.91 1.82
1954 5878 4.056092 TGTGCAATGCATGTTTTTCAGA 57.944 36.364 12.38 0.00 41.91 3.27
1955 5879 4.271533 AGTTGTGCAATGCATGTTTTTCAG 59.728 37.500 12.38 0.00 41.91 3.02
1956 5880 4.190001 AGTTGTGCAATGCATGTTTTTCA 58.810 34.783 12.38 0.00 41.91 2.69
1957 5881 4.799419 AGTTGTGCAATGCATGTTTTTC 57.201 36.364 12.38 0.00 41.91 2.29
1958 5882 6.093219 TGTTTAGTTGTGCAATGCATGTTTTT 59.907 30.769 12.38 0.00 41.91 1.94
1959 5883 5.583854 TGTTTAGTTGTGCAATGCATGTTTT 59.416 32.000 12.38 0.00 41.91 2.43
1960 5884 5.114780 TGTTTAGTTGTGCAATGCATGTTT 58.885 33.333 12.38 0.76 41.91 2.83
1961 5885 4.691175 TGTTTAGTTGTGCAATGCATGTT 58.309 34.783 12.38 0.38 41.91 2.71
1962 5886 4.319139 TGTTTAGTTGTGCAATGCATGT 57.681 36.364 12.38 0.00 41.91 3.21
1963 5887 5.462729 TCTTTGTTTAGTTGTGCAATGCATG 59.537 36.000 12.38 0.00 41.91 4.06
1964 5888 5.599732 TCTTTGTTTAGTTGTGCAATGCAT 58.400 33.333 12.38 0.00 41.91 3.96
1965 5889 5.003692 TCTTTGTTTAGTTGTGCAATGCA 57.996 34.783 2.72 2.72 35.60 3.96
1966 5890 5.463061 ACATCTTTGTTTAGTTGTGCAATGC 59.537 36.000 0.00 0.00 29.55 3.56
1972 5896 7.195646 ACACATCACATCTTTGTTTAGTTGTG 58.804 34.615 0.00 0.00 42.85 3.33
1977 5901 8.506437 ACACATACACATCACATCTTTGTTTAG 58.494 33.333 0.00 0.00 32.34 1.85
1985 5909 9.453572 AATTTTAGACACATACACATCACATCT 57.546 29.630 0.00 0.00 0.00 2.90
1988 5912 9.061435 TGAAATTTTAGACACATACACATCACA 57.939 29.630 0.00 0.00 0.00 3.58
2023 5950 1.336240 GCACAGACCACATTTCAAGGC 60.336 52.381 0.00 0.00 0.00 4.35
2025 5952 3.713858 TTGCACAGACCACATTTCAAG 57.286 42.857 0.00 0.00 0.00 3.02
2061 5997 8.892723 CCTTTTAGTACATGCACTATTCATTCA 58.107 33.333 6.63 0.00 31.24 2.57
2063 5999 7.201821 GGCCTTTTAGTACATGCACTATTCATT 60.202 37.037 6.63 0.00 31.24 2.57
2077 6013 3.926527 GCAAATGCAAGGCCTTTTAGTAC 59.073 43.478 17.61 1.81 41.59 2.73
2103 6039 7.251994 ACGTTAAAATGAGTGCTACACAAAAA 58.748 30.769 0.00 0.00 36.74 1.94
2104 6040 6.787225 ACGTTAAAATGAGTGCTACACAAAA 58.213 32.000 0.00 0.00 36.74 2.44
2105 6041 6.366315 ACGTTAAAATGAGTGCTACACAAA 57.634 33.333 0.00 0.00 36.74 2.83
2106 6042 5.994887 ACGTTAAAATGAGTGCTACACAA 57.005 34.783 0.00 0.00 36.74 3.33
2107 6043 7.661127 AATACGTTAAAATGAGTGCTACACA 57.339 32.000 0.00 0.00 36.74 3.72
2108 6044 8.225107 TGAAATACGTTAAAATGAGTGCTACAC 58.775 33.333 0.00 0.00 34.10 2.90
2109 6045 8.312896 TGAAATACGTTAAAATGAGTGCTACA 57.687 30.769 0.00 0.00 0.00 2.74
2110 6046 9.422196 GATGAAATACGTTAAAATGAGTGCTAC 57.578 33.333 0.00 0.00 0.00 3.58
2200 6153 8.610248 ATCAAAATTCAAATTTGCATGTCTCA 57.390 26.923 13.54 0.00 38.53 3.27
2203 6156 9.834628 AATGATCAAAATTCAAATTTGCATGTC 57.165 25.926 13.54 4.08 38.53 3.06
2241 6194 1.000521 CAGCTTGGCCTCCATGGAA 60.001 57.895 17.00 0.00 38.35 3.53
2287 6240 8.965819 CAGCACTACCTCTGTATCATAATATCT 58.034 37.037 0.00 0.00 0.00 1.98
2288 6241 8.744652 ACAGCACTACCTCTGTATCATAATATC 58.255 37.037 0.00 0.00 41.32 1.63
2476 6989 1.098050 AATTCATTGTCGGCTCTGGC 58.902 50.000 0.00 0.00 37.82 4.85
2521 7034 6.812160 TGGCTCTCTAGAAATCTTTCGTTAAC 59.188 38.462 0.00 0.00 41.92 2.01
2530 7043 4.280677 CGAGGAATGGCTCTCTAGAAATCT 59.719 45.833 0.00 0.00 0.00 2.40
2537 7050 1.215673 ACTCCGAGGAATGGCTCTCTA 59.784 52.381 0.00 0.00 0.00 2.43
2579 7114 6.038271 AGTTGCTTAGAGCCAAATATTTACCG 59.962 38.462 0.00 0.00 41.51 4.02
2617 7152 6.587608 GGAAATTTCTCAACCTAGCAACAATG 59.412 38.462 17.42 0.00 0.00 2.82
2682 7217 2.299013 TCTACGTGCCATCAACACTTCT 59.701 45.455 0.00 0.00 35.84 2.85
2761 7298 4.080807 TGAGGGTTTCGATAAGCACCATAA 60.081 41.667 10.26 0.00 0.00 1.90
2796 7333 3.298686 TGTACACAATGGGGTTTGTCA 57.701 42.857 0.00 0.00 37.73 3.58
2803 7352 2.727123 TGCCTATGTACACAATGGGG 57.273 50.000 0.00 0.00 0.00 4.96
2866 7415 6.517529 GCACCTTGGTGTGGTAAATTCAATTA 60.518 38.462 19.47 0.00 35.80 1.40
3034 7597 9.778741 TCTTCTTTATTAATGCGGTGAGATAAT 57.221 29.630 0.00 0.00 0.00 1.28
3043 7607 9.352784 TGTTGATTTTCTTCTTTATTAATGCGG 57.647 29.630 0.00 0.00 0.00 5.69
3062 7626 6.994421 AATGGACCTTAAACCTTGTTGATT 57.006 33.333 0.00 0.00 0.00 2.57
3063 7627 7.363793 GCATAATGGACCTTAAACCTTGTTGAT 60.364 37.037 0.00 0.00 0.00 2.57
3065 7629 6.099341 GCATAATGGACCTTAAACCTTGTTG 58.901 40.000 0.00 0.00 0.00 3.33
3075 7639 2.583101 TGTTGGGGCATAATGGACCTTA 59.417 45.455 0.00 0.00 35.71 2.69
3083 7647 5.222007 TGTTTTCCATTTGTTGGGGCATAAT 60.222 36.000 0.00 0.00 46.45 1.28
3111 7675 1.000955 CTCGTGTCACCAAAGTAGGCT 59.999 52.381 0.00 0.00 0.00 4.58
3119 7683 1.478916 TGAGTTCACTCGTGTCACCAA 59.521 47.619 2.54 0.00 45.72 3.67
3121 7685 2.128035 CTTGAGTTCACTCGTGTCACC 58.872 52.381 2.54 0.00 45.72 4.02
3128 7692 1.453524 CGAAGCACTTGAGTTCACTCG 59.546 52.381 2.54 0.00 45.72 4.18
3182 7746 5.571277 TGAACATAATCATTGCACACATCG 58.429 37.500 0.00 0.00 0.00 3.84
3205 7769 8.610035 GGTTTTTAGAAATAAGCGTACTATGCT 58.390 33.333 0.00 0.00 43.43 3.79
3214 7778 5.465935 TGCAAGGGTTTTTAGAAATAAGCG 58.534 37.500 0.00 0.00 0.00 4.68
3225 7789 5.813513 ATGAGAGAAATGCAAGGGTTTTT 57.186 34.783 0.00 0.00 0.00 1.94
3252 7816 2.492088 CTCATAGTGTTGGTCCGAGTCA 59.508 50.000 0.00 0.00 0.00 3.41
3258 7822 2.359900 CCTTGCTCATAGTGTTGGTCC 58.640 52.381 0.00 0.00 0.00 4.46
3362 7931 0.750850 GATGCATTGGAGCTTGGCAT 59.249 50.000 0.00 10.07 46.91 4.40
3365 7934 3.118920 TGAATTGATGCATTGGAGCTTGG 60.119 43.478 0.00 0.00 34.99 3.61
3367 7936 4.464951 TCTTGAATTGATGCATTGGAGCTT 59.535 37.500 0.00 0.00 34.99 3.74
3397 8162 8.378565 TCTCTATCAGAAAGAATTTGGAACACT 58.621 33.333 0.00 0.00 39.27 3.55
3433 8198 0.655733 GGCGACCCATATGTTGTTCG 59.344 55.000 1.24 5.24 33.96 3.95
3489 8254 1.279271 GAGAAGAGGCTGGCCAAACTA 59.721 52.381 7.01 0.00 38.92 2.24
3521 8286 6.376018 GCTCGTCCTTAGAATAGAGTATGGAT 59.624 42.308 0.00 0.00 0.00 3.41
3605 8371 1.597027 CACGGGGCGATTGATACCC 60.597 63.158 0.00 0.00 43.44 3.69
3633 8399 1.102978 GGCAAGTATTCCATGGCGTT 58.897 50.000 6.96 0.00 0.00 4.84
3662 8428 4.034048 ACCGACGATATTGTTTGCAAGATC 59.966 41.667 0.00 5.25 45.07 2.75
3668 8434 5.151632 ACATTACCGACGATATTGTTTGC 57.848 39.130 0.00 0.00 0.00 3.68
3685 8451 1.206849 TGCAGCTCCACGATGACATTA 59.793 47.619 0.00 0.00 0.00 1.90
3724 8495 5.452078 AACCCACATTACACAATTCAGTG 57.548 39.130 0.00 0.00 44.93 3.66
3725 8496 5.475564 GGTAACCCACATTACACAATTCAGT 59.524 40.000 0.00 0.00 36.87 3.41
3726 8497 5.475220 TGGTAACCCACATTACACAATTCAG 59.525 40.000 0.00 0.00 36.87 3.02
3727 8498 5.386060 TGGTAACCCACATTACACAATTCA 58.614 37.500 0.00 0.00 36.87 2.57
3761 8533 1.667724 CTCACGAAGATTGACATGGCC 59.332 52.381 0.00 0.00 0.00 5.36
3777 8549 1.200948 GCATGACCTTTCTTGGCTCAC 59.799 52.381 0.00 0.00 0.00 3.51
3812 8736 3.002102 GCCAAGCCAAATGTTATTGTGG 58.998 45.455 0.00 0.00 30.89 4.17
3903 8827 1.392710 CGGGCGTGGACCTCTTCTAT 61.393 60.000 0.00 0.00 0.00 1.98
3940 8864 1.705002 CGGGCATGGGTAGGATTGGA 61.705 60.000 0.00 0.00 0.00 3.53
4073 11140 3.274288 GGTTTTTGGTGGTCAATGCAAA 58.726 40.909 0.00 0.00 34.98 3.68
4089 11156 2.357952 GGAGAAGCTTCAACACGGTTTT 59.642 45.455 27.57 3.15 0.00 2.43
4095 11162 0.868406 CGGTGGAGAAGCTTCAACAC 59.132 55.000 30.14 30.14 36.20 3.32
4143 11210 1.555075 AGGCAATCTACCACATCACGT 59.445 47.619 0.00 0.00 0.00 4.49
4169 11236 0.813184 CTTGTCAAAGCGATGCCCAT 59.187 50.000 0.00 0.00 0.00 4.00
4174 11241 0.169672 CTGCCCTTGTCAAAGCGATG 59.830 55.000 0.00 0.00 31.51 3.84
4176 11243 2.260869 GCTGCCCTTGTCAAAGCGA 61.261 57.895 0.00 0.00 31.51 4.93
4225 11292 0.690762 GTGGGTAAGCTTGTCCCTGA 59.309 55.000 29.09 15.82 41.58 3.86
4280 11348 0.391130 TCTGTCTATGCACCGTTGGC 60.391 55.000 0.00 0.00 0.00 4.52
4300 11368 4.262207 CCGCATGATATATCTCGGGCTATT 60.262 45.833 22.50 0.00 34.13 1.73
4301 11369 3.256879 CCGCATGATATATCTCGGGCTAT 59.743 47.826 22.50 4.45 34.13 2.97
4321 11389 1.078426 CCAAGTAGGCCACCTTCCG 60.078 63.158 5.01 0.00 34.61 4.30
4351 11419 1.264288 CAAACTTGACAAGGTCCTCGC 59.736 52.381 19.16 0.00 0.00 5.03
4370 11438 2.485302 CCCATCCGATGCACTAACATCA 60.485 50.000 2.53 0.00 45.56 3.07
4376 11444 3.562250 CCCCCATCCGATGCACTA 58.438 61.111 2.53 0.00 0.00 2.74
4425 11493 1.228124 TTTGGGGAGGTCACAAGCG 60.228 57.895 0.00 0.00 0.00 4.68
4490 11558 2.877974 GACGCGACGCTTTTGTGGT 61.878 57.895 15.93 6.11 0.00 4.16
4499 11567 1.278172 ATATGCAGATGACGCGACGC 61.278 55.000 15.93 10.49 0.00 5.19
4500 11568 1.963747 TATATGCAGATGACGCGACG 58.036 50.000 15.93 0.00 0.00 5.12
4527 11595 1.379642 GGAGGGCAGCTTTCATTCGG 61.380 60.000 0.00 0.00 0.00 4.30
4554 11622 1.545875 CGTCGGGACTATCTCCATCCT 60.546 57.143 0.00 0.00 41.63 3.24
4573 11641 1.600013 CCTCCTAGACATCGACACTCG 59.400 57.143 0.00 0.00 42.10 4.18
4579 11647 3.646736 TCAGAACCTCCTAGACATCGA 57.353 47.619 0.00 0.00 0.00 3.59
4587 11655 2.180276 GACCTGCTTCAGAACCTCCTA 58.820 52.381 0.00 0.00 32.44 2.94
4615 11684 1.072331 TCTCTCCACTTCCCTTTGTGC 59.928 52.381 0.00 0.00 33.26 4.57
4631 11700 0.690411 CCCATGGAGACCTGCTCTCT 60.690 60.000 15.22 0.00 44.63 3.10
4638 11707 1.575447 GGCCTTTCCCATGGAGACCT 61.575 60.000 15.22 0.00 31.21 3.85
4649 11718 2.280079 CATGGGAGGGGCCTTTCC 59.720 66.667 5.89 5.89 36.66 3.13
4803 11873 4.748701 AGTTAGACACCAGGAAGACCTTA 58.251 43.478 0.00 0.00 45.36 2.69
4813 11883 8.622948 ATTCTCCTTTTTAAGTTAGACACCAG 57.377 34.615 0.00 0.00 0.00 4.00
4837 11907 3.230134 TGCACAGGTTAAAGAAGCCAAT 58.770 40.909 0.00 0.00 33.30 3.16
4898 11968 4.936891 TGTCATCAAGTCATGGAGTATCG 58.063 43.478 0.00 0.00 34.37 2.92
4919 11989 2.205022 TTCCAGGATCCAAAGTGCTG 57.795 50.000 15.82 0.78 35.13 4.41
5002 12072 5.180680 CCTATTAGTATCATCGACACGACCA 59.819 44.000 0.00 0.00 39.18 4.02
5076 12146 1.338769 GGTCAACTAGGCCAACATCGT 60.339 52.381 5.01 0.00 43.39 3.73
5088 12158 1.071699 GCACTTCCAGTGGGTCAACTA 59.928 52.381 9.92 0.00 46.01 2.24
5140 12211 1.579964 CGTCGGGCCCAAAGGTTTAC 61.580 60.000 24.92 5.10 34.57 2.01
5153 12224 1.153628 CTAAGGACAAGGCGTCGGG 60.154 63.158 0.00 0.00 46.42 5.14
5180 12252 0.737219 GAGGTCACTGATGCCATTGC 59.263 55.000 0.00 0.00 38.26 3.56
5232 12304 1.597742 AGACTTCACGCAATGCAACT 58.402 45.000 5.91 0.00 0.00 3.16
5254 12326 3.384467 CGCATAATTTCAATTGGGAGGGT 59.616 43.478 5.42 0.00 0.00 4.34
5328 12400 4.141551 TGGTCCATCATGATGAGAAAGAGG 60.142 45.833 32.71 16.11 41.20 3.69
5425 12935 5.595885 ACATCAAGAGATTATCAGGTGTCG 58.404 41.667 0.00 0.00 27.02 4.35
5442 12952 1.262417 TACTGGGCTCGTGACATCAA 58.738 50.000 0.00 0.00 0.00 2.57
5445 12955 2.501723 AGATTTACTGGGCTCGTGACAT 59.498 45.455 0.00 0.00 0.00 3.06
5494 13011 4.674101 GCAGACAGAGTAGAGACATGTGTC 60.674 50.000 14.93 14.93 45.08 3.67
5495 13012 3.192422 GCAGACAGAGTAGAGACATGTGT 59.808 47.826 1.15 0.00 30.38 3.72
5496 13013 3.192212 TGCAGACAGAGTAGAGACATGTG 59.808 47.826 1.15 0.00 30.38 3.21
5497 13014 3.425659 TGCAGACAGAGTAGAGACATGT 58.574 45.455 0.00 0.00 32.25 3.21
5641 13158 0.651031 GCCGACTAACGAATGGCTTC 59.349 55.000 0.00 0.00 45.77 3.86
5657 13174 1.349627 CACTGCAGATTAAGCGCCG 59.650 57.895 23.35 2.38 33.85 6.46
5701 13222 5.534278 TGTTCATCCAGTTTTTGTCATGCTA 59.466 36.000 0.00 0.00 0.00 3.49
5726 13247 9.852091 ATGCTTTTTCATTCTTTCTACTCAATC 57.148 29.630 0.00 0.00 0.00 2.67
5879 13470 3.249917 CACCGAAATTTGTTATGCACCC 58.750 45.455 0.00 0.00 0.00 4.61
6051 13642 2.241281 TCCCGATTTCTAGGACACCA 57.759 50.000 0.00 0.00 0.00 4.17
6060 13651 3.412386 CTTTTCTGTGGTCCCGATTTCT 58.588 45.455 0.00 0.00 0.00 2.52
6157 13759 6.235231 TCCCTGATTTGTCCTCATAGTTAC 57.765 41.667 0.00 0.00 0.00 2.50
6163 13765 6.973642 TCTATTTTCCCTGATTTGTCCTCAT 58.026 36.000 0.00 0.00 0.00 2.90
6170 13772 5.298777 CAGAGCCTCTATTTTCCCTGATTTG 59.701 44.000 0.00 0.00 0.00 2.32
6214 13816 2.355513 CCATGTCTTCCTCCACCTGAAG 60.356 54.545 0.00 0.00 39.44 3.02
6292 13894 2.421952 GGTTGGAATGGCAGATGCTAGA 60.422 50.000 4.59 0.00 41.70 2.43
6330 13932 1.336440 TGCGTTTGGAATGACTGTTGG 59.664 47.619 0.00 0.00 0.00 3.77
6348 13950 0.321122 CAGTGGGTGTCTTCCTCTGC 60.321 60.000 0.00 0.00 38.51 4.26
6450 14055 4.719369 GAACCCGACGCGCACTCT 62.719 66.667 5.73 0.00 0.00 3.24
6487 14140 2.094675 GCTCCCTGCATTATGTGTTGT 58.905 47.619 0.00 0.00 42.31 3.32
6530 14186 1.675483 CATCTCTCACCCTCTCTGACG 59.325 57.143 0.00 0.00 0.00 4.35
6570 14226 4.142038 CCATCAGCATTTGGATCTCATCA 58.858 43.478 0.00 0.00 34.81 3.07
6610 14266 4.994852 CCCATGCAAATTGGAATGATCATC 59.005 41.667 9.06 2.77 36.26 2.92
6611 14267 4.745478 GCCCATGCAAATTGGAATGATCAT 60.745 41.667 1.85 1.18 36.26 2.45
6637 14293 5.392380 CGTAGAGAAAATGCCAAGCTTCATT 60.392 40.000 7.40 7.40 34.66 2.57
6642 14298 3.334583 TCGTAGAGAAAATGCCAAGCT 57.665 42.857 0.00 0.00 0.00 3.74
6704 14360 9.091784 CAGATAAATCAAGAGAACGAGAAATGA 57.908 33.333 0.00 0.00 0.00 2.57
6726 14382 1.969923 GAGGTCAGATGCTAGCCAGAT 59.030 52.381 13.29 0.00 0.00 2.90
6747 14403 4.536090 TGGGATACAGAAAGGACATCAAGT 59.464 41.667 0.00 0.00 39.74 3.16
6822 14478 1.485397 CGATGCAGGATCAACGAGAG 58.515 55.000 2.47 0.00 34.76 3.20
6901 14557 4.141321 CCCATCTGGAGAATGAAGATTGGA 60.141 45.833 0.00 0.00 36.01 3.53
7028 14684 3.182472 ATCGTCGCACCTCGGATCG 62.182 63.158 0.00 0.00 39.05 3.69
7171 14833 2.363306 TTTGGCTGAGGATTGTGTGT 57.637 45.000 0.00 0.00 0.00 3.72
7181 14843 6.917533 ACATTACTGAATCTTTTTGGCTGAG 58.082 36.000 0.00 0.00 0.00 3.35
7205 14963 8.387354 CGTCTGAATTTGCAAACATATACTGTA 58.613 33.333 15.41 0.00 36.98 2.74
7206 14964 7.094805 ACGTCTGAATTTGCAAACATATACTGT 60.095 33.333 15.41 9.77 40.84 3.55
7207 14965 7.243487 ACGTCTGAATTTGCAAACATATACTG 58.757 34.615 15.41 9.24 0.00 2.74
7208 14966 7.334421 AGACGTCTGAATTTGCAAACATATACT 59.666 33.333 19.30 3.71 0.00 2.12
7377 15159 4.856801 CCCCTTCCATGCCCGTCG 62.857 72.222 0.00 0.00 0.00 5.12
7463 15257 4.704833 GCACCGGAGCTCCAGCAA 62.705 66.667 31.67 0.00 45.16 3.91
7592 15386 3.490759 CTGTACCTTGGCGCGCAG 61.491 66.667 34.42 22.34 0.00 5.18
7621 15444 4.627467 AGTAACGTTCAGACAGATGAATGC 59.373 41.667 2.82 0.00 45.91 3.56
7648 15471 3.508762 CAGCAAACAAGATTCCAGCATC 58.491 45.455 0.00 0.00 0.00 3.91
7676 15499 4.314440 TCCCTCACCTGCACGCAC 62.314 66.667 0.00 0.00 0.00 5.34
7680 15503 2.348998 CACCTCCCTCACCTGCAC 59.651 66.667 0.00 0.00 0.00 4.57
7757 15580 1.352017 TGTTGCACATCCACTCATCCT 59.648 47.619 0.00 0.00 0.00 3.24
7782 15605 5.083122 AGGCTGATGACATATGCTACTACT 58.917 41.667 1.58 0.00 0.00 2.57
7787 15613 2.568956 GGGAGGCTGATGACATATGCTA 59.431 50.000 1.58 0.00 0.00 3.49
7788 15614 1.350351 GGGAGGCTGATGACATATGCT 59.650 52.381 1.58 0.00 0.00 3.79
7789 15615 1.612726 GGGGAGGCTGATGACATATGC 60.613 57.143 1.58 4.16 0.00 3.14
7807 15633 1.942657 CGACACATAAGCATCAAGGGG 59.057 52.381 0.00 0.00 0.00 4.79
7823 15649 3.886505 ACAAAGGGTGCTTTTTATCGACA 59.113 39.130 0.00 0.00 0.00 4.35
7876 15720 7.710907 TGTTGATATGTATGAACAGAGGCTAAC 59.289 37.037 1.68 0.00 39.49 2.34
7928 15777 2.305009 GGCAAAGCATCATCCTTAGCT 58.695 47.619 0.00 0.00 39.37 3.32
7931 15780 3.054139 AGACTGGCAAAGCATCATCCTTA 60.054 43.478 0.00 0.00 0.00 2.69
7981 15830 4.513198 TTTTCGGCAAAGGTGGAATAAG 57.487 40.909 0.00 0.00 0.00 1.73
7987 15836 3.586430 CCTTTTTCGGCAAAGGTGG 57.414 52.632 14.82 2.13 45.56 4.61
8375 16232 7.011109 TCCGTAATAAGCTTGTTATTCAGAAGC 59.989 37.037 17.31 0.00 36.79 3.86
8732 16589 1.379309 GCCCCGGAACCATTTAGCA 60.379 57.895 0.73 0.00 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.