Multiple sequence alignment - TraesCS1A01G102000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G102000 chr1A 100.000 2986 0 0 1 2986 98023699 98020714 0.000000e+00 5515
1 TraesCS1A01G102000 chr1A 100.000 308 0 0 1648 1955 309691854 309691547 1.200000e-158 569
2 TraesCS1A01G102000 chr1A 99.344 305 2 0 1649 1953 282546227 282546531 1.210000e-153 553
3 TraesCS1A01G102000 chr1D 89.191 1693 111 36 1 1647 79171289 79169623 0.000000e+00 2047
4 TraesCS1A01G102000 chr1D 94.229 849 33 6 2140 2986 79169453 79168619 0.000000e+00 1282
5 TraesCS1A01G102000 chr1B 93.374 981 47 8 2013 2986 130361519 130360550 0.000000e+00 1435
6 TraesCS1A01G102000 chr1B 90.194 826 46 16 667 1467 130362574 130361759 0.000000e+00 1044
7 TraesCS1A01G102000 chr1B 93.675 664 42 0 1 664 130364085 130363422 0.000000e+00 994
8 TraesCS1A01G102000 chr2B 98.447 322 4 1 1639 1959 140789968 140790289 1.550000e-157 566
9 TraesCS1A01G102000 chr2A 99.048 315 3 0 1645 1959 32504938 32505252 1.550000e-157 566
10 TraesCS1A01G102000 chr7B 99.038 312 1 2 1644 1954 11940146 11939836 2.600000e-155 558
11 TraesCS1A01G102000 chr7B 98.403 313 4 1 1643 1954 462883217 462882905 1.560000e-152 549
12 TraesCS1A01G102000 chr3A 98.722 313 3 1 1643 1954 51751573 51751885 3.360000e-154 555
13 TraesCS1A01G102000 chrUn 99.029 309 2 1 1648 1956 301838175 301837868 1.210000e-153 553
14 TraesCS1A01G102000 chr4B 98.397 312 4 1 1644 1954 385922982 385922671 5.630000e-152 547


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G102000 chr1A 98020714 98023699 2985 True 5515.000000 5515 100.000000 1 2986 1 chr1A.!!$R1 2985
1 TraesCS1A01G102000 chr1D 79168619 79171289 2670 True 1664.500000 2047 91.710000 1 2986 2 chr1D.!!$R1 2985
2 TraesCS1A01G102000 chr1B 130360550 130364085 3535 True 1157.666667 1435 92.414333 1 2986 3 chr1B.!!$R1 2985

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
876 1725 0.586802 GGCAAGCCGGTAATTCGATC 59.413 55.0 1.9 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2091 3041 0.243365 TGATTTCGCAATGGGTGTGC 59.757 50.0 0.0 0.0 37.67 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
477 478 1.376553 GAGCTTCCCTGCAGTGTCC 60.377 63.158 13.81 0.00 34.99 4.02
479 480 2.743718 CTTCCCTGCAGTGTCCGT 59.256 61.111 13.81 0.00 0.00 4.69
572 573 2.947542 CGAGATCTAGACGCCGGG 59.052 66.667 2.18 0.00 0.00 5.73
614 617 1.543941 CTTGGCGAGCGATCGATGTC 61.544 60.000 29.29 12.76 34.64 3.06
627 630 1.796796 GATGTCGGCTTTGGCAGTC 59.203 57.895 0.00 0.00 40.87 3.51
649 652 1.003580 ACTTGTTCTCATGGCGATGGT 59.996 47.619 8.98 0.00 0.00 3.55
653 656 0.617935 TTCTCATGGCGATGGTGGAA 59.382 50.000 8.98 8.33 0.00 3.53
713 1561 3.334691 CTCCTTCCTTGACGTGCATTAA 58.665 45.455 0.00 0.00 0.00 1.40
763 1611 5.050227 CGTGGTATGTTCTTGTTCGGTTTTA 60.050 40.000 0.00 0.00 0.00 1.52
876 1725 0.586802 GGCAAGCCGGTAATTCGATC 59.413 55.000 1.90 0.00 0.00 3.69
904 1753 2.278142 ACGTTACGTATCGGCCGC 60.278 61.111 23.51 5.56 38.73 6.53
925 1774 1.299850 CGCACGATCCTATTCCGCA 60.300 57.895 0.00 0.00 0.00 5.69
1003 1860 2.098298 CTGCACACGCCGCATTAC 59.902 61.111 0.00 0.00 39.02 1.89
1004 1861 2.666526 TGCACACGCCGCATTACA 60.667 55.556 0.00 0.00 37.32 2.41
1006 1863 1.081774 GCACACGCCGCATTACAAA 60.082 52.632 0.00 0.00 0.00 2.83
1007 1864 0.455972 GCACACGCCGCATTACAAAT 60.456 50.000 0.00 0.00 0.00 2.32
1044 1901 1.134068 GGTTAGCCCATTGACTCCTCC 60.134 57.143 0.00 0.00 0.00 4.30
1055 1912 2.108566 CTCCTCCATCGCCTGCAG 59.891 66.667 6.78 6.78 0.00 4.41
1056 1913 4.166888 TCCTCCATCGCCTGCAGC 62.167 66.667 8.66 2.87 38.52 5.25
1070 1927 2.569657 CAGCCCTGCACGTACGTA 59.430 61.111 22.34 5.54 0.00 3.57
1071 1928 1.804326 CAGCCCTGCACGTACGTAC 60.804 63.158 22.34 16.78 0.00 3.67
1081 1957 2.656328 GTACGTACGATGGCGGCC 60.656 66.667 24.41 13.32 43.17 6.13
1314 2191 3.089874 CCTCATGAGCCGGGGGAA 61.090 66.667 17.76 0.00 0.00 3.97
1367 2249 3.771160 GTCCCATCGACCGCACCT 61.771 66.667 0.00 0.00 35.23 4.00
1377 2259 1.912371 GACCGCACCTTACTTGCAGC 61.912 60.000 0.00 0.00 40.20 5.25
1379 2261 2.176792 GCACCTTACTTGCAGCGC 59.823 61.111 0.00 0.00 39.93 5.92
1380 2262 2.328099 GCACCTTACTTGCAGCGCT 61.328 57.895 2.64 2.64 39.93 5.92
1381 2263 1.856265 GCACCTTACTTGCAGCGCTT 61.856 55.000 7.50 0.00 39.93 4.68
1429 2311 6.653526 TCTTGATTCTTTTCATGCCTTTGA 57.346 33.333 0.00 0.00 0.00 2.69
1439 2321 5.759506 TTCATGCCTTTGAAAGAAACGTA 57.240 34.783 6.49 0.00 32.82 3.57
1443 2325 6.653320 TCATGCCTTTGAAAGAAACGTATAGT 59.347 34.615 6.49 0.00 0.00 2.12
1444 2326 7.820386 TCATGCCTTTGAAAGAAACGTATAGTA 59.180 33.333 6.49 0.00 0.00 1.82
1445 2327 7.355332 TGCCTTTGAAAGAAACGTATAGTAC 57.645 36.000 6.49 0.00 0.00 2.73
1475 2390 4.832248 TGTGATGGCGTCTCTTAATTCTT 58.168 39.130 8.40 0.00 0.00 2.52
1476 2391 5.245531 TGTGATGGCGTCTCTTAATTCTTT 58.754 37.500 8.40 0.00 0.00 2.52
1502 2417 8.721478 TGAAAAGATTGCATTTCACTACTACTC 58.279 33.333 8.73 0.00 39.81 2.59
1504 2419 6.552445 AGATTGCATTTCACTACTACTCCT 57.448 37.500 0.00 0.00 0.00 3.69
1505 2420 7.661536 AGATTGCATTTCACTACTACTCCTA 57.338 36.000 0.00 0.00 0.00 2.94
1506 2421 7.493367 AGATTGCATTTCACTACTACTCCTAC 58.507 38.462 0.00 0.00 0.00 3.18
1507 2422 6.852420 TTGCATTTCACTACTACTCCTACT 57.148 37.500 0.00 0.00 0.00 2.57
1508 2423 6.852420 TGCATTTCACTACTACTCCTACTT 57.148 37.500 0.00 0.00 0.00 2.24
1509 2424 6.864342 TGCATTTCACTACTACTCCTACTTC 58.136 40.000 0.00 0.00 0.00 3.01
1510 2425 6.436218 TGCATTTCACTACTACTCCTACTTCA 59.564 38.462 0.00 0.00 0.00 3.02
1511 2426 7.124298 TGCATTTCACTACTACTCCTACTTCAT 59.876 37.037 0.00 0.00 0.00 2.57
1512 2427 7.982354 GCATTTCACTACTACTCCTACTTCATT 59.018 37.037 0.00 0.00 0.00 2.57
1513 2428 9.522804 CATTTCACTACTACTCCTACTTCATTC 57.477 37.037 0.00 0.00 0.00 2.67
1522 2437 4.697352 ACTCCTACTTCATTCATGTGTTGC 59.303 41.667 0.00 0.00 0.00 4.17
1557 2499 5.014333 TGCTTAACTGGGATTGGTACCTTTA 59.986 40.000 14.36 0.00 0.00 1.85
1606 2553 3.660970 TGGCTTAACATGGCTCCAATA 57.339 42.857 0.00 0.00 0.00 1.90
1647 2594 7.712797 TGGTAAGCCAGAAAAGAAAAACTAAG 58.287 34.615 0.00 0.00 40.46 2.18
1648 2595 6.641314 GGTAAGCCAGAAAAGAAAAACTAAGC 59.359 38.462 0.00 0.00 34.09 3.09
1651 2598 5.010112 AGCCAGAAAAGAAAAACTAAGCCTC 59.990 40.000 0.00 0.00 0.00 4.70
1652 2599 5.773575 CCAGAAAAGAAAAACTAAGCCTCC 58.226 41.667 0.00 0.00 0.00 4.30
1653 2600 5.536538 CCAGAAAAGAAAAACTAAGCCTCCT 59.463 40.000 0.00 0.00 0.00 3.69
1654 2601 6.040955 CCAGAAAAGAAAAACTAAGCCTCCTT 59.959 38.462 0.00 0.00 35.05 3.36
1655 2602 7.417911 CCAGAAAAGAAAAACTAAGCCTCCTTT 60.418 37.037 0.00 0.00 32.47 3.11
1656 2603 7.436376 CAGAAAAGAAAAACTAAGCCTCCTTTG 59.564 37.037 0.00 0.00 32.47 2.77
1657 2604 5.791336 AAGAAAAACTAAGCCTCCTTTGG 57.209 39.130 0.00 0.00 32.47 3.28
1658 2605 4.804597 AGAAAAACTAAGCCTCCTTTGGT 58.195 39.130 0.00 0.00 32.47 3.67
1659 2606 5.208890 AGAAAAACTAAGCCTCCTTTGGTT 58.791 37.500 0.00 0.00 35.67 3.67
1660 2607 5.661312 AGAAAAACTAAGCCTCCTTTGGTTT 59.339 36.000 0.00 0.00 42.66 3.27
1661 2608 4.937201 AAACTAAGCCTCCTTTGGTTTG 57.063 40.909 0.00 0.00 35.98 2.93
1662 2609 2.876581 ACTAAGCCTCCTTTGGTTTGG 58.123 47.619 0.00 0.00 35.54 3.28
1663 2610 2.445525 ACTAAGCCTCCTTTGGTTTGGA 59.554 45.455 0.00 0.00 34.08 3.53
1664 2611 2.001076 AAGCCTCCTTTGGTTTGGAG 57.999 50.000 0.00 0.00 46.91 3.86
1671 2618 5.551305 CTCCTTTGGTTTGGAGGAATTTT 57.449 39.130 0.00 0.00 44.44 1.82
1672 2619 5.289083 TCCTTTGGTTTGGAGGAATTTTG 57.711 39.130 0.00 0.00 36.67 2.44
1673 2620 4.719273 TCCTTTGGTTTGGAGGAATTTTGT 59.281 37.500 0.00 0.00 36.67 2.83
1674 2621 5.900123 TCCTTTGGTTTGGAGGAATTTTGTA 59.100 36.000 0.00 0.00 36.67 2.41
1675 2622 6.041523 TCCTTTGGTTTGGAGGAATTTTGTAG 59.958 38.462 0.00 0.00 36.67 2.74
1676 2623 5.799827 TTGGTTTGGAGGAATTTTGTAGG 57.200 39.130 0.00 0.00 0.00 3.18
1677 2624 5.068215 TGGTTTGGAGGAATTTTGTAGGA 57.932 39.130 0.00 0.00 0.00 2.94
1678 2625 5.650283 TGGTTTGGAGGAATTTTGTAGGAT 58.350 37.500 0.00 0.00 0.00 3.24
1679 2626 6.081356 TGGTTTGGAGGAATTTTGTAGGATT 58.919 36.000 0.00 0.00 0.00 3.01
1680 2627 6.556874 TGGTTTGGAGGAATTTTGTAGGATTT 59.443 34.615 0.00 0.00 0.00 2.17
1681 2628 7.071824 TGGTTTGGAGGAATTTTGTAGGATTTT 59.928 33.333 0.00 0.00 0.00 1.82
1682 2629 7.602644 GGTTTGGAGGAATTTTGTAGGATTTTC 59.397 37.037 0.00 0.00 0.00 2.29
1683 2630 7.847711 TTGGAGGAATTTTGTAGGATTTTCA 57.152 32.000 0.00 0.00 0.00 2.69
1684 2631 8.434589 TTGGAGGAATTTTGTAGGATTTTCAT 57.565 30.769 0.00 0.00 0.00 2.57
1685 2632 9.540538 TTGGAGGAATTTTGTAGGATTTTCATA 57.459 29.630 0.00 0.00 0.00 2.15
1686 2633 9.189156 TGGAGGAATTTTGTAGGATTTTCATAG 57.811 33.333 0.00 0.00 0.00 2.23
1687 2634 8.633561 GGAGGAATTTTGTAGGATTTTCATAGG 58.366 37.037 0.00 0.00 0.00 2.57
1688 2635 9.408648 GAGGAATTTTGTAGGATTTTCATAGGA 57.591 33.333 0.00 0.00 0.00 2.94
1689 2636 9.942526 AGGAATTTTGTAGGATTTTCATAGGAT 57.057 29.630 0.00 0.00 0.00 3.24
1724 2671 5.973899 GGAAAAATTCCTTCAGAGCTCTT 57.026 39.130 15.27 0.00 46.57 2.85
1725 2672 6.338214 GGAAAAATTCCTTCAGAGCTCTTT 57.662 37.500 15.27 1.02 46.57 2.52
1726 2673 6.155136 GGAAAAATTCCTTCAGAGCTCTTTG 58.845 40.000 15.27 4.87 46.57 2.77
1727 2674 5.718724 AAAATTCCTTCAGAGCTCTTTGG 57.281 39.130 15.27 15.93 0.00 3.28
1728 2675 4.379302 AATTCCTTCAGAGCTCTTTGGT 57.621 40.909 15.27 0.00 0.00 3.67
1729 2676 3.864789 TTCCTTCAGAGCTCTTTGGTT 57.135 42.857 15.27 0.00 0.00 3.67
1730 2677 3.864789 TCCTTCAGAGCTCTTTGGTTT 57.135 42.857 15.27 0.00 0.00 3.27
1731 2678 3.480470 TCCTTCAGAGCTCTTTGGTTTG 58.520 45.455 15.27 1.50 0.00 2.93
1732 2679 3.117888 TCCTTCAGAGCTCTTTGGTTTGT 60.118 43.478 15.27 0.00 31.30 2.83
1733 2680 4.102524 TCCTTCAGAGCTCTTTGGTTTGTA 59.897 41.667 15.27 0.00 31.30 2.41
1734 2681 4.453819 CCTTCAGAGCTCTTTGGTTTGTAG 59.546 45.833 15.27 5.08 31.30 2.74
1735 2682 4.008074 TCAGAGCTCTTTGGTTTGTAGG 57.992 45.455 15.27 0.00 31.30 3.18
1736 2683 3.646162 TCAGAGCTCTTTGGTTTGTAGGA 59.354 43.478 15.27 0.20 31.30 2.94
1737 2684 4.102524 TCAGAGCTCTTTGGTTTGTAGGAA 59.897 41.667 15.27 0.00 31.30 3.36
1738 2685 5.006386 CAGAGCTCTTTGGTTTGTAGGAAT 58.994 41.667 15.27 0.00 0.00 3.01
1739 2686 5.006386 AGAGCTCTTTGGTTTGTAGGAATG 58.994 41.667 11.45 0.00 0.00 2.67
1740 2687 4.985538 AGCTCTTTGGTTTGTAGGAATGA 58.014 39.130 0.00 0.00 0.00 2.57
1741 2688 5.385198 AGCTCTTTGGTTTGTAGGAATGAA 58.615 37.500 0.00 0.00 0.00 2.57
1742 2689 5.833131 AGCTCTTTGGTTTGTAGGAATGAAA 59.167 36.000 0.00 0.00 0.00 2.69
1743 2690 6.494835 AGCTCTTTGGTTTGTAGGAATGAAAT 59.505 34.615 0.00 0.00 0.00 2.17
1744 2691 6.808704 GCTCTTTGGTTTGTAGGAATGAAATC 59.191 38.462 0.00 0.00 0.00 2.17
1745 2692 7.227049 TCTTTGGTTTGTAGGAATGAAATCC 57.773 36.000 0.00 0.00 39.96 3.01
1759 2706 7.115414 GGAATGAAATCCTATTCCTATGGAGG 58.885 42.308 8.37 0.00 45.66 4.30
1760 2707 7.037297 GGAATGAAATCCTATTCCTATGGAGGA 60.037 40.741 8.37 0.00 45.66 3.71
1780 2727 5.574970 GGAATTCTTCCTATCCTCCACAT 57.425 43.478 5.23 0.00 46.57 3.21
1781 2728 5.946486 GGAATTCTTCCTATCCTCCACATT 58.054 41.667 5.23 0.00 46.57 2.71
1782 2729 6.368805 GGAATTCTTCCTATCCTCCACATTT 58.631 40.000 5.23 0.00 46.57 2.32
1783 2730 6.488344 GGAATTCTTCCTATCCTCCACATTTC 59.512 42.308 5.23 0.00 46.57 2.17
1784 2731 6.581388 ATTCTTCCTATCCTCCACATTTCA 57.419 37.500 0.00 0.00 0.00 2.69
1785 2732 6.581388 TTCTTCCTATCCTCCACATTTCAT 57.419 37.500 0.00 0.00 0.00 2.57
1786 2733 7.690454 TTCTTCCTATCCTCCACATTTCATA 57.310 36.000 0.00 0.00 0.00 2.15
1787 2734 7.308450 TCTTCCTATCCTCCACATTTCATAG 57.692 40.000 0.00 0.00 0.00 2.23
1788 2735 6.270927 TCTTCCTATCCTCCACATTTCATAGG 59.729 42.308 0.00 0.00 35.93 2.57
1789 2736 5.726560 TCCTATCCTCCACATTTCATAGGA 58.273 41.667 2.01 2.01 39.61 2.94
1790 2737 6.150332 TCCTATCCTCCACATTTCATAGGAA 58.850 40.000 3.47 0.00 39.17 3.36
1791 2738 6.619437 TCCTATCCTCCACATTTCATAGGAAA 59.381 38.462 4.85 4.85 46.36 3.13
1792 2739 7.128728 TCCTATCCTCCACATTTCATAGGAAAA 59.871 37.037 6.65 0.00 45.52 2.29
1793 2740 7.229506 CCTATCCTCCACATTTCATAGGAAAAC 59.770 40.741 6.65 0.00 45.52 2.43
1794 2741 5.886609 TCCTCCACATTTCATAGGAAAACA 58.113 37.500 6.65 0.00 45.52 2.83
1795 2742 6.310941 TCCTCCACATTTCATAGGAAAACAA 58.689 36.000 6.65 0.00 45.52 2.83
1796 2743 6.780031 TCCTCCACATTTCATAGGAAAACAAA 59.220 34.615 6.65 0.00 45.52 2.83
1797 2744 6.868339 CCTCCACATTTCATAGGAAAACAAAC 59.132 38.462 6.65 0.00 45.52 2.93
1798 2745 7.353414 TCCACATTTCATAGGAAAACAAACA 57.647 32.000 6.65 0.00 45.52 2.83
1799 2746 7.961351 TCCACATTTCATAGGAAAACAAACAT 58.039 30.769 6.65 0.00 45.52 2.71
1800 2747 8.428063 TCCACATTTCATAGGAAAACAAACATT 58.572 29.630 6.65 0.00 45.52 2.71
1801 2748 9.703892 CCACATTTCATAGGAAAACAAACATTA 57.296 29.630 6.65 0.00 45.52 1.90
1803 2750 9.423061 ACATTTCATAGGAAAACAAACATTAGC 57.577 29.630 6.65 0.00 45.52 3.09
1804 2751 8.872845 CATTTCATAGGAAAACAAACATTAGCC 58.127 33.333 6.65 0.00 45.52 3.93
1805 2752 7.775053 TTCATAGGAAAACAAACATTAGCCT 57.225 32.000 0.00 0.00 0.00 4.58
1806 2753 8.871629 TTCATAGGAAAACAAACATTAGCCTA 57.128 30.769 0.00 0.00 0.00 3.93
1807 2754 8.506168 TCATAGGAAAACAAACATTAGCCTAG 57.494 34.615 0.00 0.00 31.03 3.02
1808 2755 8.325787 TCATAGGAAAACAAACATTAGCCTAGA 58.674 33.333 0.00 0.00 31.03 2.43
1809 2756 6.819397 AGGAAAACAAACATTAGCCTAGAC 57.181 37.500 0.00 0.00 0.00 2.59
1810 2757 6.543735 AGGAAAACAAACATTAGCCTAGACT 58.456 36.000 0.00 0.00 0.00 3.24
1811 2758 6.655425 AGGAAAACAAACATTAGCCTAGACTC 59.345 38.462 0.00 0.00 0.00 3.36
1812 2759 6.430000 GGAAAACAAACATTAGCCTAGACTCA 59.570 38.462 0.00 0.00 0.00 3.41
1813 2760 7.040686 GGAAAACAAACATTAGCCTAGACTCAA 60.041 37.037 0.00 0.00 0.00 3.02
1814 2761 8.409358 AAAACAAACATTAGCCTAGACTCAAT 57.591 30.769 0.00 0.00 0.00 2.57
1815 2762 6.992063 ACAAACATTAGCCTAGACTCAATG 57.008 37.500 0.00 0.00 33.75 2.82
1816 2763 5.882557 ACAAACATTAGCCTAGACTCAATGG 59.117 40.000 0.00 0.00 32.20 3.16
1817 2764 5.957771 AACATTAGCCTAGACTCAATGGA 57.042 39.130 0.00 0.00 32.20 3.41
1818 2765 5.957771 ACATTAGCCTAGACTCAATGGAA 57.042 39.130 0.00 0.00 32.20 3.53
1819 2766 6.313519 ACATTAGCCTAGACTCAATGGAAA 57.686 37.500 0.00 0.00 32.20 3.13
1820 2767 6.721318 ACATTAGCCTAGACTCAATGGAAAA 58.279 36.000 0.00 0.00 32.20 2.29
1821 2768 7.175104 ACATTAGCCTAGACTCAATGGAAAAA 58.825 34.615 0.00 0.00 32.20 1.94
1843 2790 6.780457 AAATCCTATGGTGTGAATCAAAGG 57.220 37.500 0.00 0.00 0.00 3.11
1844 2791 4.235079 TCCTATGGTGTGAATCAAAGGG 57.765 45.455 0.00 0.00 0.00 3.95
1845 2792 2.689983 CCTATGGTGTGAATCAAAGGGC 59.310 50.000 0.00 0.00 0.00 5.19
1846 2793 2.307496 ATGGTGTGAATCAAAGGGCA 57.693 45.000 0.00 0.00 0.00 5.36
1847 2794 2.307496 TGGTGTGAATCAAAGGGCAT 57.693 45.000 0.00 0.00 0.00 4.40
1848 2795 2.170166 TGGTGTGAATCAAAGGGCATC 58.830 47.619 0.00 0.00 0.00 3.91
1849 2796 2.225091 TGGTGTGAATCAAAGGGCATCT 60.225 45.455 0.00 0.00 0.00 2.90
1850 2797 2.424956 GGTGTGAATCAAAGGGCATCTC 59.575 50.000 0.00 0.00 0.00 2.75
1851 2798 3.350833 GTGTGAATCAAAGGGCATCTCT 58.649 45.455 0.00 0.00 0.00 3.10
1852 2799 3.760684 GTGTGAATCAAAGGGCATCTCTT 59.239 43.478 0.00 0.00 0.00 2.85
1853 2800 4.219288 GTGTGAATCAAAGGGCATCTCTTT 59.781 41.667 0.00 0.00 35.09 2.52
1854 2801 4.834496 TGTGAATCAAAGGGCATCTCTTTT 59.166 37.500 0.00 0.00 32.72 2.27
1855 2802 5.305128 TGTGAATCAAAGGGCATCTCTTTTT 59.695 36.000 0.00 0.00 32.72 1.94
1856 2803 5.866092 GTGAATCAAAGGGCATCTCTTTTTC 59.134 40.000 0.00 0.00 32.72 2.29
1857 2804 5.776716 TGAATCAAAGGGCATCTCTTTTTCT 59.223 36.000 5.65 0.00 32.72 2.52
1858 2805 6.947733 TGAATCAAAGGGCATCTCTTTTTCTA 59.052 34.615 5.65 0.00 32.72 2.10
1859 2806 7.616935 TGAATCAAAGGGCATCTCTTTTTCTAT 59.383 33.333 5.65 0.00 32.72 1.98
1860 2807 7.968014 ATCAAAGGGCATCTCTTTTTCTATT 57.032 32.000 0.00 0.00 32.72 1.73
1861 2808 7.396540 TCAAAGGGCATCTCTTTTTCTATTC 57.603 36.000 0.00 0.00 32.72 1.75
1862 2809 6.378280 TCAAAGGGCATCTCTTTTTCTATTCC 59.622 38.462 0.00 0.00 32.72 3.01
1863 2810 5.723860 AGGGCATCTCTTTTTCTATTCCT 57.276 39.130 0.00 0.00 0.00 3.36
1864 2811 6.831664 AGGGCATCTCTTTTTCTATTCCTA 57.168 37.500 0.00 0.00 0.00 2.94
1865 2812 7.399674 AGGGCATCTCTTTTTCTATTCCTAT 57.600 36.000 0.00 0.00 0.00 2.57
1866 2813 7.820532 AGGGCATCTCTTTTTCTATTCCTATT 58.179 34.615 0.00 0.00 0.00 1.73
1867 2814 8.285163 AGGGCATCTCTTTTTCTATTCCTATTT 58.715 33.333 0.00 0.00 0.00 1.40
1868 2815 9.574516 GGGCATCTCTTTTTCTATTCCTATTTA 57.425 33.333 0.00 0.00 0.00 1.40
1889 2836 8.929260 ATTTATAGGATTTGAGATGCATGTCA 57.071 30.769 21.70 21.70 0.00 3.58
1890 2837 8.929260 TTTATAGGATTTGAGATGCATGTCAT 57.071 30.769 25.41 13.07 38.32 3.06
1903 2850 6.819397 ATGCATGTCATCTCATTTCCTATG 57.181 37.500 0.00 0.00 0.00 2.23
1904 2851 5.932455 TGCATGTCATCTCATTTCCTATGA 58.068 37.500 0.00 0.00 0.00 2.15
1905 2852 5.761726 TGCATGTCATCTCATTTCCTATGAC 59.238 40.000 7.23 7.23 45.40 3.06
1906 2853 5.996513 GCATGTCATCTCATTTCCTATGACT 59.003 40.000 13.59 0.19 45.40 3.41
1907 2854 6.485984 GCATGTCATCTCATTTCCTATGACTT 59.514 38.462 13.59 6.42 45.40 3.01
1908 2855 7.013083 GCATGTCATCTCATTTCCTATGACTTT 59.987 37.037 13.59 1.75 45.40 2.66
1909 2856 8.557864 CATGTCATCTCATTTCCTATGACTTTC 58.442 37.037 13.59 0.00 45.40 2.62
1910 2857 7.050377 TGTCATCTCATTTCCTATGACTTTCC 58.950 38.462 13.59 0.00 45.40 3.13
1911 2858 7.092712 TGTCATCTCATTTCCTATGACTTTCCT 60.093 37.037 13.59 0.00 45.40 3.36
1912 2859 8.424918 GTCATCTCATTTCCTATGACTTTCCTA 58.575 37.037 0.00 0.00 43.07 2.94
1913 2860 9.163894 TCATCTCATTTCCTATGACTTTCCTAT 57.836 33.333 0.00 0.00 0.00 2.57
1914 2861 9.790344 CATCTCATTTCCTATGACTTTCCTATT 57.210 33.333 0.00 0.00 0.00 1.73
1916 2863 8.432805 TCTCATTTCCTATGACTTTCCTATTCC 58.567 37.037 0.00 0.00 0.00 3.01
1917 2864 8.337118 TCATTTCCTATGACTTTCCTATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
1918 2865 9.447279 TCATTTCCTATGACTTTCCTATTCCTA 57.553 33.333 0.00 0.00 0.00 2.94
1921 2868 9.447279 TTTCCTATGACTTTCCTATTCCTATGA 57.553 33.333 0.00 0.00 0.00 2.15
1922 2869 9.621239 TTCCTATGACTTTCCTATTCCTATGAT 57.379 33.333 0.00 0.00 0.00 2.45
1923 2870 9.621239 TCCTATGACTTTCCTATTCCTATGATT 57.379 33.333 0.00 0.00 0.00 2.57
1927 2874 8.980481 TGACTTTCCTATTCCTATGATTTTCC 57.020 34.615 0.00 0.00 0.00 3.13
1928 2875 8.556589 TGACTTTCCTATTCCTATGATTTTCCA 58.443 33.333 0.00 0.00 0.00 3.53
1929 2876 9.408648 GACTTTCCTATTCCTATGATTTTCCAA 57.591 33.333 0.00 0.00 0.00 3.53
1930 2877 9.942526 ACTTTCCTATTCCTATGATTTTCCAAT 57.057 29.630 0.00 0.00 0.00 3.16
1932 2879 8.940397 TTCCTATTCCTATGATTTTCCAATCC 57.060 34.615 0.00 0.00 38.50 3.01
1933 2880 8.293027 TCCTATTCCTATGATTTTCCAATCCT 57.707 34.615 0.00 0.00 38.50 3.24
1934 2881 9.405369 TCCTATTCCTATGATTTTCCAATCCTA 57.595 33.333 0.00 0.00 38.50 2.94
1939 2886 8.924511 TCCTATGATTTTCCAATCCTATGAAC 57.075 34.615 0.00 0.00 38.50 3.18
1940 2887 7.944554 TCCTATGATTTTCCAATCCTATGAACC 59.055 37.037 0.00 0.00 38.50 3.62
1941 2888 7.725397 CCTATGATTTTCCAATCCTATGAACCA 59.275 37.037 0.00 0.00 38.50 3.67
1942 2889 7.976414 ATGATTTTCCAATCCTATGAACCAA 57.024 32.000 0.00 0.00 38.50 3.67
1943 2890 7.789202 TGATTTTCCAATCCTATGAACCAAA 57.211 32.000 0.00 0.00 38.50 3.28
1944 2891 7.839907 TGATTTTCCAATCCTATGAACCAAAG 58.160 34.615 0.00 0.00 38.50 2.77
1945 2892 6.603940 TTTTCCAATCCTATGAACCAAAGG 57.396 37.500 0.00 0.00 0.00 3.11
1946 2893 5.528600 TTCCAATCCTATGAACCAAAGGA 57.471 39.130 0.00 0.00 43.38 3.36
1947 2894 5.116084 TCCAATCCTATGAACCAAAGGAG 57.884 43.478 0.00 0.00 42.53 3.69
1948 2895 4.079787 TCCAATCCTATGAACCAAAGGAGG 60.080 45.833 0.00 0.00 42.53 4.30
1949 2896 3.584733 ATCCTATGAACCAAAGGAGGC 57.415 47.619 0.00 0.00 42.53 4.70
1950 2897 1.564348 TCCTATGAACCAAAGGAGGCC 59.436 52.381 0.00 0.00 34.46 5.19
1951 2898 1.566231 CCTATGAACCAAAGGAGGCCT 59.434 52.381 3.86 3.86 33.87 5.19
1952 2899 2.777692 CCTATGAACCAAAGGAGGCCTA 59.222 50.000 4.42 0.00 31.13 3.93
1953 2900 3.202151 CCTATGAACCAAAGGAGGCCTAA 59.798 47.826 4.42 0.00 31.13 2.69
1954 2901 3.825908 ATGAACCAAAGGAGGCCTAAA 57.174 42.857 4.42 0.00 31.13 1.85
1955 2902 3.603965 TGAACCAAAGGAGGCCTAAAA 57.396 42.857 4.42 0.00 31.13 1.52
1956 2903 3.227614 TGAACCAAAGGAGGCCTAAAAC 58.772 45.455 4.42 0.00 31.13 2.43
1957 2904 3.117284 TGAACCAAAGGAGGCCTAAAACT 60.117 43.478 4.42 0.00 31.13 2.66
1958 2905 4.105057 TGAACCAAAGGAGGCCTAAAACTA 59.895 41.667 4.42 0.00 31.13 2.24
1959 2906 4.734843 ACCAAAGGAGGCCTAAAACTAA 57.265 40.909 4.42 0.00 31.13 2.24
1960 2907 5.270979 ACCAAAGGAGGCCTAAAACTAAT 57.729 39.130 4.42 0.00 31.13 1.73
1961 2908 5.016831 ACCAAAGGAGGCCTAAAACTAATG 58.983 41.667 4.42 5.27 31.13 1.90
1962 2909 4.142160 CCAAAGGAGGCCTAAAACTAATGC 60.142 45.833 4.42 0.00 31.13 3.56
1963 2910 4.592997 AAGGAGGCCTAAAACTAATGCT 57.407 40.909 4.42 0.00 31.13 3.79
1964 2911 5.710409 AAGGAGGCCTAAAACTAATGCTA 57.290 39.130 4.42 0.00 31.13 3.49
1965 2912 5.037383 AGGAGGCCTAAAACTAATGCTAC 57.963 43.478 4.42 0.00 28.47 3.58
1966 2913 4.135306 GGAGGCCTAAAACTAATGCTACC 58.865 47.826 4.42 0.00 0.00 3.18
1967 2914 4.141459 GGAGGCCTAAAACTAATGCTACCT 60.141 45.833 4.42 0.00 0.00 3.08
1968 2915 5.037383 AGGCCTAAAACTAATGCTACCTC 57.963 43.478 1.29 0.00 0.00 3.85
1969 2916 4.722279 AGGCCTAAAACTAATGCTACCTCT 59.278 41.667 1.29 0.00 0.00 3.69
1970 2917 4.816925 GGCCTAAAACTAATGCTACCTCTG 59.183 45.833 0.00 0.00 0.00 3.35
1971 2918 5.429130 GCCTAAAACTAATGCTACCTCTGT 58.571 41.667 0.00 0.00 0.00 3.41
1972 2919 6.407752 GGCCTAAAACTAATGCTACCTCTGTA 60.408 42.308 0.00 0.00 0.00 2.74
1973 2920 7.046033 GCCTAAAACTAATGCTACCTCTGTAA 58.954 38.462 0.00 0.00 0.00 2.41
1974 2921 7.011202 GCCTAAAACTAATGCTACCTCTGTAAC 59.989 40.741 0.00 0.00 0.00 2.50
1975 2922 8.038944 CCTAAAACTAATGCTACCTCTGTAACA 58.961 37.037 0.00 0.00 0.00 2.41
1976 2923 9.431887 CTAAAACTAATGCTACCTCTGTAACAA 57.568 33.333 0.00 0.00 0.00 2.83
1977 2924 8.863872 AAAACTAATGCTACCTCTGTAACAAT 57.136 30.769 0.00 0.00 0.00 2.71
1978 2925 9.953565 AAAACTAATGCTACCTCTGTAACAATA 57.046 29.630 0.00 0.00 0.00 1.90
1979 2926 9.601217 AAACTAATGCTACCTCTGTAACAATAG 57.399 33.333 0.00 0.00 34.70 1.73
1980 2927 8.307582 ACTAATGCTACCTCTGTAACAATAGT 57.692 34.615 0.00 0.00 36.01 2.12
1981 2928 8.198109 ACTAATGCTACCTCTGTAACAATAGTG 58.802 37.037 4.09 0.00 37.91 2.74
1982 2929 5.995565 TGCTACCTCTGTAACAATAGTGT 57.004 39.130 0.00 0.00 40.75 3.55
1983 2930 5.962433 TGCTACCTCTGTAACAATAGTGTC 58.038 41.667 0.00 0.00 36.80 3.67
1984 2931 5.479027 TGCTACCTCTGTAACAATAGTGTCA 59.521 40.000 0.00 0.00 36.80 3.58
1985 2932 6.014925 TGCTACCTCTGTAACAATAGTGTCAA 60.015 38.462 0.00 0.00 36.80 3.18
1986 2933 7.042335 GCTACCTCTGTAACAATAGTGTCAAT 58.958 38.462 0.00 0.00 36.80 2.57
1987 2934 7.549488 GCTACCTCTGTAACAATAGTGTCAATT 59.451 37.037 0.00 0.00 36.80 2.32
1990 2937 9.787435 ACCTCTGTAACAATAGTGTCAATTAAA 57.213 29.630 0.00 0.00 36.80 1.52
1992 2939 9.741168 CTCTGTAACAATAGTGTCAATTAAACG 57.259 33.333 0.00 0.00 36.80 3.60
1993 2940 9.263538 TCTGTAACAATAGTGTCAATTAAACGT 57.736 29.630 0.00 0.00 36.80 3.99
1994 2941 9.525007 CTGTAACAATAGTGTCAATTAAACGTC 57.475 33.333 0.00 0.00 36.80 4.34
1995 2942 9.263538 TGTAACAATAGTGTCAATTAAACGTCT 57.736 29.630 0.00 0.00 36.80 4.18
2051 2998 4.374843 TGCTGATGTGTATTGCATTTCC 57.625 40.909 0.00 0.00 0.00 3.13
2057 3004 5.945191 TGATGTGTATTGCATTTCCAGAAGA 59.055 36.000 0.00 0.00 0.00 2.87
2066 3013 5.713025 TGCATTTCCAGAAGAAGCATAAAC 58.287 37.500 0.00 0.00 32.41 2.01
2075 3022 6.147164 CCAGAAGAAGCATAAACAAACGAGTA 59.853 38.462 0.00 0.00 0.00 2.59
2076 3023 7.307751 CCAGAAGAAGCATAAACAAACGAGTAA 60.308 37.037 0.00 0.00 0.00 2.24
2083 3033 6.649141 AGCATAAACAAACGAGTAATCAGACA 59.351 34.615 0.00 0.00 0.00 3.41
2091 3041 7.169982 ACAAACGAGTAATCAGACAAGAAGAAG 59.830 37.037 0.00 0.00 0.00 2.85
2094 3044 5.061560 CGAGTAATCAGACAAGAAGAAGCAC 59.938 44.000 0.00 0.00 0.00 4.40
2104 3057 0.109597 GAAGAAGCACACCCATTGCG 60.110 55.000 0.00 0.00 45.15 4.85
2110 3063 0.243365 GCACACCCATTGCGAAATCA 59.757 50.000 0.00 0.00 0.00 2.57
2113 3066 2.746904 CACACCCATTGCGAAATCAGTA 59.253 45.455 0.00 0.00 0.00 2.74
2126 3079 5.858581 GCGAAATCAGTAACAAAATGAAGCT 59.141 36.000 0.00 0.00 0.00 3.74
2130 3083 9.415544 GAAATCAGTAACAAAATGAAGCTTGAT 57.584 29.630 2.10 0.00 0.00 2.57
2138 3091 7.472334 ACAAAATGAAGCTTGATTGACCTAT 57.528 32.000 12.08 0.00 0.00 2.57
2169 3152 2.384382 AGTTTCGCAGCAAACATTTCG 58.616 42.857 17.38 0.00 38.53 3.46
2215 3198 6.923508 ACTAAAATTAAACAGAAGCAAGGCAC 59.076 34.615 0.00 0.00 0.00 5.01
2279 3262 4.754667 GGACCCTTCCCACGACGC 62.755 72.222 0.00 0.00 35.57 5.19
2282 3265 2.742372 CCCTTCCCACGACGCTTG 60.742 66.667 0.00 0.00 0.00 4.01
2300 3283 0.606130 TGAGCATTTCCAGCTTCGCA 60.606 50.000 0.00 0.00 43.58 5.10
2324 3307 1.661341 GCCTGCACAGAGAATGGTAG 58.339 55.000 0.00 0.00 0.00 3.18
2325 3308 1.745141 GCCTGCACAGAGAATGGTAGG 60.745 57.143 0.00 0.00 36.06 3.18
2326 3309 1.134280 CCTGCACAGAGAATGGTAGGG 60.134 57.143 0.00 0.00 32.24 3.53
2327 3310 0.253044 TGCACAGAGAATGGTAGGGC 59.747 55.000 0.00 0.00 0.00 5.19
2328 3311 0.253044 GCACAGAGAATGGTAGGGCA 59.747 55.000 0.00 0.00 0.00 5.36
2329 3312 1.133976 GCACAGAGAATGGTAGGGCAT 60.134 52.381 0.00 0.00 0.00 4.40
2365 3349 3.626930 TGTCACAAAAACACCCTAAGCT 58.373 40.909 0.00 0.00 0.00 3.74
2385 3369 3.132111 GCTCCAAAACAACCTTCCTGAAA 59.868 43.478 0.00 0.00 0.00 2.69
2393 3377 7.423844 AAACAACCTTCCTGAAAGAAATTCT 57.576 32.000 0.00 0.00 38.92 2.40
2407 3391 8.073768 TGAAAGAAATTCTTAAGTTTACGGCTG 58.926 33.333 8.83 0.00 35.27 4.85
2512 3497 8.755696 AATTAATTGACGCATTTAACATGTGT 57.244 26.923 0.00 13.21 44.39 3.72
2580 3566 3.196039 CAGAACATGATTTTGCCCATGGA 59.804 43.478 15.22 0.00 43.16 3.41
2632 3618 5.716228 TCCAGTGAAATGGAAAACTATGCAT 59.284 36.000 3.79 3.79 46.45 3.96
2925 3911 5.476599 AGAAACACAATAGCACAATAGCCAA 59.523 36.000 0.00 0.00 34.23 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 2.897972 CGGAGGAAACGTAGGGGG 59.102 66.667 0.00 0.00 0.00 5.40
614 617 0.798776 CAAGTAGACTGCCAAAGCCG 59.201 55.000 0.00 0.00 38.69 5.52
627 630 2.868583 CCATCGCCATGAGAACAAGTAG 59.131 50.000 0.00 0.00 30.57 2.57
694 1542 3.242413 CGATTAATGCACGTCAAGGAAGG 60.242 47.826 0.00 0.00 0.00 3.46
695 1543 3.370978 ACGATTAATGCACGTCAAGGAAG 59.629 43.478 0.00 0.00 35.33 3.46
696 1544 3.124466 CACGATTAATGCACGTCAAGGAA 59.876 43.478 0.00 0.00 38.18 3.36
697 1545 2.670905 CACGATTAATGCACGTCAAGGA 59.329 45.455 0.00 0.00 38.18 3.36
763 1611 1.275666 TCCAGGTCACGATGATGGTT 58.724 50.000 0.00 0.00 30.53 3.67
796 1644 1.050204 AAGGTTGTACTGTACGGCCA 58.950 50.000 23.28 0.00 0.00 5.36
871 1720 2.767445 CGTGCGTAGTGGGGATCGA 61.767 63.158 0.00 0.00 0.00 3.59
876 1725 1.802715 CGTAACGTGCGTAGTGGGG 60.803 63.158 0.00 0.00 0.00 4.96
904 1753 2.022129 GGAATAGGATCGTGCGCCG 61.022 63.158 4.18 8.64 38.13 6.46
991 1848 1.592110 CGAGATTTGTAATGCGGCGTG 60.592 52.381 9.37 0.00 0.00 5.34
1055 1912 2.877582 CGTACGTACGTGCAGGGC 60.878 66.667 33.95 13.73 44.13 5.19
1064 1921 2.656328 GGCCGCCATCGTACGTAC 60.656 66.667 15.90 15.90 0.00 3.67
1065 1922 4.254672 CGGCCGCCATCGTACGTA 62.255 66.667 14.67 2.34 0.00 3.57
1105 1981 2.517166 GATGGCGCCTTCCCCTTC 60.517 66.667 29.70 9.03 0.00 3.46
1146 2023 0.528470 CCTCTTCCGCTTCTTCGTCT 59.472 55.000 0.00 0.00 0.00 4.18
1367 2249 3.371168 CAAAGAAAAGCGCTGCAAGTAA 58.629 40.909 12.58 0.00 35.30 2.24
1377 2259 2.916735 CTTGCAAGCAAAGAAAAGCG 57.083 45.000 14.65 0.00 35.33 4.68
1399 2281 8.103305 AGGCATGAAAAGAATCAAGAACTAGTA 58.897 33.333 0.00 0.00 32.06 1.82
1401 2283 7.388460 AGGCATGAAAAGAATCAAGAACTAG 57.612 36.000 0.00 0.00 32.06 2.57
1439 2321 5.419155 ACGCCATCACATATGCTAGTACTAT 59.581 40.000 2.33 0.00 0.00 2.12
1443 2325 3.826729 AGACGCCATCACATATGCTAGTA 59.173 43.478 1.58 0.00 0.00 1.82
1444 2326 2.630098 AGACGCCATCACATATGCTAGT 59.370 45.455 1.58 0.00 0.00 2.57
1445 2327 3.056962 AGAGACGCCATCACATATGCTAG 60.057 47.826 1.58 0.00 0.00 3.42
1475 2390 9.066892 AGTAGTAGTGAAATGCAATCTTTTCAA 57.933 29.630 13.33 0.00 43.44 2.69
1476 2391 8.621532 AGTAGTAGTGAAATGCAATCTTTTCA 57.378 30.769 8.73 8.73 41.27 2.69
1502 2417 5.571784 ATGCAACACATGAATGAAGTAGG 57.428 39.130 0.00 0.00 37.70 3.18
1504 2419 5.641636 ACGTATGCAACACATGAATGAAGTA 59.358 36.000 0.00 0.00 40.06 2.24
1505 2420 4.455533 ACGTATGCAACACATGAATGAAGT 59.544 37.500 0.00 0.00 40.06 3.01
1506 2421 4.973396 ACGTATGCAACACATGAATGAAG 58.027 39.130 0.00 0.00 40.06 3.02
1507 2422 4.453819 TGACGTATGCAACACATGAATGAA 59.546 37.500 0.00 0.00 40.06 2.57
1508 2423 3.999663 TGACGTATGCAACACATGAATGA 59.000 39.130 0.00 0.00 40.06 2.57
1509 2424 4.336932 CTGACGTATGCAACACATGAATG 58.663 43.478 0.00 0.00 40.06 2.67
1510 2425 3.181507 GCTGACGTATGCAACACATGAAT 60.182 43.478 0.00 0.00 40.06 2.57
1511 2426 2.159430 GCTGACGTATGCAACACATGAA 59.841 45.455 0.00 0.00 40.06 2.57
1512 2427 1.731709 GCTGACGTATGCAACACATGA 59.268 47.619 0.00 0.00 40.06 3.07
1513 2428 1.733912 AGCTGACGTATGCAACACATG 59.266 47.619 13.54 0.00 40.06 3.21
1522 2437 2.604914 CCAGTTAAGCAGCTGACGTATG 59.395 50.000 20.43 8.03 35.12 2.39
1557 2499 2.475339 TTGCATCAATTAGCCCCCAT 57.525 45.000 0.00 0.00 0.00 4.00
1606 2553 4.221924 GCTTACCACCCACCAAATTGTAAT 59.778 41.667 0.00 0.00 0.00 1.89
1637 2584 5.531122 AACCAAAGGAGGCTTAGTTTTTC 57.469 39.130 0.00 0.00 0.00 2.29
1651 2598 5.034852 ACAAAATTCCTCCAAACCAAAGG 57.965 39.130 0.00 0.00 0.00 3.11
1652 2599 6.041523 TCCTACAAAATTCCTCCAAACCAAAG 59.958 38.462 0.00 0.00 0.00 2.77
1653 2600 5.900123 TCCTACAAAATTCCTCCAAACCAAA 59.100 36.000 0.00 0.00 0.00 3.28
1654 2601 5.459505 TCCTACAAAATTCCTCCAAACCAA 58.540 37.500 0.00 0.00 0.00 3.67
1655 2602 5.068215 TCCTACAAAATTCCTCCAAACCA 57.932 39.130 0.00 0.00 0.00 3.67
1656 2603 6.605471 AATCCTACAAAATTCCTCCAAACC 57.395 37.500 0.00 0.00 0.00 3.27
1657 2604 8.147704 TGAAAATCCTACAAAATTCCTCCAAAC 58.852 33.333 0.00 0.00 0.00 2.93
1658 2605 8.256356 TGAAAATCCTACAAAATTCCTCCAAA 57.744 30.769 0.00 0.00 0.00 3.28
1659 2606 7.847711 TGAAAATCCTACAAAATTCCTCCAA 57.152 32.000 0.00 0.00 0.00 3.53
1660 2607 9.189156 CTATGAAAATCCTACAAAATTCCTCCA 57.811 33.333 0.00 0.00 0.00 3.86
1661 2608 8.633561 CCTATGAAAATCCTACAAAATTCCTCC 58.366 37.037 0.00 0.00 0.00 4.30
1662 2609 9.408648 TCCTATGAAAATCCTACAAAATTCCTC 57.591 33.333 0.00 0.00 0.00 3.71
1663 2610 9.942526 ATCCTATGAAAATCCTACAAAATTCCT 57.057 29.630 0.00 0.00 0.00 3.36
1703 2650 6.155136 CCAAAGAGCTCTGAAGGAATTTTTC 58.845 40.000 19.06 0.00 0.00 2.29
1704 2651 5.600069 ACCAAAGAGCTCTGAAGGAATTTTT 59.400 36.000 27.00 9.59 0.00 1.94
1705 2652 5.143369 ACCAAAGAGCTCTGAAGGAATTTT 58.857 37.500 27.00 10.23 0.00 1.82
1706 2653 4.734266 ACCAAAGAGCTCTGAAGGAATTT 58.266 39.130 27.00 10.86 0.00 1.82
1707 2654 4.379302 ACCAAAGAGCTCTGAAGGAATT 57.621 40.909 27.00 11.51 0.00 2.17
1708 2655 4.379302 AACCAAAGAGCTCTGAAGGAAT 57.621 40.909 27.00 16.39 0.00 3.01
1709 2656 3.864789 AACCAAAGAGCTCTGAAGGAA 57.135 42.857 27.00 0.00 0.00 3.36
1710 2657 3.117888 ACAAACCAAAGAGCTCTGAAGGA 60.118 43.478 27.00 0.00 0.00 3.36
1711 2658 3.217626 ACAAACCAAAGAGCTCTGAAGG 58.782 45.455 19.06 20.58 0.00 3.46
1712 2659 4.453819 CCTACAAACCAAAGAGCTCTGAAG 59.546 45.833 19.06 11.19 0.00 3.02
1713 2660 4.102524 TCCTACAAACCAAAGAGCTCTGAA 59.897 41.667 19.06 0.00 0.00 3.02
1714 2661 3.646162 TCCTACAAACCAAAGAGCTCTGA 59.354 43.478 19.06 2.19 0.00 3.27
1715 2662 4.008074 TCCTACAAACCAAAGAGCTCTG 57.992 45.455 19.06 7.57 0.00 3.35
1716 2663 4.706842 TTCCTACAAACCAAAGAGCTCT 57.293 40.909 11.45 11.45 0.00 4.09
1717 2664 5.003804 TCATTCCTACAAACCAAAGAGCTC 58.996 41.667 5.27 5.27 0.00 4.09
1718 2665 4.985538 TCATTCCTACAAACCAAAGAGCT 58.014 39.130 0.00 0.00 0.00 4.09
1719 2666 5.705609 TTCATTCCTACAAACCAAAGAGC 57.294 39.130 0.00 0.00 0.00 4.09
1720 2667 7.177392 AGGATTTCATTCCTACAAACCAAAGAG 59.823 37.037 0.00 0.00 44.50 2.85
1721 2668 7.010160 AGGATTTCATTCCTACAAACCAAAGA 58.990 34.615 0.00 0.00 44.50 2.52
1722 2669 7.232118 AGGATTTCATTCCTACAAACCAAAG 57.768 36.000 0.00 0.00 44.50 2.77
1759 2706 7.056635 TGAAATGTGGAGGATAGGAAGAATTC 58.943 38.462 0.00 0.00 46.67 2.17
1760 2707 6.973642 TGAAATGTGGAGGATAGGAAGAATT 58.026 36.000 0.00 0.00 0.00 2.17
1761 2708 6.581388 TGAAATGTGGAGGATAGGAAGAAT 57.419 37.500 0.00 0.00 0.00 2.40
1762 2709 6.581388 ATGAAATGTGGAGGATAGGAAGAA 57.419 37.500 0.00 0.00 0.00 2.52
1763 2710 6.270927 CCTATGAAATGTGGAGGATAGGAAGA 59.729 42.308 0.00 0.00 36.16 2.87
1764 2711 6.270927 TCCTATGAAATGTGGAGGATAGGAAG 59.729 42.308 0.00 0.00 38.86 3.46
1765 2712 6.150332 TCCTATGAAATGTGGAGGATAGGAA 58.850 40.000 0.00 0.00 38.86 3.36
1766 2713 5.726560 TCCTATGAAATGTGGAGGATAGGA 58.273 41.667 0.00 0.00 39.29 2.94
1767 2714 6.439636 TTCCTATGAAATGTGGAGGATAGG 57.560 41.667 0.00 0.00 36.22 2.57
1768 2715 7.775093 TGTTTTCCTATGAAATGTGGAGGATAG 59.225 37.037 0.00 0.00 40.08 2.08
1769 2716 7.638444 TGTTTTCCTATGAAATGTGGAGGATA 58.362 34.615 0.00 0.00 40.08 2.59
1770 2717 6.493166 TGTTTTCCTATGAAATGTGGAGGAT 58.507 36.000 0.00 0.00 40.08 3.24
1771 2718 5.886609 TGTTTTCCTATGAAATGTGGAGGA 58.113 37.500 0.00 0.00 40.08 3.71
1772 2719 6.588719 TTGTTTTCCTATGAAATGTGGAGG 57.411 37.500 0.00 0.00 40.08 4.30
1773 2720 7.432869 TGTTTGTTTTCCTATGAAATGTGGAG 58.567 34.615 0.00 0.00 40.08 3.86
1774 2721 7.353414 TGTTTGTTTTCCTATGAAATGTGGA 57.647 32.000 0.00 0.00 40.08 4.02
1775 2722 8.606040 AATGTTTGTTTTCCTATGAAATGTGG 57.394 30.769 0.00 0.00 40.08 4.17
1777 2724 9.423061 GCTAATGTTTGTTTTCCTATGAAATGT 57.577 29.630 0.00 0.00 40.08 2.71
1778 2725 8.872845 GGCTAATGTTTGTTTTCCTATGAAATG 58.127 33.333 0.00 0.00 40.08 2.32
1779 2726 8.815912 AGGCTAATGTTTGTTTTCCTATGAAAT 58.184 29.630 0.00 0.00 40.08 2.17
1780 2727 8.189119 AGGCTAATGTTTGTTTTCCTATGAAA 57.811 30.769 0.00 0.00 38.69 2.69
1781 2728 7.775053 AGGCTAATGTTTGTTTTCCTATGAA 57.225 32.000 0.00 0.00 0.00 2.57
1782 2729 8.325787 TCTAGGCTAATGTTTGTTTTCCTATGA 58.674 33.333 0.00 0.00 0.00 2.15
1783 2730 8.398665 GTCTAGGCTAATGTTTGTTTTCCTATG 58.601 37.037 0.00 0.00 0.00 2.23
1784 2731 8.329502 AGTCTAGGCTAATGTTTGTTTTCCTAT 58.670 33.333 0.00 0.00 0.00 2.57
1785 2732 7.686434 AGTCTAGGCTAATGTTTGTTTTCCTA 58.314 34.615 0.00 0.00 0.00 2.94
1786 2733 6.543735 AGTCTAGGCTAATGTTTGTTTTCCT 58.456 36.000 0.00 0.00 0.00 3.36
1787 2734 6.430000 TGAGTCTAGGCTAATGTTTGTTTTCC 59.570 38.462 0.00 0.00 0.00 3.13
1788 2735 7.435068 TGAGTCTAGGCTAATGTTTGTTTTC 57.565 36.000 0.00 0.00 0.00 2.29
1789 2736 7.817418 TTGAGTCTAGGCTAATGTTTGTTTT 57.183 32.000 0.00 0.00 0.00 2.43
1790 2737 7.094205 CCATTGAGTCTAGGCTAATGTTTGTTT 60.094 37.037 17.62 0.00 0.00 2.83
1791 2738 6.375455 CCATTGAGTCTAGGCTAATGTTTGTT 59.625 38.462 17.62 0.00 0.00 2.83
1792 2739 5.882557 CCATTGAGTCTAGGCTAATGTTTGT 59.117 40.000 17.62 0.00 0.00 2.83
1793 2740 6.115446 TCCATTGAGTCTAGGCTAATGTTTG 58.885 40.000 17.62 8.79 0.00 2.93
1794 2741 6.313519 TCCATTGAGTCTAGGCTAATGTTT 57.686 37.500 17.62 0.00 0.00 2.83
1795 2742 5.957771 TCCATTGAGTCTAGGCTAATGTT 57.042 39.130 17.62 0.00 0.00 2.71
1796 2743 5.957771 TTCCATTGAGTCTAGGCTAATGT 57.042 39.130 17.62 0.00 0.00 2.71
1797 2744 7.630242 TTTTTCCATTGAGTCTAGGCTAATG 57.370 36.000 0.00 8.01 0.00 1.90
1818 2765 7.310609 CCCTTTGATTCACACCATAGGATTTTT 60.311 37.037 0.00 0.00 34.69 1.94
1819 2766 6.155049 CCCTTTGATTCACACCATAGGATTTT 59.845 38.462 0.00 0.00 34.69 1.82
1820 2767 5.658190 CCCTTTGATTCACACCATAGGATTT 59.342 40.000 0.00 0.00 34.69 2.17
1821 2768 5.203528 CCCTTTGATTCACACCATAGGATT 58.796 41.667 0.00 0.00 34.69 3.01
1822 2769 4.796606 CCCTTTGATTCACACCATAGGAT 58.203 43.478 0.00 0.00 34.69 3.24
1823 2770 3.624707 GCCCTTTGATTCACACCATAGGA 60.625 47.826 0.00 0.00 34.69 2.94
1824 2771 2.689983 GCCCTTTGATTCACACCATAGG 59.310 50.000 0.00 0.00 33.22 2.57
1825 2772 3.355378 TGCCCTTTGATTCACACCATAG 58.645 45.455 0.00 0.00 0.00 2.23
1826 2773 3.448093 TGCCCTTTGATTCACACCATA 57.552 42.857 0.00 0.00 0.00 2.74
1827 2774 2.307496 TGCCCTTTGATTCACACCAT 57.693 45.000 0.00 0.00 0.00 3.55
1828 2775 2.170166 GATGCCCTTTGATTCACACCA 58.830 47.619 0.00 0.00 0.00 4.17
1829 2776 2.424956 GAGATGCCCTTTGATTCACACC 59.575 50.000 0.00 0.00 0.00 4.16
1830 2777 3.350833 AGAGATGCCCTTTGATTCACAC 58.649 45.455 0.00 0.00 0.00 3.82
1831 2778 3.726557 AGAGATGCCCTTTGATTCACA 57.273 42.857 0.00 0.00 0.00 3.58
1832 2779 5.397142 AAAAGAGATGCCCTTTGATTCAC 57.603 39.130 0.00 0.00 34.42 3.18
1833 2780 5.776716 AGAAAAAGAGATGCCCTTTGATTCA 59.223 36.000 0.00 0.00 34.42 2.57
1834 2781 6.278172 AGAAAAAGAGATGCCCTTTGATTC 57.722 37.500 0.00 0.00 34.42 2.52
1835 2782 7.968014 ATAGAAAAAGAGATGCCCTTTGATT 57.032 32.000 0.00 0.00 34.42 2.57
1836 2783 7.069208 GGAATAGAAAAAGAGATGCCCTTTGAT 59.931 37.037 0.00 0.00 34.42 2.57
1837 2784 6.378280 GGAATAGAAAAAGAGATGCCCTTTGA 59.622 38.462 0.00 0.00 34.42 2.69
1838 2785 6.379417 AGGAATAGAAAAAGAGATGCCCTTTG 59.621 38.462 0.00 0.00 34.42 2.77
1839 2786 6.497640 AGGAATAGAAAAAGAGATGCCCTTT 58.502 36.000 0.00 0.00 35.55 3.11
1840 2787 6.084749 AGGAATAGAAAAAGAGATGCCCTT 57.915 37.500 0.00 0.00 0.00 3.95
1841 2788 5.723860 AGGAATAGAAAAAGAGATGCCCT 57.276 39.130 0.00 0.00 0.00 5.19
1842 2789 8.470657 AAATAGGAATAGAAAAAGAGATGCCC 57.529 34.615 0.00 0.00 0.00 5.36
1864 2811 8.929260 TGACATGCATCTCAAATCCTATAAAT 57.071 30.769 1.73 0.00 0.00 1.40
1865 2812 8.929260 ATGACATGCATCTCAAATCCTATAAA 57.071 30.769 8.81 0.00 28.85 1.40
1880 2827 6.430308 GTCATAGGAAATGAGATGACATGCAT 59.570 38.462 8.58 0.00 44.91 3.96
1881 2828 5.761726 GTCATAGGAAATGAGATGACATGCA 59.238 40.000 8.58 0.00 44.91 3.96
1882 2829 5.996513 AGTCATAGGAAATGAGATGACATGC 59.003 40.000 14.37 0.00 46.94 4.06
1883 2830 8.447924 AAAGTCATAGGAAATGAGATGACATG 57.552 34.615 14.37 0.00 46.94 3.21
1884 2831 7.718753 GGAAAGTCATAGGAAATGAGATGACAT 59.281 37.037 14.37 1.96 46.94 3.06
1885 2832 7.050377 GGAAAGTCATAGGAAATGAGATGACA 58.950 38.462 14.37 0.00 46.94 3.58
1886 2833 7.278875 AGGAAAGTCATAGGAAATGAGATGAC 58.721 38.462 5.86 5.86 45.57 3.06
1887 2834 7.443302 AGGAAAGTCATAGGAAATGAGATGA 57.557 36.000 0.00 0.00 0.00 2.92
1888 2835 9.790344 AATAGGAAAGTCATAGGAAATGAGATG 57.210 33.333 0.00 0.00 0.00 2.90
1890 2837 8.432805 GGAATAGGAAAGTCATAGGAAATGAGA 58.567 37.037 0.00 0.00 0.00 3.27
1891 2838 8.435982 AGGAATAGGAAAGTCATAGGAAATGAG 58.564 37.037 0.00 0.00 0.00 2.90
1892 2839 8.337118 AGGAATAGGAAAGTCATAGGAAATGA 57.663 34.615 0.00 0.00 0.00 2.57
1895 2842 9.447279 TCATAGGAATAGGAAAGTCATAGGAAA 57.553 33.333 0.00 0.00 0.00 3.13
1896 2843 9.621239 ATCATAGGAATAGGAAAGTCATAGGAA 57.379 33.333 0.00 0.00 0.00 3.36
1897 2844 9.621239 AATCATAGGAATAGGAAAGTCATAGGA 57.379 33.333 0.00 0.00 0.00 2.94
1901 2848 9.579932 GGAAAATCATAGGAATAGGAAAGTCAT 57.420 33.333 0.00 0.00 0.00 3.06
1902 2849 8.556589 TGGAAAATCATAGGAATAGGAAAGTCA 58.443 33.333 0.00 0.00 0.00 3.41
1903 2850 8.980481 TGGAAAATCATAGGAATAGGAAAGTC 57.020 34.615 0.00 0.00 0.00 3.01
1904 2851 9.942526 ATTGGAAAATCATAGGAATAGGAAAGT 57.057 29.630 0.00 0.00 0.00 2.66
1906 2853 9.367160 GGATTGGAAAATCATAGGAATAGGAAA 57.633 33.333 1.28 0.00 0.00 3.13
1907 2854 8.736675 AGGATTGGAAAATCATAGGAATAGGAA 58.263 33.333 1.28 0.00 0.00 3.36
1908 2855 8.293027 AGGATTGGAAAATCATAGGAATAGGA 57.707 34.615 1.28 0.00 0.00 2.94
1913 2860 9.354673 GTTCATAGGATTGGAAAATCATAGGAA 57.645 33.333 13.10 13.10 41.07 3.36
1914 2861 7.944554 GGTTCATAGGATTGGAAAATCATAGGA 59.055 37.037 4.08 4.08 35.40 2.94
1915 2862 7.725397 TGGTTCATAGGATTGGAAAATCATAGG 59.275 37.037 1.28 0.58 30.31 2.57
1916 2863 8.696043 TGGTTCATAGGATTGGAAAATCATAG 57.304 34.615 1.28 0.00 30.31 2.23
1917 2864 9.486123 TTTGGTTCATAGGATTGGAAAATCATA 57.514 29.630 1.28 0.00 31.19 2.15
1918 2865 7.976414 TTGGTTCATAGGATTGGAAAATCAT 57.024 32.000 1.28 0.00 0.00 2.45
1919 2866 7.093377 CCTTTGGTTCATAGGATTGGAAAATCA 60.093 37.037 0.00 0.00 35.14 2.57
1920 2867 7.124147 TCCTTTGGTTCATAGGATTGGAAAATC 59.876 37.037 3.54 0.00 36.84 2.17
1921 2868 6.959366 TCCTTTGGTTCATAGGATTGGAAAAT 59.041 34.615 3.54 0.00 36.84 1.82
1922 2869 6.318913 TCCTTTGGTTCATAGGATTGGAAAA 58.681 36.000 3.54 0.00 36.84 2.29
1923 2870 5.898120 TCCTTTGGTTCATAGGATTGGAAA 58.102 37.500 3.54 0.00 36.84 3.13
1924 2871 5.509498 CTCCTTTGGTTCATAGGATTGGAA 58.491 41.667 7.38 0.00 39.94 3.53
1925 2872 4.079787 CCTCCTTTGGTTCATAGGATTGGA 60.080 45.833 7.38 0.00 39.94 3.53
1926 2873 4.210331 CCTCCTTTGGTTCATAGGATTGG 58.790 47.826 7.38 3.85 39.94 3.16
1927 2874 3.633986 GCCTCCTTTGGTTCATAGGATTG 59.366 47.826 7.38 4.49 39.94 2.67
1928 2875 3.373110 GGCCTCCTTTGGTTCATAGGATT 60.373 47.826 0.00 0.00 39.94 3.01
1929 2876 2.175715 GGCCTCCTTTGGTTCATAGGAT 59.824 50.000 0.00 0.00 39.94 3.24
1930 2877 1.564348 GGCCTCCTTTGGTTCATAGGA 59.436 52.381 0.00 6.86 38.81 2.94
1931 2878 1.566231 AGGCCTCCTTTGGTTCATAGG 59.434 52.381 0.00 0.00 34.61 2.57
1932 2879 4.503714 TTAGGCCTCCTTTGGTTCATAG 57.496 45.455 9.68 0.00 34.61 2.23
1933 2880 4.938575 TTTAGGCCTCCTTTGGTTCATA 57.061 40.909 9.68 0.00 34.61 2.15
1934 2881 3.825908 TTTAGGCCTCCTTTGGTTCAT 57.174 42.857 9.68 0.00 34.61 2.57
1935 2882 3.117284 AGTTTTAGGCCTCCTTTGGTTCA 60.117 43.478 9.68 0.00 34.61 3.18
1936 2883 3.497332 AGTTTTAGGCCTCCTTTGGTTC 58.503 45.455 9.68 0.00 34.61 3.62
1937 2884 3.612795 AGTTTTAGGCCTCCTTTGGTT 57.387 42.857 9.68 0.00 34.61 3.67
1938 2885 4.734843 TTAGTTTTAGGCCTCCTTTGGT 57.265 40.909 9.68 0.00 34.61 3.67
1939 2886 4.142160 GCATTAGTTTTAGGCCTCCTTTGG 60.142 45.833 9.68 0.00 34.61 3.28
1940 2887 4.706962 AGCATTAGTTTTAGGCCTCCTTTG 59.293 41.667 9.68 4.50 34.61 2.77
1941 2888 4.935578 AGCATTAGTTTTAGGCCTCCTTT 58.064 39.130 9.68 0.00 34.61 3.11
1942 2889 4.592997 AGCATTAGTTTTAGGCCTCCTT 57.407 40.909 9.68 0.00 34.61 3.36
1943 2890 4.141459 GGTAGCATTAGTTTTAGGCCTCCT 60.141 45.833 9.68 3.71 37.71 3.69
1944 2891 4.135306 GGTAGCATTAGTTTTAGGCCTCC 58.865 47.826 9.68 0.00 0.00 4.30
1945 2892 5.037383 AGGTAGCATTAGTTTTAGGCCTC 57.963 43.478 9.68 0.00 0.00 4.70
1946 2893 4.722279 AGAGGTAGCATTAGTTTTAGGCCT 59.278 41.667 11.78 11.78 0.00 5.19
1947 2894 4.816925 CAGAGGTAGCATTAGTTTTAGGCC 59.183 45.833 0.00 0.00 0.00 5.19
1948 2895 5.429130 ACAGAGGTAGCATTAGTTTTAGGC 58.571 41.667 0.00 0.00 0.00 3.93
1949 2896 8.038944 TGTTACAGAGGTAGCATTAGTTTTAGG 58.961 37.037 0.00 0.00 36.03 2.69
1950 2897 8.997621 TGTTACAGAGGTAGCATTAGTTTTAG 57.002 34.615 0.00 0.00 36.03 1.85
1951 2898 9.953565 ATTGTTACAGAGGTAGCATTAGTTTTA 57.046 29.630 0.00 0.00 39.90 1.52
1952 2899 8.863872 ATTGTTACAGAGGTAGCATTAGTTTT 57.136 30.769 0.00 0.00 39.90 2.43
1953 2900 9.601217 CTATTGTTACAGAGGTAGCATTAGTTT 57.399 33.333 0.00 0.00 39.90 2.66
1954 2901 8.759782 ACTATTGTTACAGAGGTAGCATTAGTT 58.240 33.333 14.73 5.79 45.34 2.24
1955 2902 8.198109 CACTATTGTTACAGAGGTAGCATTAGT 58.802 37.037 14.73 14.73 46.73 2.24
1956 2903 8.198109 ACACTATTGTTACAGAGGTAGCATTAG 58.802 37.037 13.90 13.90 43.17 1.73
1957 2904 8.074613 ACACTATTGTTACAGAGGTAGCATTA 57.925 34.615 0.00 0.00 39.90 1.90
1958 2905 6.947464 ACACTATTGTTACAGAGGTAGCATT 58.053 36.000 0.00 0.00 39.90 3.56
1959 2906 6.154534 TGACACTATTGTTACAGAGGTAGCAT 59.845 38.462 0.00 0.00 39.90 3.79
1960 2907 5.479027 TGACACTATTGTTACAGAGGTAGCA 59.521 40.000 0.00 0.00 38.70 3.49
1961 2908 5.962433 TGACACTATTGTTACAGAGGTAGC 58.038 41.667 2.28 0.00 35.47 3.58
1964 2911 9.787435 TTTAATTGACACTATTGTTACAGAGGT 57.213 29.630 0.00 0.00 35.47 3.85
1966 2913 9.741168 CGTTTAATTGACACTATTGTTACAGAG 57.259 33.333 0.00 0.00 35.47 3.35
1967 2914 9.263538 ACGTTTAATTGACACTATTGTTACAGA 57.736 29.630 0.00 0.00 35.47 3.41
1968 2915 9.525007 GACGTTTAATTGACACTATTGTTACAG 57.475 33.333 0.00 0.00 35.47 2.74
1969 2916 9.263538 AGACGTTTAATTGACACTATTGTTACA 57.736 29.630 0.00 0.00 35.47 2.41
1986 2933 9.358406 TCCCTCAGTATCATATAAGACGTTTAA 57.642 33.333 0.00 0.00 0.00 1.52
1987 2934 8.929260 TCCCTCAGTATCATATAAGACGTTTA 57.071 34.615 0.00 0.00 0.00 2.01
1988 2935 7.506261 ACTCCCTCAGTATCATATAAGACGTTT 59.494 37.037 0.00 0.00 31.37 3.60
1989 2936 7.005296 ACTCCCTCAGTATCATATAAGACGTT 58.995 38.462 0.00 0.00 31.37 3.99
1990 2937 6.544650 ACTCCCTCAGTATCATATAAGACGT 58.455 40.000 0.00 0.00 31.37 4.34
1991 2938 8.563123 TTACTCCCTCAGTATCATATAAGACG 57.437 38.462 0.00 0.00 37.44 4.18
2000 2947 9.310449 GGTAATCTTATTACTCCCTCAGTATCA 57.690 37.037 9.09 0.00 37.44 2.15
2001 2948 9.310449 TGGTAATCTTATTACTCCCTCAGTATC 57.690 37.037 9.09 0.00 37.44 2.24
2002 2949 9.670442 TTGGTAATCTTATTACTCCCTCAGTAT 57.330 33.333 9.09 0.00 37.44 2.12
2003 2950 9.496710 TTTGGTAATCTTATTACTCCCTCAGTA 57.503 33.333 9.09 0.00 36.43 2.74
2004 2951 7.989947 TTGGTAATCTTATTACTCCCTCAGT 57.010 36.000 9.09 0.00 39.41 3.41
2005 2952 9.277783 CATTTGGTAATCTTATTACTCCCTCAG 57.722 37.037 9.09 0.00 0.00 3.35
2006 2953 7.719633 GCATTTGGTAATCTTATTACTCCCTCA 59.280 37.037 9.09 0.00 0.00 3.86
2007 2954 7.939588 AGCATTTGGTAATCTTATTACTCCCTC 59.060 37.037 9.09 0.00 0.00 4.30
2008 2955 7.721399 CAGCATTTGGTAATCTTATTACTCCCT 59.279 37.037 9.09 0.00 0.00 4.20
2009 2956 7.719633 TCAGCATTTGGTAATCTTATTACTCCC 59.280 37.037 9.09 0.00 0.00 4.30
2010 2957 8.677148 TCAGCATTTGGTAATCTTATTACTCC 57.323 34.615 9.09 0.00 0.00 3.85
2023 2970 4.704057 TGCAATACACATCAGCATTTGGTA 59.296 37.500 0.00 0.00 0.00 3.25
2051 2998 5.990408 ACTCGTTTGTTTATGCTTCTTCTG 58.010 37.500 0.00 0.00 0.00 3.02
2057 3004 7.172532 TGTCTGATTACTCGTTTGTTTATGCTT 59.827 33.333 0.00 0.00 0.00 3.91
2066 3013 7.408132 TTCTTCTTGTCTGATTACTCGTTTG 57.592 36.000 0.00 0.00 0.00 2.93
2075 3022 3.817647 GGTGTGCTTCTTCTTGTCTGATT 59.182 43.478 0.00 0.00 0.00 2.57
2076 3023 3.406764 GGTGTGCTTCTTCTTGTCTGAT 58.593 45.455 0.00 0.00 0.00 2.90
2083 3033 1.615392 GCAATGGGTGTGCTTCTTCTT 59.385 47.619 0.00 0.00 39.00 2.52
2091 3041 0.243365 TGATTTCGCAATGGGTGTGC 59.757 50.000 0.00 0.00 37.67 4.57
2094 3044 3.190327 TGTTACTGATTTCGCAATGGGTG 59.810 43.478 0.00 0.00 0.00 4.61
2104 3057 8.801715 TCAAGCTTCATTTTGTTACTGATTTC 57.198 30.769 0.00 0.00 0.00 2.17
2110 3063 7.014615 AGGTCAATCAAGCTTCATTTTGTTACT 59.985 33.333 0.00 0.00 0.00 2.24
2113 3066 6.165700 AGGTCAATCAAGCTTCATTTTGTT 57.834 33.333 0.00 0.00 0.00 2.83
2126 3079 6.901300 ACTACCCTCTGTAATAGGTCAATCAA 59.099 38.462 0.00 0.00 33.70 2.57
2130 3083 6.127535 CGAAACTACCCTCTGTAATAGGTCAA 60.128 42.308 0.00 0.00 33.70 3.18
2138 3091 2.353406 GCTGCGAAACTACCCTCTGTAA 60.353 50.000 0.00 0.00 0.00 2.41
2215 3198 5.729883 CGTGCGATCAAGAGAAACAAATAAG 59.270 40.000 0.00 0.00 0.00 1.73
2279 3262 2.539346 CGAAGCTGGAAATGCTCAAG 57.461 50.000 0.00 0.00 40.22 3.02
2300 3283 0.322975 ATTCTCTGTGCAGGCGTCTT 59.677 50.000 0.00 0.00 0.00 3.01
2324 3307 3.954258 ACAAGCCTATCTTAACAATGCCC 59.046 43.478 0.00 0.00 32.74 5.36
2325 3308 4.640201 TGACAAGCCTATCTTAACAATGCC 59.360 41.667 0.00 0.00 32.74 4.40
2326 3309 5.123820 TGTGACAAGCCTATCTTAACAATGC 59.876 40.000 0.00 0.00 32.74 3.56
2327 3310 6.741992 TGTGACAAGCCTATCTTAACAATG 57.258 37.500 0.00 0.00 32.74 2.82
2328 3311 7.759489 TTTGTGACAAGCCTATCTTAACAAT 57.241 32.000 0.00 0.00 34.55 2.71
2329 3312 7.575414 TTTTGTGACAAGCCTATCTTAACAA 57.425 32.000 0.00 0.00 33.60 2.83
2365 3349 4.605183 TCTTTCAGGAAGGTTGTTTTGGA 58.395 39.130 0.00 0.00 35.98 3.53
2385 3369 7.506328 AACAGCCGTAAACTTAAGAATTTCT 57.494 32.000 10.09 0.00 0.00 2.52
2393 3377 5.644206 TCATGCATAACAGCCGTAAACTTAA 59.356 36.000 0.00 0.00 0.00 1.85
2407 3391 5.975344 CCATCACTGAAATGTCATGCATAAC 59.025 40.000 0.00 0.00 36.67 1.89
2504 3489 4.260990 CCGTGTTGTAACATGACACATGTT 60.261 41.667 25.70 25.70 46.34 2.71
2508 3493 2.158943 TCCCGTGTTGTAACATGACACA 60.159 45.455 16.38 7.52 46.34 3.72
2509 3494 2.478894 CTCCCGTGTTGTAACATGACAC 59.521 50.000 16.38 5.80 46.34 3.67
2510 3495 2.761559 CTCCCGTGTTGTAACATGACA 58.238 47.619 16.38 0.00 46.34 3.58
2511 3496 1.463444 GCTCCCGTGTTGTAACATGAC 59.537 52.381 16.38 0.00 46.34 3.06
2512 3497 1.803334 GCTCCCGTGTTGTAACATGA 58.197 50.000 16.38 6.51 46.34 3.07
2513 3498 0.442310 CGCTCCCGTGTTGTAACATG 59.558 55.000 9.45 9.45 43.77 3.21
2580 3566 3.445096 GCATAACCAAGATGGAAGCAACT 59.555 43.478 2.85 0.00 40.96 3.16
2632 3618 3.236047 TGACCAGTTCCTTACTAGCACA 58.764 45.455 0.00 0.00 34.56 4.57
2765 3751 9.173021 TGAATTCATTGGTAATCGACTGTAATT 57.827 29.630 3.38 0.00 0.00 1.40
2840 3826 5.999600 TGTATGATATGTCAATCCTTGCCTG 59.000 40.000 0.00 0.00 38.01 4.85
2870 3856 7.596749 ACAAGTACTCGGAGTAATGATTTTG 57.403 36.000 26.38 19.16 31.62 2.44
2925 3911 8.445275 TGCTCGGATGTGTATGTAATATTTTT 57.555 30.769 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.