Multiple sequence alignment - TraesCS1A01G101900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G101900 chr1A 100.000 3975 0 0 1 3975 98018613 98022587 0.000000e+00 7341.0
1 TraesCS1A01G101900 chr1A 100.000 308 0 0 3133 3440 309691547 309691854 1.600000e-158 569.0
2 TraesCS1A01G101900 chr1A 99.344 305 2 0 3135 3439 282546531 282546227 1.610000e-153 553.0
3 TraesCS1A01G101900 chr1B 93.376 2340 100 18 773 3075 130359198 130361519 0.000000e+00 3411.0
4 TraesCS1A01G101900 chr1B 93.056 360 16 4 3621 3975 130361759 130362114 5.890000e-143 518.0
5 TraesCS1A01G101900 chr1D 93.532 2211 92 18 772 2948 79167260 79169453 0.000000e+00 3243.0
6 TraesCS1A01G101900 chr1D 85.045 555 39 23 3441 3970 79169623 79170158 3.520000e-145 525.0
7 TraesCS1A01G101900 chr6B 99.226 775 4 2 1 775 578691076 578690304 0.000000e+00 1397.0
8 TraesCS1A01G101900 chr6B 89.886 791 59 15 1 775 690305924 690305139 0.000000e+00 998.0
9 TraesCS1A01G101900 chr6B 85.227 176 26 0 1546 1721 95973054 95973229 8.770000e-42 182.0
10 TraesCS1A01G101900 chr6A 98.834 772 9 0 1 772 140572350 140573121 0.000000e+00 1376.0
11 TraesCS1A01G101900 chr3B 89.776 714 57 13 1 701 790642771 790643481 0.000000e+00 900.0
12 TraesCS1A01G101900 chr3B 87.432 183 23 0 1542 1724 706497390 706497208 1.120000e-50 211.0
13 TraesCS1A01G101900 chr2B 98.447 322 4 1 3129 3449 140790289 140789968 2.070000e-157 566.0
14 TraesCS1A01G101900 chr2B 88.636 176 20 0 1546 1721 772920821 772920646 8.650000e-52 215.0
15 TraesCS1A01G101900 chr2B 87.151 179 20 3 1546 1721 263835439 263835617 2.420000e-47 200.0
16 TraesCS1A01G101900 chr2A 99.048 315 3 0 3129 3443 32505252 32504938 2.070000e-157 566.0
17 TraesCS1A01G101900 chr2A 88.068 176 21 0 1546 1721 687898424 687898599 4.030000e-50 209.0
18 TraesCS1A01G101900 chr2A 87.079 178 21 2 1546 1722 485223389 485223565 2.420000e-47 200.0
19 TraesCS1A01G101900 chr7B 99.038 312 1 2 3134 3444 11939836 11940146 3.470000e-155 558.0
20 TraesCS1A01G101900 chr7B 98.403 313 4 1 3134 3445 462882905 462883217 2.090000e-152 549.0
21 TraesCS1A01G101900 chr7B 91.518 224 17 1 552 775 673660595 673660816 1.390000e-79 307.0
22 TraesCS1A01G101900 chr3A 98.722 313 3 1 3134 3445 51751885 51751573 4.490000e-154 555.0
23 TraesCS1A01G101900 chr3A 89.883 257 23 2 526 781 628866660 628866914 1.070000e-85 327.0
24 TraesCS1A01G101900 chrUn 99.029 309 2 1 3132 3440 301837868 301838175 1.610000e-153 553.0
25 TraesCS1A01G101900 chr4B 98.397 312 4 1 3134 3444 385922671 385922982 7.510000e-152 547.0
26 TraesCS1A01G101900 chr4A 83.260 454 53 11 1450 1899 206176742 206176308 2.880000e-106 396.0
27 TraesCS1A01G101900 chr4A 91.892 222 16 1 555 776 45345669 45345450 3.860000e-80 309.0
28 TraesCS1A01G101900 chr5B 91.743 218 16 1 558 775 555192804 555192589 6.460000e-78 302.0
29 TraesCS1A01G101900 chr5B 90.045 221 20 1 552 772 387760357 387760575 6.500000e-73 285.0
30 TraesCS1A01G101900 chr5B 90.909 55 5 0 432 486 441451560 441451506 1.530000e-09 75.0
31 TraesCS1A01G101900 chr7D 90.323 217 19 1 554 770 232325060 232325274 2.340000e-72 283.0
32 TraesCS1A01G101900 chr2D 87.654 81 10 0 1644 1724 93150981 93150901 1.180000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G101900 chr1A 98018613 98022587 3974 False 7341.0 7341 100.0000 1 3975 1 chr1A.!!$F1 3974
1 TraesCS1A01G101900 chr1B 130359198 130362114 2916 False 1964.5 3411 93.2160 773 3975 2 chr1B.!!$F1 3202
2 TraesCS1A01G101900 chr1D 79167260 79170158 2898 False 1884.0 3243 89.2885 772 3970 2 chr1D.!!$F1 3198
3 TraesCS1A01G101900 chr6B 578690304 578691076 772 True 1397.0 1397 99.2260 1 775 1 chr6B.!!$R1 774
4 TraesCS1A01G101900 chr6B 690305139 690305924 785 True 998.0 998 89.8860 1 775 1 chr6B.!!$R2 774
5 TraesCS1A01G101900 chr6A 140572350 140573121 771 False 1376.0 1376 98.8340 1 772 1 chr6A.!!$F1 771
6 TraesCS1A01G101900 chr3B 790642771 790643481 710 False 900.0 900 89.7760 1 701 1 chr3B.!!$F1 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
840 866 0.478507 CACCCTGAAAACTGGGAGGT 59.521 55.0 16.78 0.0 0.00 3.85 F
1568 1617 0.170561 CTTGCAGAGCCTGTCATTGC 59.829 55.0 4.45 0.0 33.43 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2758 2821 0.253044 GCACAGAGAATGGTAGGGCA 59.747 55.0 0.0 0.0 0.00 5.36 R
2982 3075 0.109597 GAAGAAGCACACCCATTGCG 60.110 55.0 0.0 0.0 45.15 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
739 758 6.107343 TGGTATCGAAACCAATTCAATACGA 58.893 36.000 0.00 0.00 46.55 3.43
782 801 2.363788 ACGCAGCGTAAGAGAAATGA 57.636 45.000 21.52 0.00 38.73 2.57
814 833 2.040464 TTTTTGGGGGCTTGGGCA 60.040 55.556 0.00 0.00 40.87 5.36
840 866 0.478507 CACCCTGAAAACTGGGAGGT 59.521 55.000 16.78 0.00 0.00 3.85
842 868 2.308866 CACCCTGAAAACTGGGAGGTAT 59.691 50.000 16.78 0.00 0.00 2.73
879 905 5.681543 GCTTCTTTCAACGGAAACACTAAAG 59.318 40.000 0.00 0.00 38.07 1.85
886 912 7.323049 TCAACGGAAACACTAAAGATTGAAA 57.677 32.000 0.00 0.00 0.00 2.69
938 964 0.551377 TAATCCTCCAGGCCCACCAA 60.551 55.000 0.00 0.00 39.06 3.67
1290 1317 1.398390 CTCGCGCCTCTTAGCATTTTT 59.602 47.619 0.00 0.00 0.00 1.94
1437 1464 4.293648 CCGTCACGTGGTGGCTCA 62.294 66.667 17.00 0.00 35.84 4.26
1568 1617 0.170561 CTTGCAGAGCCTGTCATTGC 59.829 55.000 4.45 0.00 33.43 3.56
1593 1642 5.466728 TCTTAGTGTGCTGTTGTGATTCTTC 59.533 40.000 0.00 0.00 0.00 2.87
1647 1697 6.406177 CGTTTGTAGTATAGAAAGGGCCACTA 60.406 42.308 6.18 6.95 34.26 2.74
1667 1717 2.787473 TCAGCAGTAGGGTTTGGATG 57.213 50.000 0.00 0.00 0.00 3.51
1668 1718 1.098050 CAGCAGTAGGGTTTGGATGC 58.902 55.000 0.00 0.00 0.00 3.91
1669 1719 0.995024 AGCAGTAGGGTTTGGATGCT 59.005 50.000 0.00 0.00 39.09 3.79
1678 1728 1.068055 GGTTTGGATGCTTGCTGTGAG 60.068 52.381 0.00 0.00 0.00 3.51
1726 1776 1.869767 GCTCTATGCCTCATTTGTCCG 59.130 52.381 0.00 0.00 35.15 4.79
1734 1784 3.450817 TGCCTCATTTGTCCGAATCTAGA 59.549 43.478 0.00 0.00 0.00 2.43
1747 1797 5.835819 TCCGAATCTAGAATGACTGGATCTT 59.164 40.000 0.00 0.00 44.16 2.40
1879 1937 5.652014 TGAATAGGTAGTGGCATCTTTTTGG 59.348 40.000 0.00 0.00 0.00 3.28
2161 2221 8.445275 TGCTCGGATGTGTATGTAATATTTTT 57.555 30.769 0.00 0.00 0.00 1.94
2216 2276 7.596749 ACAAGTACTCGGAGTAATGATTTTG 57.403 36.000 26.38 19.16 31.62 2.44
2246 2306 5.999600 TGTATGATATGTCAATCCTTGCCTG 59.000 40.000 0.00 0.00 38.01 4.85
2321 2381 9.173021 TGAATTCATTGGTAATCGACTGTAATT 57.827 29.630 3.38 0.00 0.00 1.40
2454 2514 3.236047 TGACCAGTTCCTTACTAGCACA 58.764 45.455 0.00 0.00 34.56 4.57
2506 2566 3.445096 GCATAACCAAGATGGAAGCAACT 59.555 43.478 2.85 0.00 40.96 3.16
2573 2634 0.442310 CGCTCCCGTGTTGTAACATG 59.558 55.000 9.45 9.45 43.77 3.21
2574 2635 1.803334 GCTCCCGTGTTGTAACATGA 58.197 50.000 16.38 6.51 46.34 3.07
2575 2636 1.463444 GCTCCCGTGTTGTAACATGAC 59.537 52.381 16.38 0.00 46.34 3.06
2576 2637 2.761559 CTCCCGTGTTGTAACATGACA 58.238 47.619 16.38 0.00 46.34 3.58
2577 2638 2.478894 CTCCCGTGTTGTAACATGACAC 59.521 50.000 16.38 5.80 46.34 3.67
2578 2639 2.158943 TCCCGTGTTGTAACATGACACA 60.159 45.455 16.38 7.52 46.34 3.72
2582 2643 4.260990 CCGTGTTGTAACATGACACATGTT 60.261 41.667 25.70 25.70 46.34 2.71
2679 2741 5.975344 CCATCACTGAAATGTCATGCATAAC 59.025 40.000 0.00 0.00 36.67 1.89
2693 2755 5.644206 TCATGCATAACAGCCGTAAACTTAA 59.356 36.000 0.00 0.00 0.00 1.85
2701 2763 7.506328 AACAGCCGTAAACTTAAGAATTTCT 57.494 32.000 10.09 0.00 0.00 2.52
2721 2783 4.605183 TCTTTCAGGAAGGTTGTTTTGGA 58.395 39.130 0.00 0.00 35.98 3.53
2757 2820 7.575414 TTTTGTGACAAGCCTATCTTAACAA 57.425 32.000 0.00 0.00 33.60 2.83
2758 2821 7.759489 TTTGTGACAAGCCTATCTTAACAAT 57.241 32.000 0.00 0.00 34.55 2.71
2759 2822 6.741992 TGTGACAAGCCTATCTTAACAATG 57.258 37.500 0.00 0.00 32.74 2.82
2760 2823 5.123820 TGTGACAAGCCTATCTTAACAATGC 59.876 40.000 0.00 0.00 32.74 3.56
2761 2824 4.640201 TGACAAGCCTATCTTAACAATGCC 59.360 41.667 0.00 0.00 32.74 4.40
2762 2825 3.954258 ACAAGCCTATCTTAACAATGCCC 59.046 43.478 0.00 0.00 32.74 5.36
2786 2849 0.322975 ATTCTCTGTGCAGGCGTCTT 59.677 50.000 0.00 0.00 0.00 3.01
2807 2870 2.539346 CGAAGCTGGAAATGCTCAAG 57.461 50.000 0.00 0.00 40.22 3.02
2871 2934 5.729883 CGTGCGATCAAGAGAAACAAATAAG 59.270 40.000 0.00 0.00 0.00 1.73
2948 3011 2.353406 GCTGCGAAACTACCCTCTGTAA 60.353 50.000 0.00 0.00 0.00 2.41
2956 3049 6.127535 CGAAACTACCCTCTGTAATAGGTCAA 60.128 42.308 0.00 0.00 33.70 3.18
2960 3053 6.901300 ACTACCCTCTGTAATAGGTCAATCAA 59.099 38.462 0.00 0.00 33.70 2.57
2973 3066 6.165700 AGGTCAATCAAGCTTCATTTTGTT 57.834 33.333 0.00 0.00 0.00 2.83
2976 3069 7.014615 AGGTCAATCAAGCTTCATTTTGTTACT 59.985 33.333 0.00 0.00 0.00 2.24
2982 3075 8.801715 TCAAGCTTCATTTTGTTACTGATTTC 57.198 30.769 0.00 0.00 0.00 2.17
2992 3088 3.190327 TGTTACTGATTTCGCAATGGGTG 59.810 43.478 0.00 0.00 0.00 4.61
2995 3091 0.243365 TGATTTCGCAATGGGTGTGC 59.757 50.000 0.00 0.00 37.67 4.57
3003 3099 1.615392 GCAATGGGTGTGCTTCTTCTT 59.385 47.619 0.00 0.00 39.00 2.52
3010 3109 3.406764 GGTGTGCTTCTTCTTGTCTGAT 58.593 45.455 0.00 0.00 0.00 2.90
3011 3110 3.817647 GGTGTGCTTCTTCTTGTCTGATT 59.182 43.478 0.00 0.00 0.00 2.57
3020 3119 7.408132 TTCTTCTTGTCTGATTACTCGTTTG 57.592 36.000 0.00 0.00 0.00 2.93
3029 3128 7.172532 TGTCTGATTACTCGTTTGTTTATGCTT 59.827 33.333 0.00 0.00 0.00 3.91
3035 3134 5.990408 ACTCGTTTGTTTATGCTTCTTCTG 58.010 37.500 0.00 0.00 0.00 3.02
3063 3162 4.704057 TGCAATACACATCAGCATTTGGTA 59.296 37.500 0.00 0.00 0.00 3.25
3076 3175 8.677148 TCAGCATTTGGTAATCTTATTACTCC 57.323 34.615 9.09 0.00 0.00 3.85
3077 3176 7.719633 TCAGCATTTGGTAATCTTATTACTCCC 59.280 37.037 9.09 0.00 0.00 4.30
3078 3177 7.721399 CAGCATTTGGTAATCTTATTACTCCCT 59.279 37.037 9.09 0.00 0.00 4.20
3079 3178 7.939588 AGCATTTGGTAATCTTATTACTCCCTC 59.060 37.037 9.09 0.00 0.00 4.30
3080 3179 7.719633 GCATTTGGTAATCTTATTACTCCCTCA 59.280 37.037 9.09 0.00 0.00 3.86
3081 3180 9.277783 CATTTGGTAATCTTATTACTCCCTCAG 57.722 37.037 9.09 0.00 0.00 3.35
3082 3181 7.989947 TTGGTAATCTTATTACTCCCTCAGT 57.010 36.000 9.09 0.00 39.41 3.41
3083 3182 9.496710 TTTGGTAATCTTATTACTCCCTCAGTA 57.503 33.333 9.09 0.00 36.43 2.74
3084 3183 9.670442 TTGGTAATCTTATTACTCCCTCAGTAT 57.330 33.333 9.09 0.00 37.44 2.12
3085 3184 9.310449 TGGTAATCTTATTACTCCCTCAGTATC 57.690 37.037 9.09 0.00 37.44 2.24
3086 3185 9.310449 GGTAATCTTATTACTCCCTCAGTATCA 57.690 37.037 9.09 0.00 37.44 2.15
3095 3194 8.563123 TTACTCCCTCAGTATCATATAAGACG 57.437 38.462 0.00 0.00 37.44 4.18
3096 3195 6.544650 ACTCCCTCAGTATCATATAAGACGT 58.455 40.000 0.00 0.00 31.37 4.34
3097 3196 7.005296 ACTCCCTCAGTATCATATAAGACGTT 58.995 38.462 0.00 0.00 31.37 3.99
3098 3197 7.506261 ACTCCCTCAGTATCATATAAGACGTTT 59.494 37.037 0.00 0.00 31.37 3.60
3099 3198 8.929260 TCCCTCAGTATCATATAAGACGTTTA 57.071 34.615 0.00 0.00 0.00 2.01
3100 3199 9.358406 TCCCTCAGTATCATATAAGACGTTTAA 57.642 33.333 0.00 0.00 0.00 1.52
3117 3216 9.263538 AGACGTTTAATTGACACTATTGTTACA 57.736 29.630 0.00 0.00 35.47 2.41
3118 3217 9.525007 GACGTTTAATTGACACTATTGTTACAG 57.475 33.333 0.00 0.00 35.47 2.74
3119 3218 9.263538 ACGTTTAATTGACACTATTGTTACAGA 57.736 29.630 0.00 0.00 35.47 3.41
3120 3219 9.741168 CGTTTAATTGACACTATTGTTACAGAG 57.259 33.333 0.00 0.00 35.47 3.35
3122 3221 9.787435 TTTAATTGACACTATTGTTACAGAGGT 57.213 29.630 0.00 0.00 35.47 3.85
3125 3224 5.962433 TGACACTATTGTTACAGAGGTAGC 58.038 41.667 2.28 0.00 35.47 3.58
3126 3225 5.479027 TGACACTATTGTTACAGAGGTAGCA 59.521 40.000 0.00 0.00 38.70 3.49
3127 3226 6.154534 TGACACTATTGTTACAGAGGTAGCAT 59.845 38.462 0.00 0.00 39.90 3.79
3128 3227 6.947464 ACACTATTGTTACAGAGGTAGCATT 58.053 36.000 0.00 0.00 39.90 3.56
3129 3228 8.074613 ACACTATTGTTACAGAGGTAGCATTA 57.925 34.615 0.00 0.00 39.90 1.90
3130 3229 8.198109 ACACTATTGTTACAGAGGTAGCATTAG 58.802 37.037 13.90 13.90 43.17 1.73
3131 3230 8.198109 CACTATTGTTACAGAGGTAGCATTAGT 58.802 37.037 14.73 14.73 46.73 2.24
3132 3231 8.759782 ACTATTGTTACAGAGGTAGCATTAGTT 58.240 33.333 14.73 5.79 45.34 2.24
3133 3232 9.601217 CTATTGTTACAGAGGTAGCATTAGTTT 57.399 33.333 0.00 0.00 39.90 2.66
3134 3233 8.863872 ATTGTTACAGAGGTAGCATTAGTTTT 57.136 30.769 0.00 0.00 39.90 2.43
3135 3234 9.953565 ATTGTTACAGAGGTAGCATTAGTTTTA 57.046 29.630 0.00 0.00 39.90 1.52
3136 3235 8.997621 TGTTACAGAGGTAGCATTAGTTTTAG 57.002 34.615 0.00 0.00 36.03 1.85
3137 3236 8.038944 TGTTACAGAGGTAGCATTAGTTTTAGG 58.961 37.037 0.00 0.00 36.03 2.69
3138 3237 5.429130 ACAGAGGTAGCATTAGTTTTAGGC 58.571 41.667 0.00 0.00 0.00 3.93
3139 3238 4.816925 CAGAGGTAGCATTAGTTTTAGGCC 59.183 45.833 0.00 0.00 0.00 5.19
3140 3239 4.722279 AGAGGTAGCATTAGTTTTAGGCCT 59.278 41.667 11.78 11.78 0.00 5.19
3141 3240 5.037383 AGGTAGCATTAGTTTTAGGCCTC 57.963 43.478 9.68 0.00 0.00 4.70
3142 3241 4.135306 GGTAGCATTAGTTTTAGGCCTCC 58.865 47.826 9.68 0.00 0.00 4.30
3143 3242 4.141459 GGTAGCATTAGTTTTAGGCCTCCT 60.141 45.833 9.68 3.71 37.71 3.69
3144 3243 4.592997 AGCATTAGTTTTAGGCCTCCTT 57.407 40.909 9.68 0.00 34.61 3.36
3145 3244 4.935578 AGCATTAGTTTTAGGCCTCCTTT 58.064 39.130 9.68 0.00 34.61 3.11
3146 3245 4.706962 AGCATTAGTTTTAGGCCTCCTTTG 59.293 41.667 9.68 4.50 34.61 2.77
3147 3246 4.142160 GCATTAGTTTTAGGCCTCCTTTGG 60.142 45.833 9.68 0.00 34.61 3.28
3148 3247 4.734843 TTAGTTTTAGGCCTCCTTTGGT 57.265 40.909 9.68 0.00 34.61 3.67
3149 3248 3.612795 AGTTTTAGGCCTCCTTTGGTT 57.387 42.857 9.68 0.00 34.61 3.67
3150 3249 3.497332 AGTTTTAGGCCTCCTTTGGTTC 58.503 45.455 9.68 0.00 34.61 3.62
3151 3250 3.117284 AGTTTTAGGCCTCCTTTGGTTCA 60.117 43.478 9.68 0.00 34.61 3.18
3152 3251 3.825908 TTTAGGCCTCCTTTGGTTCAT 57.174 42.857 9.68 0.00 34.61 2.57
3153 3252 4.938575 TTTAGGCCTCCTTTGGTTCATA 57.061 40.909 9.68 0.00 34.61 2.15
3154 3253 4.503714 TTAGGCCTCCTTTGGTTCATAG 57.496 45.455 9.68 0.00 34.61 2.23
3155 3254 1.566231 AGGCCTCCTTTGGTTCATAGG 59.434 52.381 0.00 0.00 34.61 2.57
3156 3255 1.564348 GGCCTCCTTTGGTTCATAGGA 59.436 52.381 0.00 6.86 38.81 2.94
3157 3256 2.175715 GGCCTCCTTTGGTTCATAGGAT 59.824 50.000 0.00 0.00 39.94 3.24
3158 3257 3.373110 GGCCTCCTTTGGTTCATAGGATT 60.373 47.826 0.00 0.00 39.94 3.01
3159 3258 3.633986 GCCTCCTTTGGTTCATAGGATTG 59.366 47.826 7.38 4.49 39.94 2.67
3160 3259 4.210331 CCTCCTTTGGTTCATAGGATTGG 58.790 47.826 7.38 3.85 39.94 3.16
3161 3260 4.079787 CCTCCTTTGGTTCATAGGATTGGA 60.080 45.833 7.38 0.00 39.94 3.53
3162 3261 5.509498 CTCCTTTGGTTCATAGGATTGGAA 58.491 41.667 7.38 0.00 39.94 3.53
3163 3262 5.898120 TCCTTTGGTTCATAGGATTGGAAA 58.102 37.500 3.54 0.00 36.84 3.13
3164 3263 6.318913 TCCTTTGGTTCATAGGATTGGAAAA 58.681 36.000 3.54 0.00 36.84 2.29
3165 3264 6.959366 TCCTTTGGTTCATAGGATTGGAAAAT 59.041 34.615 3.54 0.00 36.84 1.82
3166 3265 7.124147 TCCTTTGGTTCATAGGATTGGAAAATC 59.876 37.037 3.54 0.00 36.84 2.17
3167 3266 7.093377 CCTTTGGTTCATAGGATTGGAAAATCA 60.093 37.037 0.00 0.00 35.14 2.57
3168 3267 7.976414 TTGGTTCATAGGATTGGAAAATCAT 57.024 32.000 1.28 0.00 0.00 2.45
3169 3268 9.486123 TTTGGTTCATAGGATTGGAAAATCATA 57.514 29.630 1.28 0.00 31.19 2.15
3170 3269 8.696043 TGGTTCATAGGATTGGAAAATCATAG 57.304 34.615 1.28 0.00 30.31 2.23
3171 3270 7.725397 TGGTTCATAGGATTGGAAAATCATAGG 59.275 37.037 1.28 0.58 30.31 2.57
3172 3271 7.944554 GGTTCATAGGATTGGAAAATCATAGGA 59.055 37.037 4.08 4.08 35.40 2.94
3173 3272 9.354673 GTTCATAGGATTGGAAAATCATAGGAA 57.645 33.333 13.10 13.10 41.07 3.36
3178 3277 8.293027 AGGATTGGAAAATCATAGGAATAGGA 57.707 34.615 1.28 0.00 0.00 2.94
3179 3278 8.736675 AGGATTGGAAAATCATAGGAATAGGAA 58.263 33.333 1.28 0.00 0.00 3.36
3180 3279 9.367160 GGATTGGAAAATCATAGGAATAGGAAA 57.633 33.333 1.28 0.00 0.00 3.13
3182 3281 9.942526 ATTGGAAAATCATAGGAATAGGAAAGT 57.057 29.630 0.00 0.00 0.00 2.66
3183 3282 8.980481 TGGAAAATCATAGGAATAGGAAAGTC 57.020 34.615 0.00 0.00 0.00 3.01
3184 3283 8.556589 TGGAAAATCATAGGAATAGGAAAGTCA 58.443 33.333 0.00 0.00 0.00 3.41
3185 3284 9.579932 GGAAAATCATAGGAATAGGAAAGTCAT 57.420 33.333 0.00 0.00 0.00 3.06
3189 3288 9.621239 AATCATAGGAATAGGAAAGTCATAGGA 57.379 33.333 0.00 0.00 0.00 2.94
3190 3289 9.621239 ATCATAGGAATAGGAAAGTCATAGGAA 57.379 33.333 0.00 0.00 0.00 3.36
3191 3290 9.447279 TCATAGGAATAGGAAAGTCATAGGAAA 57.553 33.333 0.00 0.00 0.00 3.13
3194 3293 8.337118 AGGAATAGGAAAGTCATAGGAAATGA 57.663 34.615 0.00 0.00 0.00 2.57
3195 3294 8.435982 AGGAATAGGAAAGTCATAGGAAATGAG 58.564 37.037 0.00 0.00 0.00 2.90
3196 3295 8.432805 GGAATAGGAAAGTCATAGGAAATGAGA 58.567 37.037 0.00 0.00 0.00 3.27
3198 3297 9.790344 AATAGGAAAGTCATAGGAAATGAGATG 57.210 33.333 0.00 0.00 0.00 2.90
3199 3298 7.443302 AGGAAAGTCATAGGAAATGAGATGA 57.557 36.000 0.00 0.00 0.00 2.92
3200 3299 7.278875 AGGAAAGTCATAGGAAATGAGATGAC 58.721 38.462 5.86 5.86 45.57 3.06
3201 3300 7.050377 GGAAAGTCATAGGAAATGAGATGACA 58.950 38.462 14.37 0.00 46.94 3.58
3202 3301 7.718753 GGAAAGTCATAGGAAATGAGATGACAT 59.281 37.037 14.37 1.96 46.94 3.06
3203 3302 8.447924 AAAGTCATAGGAAATGAGATGACATG 57.552 34.615 14.37 0.00 46.94 3.21
3204 3303 5.996513 AGTCATAGGAAATGAGATGACATGC 59.003 40.000 14.37 0.00 46.94 4.06
3205 3304 5.761726 GTCATAGGAAATGAGATGACATGCA 59.238 40.000 8.58 0.00 44.91 3.96
3206 3305 6.430308 GTCATAGGAAATGAGATGACATGCAT 59.570 38.462 8.58 0.00 44.91 3.96
3221 3320 8.929260 ATGACATGCATCTCAAATCCTATAAA 57.071 30.769 8.81 0.00 28.85 1.40
3222 3321 8.929260 TGACATGCATCTCAAATCCTATAAAT 57.071 30.769 1.73 0.00 0.00 1.40
3244 3343 8.470657 AAATAGGAATAGAAAAAGAGATGCCC 57.529 34.615 0.00 0.00 0.00 5.36
3245 3344 5.723860 AGGAATAGAAAAAGAGATGCCCT 57.276 39.130 0.00 0.00 0.00 5.19
3246 3345 6.084749 AGGAATAGAAAAAGAGATGCCCTT 57.915 37.500 0.00 0.00 0.00 3.95
3247 3346 6.497640 AGGAATAGAAAAAGAGATGCCCTTT 58.502 36.000 0.00 0.00 35.55 3.11
3248 3347 6.379417 AGGAATAGAAAAAGAGATGCCCTTTG 59.621 38.462 0.00 0.00 34.42 2.77
3249 3348 6.378280 GGAATAGAAAAAGAGATGCCCTTTGA 59.622 38.462 0.00 0.00 34.42 2.69
3250 3349 7.069208 GGAATAGAAAAAGAGATGCCCTTTGAT 59.931 37.037 0.00 0.00 34.42 2.57
3251 3350 7.968014 ATAGAAAAAGAGATGCCCTTTGATT 57.032 32.000 0.00 0.00 34.42 2.57
3252 3351 6.278172 AGAAAAAGAGATGCCCTTTGATTC 57.722 37.500 0.00 0.00 34.42 2.52
3253 3352 5.776716 AGAAAAAGAGATGCCCTTTGATTCA 59.223 36.000 0.00 0.00 34.42 2.57
3254 3353 5.397142 AAAAGAGATGCCCTTTGATTCAC 57.603 39.130 0.00 0.00 34.42 3.18
3255 3354 3.726557 AGAGATGCCCTTTGATTCACA 57.273 42.857 0.00 0.00 0.00 3.58
3256 3355 3.350833 AGAGATGCCCTTTGATTCACAC 58.649 45.455 0.00 0.00 0.00 3.82
3257 3356 2.424956 GAGATGCCCTTTGATTCACACC 59.575 50.000 0.00 0.00 0.00 4.16
3258 3357 2.170166 GATGCCCTTTGATTCACACCA 58.830 47.619 0.00 0.00 0.00 4.17
3259 3358 2.307496 TGCCCTTTGATTCACACCAT 57.693 45.000 0.00 0.00 0.00 3.55
3260 3359 3.448093 TGCCCTTTGATTCACACCATA 57.552 42.857 0.00 0.00 0.00 2.74
3261 3360 3.355378 TGCCCTTTGATTCACACCATAG 58.645 45.455 0.00 0.00 0.00 2.23
3262 3361 2.689983 GCCCTTTGATTCACACCATAGG 59.310 50.000 0.00 0.00 33.22 2.57
3263 3362 3.624707 GCCCTTTGATTCACACCATAGGA 60.625 47.826 0.00 0.00 34.69 2.94
3264 3363 4.796606 CCCTTTGATTCACACCATAGGAT 58.203 43.478 0.00 0.00 34.69 3.24
3265 3364 5.203528 CCCTTTGATTCACACCATAGGATT 58.796 41.667 0.00 0.00 34.69 3.01
3266 3365 5.658190 CCCTTTGATTCACACCATAGGATTT 59.342 40.000 0.00 0.00 34.69 2.17
3267 3366 6.155049 CCCTTTGATTCACACCATAGGATTTT 59.845 38.462 0.00 0.00 34.69 1.82
3268 3367 7.310609 CCCTTTGATTCACACCATAGGATTTTT 60.311 37.037 0.00 0.00 34.69 1.94
3289 3388 7.630242 TTTTTCCATTGAGTCTAGGCTAATG 57.370 36.000 0.00 8.01 0.00 1.90
3290 3389 5.957771 TTCCATTGAGTCTAGGCTAATGT 57.042 39.130 17.62 0.00 0.00 2.71
3291 3390 5.957771 TCCATTGAGTCTAGGCTAATGTT 57.042 39.130 17.62 0.00 0.00 2.71
3292 3391 6.313519 TCCATTGAGTCTAGGCTAATGTTT 57.686 37.500 17.62 0.00 0.00 2.83
3293 3392 6.115446 TCCATTGAGTCTAGGCTAATGTTTG 58.885 40.000 17.62 8.79 0.00 2.93
3294 3393 5.882557 CCATTGAGTCTAGGCTAATGTTTGT 59.117 40.000 17.62 0.00 0.00 2.83
3295 3394 6.375455 CCATTGAGTCTAGGCTAATGTTTGTT 59.625 38.462 17.62 0.00 0.00 2.83
3296 3395 7.094205 CCATTGAGTCTAGGCTAATGTTTGTTT 60.094 37.037 17.62 0.00 0.00 2.83
3297 3396 7.817418 TTGAGTCTAGGCTAATGTTTGTTTT 57.183 32.000 0.00 0.00 0.00 2.43
3298 3397 7.435068 TGAGTCTAGGCTAATGTTTGTTTTC 57.565 36.000 0.00 0.00 0.00 2.29
3299 3398 6.430000 TGAGTCTAGGCTAATGTTTGTTTTCC 59.570 38.462 0.00 0.00 0.00 3.13
3300 3399 6.543735 AGTCTAGGCTAATGTTTGTTTTCCT 58.456 36.000 0.00 0.00 0.00 3.36
3301 3400 7.686434 AGTCTAGGCTAATGTTTGTTTTCCTA 58.314 34.615 0.00 0.00 0.00 2.94
3302 3401 8.329502 AGTCTAGGCTAATGTTTGTTTTCCTAT 58.670 33.333 0.00 0.00 0.00 2.57
3303 3402 8.398665 GTCTAGGCTAATGTTTGTTTTCCTATG 58.601 37.037 0.00 0.00 0.00 2.23
3304 3403 8.325787 TCTAGGCTAATGTTTGTTTTCCTATGA 58.674 33.333 0.00 0.00 0.00 2.15
3305 3404 7.775053 AGGCTAATGTTTGTTTTCCTATGAA 57.225 32.000 0.00 0.00 0.00 2.57
3306 3405 8.189119 AGGCTAATGTTTGTTTTCCTATGAAA 57.811 30.769 0.00 0.00 38.69 2.69
3307 3406 8.815912 AGGCTAATGTTTGTTTTCCTATGAAAT 58.184 29.630 0.00 0.00 40.08 2.17
3308 3407 8.872845 GGCTAATGTTTGTTTTCCTATGAAATG 58.127 33.333 0.00 0.00 40.08 2.32
3309 3408 9.423061 GCTAATGTTTGTTTTCCTATGAAATGT 57.577 29.630 0.00 0.00 40.08 2.71
3311 3410 8.606040 AATGTTTGTTTTCCTATGAAATGTGG 57.394 30.769 0.00 0.00 40.08 4.17
3312 3411 7.353414 TGTTTGTTTTCCTATGAAATGTGGA 57.647 32.000 0.00 0.00 40.08 4.02
3313 3412 7.432869 TGTTTGTTTTCCTATGAAATGTGGAG 58.567 34.615 0.00 0.00 40.08 3.86
3314 3413 6.588719 TTGTTTTCCTATGAAATGTGGAGG 57.411 37.500 0.00 0.00 40.08 4.30
3315 3414 5.886609 TGTTTTCCTATGAAATGTGGAGGA 58.113 37.500 0.00 0.00 40.08 3.71
3316 3415 6.493166 TGTTTTCCTATGAAATGTGGAGGAT 58.507 36.000 0.00 0.00 40.08 3.24
3317 3416 7.638444 TGTTTTCCTATGAAATGTGGAGGATA 58.362 34.615 0.00 0.00 40.08 2.59
3318 3417 7.775093 TGTTTTCCTATGAAATGTGGAGGATAG 59.225 37.037 0.00 0.00 40.08 2.08
3319 3418 6.439636 TTCCTATGAAATGTGGAGGATAGG 57.560 41.667 0.00 0.00 36.22 2.57
3320 3419 5.726560 TCCTATGAAATGTGGAGGATAGGA 58.273 41.667 0.00 0.00 39.29 2.94
3321 3420 6.150332 TCCTATGAAATGTGGAGGATAGGAA 58.850 40.000 0.00 0.00 38.86 3.36
3322 3421 6.270927 TCCTATGAAATGTGGAGGATAGGAAG 59.729 42.308 0.00 0.00 38.86 3.46
3323 3422 6.270927 CCTATGAAATGTGGAGGATAGGAAGA 59.729 42.308 0.00 0.00 36.16 2.87
3324 3423 6.581388 ATGAAATGTGGAGGATAGGAAGAA 57.419 37.500 0.00 0.00 0.00 2.52
3325 3424 6.581388 TGAAATGTGGAGGATAGGAAGAAT 57.419 37.500 0.00 0.00 0.00 2.40
3326 3425 6.973642 TGAAATGTGGAGGATAGGAAGAATT 58.026 36.000 0.00 0.00 0.00 2.17
3327 3426 7.056635 TGAAATGTGGAGGATAGGAAGAATTC 58.943 38.462 0.00 0.00 46.67 2.17
3364 3463 7.232118 AGGATTTCATTCCTACAAACCAAAG 57.768 36.000 0.00 0.00 44.50 2.77
3365 3464 7.010160 AGGATTTCATTCCTACAAACCAAAGA 58.990 34.615 0.00 0.00 44.50 2.52
3366 3465 7.177392 AGGATTTCATTCCTACAAACCAAAGAG 59.823 37.037 0.00 0.00 44.50 2.85
3367 3466 5.705609 TTCATTCCTACAAACCAAAGAGC 57.294 39.130 0.00 0.00 0.00 4.09
3368 3467 4.985538 TCATTCCTACAAACCAAAGAGCT 58.014 39.130 0.00 0.00 0.00 4.09
3369 3468 5.003804 TCATTCCTACAAACCAAAGAGCTC 58.996 41.667 5.27 5.27 0.00 4.09
3370 3469 4.706842 TTCCTACAAACCAAAGAGCTCT 57.293 40.909 11.45 11.45 0.00 4.09
3371 3470 4.008074 TCCTACAAACCAAAGAGCTCTG 57.992 45.455 19.06 7.57 0.00 3.35
3372 3471 3.646162 TCCTACAAACCAAAGAGCTCTGA 59.354 43.478 19.06 2.19 0.00 3.27
3373 3472 4.102524 TCCTACAAACCAAAGAGCTCTGAA 59.897 41.667 19.06 0.00 0.00 3.02
3374 3473 4.453819 CCTACAAACCAAAGAGCTCTGAAG 59.546 45.833 19.06 11.19 0.00 3.02
3375 3474 3.217626 ACAAACCAAAGAGCTCTGAAGG 58.782 45.455 19.06 20.58 0.00 3.46
3376 3475 3.117888 ACAAACCAAAGAGCTCTGAAGGA 60.118 43.478 27.00 0.00 0.00 3.36
3377 3476 3.864789 AACCAAAGAGCTCTGAAGGAA 57.135 42.857 27.00 0.00 0.00 3.36
3378 3477 4.379302 AACCAAAGAGCTCTGAAGGAAT 57.621 40.909 27.00 16.39 0.00 3.01
3379 3478 4.379302 ACCAAAGAGCTCTGAAGGAATT 57.621 40.909 27.00 11.51 0.00 2.17
3380 3479 4.734266 ACCAAAGAGCTCTGAAGGAATTT 58.266 39.130 27.00 10.86 0.00 1.82
3381 3480 5.143369 ACCAAAGAGCTCTGAAGGAATTTT 58.857 37.500 27.00 10.23 0.00 1.82
3382 3481 5.600069 ACCAAAGAGCTCTGAAGGAATTTTT 59.400 36.000 27.00 9.59 0.00 1.94
3383 3482 6.155136 CCAAAGAGCTCTGAAGGAATTTTTC 58.845 40.000 19.06 0.00 0.00 2.29
3423 3522 9.942526 ATCCTATGAAAATCCTACAAAATTCCT 57.057 29.630 0.00 0.00 0.00 3.36
3424 3523 9.408648 TCCTATGAAAATCCTACAAAATTCCTC 57.591 33.333 0.00 0.00 0.00 3.71
3425 3524 8.633561 CCTATGAAAATCCTACAAAATTCCTCC 58.366 37.037 0.00 0.00 0.00 4.30
3426 3525 9.189156 CTATGAAAATCCTACAAAATTCCTCCA 57.811 33.333 0.00 0.00 0.00 3.86
3427 3526 7.847711 TGAAAATCCTACAAAATTCCTCCAA 57.152 32.000 0.00 0.00 0.00 3.53
3428 3527 8.256356 TGAAAATCCTACAAAATTCCTCCAAA 57.744 30.769 0.00 0.00 0.00 3.28
3429 3528 8.147704 TGAAAATCCTACAAAATTCCTCCAAAC 58.852 33.333 0.00 0.00 0.00 2.93
3430 3529 6.605471 AATCCTACAAAATTCCTCCAAACC 57.395 37.500 0.00 0.00 0.00 3.27
3431 3530 5.068215 TCCTACAAAATTCCTCCAAACCA 57.932 39.130 0.00 0.00 0.00 3.67
3432 3531 5.459505 TCCTACAAAATTCCTCCAAACCAA 58.540 37.500 0.00 0.00 0.00 3.67
3433 3532 5.900123 TCCTACAAAATTCCTCCAAACCAAA 59.100 36.000 0.00 0.00 0.00 3.28
3434 3533 6.041523 TCCTACAAAATTCCTCCAAACCAAAG 59.958 38.462 0.00 0.00 0.00 2.77
3435 3534 5.034852 ACAAAATTCCTCCAAACCAAAGG 57.965 39.130 0.00 0.00 0.00 3.11
3436 3535 4.719273 ACAAAATTCCTCCAAACCAAAGGA 59.281 37.500 0.00 0.00 37.42 3.36
3449 3548 5.531122 AACCAAAGGAGGCTTAGTTTTTC 57.469 39.130 0.00 0.00 0.00 2.29
3480 3579 4.221924 GCTTACCACCCACCAAATTGTAAT 59.778 41.667 0.00 0.00 0.00 1.89
3529 3633 2.475339 TTGCATCAATTAGCCCCCAT 57.525 45.000 0.00 0.00 0.00 4.00
3564 3695 2.604914 CCAGTTAAGCAGCTGACGTATG 59.395 50.000 20.43 8.03 35.12 2.39
3573 3704 1.733912 AGCTGACGTATGCAACACATG 59.266 47.619 13.54 0.00 40.06 3.21
3579 3710 4.453819 TGACGTATGCAACACATGAATGAA 59.546 37.500 0.00 0.00 40.06 2.57
3580 3711 4.973396 ACGTATGCAACACATGAATGAAG 58.027 39.130 0.00 0.00 40.06 3.02
3581 3712 4.455533 ACGTATGCAACACATGAATGAAGT 59.544 37.500 0.00 0.00 40.06 3.01
3582 3713 5.641636 ACGTATGCAACACATGAATGAAGTA 59.358 36.000 0.00 0.00 40.06 2.24
3583 3714 6.183360 ACGTATGCAACACATGAATGAAGTAG 60.183 38.462 0.00 0.00 40.06 2.57
3584 3715 5.571784 ATGCAACACATGAATGAAGTAGG 57.428 39.130 0.00 0.00 37.70 3.18
3610 3741 8.621532 AGTAGTAGTGAAATGCAATCTTTTCA 57.378 30.769 8.73 8.73 41.27 2.69
3611 3742 9.066892 AGTAGTAGTGAAATGCAATCTTTTCAA 57.933 29.630 13.33 0.00 43.44 2.69
3641 3805 3.056962 AGAGACGCCATCACATATGCTAG 60.057 47.826 1.58 0.00 0.00 3.42
3645 3809 3.574396 ACGCCATCACATATGCTAGTACT 59.426 43.478 1.58 0.00 0.00 2.73
3646 3810 4.765339 ACGCCATCACATATGCTAGTACTA 59.235 41.667 1.58 1.89 0.00 1.82
3647 3811 5.419155 ACGCCATCACATATGCTAGTACTAT 59.581 40.000 2.33 0.00 0.00 2.12
3680 3847 6.653526 TCAAAGGCATGAAAAGAATCAAGA 57.346 33.333 0.00 0.00 32.06 3.02
3684 3851 7.765695 AAGGCATGAAAAGAATCAAGAACTA 57.234 32.000 0.00 0.00 32.06 2.24
3685 3852 7.388460 AGGCATGAAAAGAATCAAGAACTAG 57.612 36.000 0.00 0.00 32.06 2.57
3686 3853 6.944862 AGGCATGAAAAGAATCAAGAACTAGT 59.055 34.615 0.00 0.00 32.06 2.57
3687 3854 8.103305 AGGCATGAAAAGAATCAAGAACTAGTA 58.897 33.333 0.00 0.00 32.06 1.82
3709 3876 2.916735 CTTGCAAGCAAAGAAAAGCG 57.083 45.000 14.65 0.00 35.33 4.68
3719 3886 3.371168 CAAAGAAAAGCGCTGCAAGTAA 58.629 40.909 12.58 0.00 35.30 2.24
3940 4112 0.528470 CCTCTTCCGCTTCTTCGTCT 59.472 55.000 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
739 758 3.266772 TGGATGTCTGTATTGAAGGCCTT 59.733 43.478 20.65 20.65 0.00 4.35
840 866 7.446106 TGAAAGAAGCCTATAAGGTCCAATA 57.554 36.000 0.00 0.00 37.80 1.90
842 868 5.772393 TGAAAGAAGCCTATAAGGTCCAA 57.228 39.130 0.00 0.00 37.80 3.53
886 912 6.491403 GGGCCAGATGAACATGATTAGTATTT 59.509 38.462 4.39 0.00 0.00 1.40
938 964 5.003160 GGGGCTGTTTGCATTATTCTTTTT 58.997 37.500 0.00 0.00 45.15 1.94
943 969 3.608316 TTGGGGCTGTTTGCATTATTC 57.392 42.857 0.00 0.00 45.15 1.75
944 970 4.071423 GTTTTGGGGCTGTTTGCATTATT 58.929 39.130 0.00 0.00 45.15 1.40
945 971 3.558958 GGTTTTGGGGCTGTTTGCATTAT 60.559 43.478 0.00 0.00 45.15 1.28
946 972 2.224402 GGTTTTGGGGCTGTTTGCATTA 60.224 45.455 0.00 0.00 45.15 1.90
1290 1317 1.070786 GACGGTGGAAGCAACAGGA 59.929 57.895 0.00 0.00 0.00 3.86
1426 1453 1.004560 ACATCACTGAGCCACCACG 60.005 57.895 0.00 0.00 0.00 4.94
1437 1464 1.673033 GCCAAGTGCGTAGACATCACT 60.673 52.381 0.00 0.00 42.28 3.41
1568 1617 4.993584 AGAATCACAACAGCACACTAAGAG 59.006 41.667 0.00 0.00 0.00 2.85
1593 1642 1.372499 ACGACCATTGACGACGGTG 60.372 57.895 0.00 0.00 31.63 4.94
1647 1697 2.684927 GCATCCAAACCCTACTGCTGAT 60.685 50.000 0.00 0.00 0.00 2.90
1667 1717 2.034104 TCATGATCCTCACAGCAAGC 57.966 50.000 0.00 0.00 0.00 4.01
1668 1718 3.945921 ACATTCATGATCCTCACAGCAAG 59.054 43.478 0.00 0.00 0.00 4.01
1669 1719 3.943381 GACATTCATGATCCTCACAGCAA 59.057 43.478 0.00 0.00 0.00 3.91
1678 1728 7.169308 GCAAAATGAGATTGACATTCATGATCC 59.831 37.037 0.00 0.00 37.04 3.36
1689 1739 4.698583 AGAGCAGCAAAATGAGATTGAC 57.301 40.909 0.00 0.00 0.00 3.18
1692 1742 5.184340 GCATAGAGCAGCAAAATGAGATT 57.816 39.130 0.00 0.00 44.79 2.40
1726 1776 9.859427 CTATCAAGATCCAGTCATTCTAGATTC 57.141 37.037 0.00 0.00 0.00 2.52
1734 1784 6.102321 ACAATCCCTATCAAGATCCAGTCATT 59.898 38.462 0.00 0.00 0.00 2.57
1747 1797 5.820423 CGATAACCAAACACAATCCCTATCA 59.180 40.000 0.00 0.00 0.00 2.15
1787 1837 6.378280 TGAGAGAGATACATGCAAGTACAGAA 59.622 38.462 3.52 0.00 0.00 3.02
1879 1937 1.270041 GCCTCTAGCATAGCCACAGAC 60.270 57.143 0.00 0.00 42.97 3.51
2161 2221 5.476599 AGAAACACAATAGCACAATAGCCAA 59.523 36.000 0.00 0.00 34.23 4.52
2454 2514 5.716228 TCCAGTGAAATGGAAAACTATGCAT 59.284 36.000 3.79 3.79 46.45 3.96
2506 2566 3.196039 CAGAACATGATTTTGCCCATGGA 59.804 43.478 15.22 0.00 43.16 3.41
2574 2635 8.755696 AATTAATTGACGCATTTAACATGTGT 57.244 26.923 0.00 13.21 44.39 3.72
2679 2741 8.073768 TGAAAGAAATTCTTAAGTTTACGGCTG 58.926 33.333 8.83 0.00 35.27 4.85
2693 2755 7.423844 AAACAACCTTCCTGAAAGAAATTCT 57.576 32.000 0.00 0.00 38.92 2.40
2701 2763 3.132111 GCTCCAAAACAACCTTCCTGAAA 59.868 43.478 0.00 0.00 0.00 2.69
2721 2783 3.626930 TGTCACAAAAACACCCTAAGCT 58.373 40.909 0.00 0.00 0.00 3.74
2757 2820 1.133976 GCACAGAGAATGGTAGGGCAT 60.134 52.381 0.00 0.00 0.00 4.40
2758 2821 0.253044 GCACAGAGAATGGTAGGGCA 59.747 55.000 0.00 0.00 0.00 5.36
2759 2822 0.253044 TGCACAGAGAATGGTAGGGC 59.747 55.000 0.00 0.00 0.00 5.19
2760 2823 1.134280 CCTGCACAGAGAATGGTAGGG 60.134 57.143 0.00 0.00 32.24 3.53
2761 2824 1.745141 GCCTGCACAGAGAATGGTAGG 60.745 57.143 0.00 0.00 36.06 3.18
2762 2825 1.661341 GCCTGCACAGAGAATGGTAG 58.339 55.000 0.00 0.00 0.00 3.18
2786 2849 0.606130 TGAGCATTTCCAGCTTCGCA 60.606 50.000 0.00 0.00 43.58 5.10
2804 2867 2.742372 CCCTTCCCACGACGCTTG 60.742 66.667 0.00 0.00 0.00 4.01
2807 2870 4.754667 GGACCCTTCCCACGACGC 62.755 72.222 0.00 0.00 35.57 5.19
2871 2934 6.923508 ACTAAAATTAAACAGAAGCAAGGCAC 59.076 34.615 0.00 0.00 0.00 5.01
2917 2980 2.384382 AGTTTCGCAGCAAACATTTCG 58.616 42.857 17.38 0.00 38.53 3.46
2948 3011 7.472334 ACAAAATGAAGCTTGATTGACCTAT 57.528 32.000 12.08 0.00 0.00 2.57
2956 3049 9.415544 GAAATCAGTAACAAAATGAAGCTTGAT 57.584 29.630 2.10 0.00 0.00 2.57
2960 3053 5.858581 GCGAAATCAGTAACAAAATGAAGCT 59.141 36.000 0.00 0.00 0.00 3.74
2973 3066 2.746904 CACACCCATTGCGAAATCAGTA 59.253 45.455 0.00 0.00 0.00 2.74
2976 3069 0.243365 GCACACCCATTGCGAAATCA 59.757 50.000 0.00 0.00 0.00 2.57
2982 3075 0.109597 GAAGAAGCACACCCATTGCG 60.110 55.000 0.00 0.00 45.15 4.85
2992 3088 5.061560 CGAGTAATCAGACAAGAAGAAGCAC 59.938 44.000 0.00 0.00 0.00 4.40
2995 3091 7.169982 ACAAACGAGTAATCAGACAAGAAGAAG 59.830 37.037 0.00 0.00 0.00 2.85
3003 3099 6.649141 AGCATAAACAAACGAGTAATCAGACA 59.351 34.615 0.00 0.00 0.00 3.41
3010 3109 7.307751 CCAGAAGAAGCATAAACAAACGAGTAA 60.308 37.037 0.00 0.00 0.00 2.24
3011 3110 6.147164 CCAGAAGAAGCATAAACAAACGAGTA 59.853 38.462 0.00 0.00 0.00 2.59
3020 3119 5.713025 TGCATTTCCAGAAGAAGCATAAAC 58.287 37.500 0.00 0.00 32.41 2.01
3029 3128 5.945191 TGATGTGTATTGCATTTCCAGAAGA 59.055 36.000 0.00 0.00 0.00 2.87
3035 3134 4.374843 TGCTGATGTGTATTGCATTTCC 57.625 40.909 0.00 0.00 0.00 3.13
3091 3190 9.263538 TGTAACAATAGTGTCAATTAAACGTCT 57.736 29.630 0.00 0.00 36.80 4.18
3092 3191 9.525007 CTGTAACAATAGTGTCAATTAAACGTC 57.475 33.333 0.00 0.00 36.80 4.34
3093 3192 9.263538 TCTGTAACAATAGTGTCAATTAAACGT 57.736 29.630 0.00 0.00 36.80 3.99
3094 3193 9.741168 CTCTGTAACAATAGTGTCAATTAAACG 57.259 33.333 0.00 0.00 36.80 3.60
3096 3195 9.787435 ACCTCTGTAACAATAGTGTCAATTAAA 57.213 29.630 0.00 0.00 36.80 1.52
3099 3198 7.549488 GCTACCTCTGTAACAATAGTGTCAATT 59.451 37.037 0.00 0.00 36.80 2.32
3100 3199 7.042335 GCTACCTCTGTAACAATAGTGTCAAT 58.958 38.462 0.00 0.00 36.80 2.57
3101 3200 6.014925 TGCTACCTCTGTAACAATAGTGTCAA 60.015 38.462 0.00 0.00 36.80 3.18
3102 3201 5.479027 TGCTACCTCTGTAACAATAGTGTCA 59.521 40.000 0.00 0.00 36.80 3.58
3103 3202 5.962433 TGCTACCTCTGTAACAATAGTGTC 58.038 41.667 0.00 0.00 36.80 3.67
3104 3203 5.995565 TGCTACCTCTGTAACAATAGTGT 57.004 39.130 0.00 0.00 40.75 3.55
3105 3204 8.198109 ACTAATGCTACCTCTGTAACAATAGTG 58.802 37.037 4.09 0.00 37.91 2.74
3106 3205 8.307582 ACTAATGCTACCTCTGTAACAATAGT 57.692 34.615 0.00 0.00 36.01 2.12
3107 3206 9.601217 AAACTAATGCTACCTCTGTAACAATAG 57.399 33.333 0.00 0.00 34.70 1.73
3108 3207 9.953565 AAAACTAATGCTACCTCTGTAACAATA 57.046 29.630 0.00 0.00 0.00 1.90
3109 3208 8.863872 AAAACTAATGCTACCTCTGTAACAAT 57.136 30.769 0.00 0.00 0.00 2.71
3110 3209 9.431887 CTAAAACTAATGCTACCTCTGTAACAA 57.568 33.333 0.00 0.00 0.00 2.83
3111 3210 8.038944 CCTAAAACTAATGCTACCTCTGTAACA 58.961 37.037 0.00 0.00 0.00 2.41
3112 3211 7.011202 GCCTAAAACTAATGCTACCTCTGTAAC 59.989 40.741 0.00 0.00 0.00 2.50
3113 3212 7.046033 GCCTAAAACTAATGCTACCTCTGTAA 58.954 38.462 0.00 0.00 0.00 2.41
3114 3213 6.407752 GGCCTAAAACTAATGCTACCTCTGTA 60.408 42.308 0.00 0.00 0.00 2.74
3115 3214 5.429130 GCCTAAAACTAATGCTACCTCTGT 58.571 41.667 0.00 0.00 0.00 3.41
3116 3215 4.816925 GGCCTAAAACTAATGCTACCTCTG 59.183 45.833 0.00 0.00 0.00 3.35
3117 3216 4.722279 AGGCCTAAAACTAATGCTACCTCT 59.278 41.667 1.29 0.00 0.00 3.69
3118 3217 5.037383 AGGCCTAAAACTAATGCTACCTC 57.963 43.478 1.29 0.00 0.00 3.85
3119 3218 4.141459 GGAGGCCTAAAACTAATGCTACCT 60.141 45.833 4.42 0.00 0.00 3.08
3120 3219 4.135306 GGAGGCCTAAAACTAATGCTACC 58.865 47.826 4.42 0.00 0.00 3.18
3121 3220 5.037383 AGGAGGCCTAAAACTAATGCTAC 57.963 43.478 4.42 0.00 28.47 3.58
3122 3221 5.710409 AAGGAGGCCTAAAACTAATGCTA 57.290 39.130 4.42 0.00 31.13 3.49
3123 3222 4.592997 AAGGAGGCCTAAAACTAATGCT 57.407 40.909 4.42 0.00 31.13 3.79
3124 3223 4.142160 CCAAAGGAGGCCTAAAACTAATGC 60.142 45.833 4.42 0.00 31.13 3.56
3125 3224 5.016831 ACCAAAGGAGGCCTAAAACTAATG 58.983 41.667 4.42 5.27 31.13 1.90
3126 3225 5.270979 ACCAAAGGAGGCCTAAAACTAAT 57.729 39.130 4.42 0.00 31.13 1.73
3127 3226 4.734843 ACCAAAGGAGGCCTAAAACTAA 57.265 40.909 4.42 0.00 31.13 2.24
3128 3227 4.105057 TGAACCAAAGGAGGCCTAAAACTA 59.895 41.667 4.42 0.00 31.13 2.24
3129 3228 3.117284 TGAACCAAAGGAGGCCTAAAACT 60.117 43.478 4.42 0.00 31.13 2.66
3130 3229 3.227614 TGAACCAAAGGAGGCCTAAAAC 58.772 45.455 4.42 0.00 31.13 2.43
3131 3230 3.603965 TGAACCAAAGGAGGCCTAAAA 57.396 42.857 4.42 0.00 31.13 1.52
3132 3231 3.825908 ATGAACCAAAGGAGGCCTAAA 57.174 42.857 4.42 0.00 31.13 1.85
3133 3232 3.202151 CCTATGAACCAAAGGAGGCCTAA 59.798 47.826 4.42 0.00 31.13 2.69
3134 3233 2.777692 CCTATGAACCAAAGGAGGCCTA 59.222 50.000 4.42 0.00 31.13 3.93
3135 3234 1.566231 CCTATGAACCAAAGGAGGCCT 59.434 52.381 3.86 3.86 33.87 5.19
3136 3235 1.564348 TCCTATGAACCAAAGGAGGCC 59.436 52.381 0.00 0.00 34.46 5.19
3137 3236 3.584733 ATCCTATGAACCAAAGGAGGC 57.415 47.619 0.00 0.00 42.53 4.70
3138 3237 4.079787 TCCAATCCTATGAACCAAAGGAGG 60.080 45.833 0.00 0.00 42.53 4.30
3139 3238 5.116084 TCCAATCCTATGAACCAAAGGAG 57.884 43.478 0.00 0.00 42.53 3.69
3140 3239 5.528600 TTCCAATCCTATGAACCAAAGGA 57.471 39.130 0.00 0.00 43.38 3.36
3141 3240 6.603940 TTTTCCAATCCTATGAACCAAAGG 57.396 37.500 0.00 0.00 0.00 3.11
3142 3241 7.839907 TGATTTTCCAATCCTATGAACCAAAG 58.160 34.615 0.00 0.00 38.50 2.77
3143 3242 7.789202 TGATTTTCCAATCCTATGAACCAAA 57.211 32.000 0.00 0.00 38.50 3.28
3144 3243 7.976414 ATGATTTTCCAATCCTATGAACCAA 57.024 32.000 0.00 0.00 38.50 3.67
3145 3244 7.725397 CCTATGATTTTCCAATCCTATGAACCA 59.275 37.037 0.00 0.00 38.50 3.67
3146 3245 7.944554 TCCTATGATTTTCCAATCCTATGAACC 59.055 37.037 0.00 0.00 38.50 3.62
3147 3246 8.924511 TCCTATGATTTTCCAATCCTATGAAC 57.075 34.615 0.00 0.00 38.50 3.18
3152 3251 9.405369 TCCTATTCCTATGATTTTCCAATCCTA 57.595 33.333 0.00 0.00 38.50 2.94
3153 3252 8.293027 TCCTATTCCTATGATTTTCCAATCCT 57.707 34.615 0.00 0.00 38.50 3.24
3154 3253 8.940397 TTCCTATTCCTATGATTTTCCAATCC 57.060 34.615 0.00 0.00 38.50 3.01
3156 3255 9.942526 ACTTTCCTATTCCTATGATTTTCCAAT 57.057 29.630 0.00 0.00 0.00 3.16
3157 3256 9.408648 GACTTTCCTATTCCTATGATTTTCCAA 57.591 33.333 0.00 0.00 0.00 3.53
3158 3257 8.556589 TGACTTTCCTATTCCTATGATTTTCCA 58.443 33.333 0.00 0.00 0.00 3.53
3159 3258 8.980481 TGACTTTCCTATTCCTATGATTTTCC 57.020 34.615 0.00 0.00 0.00 3.13
3163 3262 9.621239 TCCTATGACTTTCCTATTCCTATGATT 57.379 33.333 0.00 0.00 0.00 2.57
3164 3263 9.621239 TTCCTATGACTTTCCTATTCCTATGAT 57.379 33.333 0.00 0.00 0.00 2.45
3165 3264 9.447279 TTTCCTATGACTTTCCTATTCCTATGA 57.553 33.333 0.00 0.00 0.00 2.15
3168 3267 9.447279 TCATTTCCTATGACTTTCCTATTCCTA 57.553 33.333 0.00 0.00 0.00 2.94
3169 3268 8.337118 TCATTTCCTATGACTTTCCTATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
3170 3269 8.432805 TCTCATTTCCTATGACTTTCCTATTCC 58.567 37.037 0.00 0.00 0.00 3.01
3172 3271 9.790344 CATCTCATTTCCTATGACTTTCCTATT 57.210 33.333 0.00 0.00 0.00 1.73
3173 3272 9.163894 TCATCTCATTTCCTATGACTTTCCTAT 57.836 33.333 0.00 0.00 0.00 2.57
3174 3273 8.424918 GTCATCTCATTTCCTATGACTTTCCTA 58.575 37.037 0.00 0.00 43.07 2.94
3175 3274 7.092712 TGTCATCTCATTTCCTATGACTTTCCT 60.093 37.037 13.59 0.00 45.40 3.36
3176 3275 7.050377 TGTCATCTCATTTCCTATGACTTTCC 58.950 38.462 13.59 0.00 45.40 3.13
3177 3276 8.557864 CATGTCATCTCATTTCCTATGACTTTC 58.442 37.037 13.59 0.00 45.40 2.62
3178 3277 7.013083 GCATGTCATCTCATTTCCTATGACTTT 59.987 37.037 13.59 1.75 45.40 2.66
3179 3278 6.485984 GCATGTCATCTCATTTCCTATGACTT 59.514 38.462 13.59 6.42 45.40 3.01
3180 3279 5.996513 GCATGTCATCTCATTTCCTATGACT 59.003 40.000 13.59 0.19 45.40 3.41
3181 3280 5.761726 TGCATGTCATCTCATTTCCTATGAC 59.238 40.000 7.23 7.23 45.40 3.06
3182 3281 5.932455 TGCATGTCATCTCATTTCCTATGA 58.068 37.500 0.00 0.00 0.00 2.15
3183 3282 6.819397 ATGCATGTCATCTCATTTCCTATG 57.181 37.500 0.00 0.00 0.00 2.23
3196 3295 8.929260 TTTATAGGATTTGAGATGCATGTCAT 57.071 30.769 25.41 13.07 38.32 3.06
3197 3296 8.929260 ATTTATAGGATTTGAGATGCATGTCA 57.071 30.769 21.70 21.70 0.00 3.58
3218 3317 9.574516 GGGCATCTCTTTTTCTATTCCTATTTA 57.425 33.333 0.00 0.00 0.00 1.40
3219 3318 8.285163 AGGGCATCTCTTTTTCTATTCCTATTT 58.715 33.333 0.00 0.00 0.00 1.40
3220 3319 7.820532 AGGGCATCTCTTTTTCTATTCCTATT 58.179 34.615 0.00 0.00 0.00 1.73
3221 3320 7.399674 AGGGCATCTCTTTTTCTATTCCTAT 57.600 36.000 0.00 0.00 0.00 2.57
3222 3321 6.831664 AGGGCATCTCTTTTTCTATTCCTA 57.168 37.500 0.00 0.00 0.00 2.94
3223 3322 5.723860 AGGGCATCTCTTTTTCTATTCCT 57.276 39.130 0.00 0.00 0.00 3.36
3224 3323 6.378280 TCAAAGGGCATCTCTTTTTCTATTCC 59.622 38.462 0.00 0.00 32.72 3.01
3225 3324 7.396540 TCAAAGGGCATCTCTTTTTCTATTC 57.603 36.000 0.00 0.00 32.72 1.75
3226 3325 7.968014 ATCAAAGGGCATCTCTTTTTCTATT 57.032 32.000 0.00 0.00 32.72 1.73
3227 3326 7.616935 TGAATCAAAGGGCATCTCTTTTTCTAT 59.383 33.333 5.65 0.00 32.72 1.98
3228 3327 6.947733 TGAATCAAAGGGCATCTCTTTTTCTA 59.052 34.615 5.65 0.00 32.72 2.10
3229 3328 5.776716 TGAATCAAAGGGCATCTCTTTTTCT 59.223 36.000 5.65 0.00 32.72 2.52
3230 3329 5.866092 GTGAATCAAAGGGCATCTCTTTTTC 59.134 40.000 0.00 0.00 32.72 2.29
3231 3330 5.305128 TGTGAATCAAAGGGCATCTCTTTTT 59.695 36.000 0.00 0.00 32.72 1.94
3232 3331 4.834496 TGTGAATCAAAGGGCATCTCTTTT 59.166 37.500 0.00 0.00 32.72 2.27
3233 3332 4.219288 GTGTGAATCAAAGGGCATCTCTTT 59.781 41.667 0.00 0.00 35.09 2.52
3234 3333 3.760684 GTGTGAATCAAAGGGCATCTCTT 59.239 43.478 0.00 0.00 0.00 2.85
3235 3334 3.350833 GTGTGAATCAAAGGGCATCTCT 58.649 45.455 0.00 0.00 0.00 3.10
3236 3335 2.424956 GGTGTGAATCAAAGGGCATCTC 59.575 50.000 0.00 0.00 0.00 2.75
3237 3336 2.225091 TGGTGTGAATCAAAGGGCATCT 60.225 45.455 0.00 0.00 0.00 2.90
3238 3337 2.170166 TGGTGTGAATCAAAGGGCATC 58.830 47.619 0.00 0.00 0.00 3.91
3239 3338 2.307496 TGGTGTGAATCAAAGGGCAT 57.693 45.000 0.00 0.00 0.00 4.40
3240 3339 2.307496 ATGGTGTGAATCAAAGGGCA 57.693 45.000 0.00 0.00 0.00 5.36
3241 3340 2.689983 CCTATGGTGTGAATCAAAGGGC 59.310 50.000 0.00 0.00 0.00 5.19
3242 3341 4.235079 TCCTATGGTGTGAATCAAAGGG 57.765 45.455 0.00 0.00 0.00 3.95
3243 3342 6.780457 AAATCCTATGGTGTGAATCAAAGG 57.220 37.500 0.00 0.00 0.00 3.11
3265 3364 7.175104 ACATTAGCCTAGACTCAATGGAAAAA 58.825 34.615 0.00 0.00 32.20 1.94
3266 3365 6.721318 ACATTAGCCTAGACTCAATGGAAAA 58.279 36.000 0.00 0.00 32.20 2.29
3267 3366 6.313519 ACATTAGCCTAGACTCAATGGAAA 57.686 37.500 0.00 0.00 32.20 3.13
3268 3367 5.957771 ACATTAGCCTAGACTCAATGGAA 57.042 39.130 0.00 0.00 32.20 3.53
3269 3368 5.957771 AACATTAGCCTAGACTCAATGGA 57.042 39.130 0.00 0.00 32.20 3.41
3270 3369 5.882557 ACAAACATTAGCCTAGACTCAATGG 59.117 40.000 0.00 0.00 32.20 3.16
3271 3370 6.992063 ACAAACATTAGCCTAGACTCAATG 57.008 37.500 0.00 0.00 33.75 2.82
3272 3371 8.409358 AAAACAAACATTAGCCTAGACTCAAT 57.591 30.769 0.00 0.00 0.00 2.57
3273 3372 7.040686 GGAAAACAAACATTAGCCTAGACTCAA 60.041 37.037 0.00 0.00 0.00 3.02
3274 3373 6.430000 GGAAAACAAACATTAGCCTAGACTCA 59.570 38.462 0.00 0.00 0.00 3.41
3275 3374 6.655425 AGGAAAACAAACATTAGCCTAGACTC 59.345 38.462 0.00 0.00 0.00 3.36
3276 3375 6.543735 AGGAAAACAAACATTAGCCTAGACT 58.456 36.000 0.00 0.00 0.00 3.24
3277 3376 6.819397 AGGAAAACAAACATTAGCCTAGAC 57.181 37.500 0.00 0.00 0.00 2.59
3278 3377 8.325787 TCATAGGAAAACAAACATTAGCCTAGA 58.674 33.333 0.00 0.00 31.03 2.43
3279 3378 8.506168 TCATAGGAAAACAAACATTAGCCTAG 57.494 34.615 0.00 0.00 31.03 3.02
3280 3379 8.871629 TTCATAGGAAAACAAACATTAGCCTA 57.128 30.769 0.00 0.00 0.00 3.93
3281 3380 7.775053 TTCATAGGAAAACAAACATTAGCCT 57.225 32.000 0.00 0.00 0.00 4.58
3282 3381 8.872845 CATTTCATAGGAAAACAAACATTAGCC 58.127 33.333 6.65 0.00 45.52 3.93
3283 3382 9.423061 ACATTTCATAGGAAAACAAACATTAGC 57.577 29.630 6.65 0.00 45.52 3.09
3285 3384 9.703892 CCACATTTCATAGGAAAACAAACATTA 57.296 29.630 6.65 0.00 45.52 1.90
3286 3385 8.428063 TCCACATTTCATAGGAAAACAAACATT 58.572 29.630 6.65 0.00 45.52 2.71
3287 3386 7.961351 TCCACATTTCATAGGAAAACAAACAT 58.039 30.769 6.65 0.00 45.52 2.71
3288 3387 7.353414 TCCACATTTCATAGGAAAACAAACA 57.647 32.000 6.65 0.00 45.52 2.83
3289 3388 6.868339 CCTCCACATTTCATAGGAAAACAAAC 59.132 38.462 6.65 0.00 45.52 2.93
3290 3389 6.780031 TCCTCCACATTTCATAGGAAAACAAA 59.220 34.615 6.65 0.00 45.52 2.83
3291 3390 6.310941 TCCTCCACATTTCATAGGAAAACAA 58.689 36.000 6.65 0.00 45.52 2.83
3292 3391 5.886609 TCCTCCACATTTCATAGGAAAACA 58.113 37.500 6.65 0.00 45.52 2.83
3293 3392 7.229506 CCTATCCTCCACATTTCATAGGAAAAC 59.770 40.741 6.65 0.00 45.52 2.43
3294 3393 7.128728 TCCTATCCTCCACATTTCATAGGAAAA 59.871 37.037 6.65 0.00 45.52 2.29
3295 3394 6.619437 TCCTATCCTCCACATTTCATAGGAAA 59.381 38.462 4.85 4.85 46.36 3.13
3296 3395 6.150332 TCCTATCCTCCACATTTCATAGGAA 58.850 40.000 3.47 0.00 39.17 3.36
3297 3396 5.726560 TCCTATCCTCCACATTTCATAGGA 58.273 41.667 2.01 2.01 39.61 2.94
3298 3397 6.270927 TCTTCCTATCCTCCACATTTCATAGG 59.729 42.308 0.00 0.00 35.93 2.57
3299 3398 7.308450 TCTTCCTATCCTCCACATTTCATAG 57.692 40.000 0.00 0.00 0.00 2.23
3300 3399 7.690454 TTCTTCCTATCCTCCACATTTCATA 57.310 36.000 0.00 0.00 0.00 2.15
3301 3400 6.581388 TTCTTCCTATCCTCCACATTTCAT 57.419 37.500 0.00 0.00 0.00 2.57
3302 3401 6.581388 ATTCTTCCTATCCTCCACATTTCA 57.419 37.500 0.00 0.00 0.00 2.69
3303 3402 6.488344 GGAATTCTTCCTATCCTCCACATTTC 59.512 42.308 5.23 0.00 46.57 2.17
3304 3403 6.368805 GGAATTCTTCCTATCCTCCACATTT 58.631 40.000 5.23 0.00 46.57 2.32
3305 3404 5.946486 GGAATTCTTCCTATCCTCCACATT 58.054 41.667 5.23 0.00 46.57 2.71
3306 3405 5.574970 GGAATTCTTCCTATCCTCCACAT 57.425 43.478 5.23 0.00 46.57 3.21
3326 3425 7.037297 GGAATGAAATCCTATTCCTATGGAGGA 60.037 40.741 8.37 0.00 45.66 3.71
3327 3426 7.115414 GGAATGAAATCCTATTCCTATGGAGG 58.885 42.308 8.37 0.00 45.66 4.30
3341 3440 7.227049 TCTTTGGTTTGTAGGAATGAAATCC 57.773 36.000 0.00 0.00 39.96 3.01
3342 3441 6.808704 GCTCTTTGGTTTGTAGGAATGAAATC 59.191 38.462 0.00 0.00 0.00 2.17
3343 3442 6.494835 AGCTCTTTGGTTTGTAGGAATGAAAT 59.505 34.615 0.00 0.00 0.00 2.17
3344 3443 5.833131 AGCTCTTTGGTTTGTAGGAATGAAA 59.167 36.000 0.00 0.00 0.00 2.69
3345 3444 5.385198 AGCTCTTTGGTTTGTAGGAATGAA 58.615 37.500 0.00 0.00 0.00 2.57
3346 3445 4.985538 AGCTCTTTGGTTTGTAGGAATGA 58.014 39.130 0.00 0.00 0.00 2.57
3347 3446 5.006386 AGAGCTCTTTGGTTTGTAGGAATG 58.994 41.667 11.45 0.00 0.00 2.67
3348 3447 5.006386 CAGAGCTCTTTGGTTTGTAGGAAT 58.994 41.667 15.27 0.00 0.00 3.01
3349 3448 4.102524 TCAGAGCTCTTTGGTTTGTAGGAA 59.897 41.667 15.27 0.00 31.30 3.36
3350 3449 3.646162 TCAGAGCTCTTTGGTTTGTAGGA 59.354 43.478 15.27 0.20 31.30 2.94
3351 3450 4.008074 TCAGAGCTCTTTGGTTTGTAGG 57.992 45.455 15.27 0.00 31.30 3.18
3352 3451 4.453819 CCTTCAGAGCTCTTTGGTTTGTAG 59.546 45.833 15.27 5.08 31.30 2.74
3353 3452 4.102524 TCCTTCAGAGCTCTTTGGTTTGTA 59.897 41.667 15.27 0.00 31.30 2.41
3354 3453 3.117888 TCCTTCAGAGCTCTTTGGTTTGT 60.118 43.478 15.27 0.00 31.30 2.83
3355 3454 3.480470 TCCTTCAGAGCTCTTTGGTTTG 58.520 45.455 15.27 1.50 0.00 2.93
3356 3455 3.864789 TCCTTCAGAGCTCTTTGGTTT 57.135 42.857 15.27 0.00 0.00 3.27
3357 3456 3.864789 TTCCTTCAGAGCTCTTTGGTT 57.135 42.857 15.27 0.00 0.00 3.67
3358 3457 4.379302 AATTCCTTCAGAGCTCTTTGGT 57.621 40.909 15.27 0.00 0.00 3.67
3359 3458 5.718724 AAAATTCCTTCAGAGCTCTTTGG 57.281 39.130 15.27 15.93 0.00 3.28
3360 3459 6.155136 GGAAAAATTCCTTCAGAGCTCTTTG 58.845 40.000 15.27 4.87 46.57 2.77
3361 3460 6.338214 GGAAAAATTCCTTCAGAGCTCTTT 57.662 37.500 15.27 1.02 46.57 2.52
3362 3461 5.973899 GGAAAAATTCCTTCAGAGCTCTT 57.026 39.130 15.27 0.00 46.57 2.85
3397 3496 9.942526 AGGAATTTTGTAGGATTTTCATAGGAT 57.057 29.630 0.00 0.00 0.00 3.24
3398 3497 9.408648 GAGGAATTTTGTAGGATTTTCATAGGA 57.591 33.333 0.00 0.00 0.00 2.94
3399 3498 8.633561 GGAGGAATTTTGTAGGATTTTCATAGG 58.366 37.037 0.00 0.00 0.00 2.57
3400 3499 9.189156 TGGAGGAATTTTGTAGGATTTTCATAG 57.811 33.333 0.00 0.00 0.00 2.23
3401 3500 9.540538 TTGGAGGAATTTTGTAGGATTTTCATA 57.459 29.630 0.00 0.00 0.00 2.15
3402 3501 8.434589 TTGGAGGAATTTTGTAGGATTTTCAT 57.565 30.769 0.00 0.00 0.00 2.57
3403 3502 7.847711 TTGGAGGAATTTTGTAGGATTTTCA 57.152 32.000 0.00 0.00 0.00 2.69
3404 3503 7.602644 GGTTTGGAGGAATTTTGTAGGATTTTC 59.397 37.037 0.00 0.00 0.00 2.29
3405 3504 7.071824 TGGTTTGGAGGAATTTTGTAGGATTTT 59.928 33.333 0.00 0.00 0.00 1.82
3406 3505 6.556874 TGGTTTGGAGGAATTTTGTAGGATTT 59.443 34.615 0.00 0.00 0.00 2.17
3407 3506 6.081356 TGGTTTGGAGGAATTTTGTAGGATT 58.919 36.000 0.00 0.00 0.00 3.01
3408 3507 5.650283 TGGTTTGGAGGAATTTTGTAGGAT 58.350 37.500 0.00 0.00 0.00 3.24
3409 3508 5.068215 TGGTTTGGAGGAATTTTGTAGGA 57.932 39.130 0.00 0.00 0.00 2.94
3410 3509 5.799827 TTGGTTTGGAGGAATTTTGTAGG 57.200 39.130 0.00 0.00 0.00 3.18
3411 3510 6.041523 TCCTTTGGTTTGGAGGAATTTTGTAG 59.958 38.462 0.00 0.00 36.67 2.74
3412 3511 5.900123 TCCTTTGGTTTGGAGGAATTTTGTA 59.100 36.000 0.00 0.00 36.67 2.41
3413 3512 4.719273 TCCTTTGGTTTGGAGGAATTTTGT 59.281 37.500 0.00 0.00 36.67 2.83
3414 3513 5.289083 TCCTTTGGTTTGGAGGAATTTTG 57.711 39.130 0.00 0.00 36.67 2.44
3415 3514 5.551305 CTCCTTTGGTTTGGAGGAATTTT 57.449 39.130 0.00 0.00 44.44 1.82
3422 3521 2.001076 AAGCCTCCTTTGGTTTGGAG 57.999 50.000 0.00 0.00 46.91 3.86
3423 3522 2.445525 ACTAAGCCTCCTTTGGTTTGGA 59.554 45.455 0.00 0.00 34.08 3.53
3424 3523 2.876581 ACTAAGCCTCCTTTGGTTTGG 58.123 47.619 0.00 0.00 35.54 3.28
3425 3524 4.937201 AAACTAAGCCTCCTTTGGTTTG 57.063 40.909 0.00 0.00 35.98 2.93
3426 3525 5.661312 AGAAAAACTAAGCCTCCTTTGGTTT 59.339 36.000 0.00 0.00 42.66 3.27
3427 3526 5.208890 AGAAAAACTAAGCCTCCTTTGGTT 58.791 37.500 0.00 0.00 35.67 3.67
3428 3527 4.804597 AGAAAAACTAAGCCTCCTTTGGT 58.195 39.130 0.00 0.00 32.47 3.67
3429 3528 5.791336 AAGAAAAACTAAGCCTCCTTTGG 57.209 39.130 0.00 0.00 32.47 3.28
3430 3529 7.436376 CAGAAAAGAAAAACTAAGCCTCCTTTG 59.564 37.037 0.00 0.00 32.47 2.77
3431 3530 7.417911 CCAGAAAAGAAAAACTAAGCCTCCTTT 60.418 37.037 0.00 0.00 32.47 3.11
3432 3531 6.040955 CCAGAAAAGAAAAACTAAGCCTCCTT 59.959 38.462 0.00 0.00 35.05 3.36
3433 3532 5.536538 CCAGAAAAGAAAAACTAAGCCTCCT 59.463 40.000 0.00 0.00 0.00 3.69
3434 3533 5.773575 CCAGAAAAGAAAAACTAAGCCTCC 58.226 41.667 0.00 0.00 0.00 4.30
3435 3534 5.010112 AGCCAGAAAAGAAAAACTAAGCCTC 59.990 40.000 0.00 0.00 0.00 4.70
3436 3535 4.895889 AGCCAGAAAAGAAAAACTAAGCCT 59.104 37.500 0.00 0.00 0.00 4.58
3437 3536 5.201713 AGCCAGAAAAGAAAAACTAAGCC 57.798 39.130 0.00 0.00 0.00 4.35
3438 3537 6.641314 GGTAAGCCAGAAAAGAAAAACTAAGC 59.359 38.462 0.00 0.00 34.09 3.09
3439 3538 7.712797 TGGTAAGCCAGAAAAGAAAAACTAAG 58.287 34.615 0.00 0.00 40.46 2.18
3480 3579 3.660970 TGGCTTAACATGGCTCCAATA 57.339 42.857 0.00 0.00 0.00 1.90
3529 3633 5.014333 TGCTTAACTGGGATTGGTACCTTTA 59.986 40.000 14.36 0.00 0.00 1.85
3564 3695 4.697352 ACTCCTACTTCATTCATGTGTTGC 59.303 41.667 0.00 0.00 0.00 4.17
3573 3704 9.522804 CATTTCACTACTACTCCTACTTCATTC 57.477 37.037 0.00 0.00 0.00 2.67
3579 3710 6.852420 TTGCATTTCACTACTACTCCTACT 57.148 37.500 0.00 0.00 0.00 2.57
3580 3711 7.493367 AGATTGCATTTCACTACTACTCCTAC 58.507 38.462 0.00 0.00 0.00 3.18
3581 3712 7.661536 AGATTGCATTTCACTACTACTCCTA 57.338 36.000 0.00 0.00 0.00 2.94
3582 3713 6.552445 AGATTGCATTTCACTACTACTCCT 57.448 37.500 0.00 0.00 0.00 3.69
3583 3714 7.617041 AAAGATTGCATTTCACTACTACTCC 57.383 36.000 0.00 0.00 0.00 3.85
3584 3715 8.721478 TGAAAAGATTGCATTTCACTACTACTC 58.279 33.333 8.73 0.00 39.81 2.59
3610 3741 5.245531 TGTGATGGCGTCTCTTAATTCTTT 58.754 37.500 8.40 0.00 0.00 2.52
3611 3742 4.832248 TGTGATGGCGTCTCTTAATTCTT 58.168 39.130 8.40 0.00 0.00 2.52
3641 3805 7.355332 TGCCTTTGAAAGAAACGTATAGTAC 57.645 36.000 6.49 0.00 0.00 2.73
3645 3809 7.441890 TTCATGCCTTTGAAAGAAACGTATA 57.558 32.000 6.49 0.00 32.82 1.47
3646 3810 5.957842 TCATGCCTTTGAAAGAAACGTAT 57.042 34.783 6.49 0.00 0.00 3.06
3647 3811 5.759506 TTCATGCCTTTGAAAGAAACGTA 57.240 34.783 6.49 0.00 32.82 3.57
3657 3821 6.653526 TCTTGATTCTTTTCATGCCTTTGA 57.346 33.333 0.00 0.00 0.00 2.69
3705 3872 1.856265 GCACCTTACTTGCAGCGCTT 61.856 55.000 7.50 0.00 39.93 4.68
3706 3873 2.328099 GCACCTTACTTGCAGCGCT 61.328 57.895 2.64 2.64 39.93 5.92
3707 3874 2.176792 GCACCTTACTTGCAGCGC 59.823 61.111 0.00 0.00 39.93 5.92
3709 3876 1.912371 GACCGCACCTTACTTGCAGC 61.912 60.000 0.00 0.00 40.20 5.25
3719 3886 3.771160 GTCCCATCGACCGCACCT 61.771 66.667 0.00 0.00 35.23 4.00
3772 3944 3.089874 CCTCATGAGCCGGGGGAA 61.090 66.667 17.76 0.00 0.00 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.