Multiple sequence alignment - TraesCS1A01G101400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G101400 chr1A 100.000 5251 0 0 1 5251 97925345 97920095 0.000000e+00 9697
1 TraesCS1A01G101400 chr1A 94.912 570 23 5 1 566 483903060 483903627 0.000000e+00 887
2 TraesCS1A01G101400 chr1A 94.386 570 23 5 1 566 258076872 258077436 0.000000e+00 867
3 TraesCS1A01G101400 chr3D 95.096 2814 105 21 2458 5251 64791027 64793827 0.000000e+00 4401
4 TraesCS1A01G101400 chr3D 94.638 2816 116 19 2458 5251 613560133 613557331 0.000000e+00 4331
5 TraesCS1A01G101400 chr3D 94.354 2816 123 25 2458 5251 570579623 570582424 0.000000e+00 4287
6 TraesCS1A01G101400 chr3D 95.000 1900 90 3 567 2465 613561959 613560064 0.000000e+00 2977
7 TraesCS1A01G101400 chr3D 95.165 1820 78 4 648 2465 64789286 64791097 0.000000e+00 2865
8 TraesCS1A01G101400 chr3D 94.542 568 27 4 1 566 603443859 603444424 0.000000e+00 874
9 TraesCS1A01G101400 chr3D 94.366 568 27 4 1 566 603450842 603451406 0.000000e+00 867
10 TraesCS1A01G101400 chr6D 94.670 2814 116 23 2458 5251 419868863 419866064 0.000000e+00 4335
11 TraesCS1A01G101400 chr6D 94.105 2816 114 23 2458 5251 97828945 97831730 0.000000e+00 4233
12 TraesCS1A01G101400 chr6D 95.105 1900 89 2 567 2465 97827118 97829014 0.000000e+00 2990
13 TraesCS1A01G101400 chr6B 94.260 2735 129 17 2533 5251 423036470 423039192 0.000000e+00 4156
14 TraesCS1A01G101400 chr6B 91.843 613 35 6 2458 3059 157515117 157515725 0.000000e+00 841
15 TraesCS1A01G101400 chr5B 93.733 2170 108 20 3093 5251 672898732 672900884 0.000000e+00 3229
16 TraesCS1A01G101400 chr5B 93.456 1895 119 3 573 2465 712171935 712170044 0.000000e+00 2808
17 TraesCS1A01G101400 chr5B 89.886 613 43 9 2458 3059 644389107 644388503 0.000000e+00 771
18 TraesCS1A01G101400 chr2B 93.499 2169 123 15 3093 5251 732950159 732947999 0.000000e+00 3208
19 TraesCS1A01G101400 chr2B 92.827 1896 126 6 573 2465 732952778 732950890 0.000000e+00 2739
20 TraesCS1A01G101400 chr2B 91.988 1972 121 28 2980 4938 693556468 693554521 0.000000e+00 2732
21 TraesCS1A01G101400 chr2B 87.712 1416 119 38 2970 4362 600059984 600061367 0.000000e+00 1600
22 TraesCS1A01G101400 chr4B 93.789 1900 113 3 567 2465 553926740 553928635 0.000000e+00 2850
23 TraesCS1A01G101400 chr4B 91.953 1889 138 5 578 2465 200723224 200725099 0.000000e+00 2634
24 TraesCS1A01G101400 chr4B 93.137 612 29 5 2458 3059 553928567 553929175 0.000000e+00 885
25 TraesCS1A01G101400 chr7B 93.004 1901 128 3 567 2465 556719006 556720903 0.000000e+00 2769
26 TraesCS1A01G101400 chr7B 91.545 615 37 6 2458 3059 556720833 556721445 0.000000e+00 833
27 TraesCS1A01G101400 chr1B 92.429 1902 132 8 567 2465 664477854 664479746 0.000000e+00 2704
28 TraesCS1A01G101400 chr1B 90.821 621 34 7 2458 3059 50143552 50144168 0.000000e+00 809
29 TraesCS1A01G101400 chr5A 95.070 568 25 3 1 566 287915818 287915252 0.000000e+00 891
30 TraesCS1A01G101400 chr7A 94.912 570 24 5 1 566 600559734 600560302 0.000000e+00 887
31 TraesCS1A01G101400 chr2A 94.912 570 22 6 1 566 180163941 180164507 0.000000e+00 885
32 TraesCS1A01G101400 chr3A 94.728 569 25 4 1 566 374135474 374134908 0.000000e+00 880
33 TraesCS1A01G101400 chr6A 94.396 571 23 5 1 566 546011292 546011858 0.000000e+00 869
34 TraesCS1A01G101400 chr3B 93.348 451 29 1 2609 3059 797916666 797916217 0.000000e+00 665
35 TraesCS1A01G101400 chr7D 90.769 260 11 4 2458 2705 568851881 568851623 8.430000e-88 335


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G101400 chr1A 97920095 97925345 5250 True 9697.0 9697 100.0000 1 5251 1 chr1A.!!$R1 5250
1 TraesCS1A01G101400 chr1A 483903060 483903627 567 False 887.0 887 94.9120 1 566 1 chr1A.!!$F2 565
2 TraesCS1A01G101400 chr1A 258076872 258077436 564 False 867.0 867 94.3860 1 566 1 chr1A.!!$F1 565
3 TraesCS1A01G101400 chr3D 570579623 570582424 2801 False 4287.0 4287 94.3540 2458 5251 1 chr3D.!!$F1 2793
4 TraesCS1A01G101400 chr3D 613557331 613561959 4628 True 3654.0 4331 94.8190 567 5251 2 chr3D.!!$R1 4684
5 TraesCS1A01G101400 chr3D 64789286 64793827 4541 False 3633.0 4401 95.1305 648 5251 2 chr3D.!!$F4 4603
6 TraesCS1A01G101400 chr3D 603443859 603444424 565 False 874.0 874 94.5420 1 566 1 chr3D.!!$F2 565
7 TraesCS1A01G101400 chr3D 603450842 603451406 564 False 867.0 867 94.3660 1 566 1 chr3D.!!$F3 565
8 TraesCS1A01G101400 chr6D 419866064 419868863 2799 True 4335.0 4335 94.6700 2458 5251 1 chr6D.!!$R1 2793
9 TraesCS1A01G101400 chr6D 97827118 97831730 4612 False 3611.5 4233 94.6050 567 5251 2 chr6D.!!$F1 4684
10 TraesCS1A01G101400 chr6B 423036470 423039192 2722 False 4156.0 4156 94.2600 2533 5251 1 chr6B.!!$F2 2718
11 TraesCS1A01G101400 chr6B 157515117 157515725 608 False 841.0 841 91.8430 2458 3059 1 chr6B.!!$F1 601
12 TraesCS1A01G101400 chr5B 672898732 672900884 2152 False 3229.0 3229 93.7330 3093 5251 1 chr5B.!!$F1 2158
13 TraesCS1A01G101400 chr5B 712170044 712171935 1891 True 2808.0 2808 93.4560 573 2465 1 chr5B.!!$R2 1892
14 TraesCS1A01G101400 chr5B 644388503 644389107 604 True 771.0 771 89.8860 2458 3059 1 chr5B.!!$R1 601
15 TraesCS1A01G101400 chr2B 732947999 732952778 4779 True 2973.5 3208 93.1630 573 5251 2 chr2B.!!$R2 4678
16 TraesCS1A01G101400 chr2B 693554521 693556468 1947 True 2732.0 2732 91.9880 2980 4938 1 chr2B.!!$R1 1958
17 TraesCS1A01G101400 chr2B 600059984 600061367 1383 False 1600.0 1600 87.7120 2970 4362 1 chr2B.!!$F1 1392
18 TraesCS1A01G101400 chr4B 200723224 200725099 1875 False 2634.0 2634 91.9530 578 2465 1 chr4B.!!$F1 1887
19 TraesCS1A01G101400 chr4B 553926740 553929175 2435 False 1867.5 2850 93.4630 567 3059 2 chr4B.!!$F2 2492
20 TraesCS1A01G101400 chr7B 556719006 556721445 2439 False 1801.0 2769 92.2745 567 3059 2 chr7B.!!$F1 2492
21 TraesCS1A01G101400 chr1B 664477854 664479746 1892 False 2704.0 2704 92.4290 567 2465 1 chr1B.!!$F2 1898
22 TraesCS1A01G101400 chr1B 50143552 50144168 616 False 809.0 809 90.8210 2458 3059 1 chr1B.!!$F1 601
23 TraesCS1A01G101400 chr5A 287915252 287915818 566 True 891.0 891 95.0700 1 566 1 chr5A.!!$R1 565
24 TraesCS1A01G101400 chr7A 600559734 600560302 568 False 887.0 887 94.9120 1 566 1 chr7A.!!$F1 565
25 TraesCS1A01G101400 chr2A 180163941 180164507 566 False 885.0 885 94.9120 1 566 1 chr2A.!!$F1 565
26 TraesCS1A01G101400 chr3A 374134908 374135474 566 True 880.0 880 94.7280 1 566 1 chr3A.!!$R1 565
27 TraesCS1A01G101400 chr6A 546011292 546011858 566 False 869.0 869 94.3960 1 566 1 chr6A.!!$F1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 216 0.252467 CCCAACACCTCTCCTCCTCT 60.252 60.0 0.0 0.0 0.00 3.69 F
1657 1681 0.099082 GTCGTCTCCAAGAGCTACCG 59.901 60.0 0.0 0.0 0.00 4.02 F
2395 2420 0.182537 ACCCACTTAGTTGCACAGCA 59.817 50.0 0.0 0.0 36.47 4.41 F
2836 2874 0.039437 AGTCGGTTGTCTACACGCTG 60.039 55.0 0.0 0.0 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 1808 0.249955 TGCATCATTCGCTGACCTGA 59.750 50.0 0.00 0.0 36.48 3.86 R
2560 2588 0.032952 AGCTTTCGAACACCGTAGCA 59.967 50.0 17.03 0.0 43.76 3.49 R
3631 4814 0.465097 CATGGCTCAAGCACTAGGGG 60.465 60.0 4.13 0.0 44.36 4.79 R
4500 5692 0.666274 TAAGCAGTGCGAACAGACCG 60.666 55.0 10.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 183 2.672996 GCACCACATCCAAGGCGT 60.673 61.111 0.00 0.00 0.00 5.68
204 216 0.252467 CCCAACACCTCTCCTCCTCT 60.252 60.000 0.00 0.00 0.00 3.69
262 274 1.377072 CATCACCACCATGCCGTCA 60.377 57.895 0.00 0.00 0.00 4.35
269 281 4.246206 CCATGCCGTCATGCTGCG 62.246 66.667 0.00 0.00 46.69 5.18
328 340 3.371097 GATCAAGGCGCGGGAGACA 62.371 63.158 8.83 0.00 0.00 3.41
571 584 2.436417 CAACGATCCCCAACACAAGAT 58.564 47.619 0.00 0.00 0.00 2.40
584 597 4.320546 ACACAAGATGGATCCAATGGAA 57.679 40.909 20.67 0.00 34.34 3.53
608 623 5.128335 AGCAGTGACAGTTCAGATGATGATA 59.872 40.000 0.00 0.00 37.89 2.15
676 691 4.666253 GCCAACCCTGCCAGCAGA 62.666 66.667 21.01 0.00 46.30 4.26
695 710 0.886563 AAGCAACTCAATGAGCAGCC 59.113 50.000 19.36 3.93 34.69 4.85
726 741 8.077991 CACACTACAGATGTTGATTGACAAAAT 58.922 33.333 1.43 0.00 38.94 1.82
837 860 2.341176 GCCAGCTTTGCCAACCAG 59.659 61.111 0.00 0.00 0.00 4.00
865 888 2.464459 GCCAGATTTCCACGAGCGG 61.464 63.158 0.00 0.00 0.00 5.52
884 907 3.659786 CGGGAGTTGTGTGACAAGATTA 58.340 45.455 0.00 0.00 39.00 1.75
904 927 7.725251 AGATTAATTTTGCTGTTGACCAGAAA 58.275 30.769 0.00 0.00 44.49 2.52
947 970 5.278660 GCTGAAAAGAATCCAGTTGACATGT 60.279 40.000 0.00 0.00 0.00 3.21
948 971 6.713762 TGAAAAGAATCCAGTTGACATGTT 57.286 33.333 0.00 0.00 0.00 2.71
973 996 1.004745 GCAGGGAAGGGTCTTGATTGA 59.995 52.381 0.00 0.00 0.00 2.57
1075 1098 1.247567 CAAACCCTCATGTGGTCCAC 58.752 55.000 15.64 15.64 34.15 4.02
1197 1220 3.271142 CGCAAACTGTTGTGCCAAT 57.729 47.368 16.42 0.00 38.35 3.16
1268 1291 3.146066 GTTGAGCCTACAACCATCACAA 58.854 45.455 0.00 0.00 42.68 3.33
1272 1295 1.740025 GCCTACAACCATCACAAGAGC 59.260 52.381 0.00 0.00 0.00 4.09
1329 1352 1.369625 CCACCTAAACCAGCTAAGCG 58.630 55.000 0.00 0.00 0.00 4.68
1330 1353 0.727398 CACCTAAACCAGCTAAGCGC 59.273 55.000 0.00 0.00 39.57 5.92
1331 1354 0.392595 ACCTAAACCAGCTAAGCGCC 60.393 55.000 2.29 0.00 40.39 6.53
1332 1355 1.095807 CCTAAACCAGCTAAGCGCCC 61.096 60.000 2.29 0.00 40.39 6.13
1624 1648 2.021457 CAAACACGGAAGGAGGTTGTT 58.979 47.619 0.00 0.00 34.56 2.83
1637 1661 4.755123 AGGAGGTTGTTAATCTGTCAAACG 59.245 41.667 0.00 0.00 34.47 3.60
1639 1663 4.457466 AGGTTGTTAATCTGTCAAACGGT 58.543 39.130 0.00 0.00 34.47 4.83
1657 1681 0.099082 GTCGTCTCCAAGAGCTACCG 59.901 60.000 0.00 0.00 0.00 4.02
1666 1690 0.539051 AAGAGCTACCGCAGAGCATT 59.461 50.000 4.51 0.00 42.69 3.56
1701 1725 4.730657 CATCACCAAGAGCTGATTTTCAC 58.269 43.478 0.00 0.00 0.00 3.18
1707 1731 4.037208 CCAAGAGCTGATTTTCACAACAGT 59.963 41.667 0.00 0.00 33.57 3.55
1716 1740 7.253750 GCTGATTTTCACAACAGTTTAACACAG 60.254 37.037 0.00 0.00 33.57 3.66
1745 1769 4.202111 GGTGTTCAACATTGTAAGCAGGTT 60.202 41.667 0.00 0.00 0.00 3.50
1784 1808 5.339990 GCCAAATACAACATTACTGCGAAT 58.660 37.500 0.00 0.00 0.00 3.34
1895 1920 0.464036 GGTGATGGGTACTGCGATGA 59.536 55.000 0.00 0.00 0.00 2.92
1902 1927 1.609580 GGGTACTGCGATGAACCAACA 60.610 52.381 0.00 0.00 33.46 3.33
2147 2172 1.000283 CACGAGCAGTTCTTCAGGACT 60.000 52.381 0.00 0.00 0.00 3.85
2214 2239 5.248640 TCTCAAAGGTCTCCATTCATTGAC 58.751 41.667 0.00 0.00 0.00 3.18
2226 2251 8.859090 TCTCCATTCATTGACTACAACAAAAAT 58.141 29.630 0.00 0.00 38.90 1.82
2295 2320 6.240894 CACTATGTATTGGGTCAGGCATATT 58.759 40.000 0.00 0.00 0.00 1.28
2303 2328 1.771255 GGTCAGGCATATTCCAGGAGT 59.229 52.381 0.00 0.00 0.00 3.85
2354 2379 5.670361 ACTCCCCACAACCTATGTACATATT 59.330 40.000 15.81 6.01 41.46 1.28
2395 2420 0.182537 ACCCACTTAGTTGCACAGCA 59.817 50.000 0.00 0.00 36.47 4.41
2396 2421 1.317613 CCCACTTAGTTGCACAGCAA 58.682 50.000 0.00 0.00 46.80 3.91
2403 2428 3.036577 TTGCACAGCAAGCAGAGC 58.963 55.556 0.00 0.32 43.99 4.09
2404 2429 1.824760 TTGCACAGCAAGCAGAGCA 60.825 52.632 5.56 5.56 43.99 4.26
2405 2430 1.176619 TTGCACAGCAAGCAGAGCAT 61.177 50.000 9.93 0.00 43.99 3.79
2406 2431 1.154016 GCACAGCAAGCAGAGCATG 60.154 57.895 2.36 0.00 0.00 4.06
2407 2432 1.863662 GCACAGCAAGCAGAGCATGT 61.864 55.000 2.36 0.00 29.47 3.21
2408 2433 0.596577 CACAGCAAGCAGAGCATGTT 59.403 50.000 0.00 0.00 29.47 2.71
2409 2434 0.596577 ACAGCAAGCAGAGCATGTTG 59.403 50.000 9.01 9.01 42.34 3.33
2410 2435 0.732880 CAGCAAGCAGAGCATGTTGC 60.733 55.000 8.07 8.07 45.46 4.17
2422 2447 3.141002 GCATGTTGCACAGAATAGTGG 57.859 47.619 0.00 0.00 44.26 4.00
2423 2448 2.489329 GCATGTTGCACAGAATAGTGGT 59.511 45.455 0.00 0.00 44.26 4.16
2424 2449 3.057315 GCATGTTGCACAGAATAGTGGTT 60.057 43.478 0.00 0.00 44.26 3.67
2425 2450 4.559300 GCATGTTGCACAGAATAGTGGTTT 60.559 41.667 0.00 0.00 44.26 3.27
2426 2451 4.566545 TGTTGCACAGAATAGTGGTTTG 57.433 40.909 0.00 0.00 39.87 2.93
2427 2452 4.203226 TGTTGCACAGAATAGTGGTTTGA 58.797 39.130 0.00 0.00 39.87 2.69
2428 2453 4.642437 TGTTGCACAGAATAGTGGTTTGAA 59.358 37.500 0.00 0.00 39.87 2.69
2429 2454 5.301551 TGTTGCACAGAATAGTGGTTTGAAT 59.698 36.000 0.00 0.00 39.87 2.57
2430 2455 6.183360 TGTTGCACAGAATAGTGGTTTGAATT 60.183 34.615 0.00 0.00 39.87 2.17
2431 2456 5.771469 TGCACAGAATAGTGGTTTGAATTG 58.229 37.500 0.00 0.00 39.87 2.32
2432 2457 4.622740 GCACAGAATAGTGGTTTGAATTGC 59.377 41.667 0.00 0.00 39.87 3.56
2433 2458 5.771469 CACAGAATAGTGGTTTGAATTGCA 58.229 37.500 0.00 0.00 35.88 4.08
2434 2459 5.630680 CACAGAATAGTGGTTTGAATTGCAC 59.369 40.000 0.00 0.00 35.88 4.57
2435 2460 5.301551 ACAGAATAGTGGTTTGAATTGCACA 59.698 36.000 0.00 0.00 0.00 4.57
2436 2461 5.630680 CAGAATAGTGGTTTGAATTGCACAC 59.369 40.000 0.00 0.00 0.00 3.82
2437 2462 5.536161 AGAATAGTGGTTTGAATTGCACACT 59.464 36.000 7.39 7.39 41.52 3.55
2438 2463 5.789643 ATAGTGGTTTGAATTGCACACTT 57.210 34.783 7.53 0.00 39.59 3.16
2439 2464 4.470334 AGTGGTTTGAATTGCACACTTT 57.530 36.364 0.00 0.00 35.85 2.66
2440 2465 4.831107 AGTGGTTTGAATTGCACACTTTT 58.169 34.783 0.00 0.00 35.85 2.27
2441 2466 5.244755 AGTGGTTTGAATTGCACACTTTTT 58.755 33.333 0.00 0.00 35.85 1.94
2442 2467 5.122082 AGTGGTTTGAATTGCACACTTTTTG 59.878 36.000 0.00 0.00 35.85 2.44
2443 2468 4.999950 TGGTTTGAATTGCACACTTTTTGT 59.000 33.333 0.00 0.00 39.97 2.83
2444 2469 5.471456 TGGTTTGAATTGCACACTTTTTGTT 59.529 32.000 0.00 0.00 35.67 2.83
2445 2470 6.016777 TGGTTTGAATTGCACACTTTTTGTTT 60.017 30.769 0.00 0.00 35.67 2.83
2446 2471 6.860539 GGTTTGAATTGCACACTTTTTGTTTT 59.139 30.769 0.00 0.00 35.67 2.43
2447 2472 7.380870 GGTTTGAATTGCACACTTTTTGTTTTT 59.619 29.630 0.00 0.00 35.67 1.94
2560 2588 1.248101 GGGCACGGGCACTTGTATTT 61.248 55.000 13.89 0.00 41.45 1.40
2590 2618 2.082140 TCGAAAGCTAGCAGGGGATA 57.918 50.000 18.83 0.00 0.00 2.59
2638 2676 2.037902 TGGAGAGCGGTTGTTCATTGTA 59.962 45.455 0.00 0.00 0.00 2.41
2691 2729 7.414984 GGTTTGAGATCTGTTCATGATTTCTCC 60.415 40.741 0.00 0.00 0.00 3.71
2692 2730 6.556974 TGAGATCTGTTCATGATTTCTCCT 57.443 37.500 0.00 0.00 0.00 3.69
2693 2731 7.666063 TGAGATCTGTTCATGATTTCTCCTA 57.334 36.000 0.00 0.00 0.00 2.94
2694 2732 7.724287 TGAGATCTGTTCATGATTTCTCCTAG 58.276 38.462 0.00 0.00 0.00 3.02
2695 2733 7.344093 TGAGATCTGTTCATGATTTCTCCTAGT 59.656 37.037 0.00 0.00 0.00 2.57
2696 2734 8.088463 AGATCTGTTCATGATTTCTCCTAGTT 57.912 34.615 0.00 0.00 0.00 2.24
2697 2735 8.203485 AGATCTGTTCATGATTTCTCCTAGTTC 58.797 37.037 0.00 0.00 0.00 3.01
2698 2736 7.487822 TCTGTTCATGATTTCTCCTAGTTCT 57.512 36.000 0.00 0.00 0.00 3.01
2699 2737 7.911651 TCTGTTCATGATTTCTCCTAGTTCTT 58.088 34.615 0.00 0.00 0.00 2.52
2700 2738 8.037758 TCTGTTCATGATTTCTCCTAGTTCTTC 58.962 37.037 0.00 0.00 0.00 2.87
2701 2739 7.911651 TGTTCATGATTTCTCCTAGTTCTTCT 58.088 34.615 0.00 0.00 0.00 2.85
2702 2740 8.378565 TGTTCATGATTTCTCCTAGTTCTTCTT 58.621 33.333 0.00 0.00 0.00 2.52
2703 2741 8.878769 GTTCATGATTTCTCCTAGTTCTTCTTC 58.121 37.037 0.00 0.00 0.00 2.87
2704 2742 8.138928 TCATGATTTCTCCTAGTTCTTCTTCA 57.861 34.615 0.00 0.00 0.00 3.02
2705 2743 8.597167 TCATGATTTCTCCTAGTTCTTCTTCAA 58.403 33.333 0.00 0.00 0.00 2.69
2706 2744 9.224267 CATGATTTCTCCTAGTTCTTCTTCAAA 57.776 33.333 0.00 0.00 0.00 2.69
2707 2745 9.799106 ATGATTTCTCCTAGTTCTTCTTCAAAA 57.201 29.630 0.00 0.00 0.00 2.44
2708 2746 9.799106 TGATTTCTCCTAGTTCTTCTTCAAAAT 57.201 29.630 0.00 0.00 0.00 1.82
2714 2752 9.883142 CTCCTAGTTCTTCTTCAAAATCTATGT 57.117 33.333 0.00 0.00 0.00 2.29
2715 2753 9.877178 TCCTAGTTCTTCTTCAAAATCTATGTC 57.123 33.333 0.00 0.00 0.00 3.06
2716 2754 8.812329 CCTAGTTCTTCTTCAAAATCTATGTCG 58.188 37.037 0.00 0.00 0.00 4.35
2717 2755 9.574458 CTAGTTCTTCTTCAAAATCTATGTCGA 57.426 33.333 0.00 0.00 0.00 4.20
2718 2756 8.472683 AGTTCTTCTTCAAAATCTATGTCGAG 57.527 34.615 0.00 0.00 0.00 4.04
2719 2757 8.091449 AGTTCTTCTTCAAAATCTATGTCGAGT 58.909 33.333 0.00 0.00 0.00 4.18
2720 2758 8.713271 GTTCTTCTTCAAAATCTATGTCGAGTT 58.287 33.333 0.00 0.00 0.00 3.01
2721 2759 8.467402 TCTTCTTCAAAATCTATGTCGAGTTC 57.533 34.615 0.00 0.00 0.00 3.01
2722 2760 8.088365 TCTTCTTCAAAATCTATGTCGAGTTCA 58.912 33.333 0.00 0.00 0.00 3.18
2723 2761 8.601845 TTCTTCAAAATCTATGTCGAGTTCAA 57.398 30.769 0.00 0.00 0.00 2.69
2724 2762 8.244494 TCTTCAAAATCTATGTCGAGTTCAAG 57.756 34.615 0.00 0.00 0.00 3.02
2725 2763 7.872993 TCTTCAAAATCTATGTCGAGTTCAAGT 59.127 33.333 0.00 0.00 0.00 3.16
2726 2764 7.962964 TCAAAATCTATGTCGAGTTCAAGTT 57.037 32.000 0.00 0.00 0.00 2.66
2727 2765 8.018677 TCAAAATCTATGTCGAGTTCAAGTTC 57.981 34.615 0.00 0.00 0.00 3.01
2728 2766 7.872993 TCAAAATCTATGTCGAGTTCAAGTTCT 59.127 33.333 0.00 0.00 0.00 3.01
2729 2767 9.140286 CAAAATCTATGTCGAGTTCAAGTTCTA 57.860 33.333 0.00 0.00 0.00 2.10
2730 2768 9.877178 AAAATCTATGTCGAGTTCAAGTTCTAT 57.123 29.630 0.00 0.00 0.00 1.98
2731 2769 8.864069 AATCTATGTCGAGTTCAAGTTCTATG 57.136 34.615 0.00 0.00 0.00 2.23
2732 2770 7.392494 TCTATGTCGAGTTCAAGTTCTATGT 57.608 36.000 0.00 0.00 0.00 2.29
2733 2771 7.827701 TCTATGTCGAGTTCAAGTTCTATGTT 58.172 34.615 0.00 0.00 0.00 2.71
2734 2772 6.712241 ATGTCGAGTTCAAGTTCTATGTTG 57.288 37.500 0.00 0.00 0.00 3.33
2735 2773 5.597806 TGTCGAGTTCAAGTTCTATGTTGT 58.402 37.500 0.00 0.00 0.00 3.32
2736 2774 6.046593 TGTCGAGTTCAAGTTCTATGTTGTT 58.953 36.000 0.00 0.00 0.00 2.83
2737 2775 6.200286 TGTCGAGTTCAAGTTCTATGTTGTTC 59.800 38.462 0.00 0.00 0.00 3.18
2738 2776 6.421202 GTCGAGTTCAAGTTCTATGTTGTTCT 59.579 38.462 0.00 0.00 0.00 3.01
2739 2777 6.984474 TCGAGTTCAAGTTCTATGTTGTTCTT 59.016 34.615 0.00 0.00 0.00 2.52
2740 2778 7.169308 TCGAGTTCAAGTTCTATGTTGTTCTTC 59.831 37.037 0.00 0.00 0.00 2.87
2741 2779 7.497925 AGTTCAAGTTCTATGTTGTTCTTCC 57.502 36.000 0.00 0.00 0.00 3.46
2742 2780 7.283329 AGTTCAAGTTCTATGTTGTTCTTCCT 58.717 34.615 0.00 0.00 0.00 3.36
2743 2781 8.429641 AGTTCAAGTTCTATGTTGTTCTTCCTA 58.570 33.333 0.00 0.00 0.00 2.94
2744 2782 8.713271 GTTCAAGTTCTATGTTGTTCTTCCTAG 58.287 37.037 0.00 0.00 0.00 3.02
2745 2783 7.963532 TCAAGTTCTATGTTGTTCTTCCTAGT 58.036 34.615 0.00 0.00 0.00 2.57
2746 2784 8.429641 TCAAGTTCTATGTTGTTCTTCCTAGTT 58.570 33.333 0.00 0.00 0.00 2.24
2747 2785 8.499162 CAAGTTCTATGTTGTTCTTCCTAGTTG 58.501 37.037 0.00 0.00 0.00 3.16
2748 2786 7.162082 AGTTCTATGTTGTTCTTCCTAGTTGG 58.838 38.462 0.00 0.00 37.10 3.77
2749 2787 5.488341 TCTATGTTGTTCTTCCTAGTTGGC 58.512 41.667 0.00 0.00 35.26 4.52
2750 2788 3.857157 TGTTGTTCTTCCTAGTTGGCT 57.143 42.857 0.00 0.00 35.26 4.75
2751 2789 3.476552 TGTTGTTCTTCCTAGTTGGCTG 58.523 45.455 0.00 0.00 35.26 4.85
2752 2790 2.185004 TGTTCTTCCTAGTTGGCTGC 57.815 50.000 0.00 0.00 35.26 5.25
2753 2791 1.419762 TGTTCTTCCTAGTTGGCTGCA 59.580 47.619 0.50 0.00 35.26 4.41
2754 2792 2.158682 TGTTCTTCCTAGTTGGCTGCAA 60.159 45.455 0.50 0.00 35.26 4.08
2755 2793 2.185004 TCTTCCTAGTTGGCTGCAAC 57.815 50.000 0.50 4.48 35.26 4.17
2756 2794 1.168714 CTTCCTAGTTGGCTGCAACC 58.831 55.000 0.00 0.00 35.79 3.77
2757 2795 0.476338 TTCCTAGTTGGCTGCAACCA 59.524 50.000 4.25 4.25 38.16 3.67
2758 2796 0.250727 TCCTAGTTGGCTGCAACCAC 60.251 55.000 8.74 4.53 40.19 4.16
2759 2797 0.537143 CCTAGTTGGCTGCAACCACA 60.537 55.000 8.74 0.00 40.19 4.17
2760 2798 1.538047 CTAGTTGGCTGCAACCACAT 58.462 50.000 8.74 2.81 40.19 3.21
2761 2799 2.617788 CCTAGTTGGCTGCAACCACATA 60.618 50.000 8.74 3.92 40.19 2.29
2762 2800 2.220653 AGTTGGCTGCAACCACATAT 57.779 45.000 8.74 0.00 40.19 1.78
2763 2801 2.528564 AGTTGGCTGCAACCACATATT 58.471 42.857 8.74 0.00 40.19 1.28
2764 2802 3.696045 AGTTGGCTGCAACCACATATTA 58.304 40.909 8.74 0.00 40.19 0.98
2765 2803 3.696051 AGTTGGCTGCAACCACATATTAG 59.304 43.478 8.74 0.00 40.19 1.73
2766 2804 2.653726 TGGCTGCAACCACATATTAGG 58.346 47.619 4.25 0.00 33.75 2.69
2767 2805 2.025416 TGGCTGCAACCACATATTAGGT 60.025 45.455 4.25 0.00 40.61 3.08
2768 2806 2.358898 GGCTGCAACCACATATTAGGTG 59.641 50.000 0.00 1.51 38.37 4.00
2780 2818 7.439157 CACATATTAGGTGGTTGTCCATATG 57.561 40.000 0.53 0.00 46.20 1.78
2781 2819 6.003950 ACATATTAGGTGGTTGTCCATATGC 58.996 40.000 0.00 0.00 46.20 3.14
2782 2820 4.796110 ATTAGGTGGTTGTCCATATGCT 57.204 40.909 0.00 0.00 46.20 3.79
2783 2821 2.717639 AGGTGGTTGTCCATATGCTC 57.282 50.000 0.00 0.00 46.20 4.26
2784 2822 2.200081 AGGTGGTTGTCCATATGCTCT 58.800 47.619 0.00 0.00 46.20 4.09
2785 2823 2.578021 AGGTGGTTGTCCATATGCTCTT 59.422 45.455 0.00 0.00 46.20 2.85
2786 2824 2.945668 GGTGGTTGTCCATATGCTCTTC 59.054 50.000 0.00 0.00 46.20 2.87
2787 2825 3.370953 GGTGGTTGTCCATATGCTCTTCT 60.371 47.826 0.00 0.00 46.20 2.85
2788 2826 3.624861 GTGGTTGTCCATATGCTCTTCTG 59.375 47.826 0.00 0.00 46.20 3.02
2789 2827 3.264193 TGGTTGTCCATATGCTCTTCTGT 59.736 43.478 0.00 0.00 39.03 3.41
2790 2828 4.263462 TGGTTGTCCATATGCTCTTCTGTT 60.263 41.667 0.00 0.00 39.03 3.16
2791 2829 4.095483 GGTTGTCCATATGCTCTTCTGTTG 59.905 45.833 0.00 0.00 0.00 3.33
2792 2830 3.273434 TGTCCATATGCTCTTCTGTTGC 58.727 45.455 0.00 0.00 0.00 4.17
2793 2831 3.273434 GTCCATATGCTCTTCTGTTGCA 58.727 45.455 0.00 0.00 41.13 4.08
2794 2832 3.064545 GTCCATATGCTCTTCTGTTGCAC 59.935 47.826 0.00 0.00 39.63 4.57
2795 2833 3.054875 TCCATATGCTCTTCTGTTGCACT 60.055 43.478 0.00 0.00 39.63 4.40
2796 2834 4.162131 TCCATATGCTCTTCTGTTGCACTA 59.838 41.667 0.00 0.00 39.63 2.74
2797 2835 4.510711 CCATATGCTCTTCTGTTGCACTAG 59.489 45.833 0.00 0.00 39.63 2.57
2798 2836 3.692257 ATGCTCTTCTGTTGCACTAGT 57.308 42.857 0.00 0.00 39.63 2.57
2799 2837 3.475566 TGCTCTTCTGTTGCACTAGTT 57.524 42.857 0.00 0.00 0.00 2.24
2800 2838 3.133691 TGCTCTTCTGTTGCACTAGTTG 58.866 45.455 0.00 0.00 0.00 3.16
2801 2839 3.134458 GCTCTTCTGTTGCACTAGTTGT 58.866 45.455 0.00 0.00 0.00 3.32
2802 2840 3.185391 GCTCTTCTGTTGCACTAGTTGTC 59.815 47.826 0.00 0.00 0.00 3.18
2803 2841 4.626042 CTCTTCTGTTGCACTAGTTGTCT 58.374 43.478 0.00 0.00 0.00 3.41
2804 2842 5.023533 TCTTCTGTTGCACTAGTTGTCTT 57.976 39.130 0.00 0.00 0.00 3.01
2805 2843 6.156748 TCTTCTGTTGCACTAGTTGTCTTA 57.843 37.500 0.00 0.00 0.00 2.10
2806 2844 5.983720 TCTTCTGTTGCACTAGTTGTCTTAC 59.016 40.000 0.00 0.00 0.00 2.34
2807 2845 5.531122 TCTGTTGCACTAGTTGTCTTACT 57.469 39.130 0.00 0.00 0.00 2.24
2808 2846 5.289595 TCTGTTGCACTAGTTGTCTTACTG 58.710 41.667 0.00 0.00 0.00 2.74
2809 2847 5.018539 TGTTGCACTAGTTGTCTTACTGT 57.981 39.130 0.00 0.00 0.00 3.55
2810 2848 5.424757 TGTTGCACTAGTTGTCTTACTGTT 58.575 37.500 0.00 0.00 0.00 3.16
2811 2849 5.878116 TGTTGCACTAGTTGTCTTACTGTTT 59.122 36.000 0.00 0.00 0.00 2.83
2812 2850 5.984233 TGCACTAGTTGTCTTACTGTTTG 57.016 39.130 0.00 0.00 0.00 2.93
2813 2851 5.424757 TGCACTAGTTGTCTTACTGTTTGT 58.575 37.500 0.00 0.00 0.00 2.83
2814 2852 6.575267 TGCACTAGTTGTCTTACTGTTTGTA 58.425 36.000 0.00 0.00 0.00 2.41
2815 2853 6.477688 TGCACTAGTTGTCTTACTGTTTGTAC 59.522 38.462 0.00 0.00 0.00 2.90
2816 2854 6.700520 GCACTAGTTGTCTTACTGTTTGTACT 59.299 38.462 0.00 0.00 0.00 2.73
2817 2855 7.864379 GCACTAGTTGTCTTACTGTTTGTACTA 59.136 37.037 0.00 0.00 0.00 1.82
2818 2856 9.395707 CACTAGTTGTCTTACTGTTTGTACTAG 57.604 37.037 0.00 0.00 31.84 2.57
2819 2857 9.129532 ACTAGTTGTCTTACTGTTTGTACTAGT 57.870 33.333 0.00 0.00 33.01 2.57
2820 2858 9.609950 CTAGTTGTCTTACTGTTTGTACTAGTC 57.390 37.037 0.00 0.00 0.00 2.59
2821 2859 7.137426 AGTTGTCTTACTGTTTGTACTAGTCG 58.863 38.462 0.00 0.00 0.00 4.18
2822 2860 6.005583 TGTCTTACTGTTTGTACTAGTCGG 57.994 41.667 0.00 0.00 0.00 4.79
2823 2861 5.532406 TGTCTTACTGTTTGTACTAGTCGGT 59.468 40.000 0.00 0.00 0.00 4.69
2824 2862 6.039717 TGTCTTACTGTTTGTACTAGTCGGTT 59.960 38.462 0.00 0.00 0.00 4.44
2825 2863 6.361748 GTCTTACTGTTTGTACTAGTCGGTTG 59.638 42.308 0.00 0.00 0.00 3.77
2826 2864 4.660789 ACTGTTTGTACTAGTCGGTTGT 57.339 40.909 0.00 0.00 0.00 3.32
2827 2865 4.614946 ACTGTTTGTACTAGTCGGTTGTC 58.385 43.478 0.00 0.00 0.00 3.18
2828 2866 4.340381 ACTGTTTGTACTAGTCGGTTGTCT 59.660 41.667 0.00 0.00 0.00 3.41
2829 2867 5.532406 ACTGTTTGTACTAGTCGGTTGTCTA 59.468 40.000 0.00 0.00 0.00 2.59
2830 2868 5.762045 TGTTTGTACTAGTCGGTTGTCTAC 58.238 41.667 0.00 0.00 0.00 2.59
2831 2869 5.299028 TGTTTGTACTAGTCGGTTGTCTACA 59.701 40.000 0.00 0.00 0.00 2.74
2832 2870 5.362556 TTGTACTAGTCGGTTGTCTACAC 57.637 43.478 0.00 0.00 0.00 2.90
2833 2871 3.433274 TGTACTAGTCGGTTGTCTACACG 59.567 47.826 0.00 0.00 0.00 4.49
2834 2872 1.198637 ACTAGTCGGTTGTCTACACGC 59.801 52.381 0.00 0.00 0.00 5.34
2835 2873 1.467734 CTAGTCGGTTGTCTACACGCT 59.532 52.381 0.00 0.00 0.00 5.07
2836 2874 0.039437 AGTCGGTTGTCTACACGCTG 60.039 55.000 0.00 0.00 0.00 5.18
2837 2875 0.318445 GTCGGTTGTCTACACGCTGT 60.318 55.000 0.00 0.00 0.00 4.40
2838 2876 0.386476 TCGGTTGTCTACACGCTGTT 59.614 50.000 0.00 0.00 0.00 3.16
2839 2877 0.782384 CGGTTGTCTACACGCTGTTC 59.218 55.000 0.00 0.00 0.00 3.18
2840 2878 1.860676 GGTTGTCTACACGCTGTTCA 58.139 50.000 0.00 0.00 0.00 3.18
2841 2879 1.792949 GGTTGTCTACACGCTGTTCAG 59.207 52.381 0.00 0.00 0.00 3.02
2842 2880 1.792949 GTTGTCTACACGCTGTTCAGG 59.207 52.381 1.97 0.00 0.00 3.86
2843 2881 1.037493 TGTCTACACGCTGTTCAGGT 58.963 50.000 1.97 0.00 0.00 4.00
2844 2882 1.269569 TGTCTACACGCTGTTCAGGTG 60.270 52.381 14.84 14.84 37.67 4.00
2845 2883 0.319555 TCTACACGCTGTTCAGGTGC 60.320 55.000 15.74 0.00 35.11 5.01
2846 2884 0.599991 CTACACGCTGTTCAGGTGCA 60.600 55.000 15.74 0.00 35.11 4.57
2847 2885 0.878523 TACACGCTGTTCAGGTGCAC 60.879 55.000 8.80 8.80 35.11 4.57
2848 2886 2.179547 CACGCTGTTCAGGTGCACA 61.180 57.895 20.43 0.00 0.00 4.57
2849 2887 1.451207 ACGCTGTTCAGGTGCACAA 60.451 52.632 20.43 0.88 0.00 3.33
2850 2888 1.280746 CGCTGTTCAGGTGCACAAG 59.719 57.895 20.43 10.39 0.00 3.16
2851 2889 1.439353 CGCTGTTCAGGTGCACAAGT 61.439 55.000 20.43 0.00 0.00 3.16
2852 2890 0.740737 GCTGTTCAGGTGCACAAGTT 59.259 50.000 20.43 0.00 0.00 2.66
2853 2891 1.134946 GCTGTTCAGGTGCACAAGTTT 59.865 47.619 20.43 0.00 0.00 2.66
2854 2892 2.417243 GCTGTTCAGGTGCACAAGTTTT 60.417 45.455 20.43 0.00 0.00 2.43
2855 2893 3.848726 CTGTTCAGGTGCACAAGTTTTT 58.151 40.909 20.43 0.00 0.00 1.94
2856 2894 3.843999 TGTTCAGGTGCACAAGTTTTTC 58.156 40.909 20.43 0.00 0.00 2.29
2857 2895 3.186909 GTTCAGGTGCACAAGTTTTTCC 58.813 45.455 20.43 0.00 0.00 3.13
2858 2896 2.733956 TCAGGTGCACAAGTTTTTCCT 58.266 42.857 20.43 0.00 0.00 3.36
2859 2897 3.892284 TCAGGTGCACAAGTTTTTCCTA 58.108 40.909 20.43 0.00 0.00 2.94
2860 2898 3.630312 TCAGGTGCACAAGTTTTTCCTAC 59.370 43.478 20.43 0.00 0.00 3.18
2861 2899 3.632145 CAGGTGCACAAGTTTTTCCTACT 59.368 43.478 20.43 0.00 0.00 2.57
2862 2900 3.632145 AGGTGCACAAGTTTTTCCTACTG 59.368 43.478 20.43 0.00 0.00 2.74
2863 2901 3.630312 GGTGCACAAGTTTTTCCTACTGA 59.370 43.478 20.43 0.00 0.00 3.41
2864 2902 4.261197 GGTGCACAAGTTTTTCCTACTGAG 60.261 45.833 20.43 0.00 0.00 3.35
2865 2903 4.335594 GTGCACAAGTTTTTCCTACTGAGT 59.664 41.667 13.17 0.00 0.00 3.41
2866 2904 4.947388 TGCACAAGTTTTTCCTACTGAGTT 59.053 37.500 0.00 0.00 0.00 3.01
2867 2905 5.163663 TGCACAAGTTTTTCCTACTGAGTTG 60.164 40.000 0.00 0.00 0.00 3.16
2868 2906 5.733373 GCACAAGTTTTTCCTACTGAGTTGG 60.733 44.000 6.75 6.75 0.00 3.77
2869 2907 4.338400 ACAAGTTTTTCCTACTGAGTTGGC 59.662 41.667 8.25 0.00 0.00 4.52
2870 2908 4.439253 AGTTTTTCCTACTGAGTTGGCT 57.561 40.909 8.25 0.00 0.00 4.75
2871 2909 4.137543 AGTTTTTCCTACTGAGTTGGCTG 58.862 43.478 8.25 0.00 0.00 4.85
2872 2910 2.185004 TTTCCTACTGAGTTGGCTGC 57.815 50.000 8.25 0.00 0.00 5.25
2873 2911 1.055849 TTCCTACTGAGTTGGCTGCA 58.944 50.000 8.25 0.00 0.00 4.41
2874 2912 1.279496 TCCTACTGAGTTGGCTGCAT 58.721 50.000 8.25 0.00 0.00 3.96
2875 2913 1.208052 TCCTACTGAGTTGGCTGCATC 59.792 52.381 8.25 0.00 0.00 3.91
2876 2914 1.065926 CCTACTGAGTTGGCTGCATCA 60.066 52.381 0.00 0.00 0.00 3.07
2877 2915 2.005451 CTACTGAGTTGGCTGCATCAC 58.995 52.381 0.50 0.00 0.00 3.06
2878 2916 0.399454 ACTGAGTTGGCTGCATCACT 59.601 50.000 0.50 0.00 0.00 3.41
2879 2917 1.625315 ACTGAGTTGGCTGCATCACTA 59.375 47.619 0.50 0.00 0.00 2.74
2880 2918 2.238144 ACTGAGTTGGCTGCATCACTAT 59.762 45.455 0.50 0.00 0.00 2.12
2881 2919 3.452264 ACTGAGTTGGCTGCATCACTATA 59.548 43.478 0.50 0.00 0.00 1.31
2882 2920 3.797039 TGAGTTGGCTGCATCACTATAC 58.203 45.455 0.50 0.00 0.00 1.47
2883 2921 3.452264 TGAGTTGGCTGCATCACTATACT 59.548 43.478 0.50 0.00 0.00 2.12
2884 2922 4.649218 TGAGTTGGCTGCATCACTATACTA 59.351 41.667 0.50 0.00 0.00 1.82
2885 2923 5.207110 AGTTGGCTGCATCACTATACTAG 57.793 43.478 0.50 0.00 0.00 2.57
2886 2924 4.651503 AGTTGGCTGCATCACTATACTAGT 59.348 41.667 0.00 0.00 40.28 2.57
2887 2925 5.129485 AGTTGGCTGCATCACTATACTAGTT 59.871 40.000 0.00 0.00 36.76 2.24
2888 2926 4.948847 TGGCTGCATCACTATACTAGTTG 58.051 43.478 0.00 0.00 36.76 3.16
2889 2927 4.202253 TGGCTGCATCACTATACTAGTTGG 60.202 45.833 0.00 0.00 36.76 3.77
2890 2928 4.202264 GGCTGCATCACTATACTAGTTGGT 60.202 45.833 0.00 0.00 36.76 3.67
2891 2929 5.360591 GCTGCATCACTATACTAGTTGGTT 58.639 41.667 0.00 0.00 36.76 3.67
2892 2930 5.235186 GCTGCATCACTATACTAGTTGGTTG 59.765 44.000 0.00 0.00 36.76 3.77
2893 2931 6.294361 TGCATCACTATACTAGTTGGTTGT 57.706 37.500 0.00 0.00 36.76 3.32
2894 2932 6.338146 TGCATCACTATACTAGTTGGTTGTC 58.662 40.000 0.00 0.00 36.76 3.18
2895 2933 5.753921 GCATCACTATACTAGTTGGTTGTCC 59.246 44.000 0.00 0.00 36.76 4.02
2896 2934 6.629515 GCATCACTATACTAGTTGGTTGTCCA 60.630 42.308 0.00 0.00 42.66 4.02
2897 2935 7.500992 CATCACTATACTAGTTGGTTGTCCAT 58.499 38.462 0.00 0.00 43.91 3.41
2898 2936 6.873997 TCACTATACTAGTTGGTTGTCCATG 58.126 40.000 0.00 0.00 43.91 3.66
2899 2937 6.439375 TCACTATACTAGTTGGTTGTCCATGT 59.561 38.462 0.00 0.00 43.91 3.21
2900 2938 6.535150 CACTATACTAGTTGGTTGTCCATGTG 59.465 42.308 0.00 0.00 43.91 3.21
2901 2939 3.857157 ACTAGTTGGTTGTCCATGTGT 57.143 42.857 0.00 0.00 43.91 3.72
2902 2940 4.164843 ACTAGTTGGTTGTCCATGTGTT 57.835 40.909 0.00 0.00 43.91 3.32
2903 2941 4.134563 ACTAGTTGGTTGTCCATGTGTTC 58.865 43.478 0.00 0.00 43.91 3.18
2904 2942 3.297134 AGTTGGTTGTCCATGTGTTCT 57.703 42.857 0.00 0.00 43.91 3.01
2905 2943 4.431416 AGTTGGTTGTCCATGTGTTCTA 57.569 40.909 0.00 0.00 43.91 2.10
2906 2944 4.134563 AGTTGGTTGTCCATGTGTTCTAC 58.865 43.478 0.00 0.00 43.91 2.59
2907 2945 3.847671 TGGTTGTCCATGTGTTCTACA 57.152 42.857 0.00 0.00 44.87 2.74
2908 2946 3.472652 TGGTTGTCCATGTGTTCTACAC 58.527 45.455 3.08 3.08 43.27 2.90
2909 2947 3.746114 TGGTTGTCCATGTGTTCTACACC 60.746 47.826 7.43 0.00 42.53 4.16
2916 2954 3.284197 GTGTTCTACACCGCACACT 57.716 52.632 0.00 0.00 43.05 3.55
2917 2955 2.427232 GTGTTCTACACCGCACACTA 57.573 50.000 0.00 0.00 43.05 2.74
2918 2956 2.056577 GTGTTCTACACCGCACACTAC 58.943 52.381 0.00 0.00 43.05 2.73
2919 2957 1.958579 TGTTCTACACCGCACACTACT 59.041 47.619 0.00 0.00 0.00 2.57
2920 2958 2.363038 TGTTCTACACCGCACACTACTT 59.637 45.455 0.00 0.00 0.00 2.24
2921 2959 2.717580 TCTACACCGCACACTACTTG 57.282 50.000 0.00 0.00 0.00 3.16
2922 2960 1.068474 CTACACCGCACACTACTTGC 58.932 55.000 0.00 0.00 36.57 4.01
2923 2961 0.320073 TACACCGCACACTACTTGCC 60.320 55.000 0.00 0.00 36.57 4.52
2924 2962 2.032071 ACCGCACACTACTTGCCC 59.968 61.111 0.00 0.00 36.57 5.36
2925 2963 2.347490 CCGCACACTACTTGCCCT 59.653 61.111 0.00 0.00 36.57 5.19
2926 2964 2.034879 CCGCACACTACTTGCCCTG 61.035 63.158 0.00 0.00 36.57 4.45
2927 2965 2.680913 CGCACACTACTTGCCCTGC 61.681 63.158 0.00 0.00 36.57 4.85
2928 2966 1.302832 GCACACTACTTGCCCTGCT 60.303 57.895 0.00 0.00 33.58 4.24
2929 2967 0.890996 GCACACTACTTGCCCTGCTT 60.891 55.000 0.00 0.00 33.58 3.91
2930 2968 1.610624 GCACACTACTTGCCCTGCTTA 60.611 52.381 0.00 0.00 33.58 3.09
2931 2969 2.350522 CACACTACTTGCCCTGCTTAG 58.649 52.381 0.00 0.00 0.00 2.18
2932 2970 1.978580 ACACTACTTGCCCTGCTTAGT 59.021 47.619 0.00 0.00 0.00 2.24
2933 2971 2.372172 ACACTACTTGCCCTGCTTAGTT 59.628 45.455 0.00 0.00 0.00 2.24
2934 2972 3.181443 ACACTACTTGCCCTGCTTAGTTT 60.181 43.478 0.00 0.00 0.00 2.66
2935 2973 3.189287 CACTACTTGCCCTGCTTAGTTTG 59.811 47.826 0.00 0.00 0.00 2.93
2936 2974 0.961753 ACTTGCCCTGCTTAGTTTGC 59.038 50.000 0.00 0.00 0.00 3.68
2937 2975 1.251251 CTTGCCCTGCTTAGTTTGCT 58.749 50.000 0.00 0.00 0.00 3.91
2938 2976 1.615392 CTTGCCCTGCTTAGTTTGCTT 59.385 47.619 0.00 0.00 0.00 3.91
2939 2977 0.961019 TGCCCTGCTTAGTTTGCTTG 59.039 50.000 0.00 0.00 0.00 4.01
2940 2978 0.389037 GCCCTGCTTAGTTTGCTTGC 60.389 55.000 0.00 0.00 0.00 4.01
2941 2979 1.251251 CCCTGCTTAGTTTGCTTGCT 58.749 50.000 0.00 0.00 0.00 3.91
2942 2980 1.068055 CCCTGCTTAGTTTGCTTGCTG 60.068 52.381 0.00 0.00 0.00 4.41
2943 2981 1.610522 CCTGCTTAGTTTGCTTGCTGT 59.389 47.619 0.00 0.00 0.00 4.40
2944 2982 2.035066 CCTGCTTAGTTTGCTTGCTGTT 59.965 45.455 0.00 0.00 0.00 3.16
2945 2983 3.491447 CCTGCTTAGTTTGCTTGCTGTTT 60.491 43.478 0.00 0.00 0.00 2.83
2946 2984 4.114794 CTGCTTAGTTTGCTTGCTGTTTT 58.885 39.130 0.00 0.00 0.00 2.43
2947 2985 3.864583 TGCTTAGTTTGCTTGCTGTTTTG 59.135 39.130 0.00 0.00 0.00 2.44
2948 2986 3.865164 GCTTAGTTTGCTTGCTGTTTTGT 59.135 39.130 0.00 0.00 0.00 2.83
2949 2987 4.259930 GCTTAGTTTGCTTGCTGTTTTGTG 60.260 41.667 0.00 0.00 0.00 3.33
2950 2988 2.001872 AGTTTGCTTGCTGTTTTGTGC 58.998 42.857 0.00 0.00 0.00 4.57
2951 2989 2.001872 GTTTGCTTGCTGTTTTGTGCT 58.998 42.857 0.00 0.00 0.00 4.40
2952 2990 3.119173 AGTTTGCTTGCTGTTTTGTGCTA 60.119 39.130 0.00 0.00 0.00 3.49
2953 2991 2.780065 TGCTTGCTGTTTTGTGCTAG 57.220 45.000 0.00 0.00 35.70 3.42
2954 2992 1.337703 TGCTTGCTGTTTTGTGCTAGG 59.662 47.619 0.00 0.00 33.82 3.02
2955 2993 1.338020 GCTTGCTGTTTTGTGCTAGGT 59.662 47.619 0.00 0.00 33.82 3.08
2956 2994 2.223805 GCTTGCTGTTTTGTGCTAGGTT 60.224 45.455 0.00 0.00 33.82 3.50
2957 2995 3.374745 CTTGCTGTTTTGTGCTAGGTTG 58.625 45.455 0.00 0.00 0.00 3.77
2958 2996 1.680735 TGCTGTTTTGTGCTAGGTTGG 59.319 47.619 0.00 0.00 0.00 3.77
2959 2997 1.602920 GCTGTTTTGTGCTAGGTTGGC 60.603 52.381 0.00 0.00 0.00 4.52
2960 2998 1.956477 CTGTTTTGTGCTAGGTTGGCT 59.044 47.619 0.00 0.00 0.00 4.75
2961 2999 1.680735 TGTTTTGTGCTAGGTTGGCTG 59.319 47.619 0.00 0.00 0.00 4.85
2962 3000 1.681264 GTTTTGTGCTAGGTTGGCTGT 59.319 47.619 0.00 0.00 0.00 4.40
2963 3001 1.604604 TTTGTGCTAGGTTGGCTGTC 58.395 50.000 0.00 0.00 0.00 3.51
2964 3002 0.764890 TTGTGCTAGGTTGGCTGTCT 59.235 50.000 0.00 0.00 0.00 3.41
2965 3003 1.639722 TGTGCTAGGTTGGCTGTCTA 58.360 50.000 0.00 0.00 0.00 2.59
2966 3004 1.275291 TGTGCTAGGTTGGCTGTCTAC 59.725 52.381 0.00 0.00 0.00 2.59
2967 3005 0.530744 TGCTAGGTTGGCTGTCTACG 59.469 55.000 0.00 0.00 0.00 3.51
2968 3006 0.806492 GCTAGGTTGGCTGTCTACGC 60.806 60.000 0.00 0.00 0.00 4.42
2969 3007 0.525668 CTAGGTTGGCTGTCTACGCG 60.526 60.000 3.53 3.53 0.00 6.01
2970 3008 1.246056 TAGGTTGGCTGTCTACGCGT 61.246 55.000 19.17 19.17 0.00 6.01
2971 3009 1.666872 GGTTGGCTGTCTACGCGTT 60.667 57.895 20.78 0.80 0.00 4.84
2972 3010 1.491563 GTTGGCTGTCTACGCGTTG 59.508 57.895 20.78 17.33 0.00 4.10
2973 3011 1.068417 TTGGCTGTCTACGCGTTGT 59.932 52.632 20.78 0.00 0.00 3.32
2974 3012 0.531090 TTGGCTGTCTACGCGTTGTT 60.531 50.000 20.78 0.00 0.00 2.83
2975 3013 0.942410 TGGCTGTCTACGCGTTGTTC 60.942 55.000 20.78 13.73 0.00 3.18
2976 3014 0.942410 GGCTGTCTACGCGTTGTTCA 60.942 55.000 20.78 17.41 0.00 3.18
2977 3015 0.435008 GCTGTCTACGCGTTGTTCAG 59.565 55.000 27.22 27.22 0.00 3.02
2978 3016 1.767289 CTGTCTACGCGTTGTTCAGT 58.233 50.000 20.78 0.00 0.00 3.41
2979 3017 2.124903 CTGTCTACGCGTTGTTCAGTT 58.875 47.619 20.78 0.00 0.00 3.16
2980 3018 2.538449 CTGTCTACGCGTTGTTCAGTTT 59.462 45.455 20.78 0.00 0.00 2.66
2981 3019 2.283086 TGTCTACGCGTTGTTCAGTTTG 59.717 45.455 20.78 0.00 0.00 2.93
2982 3020 1.259507 TCTACGCGTTGTTCAGTTTGC 59.740 47.619 20.78 0.00 0.00 3.68
2983 3021 1.004398 CTACGCGTTGTTCAGTTTGCA 60.004 47.619 20.78 0.00 0.00 4.08
2984 3022 0.522495 ACGCGTTGTTCAGTTTGCAC 60.522 50.000 5.58 0.00 0.00 4.57
2986 3024 1.623359 GCGTTGTTCAGTTTGCACAA 58.377 45.000 0.00 0.00 31.46 3.33
3011 3049 1.952296 CCTGATTAGTTGGCTGCATCC 59.048 52.381 0.00 0.00 0.00 3.51
3012 3050 2.646930 CTGATTAGTTGGCTGCATCCA 58.353 47.619 4.84 4.84 0.00 3.41
3017 3055 1.755179 AGTTGGCTGCATCCATGTAC 58.245 50.000 10.67 5.94 35.77 2.90
3021 3059 2.118679 TGGCTGCATCCATGTACTAGT 58.881 47.619 4.84 0.00 0.00 2.57
3032 3070 4.348461 TCCATGTACTAGTTTGGTTGTCCA 59.652 41.667 0.00 0.00 42.66 4.02
3041 3079 4.502962 AGTTTGGTTGTCCACATGTTTTG 58.497 39.130 0.00 0.00 44.22 2.44
3043 3081 2.106566 TGGTTGTCCACATGTTTTGCT 58.893 42.857 0.00 0.00 39.03 3.91
3044 3082 2.499289 TGGTTGTCCACATGTTTTGCTT 59.501 40.909 0.00 0.00 39.03 3.91
3066 3104 5.652994 TTTTTGCACTAGTTGGTTTGTCT 57.347 34.783 0.00 0.00 0.00 3.41
3068 3106 6.952773 TTTTGCACTAGTTGGTTTGTCTAT 57.047 33.333 0.00 0.00 0.00 1.98
3069 3107 6.952773 TTTGCACTAGTTGGTTTGTCTATT 57.047 33.333 0.00 0.00 0.00 1.73
3071 3109 7.667043 TTGCACTAGTTGGTTTGTCTATTAG 57.333 36.000 0.00 0.00 0.00 1.73
3074 3112 7.816031 TGCACTAGTTGGTTTGTCTATTAGTAC 59.184 37.037 0.00 0.00 0.00 2.73
3075 3113 8.033626 GCACTAGTTGGTTTGTCTATTAGTACT 58.966 37.037 0.00 0.00 0.00 2.73
3079 3117 8.661752 AGTTGGTTTGTCTATTAGTACTAGGT 57.338 34.615 2.23 0.00 0.00 3.08
3080 3118 9.097946 AGTTGGTTTGTCTATTAGTACTAGGTT 57.902 33.333 2.23 0.00 0.00 3.50
3081 3119 9.148104 GTTGGTTTGTCTATTAGTACTAGGTTG 57.852 37.037 2.23 0.00 0.00 3.77
3086 3124 9.933723 TTTGTCTATTAGTACTAGGTTGGTTTC 57.066 33.333 2.23 0.00 0.00 2.78
3087 3125 8.071177 TGTCTATTAGTACTAGGTTGGTTTCC 57.929 38.462 2.23 0.00 0.00 3.13
3089 3127 8.196103 GTCTATTAGTACTAGGTTGGTTTCCTG 58.804 40.741 2.23 0.00 36.60 3.86
3090 3128 6.947376 ATTAGTACTAGGTTGGTTTCCTGT 57.053 37.500 2.23 0.00 36.60 4.00
3091 3129 6.752285 TTAGTACTAGGTTGGTTTCCTGTT 57.248 37.500 2.23 0.00 36.60 3.16
3092 3130 5.641789 AGTACTAGGTTGGTTTCCTGTTT 57.358 39.130 0.00 0.00 36.60 2.83
3093 3131 5.374071 AGTACTAGGTTGGTTTCCTGTTTG 58.626 41.667 0.00 0.00 36.60 2.93
3094 3132 4.245251 ACTAGGTTGGTTTCCTGTTTGT 57.755 40.909 0.00 0.00 36.60 2.83
3095 3133 4.204799 ACTAGGTTGGTTTCCTGTTTGTC 58.795 43.478 0.00 0.00 36.60 3.18
3110 4272 3.118038 TGTTTGTCTAGTTGGCTTCCTGT 60.118 43.478 0.00 0.00 0.00 4.00
3131 4293 6.127563 CCTGTTTTGTACTAGGTTGGTTTGTT 60.128 38.462 0.00 0.00 0.00 2.83
3258 4420 1.071071 TGCACAGTACCACCCACTTAC 59.929 52.381 0.00 0.00 0.00 2.34
3503 4684 6.098695 TGAGACTGGAATCATACACATCATGA 59.901 38.462 0.00 0.00 36.86 3.07
3631 4814 3.507622 CCAACCAGGGAGTCTTTTTCATC 59.492 47.826 0.00 0.00 0.00 2.92
3787 4971 5.014858 GCCCACATGATCCATCTCATATTT 58.985 41.667 0.00 0.00 34.11 1.40
3875 5059 5.829924 ACCTGTTTCAACTTTCACATCTCAT 59.170 36.000 0.00 0.00 0.00 2.90
3937 5122 1.288419 TGAATCGTTCACGCGTGCAT 61.288 50.000 33.63 18.71 39.60 3.96
3963 5148 4.395583 GCCAGTGCTTGAGTGCGC 62.396 66.667 0.00 0.00 43.09 6.09
4083 5268 5.813383 AGAAGACATTGAGTTGATGGACAT 58.187 37.500 0.00 0.00 0.00 3.06
4106 5292 2.124901 CTACGATTGCGGGGGCAA 60.125 61.111 3.78 3.78 43.17 4.52
4147 5333 2.167075 GCATTACCCAAAGCAGAGCATT 59.833 45.455 0.00 0.00 0.00 3.56
4181 5367 3.615496 GCTTATTGACATTGACGTACCGT 59.385 43.478 0.00 0.00 45.10 4.83
4428 5619 4.522405 ACATAATTAGTTGCACAGTGCCAA 59.478 37.500 23.06 13.75 44.23 4.52
4604 5797 5.072193 TCAGGAAGAAGCTGGCATATGATTA 59.928 40.000 6.97 0.00 0.00 1.75
4611 5804 2.738846 GCTGGCATATGATTAGGTCACG 59.261 50.000 6.97 0.00 40.28 4.35
4660 5853 3.409026 AGGTGCTGAGATTCGAAAAGT 57.591 42.857 0.00 0.00 0.00 2.66
4669 5862 5.877031 TGAGATTCGAAAAGTACTAGGTCG 58.123 41.667 0.00 13.70 0.00 4.79
4835 6038 9.716507 GCATACAATTGTTCGACAAGTAAATAT 57.283 29.630 17.78 0.00 41.94 1.28
4978 6183 5.870978 CCCTAAATTGCTCAAAAACCATCAG 59.129 40.000 0.00 0.00 0.00 2.90
5017 6222 7.394923 TCCCCTTTTTGATACAAACGATACAAT 59.605 33.333 0.00 0.00 0.00 2.71
5030 6235 7.280876 ACAAACGATACAATAGAATCACAGCAT 59.719 33.333 0.00 0.00 0.00 3.79
5111 6316 2.708861 TCTTCTTTGGGTGTAGCTCCAA 59.291 45.455 0.56 0.56 40.85 3.53
5131 6336 1.072116 CGCCGATTTGTACCGTCGAA 61.072 55.000 11.67 0.00 37.55 3.71
5137 6342 3.855379 CGATTTGTACCGTCGAATCTTCA 59.145 43.478 0.00 0.00 36.56 3.02
5160 6365 3.959449 CCCTACCCTTTGTAGTAGACCTC 59.041 52.174 0.00 0.00 44.66 3.85
5222 6427 4.330056 TGGAGCCTCCAACTTGGA 57.670 55.556 12.03 10.23 45.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 120 9.332713 CCTCTATTTATAGGGAGAAGGAAGAAT 57.667 37.037 0.00 0.00 32.47 2.40
204 216 3.043713 CTTCGCCAAGCTCACGCA 61.044 61.111 0.00 0.00 39.10 5.24
262 274 3.574074 AAGGCTCCAACCGCAGCAT 62.574 57.895 0.00 0.00 37.38 3.79
269 281 0.693049 TGAGGAAGAAGGCTCCAACC 59.307 55.000 0.00 0.00 0.00 3.77
410 422 0.963962 GGTTGGAGGAGTCGTACACA 59.036 55.000 0.00 0.00 0.00 3.72
571 584 1.634973 TCACTGCTTCCATTGGATCCA 59.365 47.619 11.44 11.44 0.00 3.41
584 597 3.260128 TCATCATCTGAACTGTCACTGCT 59.740 43.478 0.00 0.00 0.00 4.24
608 623 1.077663 AGAACCAGGGGCATTGTCATT 59.922 47.619 0.00 0.00 0.00 2.57
676 691 0.886563 GGCTGCTCATTGAGTTGCTT 59.113 50.000 22.48 0.00 33.39 3.91
695 710 1.995484 CAACATCTGTAGTGTGCTCCG 59.005 52.381 0.00 0.00 0.00 4.63
726 741 4.261741 GCAGATTCTTGTCTTTCCAGCAAA 60.262 41.667 0.00 0.00 0.00 3.68
865 888 7.096065 GCAAAATTAATCTTGTCACACAACTCC 60.096 37.037 3.56 0.00 33.96 3.85
884 907 8.530341 GAACAGTTTCTGGTCAACAGCAAAATT 61.530 37.037 9.54 0.00 46.41 1.82
904 927 2.703007 AGCCTCACTCAAGAAGAACAGT 59.297 45.455 0.00 0.00 0.00 3.55
947 970 0.772124 AGACCCTTCCCTGCTTCCAA 60.772 55.000 0.00 0.00 0.00 3.53
948 971 0.772124 AAGACCCTTCCCTGCTTCCA 60.772 55.000 0.00 0.00 0.00 3.53
973 996 6.595716 CCTTGTATTTCTCCTTCGAATGAACT 59.404 38.462 0.00 1.63 0.00 3.01
1075 1098 5.947228 TCATTGTAACTCCTTTGCTCTTG 57.053 39.130 0.00 0.00 0.00 3.02
1197 1220 3.055819 GGTTGGCTCTCTGATCACTACAA 60.056 47.826 0.00 0.00 0.00 2.41
1268 1291 1.558756 CCCCTTGATCTGTTGAGCTCT 59.441 52.381 16.19 0.00 0.00 4.09
1272 1295 3.988976 TCTTCCCCTTGATCTGTTGAG 57.011 47.619 0.00 0.00 0.00 3.02
1329 1352 1.000274 ACTTGACAATCTTTTGCGGGC 60.000 47.619 0.00 0.00 36.22 6.13
1330 1353 3.369546 AACTTGACAATCTTTTGCGGG 57.630 42.857 0.00 0.00 36.22 6.13
1331 1354 3.060339 GCAAACTTGACAATCTTTTGCGG 60.060 43.478 18.60 0.00 41.73 5.69
1332 1355 4.106288 GCAAACTTGACAATCTTTTGCG 57.894 40.909 18.60 0.00 41.73 4.85
1369 1392 1.464198 ACCTTCCCTGCCCTGTTCT 60.464 57.895 0.00 0.00 0.00 3.01
1624 1648 3.366679 GGAGACGACCGTTTGACAGATTA 60.367 47.826 0.00 0.00 0.00 1.75
1637 1661 0.456628 GGTAGCTCTTGGAGACGACC 59.543 60.000 0.00 3.03 30.39 4.79
1639 1663 1.654954 GCGGTAGCTCTTGGAGACGA 61.655 60.000 0.00 0.00 41.01 4.20
1657 1681 1.811359 AGACTTGCTTGAATGCTCTGC 59.189 47.619 0.00 0.00 0.00 4.26
1701 1725 3.815401 CCTCCTCCTGTGTTAAACTGTTG 59.185 47.826 0.00 0.00 0.00 3.33
1716 1740 2.863809 ACAATGTTGAACACCTCCTCC 58.136 47.619 0.00 0.00 0.00 4.30
1766 1790 5.428253 ACCTGATTCGCAGTAATGTTGTAT 58.572 37.500 0.00 0.00 43.33 2.29
1784 1808 0.249955 TGCATCATTCGCTGACCTGA 59.750 50.000 0.00 0.00 36.48 3.86
1895 1920 0.893727 GCCCAGGTCGAATGTTGGTT 60.894 55.000 0.00 0.00 0.00 3.67
1902 1927 1.051812 CATCTAGGCCCAGGTCGAAT 58.948 55.000 0.00 0.00 0.00 3.34
2147 2172 1.684450 TCTGTCTTCGTGCAACAGGTA 59.316 47.619 13.98 0.00 40.60 3.08
2214 2239 9.665264 GAGTTGAAGGTCTTATTTTTGTTGTAG 57.335 33.333 0.00 0.00 0.00 2.74
2226 2251 4.628074 CCTCGTTTGAGTTGAAGGTCTTA 58.372 43.478 0.00 0.00 40.85 2.10
2273 2298 5.882557 GGAATATGCCTGACCCAATACATAG 59.117 44.000 0.00 0.00 0.00 2.23
2275 2300 4.106179 TGGAATATGCCTGACCCAATACAT 59.894 41.667 0.11 0.00 0.00 2.29
2295 2320 6.013379 GGTATTCTCATCATCTACTCCTGGA 58.987 44.000 0.00 0.00 0.00 3.86
2303 2328 5.512060 GCTTGCCTGGTATTCTCATCATCTA 60.512 44.000 0.00 0.00 0.00 1.98
2395 2420 2.723231 TGTGCAACATGCTCTGCTT 58.277 47.368 14.09 0.00 45.67 3.91
2396 2421 4.486887 TGTGCAACATGCTCTGCT 57.513 50.000 14.09 0.00 45.67 4.24
2406 2431 4.829064 TCAAACCACTATTCTGTGCAAC 57.171 40.909 0.00 0.00 36.68 4.17
2407 2432 6.215121 CAATTCAAACCACTATTCTGTGCAA 58.785 36.000 0.00 0.00 36.68 4.08
2408 2433 5.771469 CAATTCAAACCACTATTCTGTGCA 58.229 37.500 0.00 0.00 36.68 4.57
2409 2434 4.622740 GCAATTCAAACCACTATTCTGTGC 59.377 41.667 0.00 0.00 36.68 4.57
2410 2435 5.630680 GTGCAATTCAAACCACTATTCTGTG 59.369 40.000 0.00 0.00 37.66 3.66
2411 2436 5.301551 TGTGCAATTCAAACCACTATTCTGT 59.698 36.000 0.00 0.00 0.00 3.41
2412 2437 5.630680 GTGTGCAATTCAAACCACTATTCTG 59.369 40.000 0.00 0.00 0.00 3.02
2413 2438 5.536161 AGTGTGCAATTCAAACCACTATTCT 59.464 36.000 0.89 0.00 33.21 2.40
2414 2439 5.772521 AGTGTGCAATTCAAACCACTATTC 58.227 37.500 0.89 0.00 33.21 1.75
2415 2440 5.789643 AGTGTGCAATTCAAACCACTATT 57.210 34.783 0.89 0.00 33.21 1.73
2416 2441 5.789643 AAGTGTGCAATTCAAACCACTAT 57.210 34.783 3.13 0.00 33.21 2.12
2417 2442 5.590530 AAAGTGTGCAATTCAAACCACTA 57.409 34.783 3.13 0.00 33.21 2.74
2418 2443 4.470334 AAAGTGTGCAATTCAAACCACT 57.530 36.364 0.00 0.00 33.21 4.00
2419 2444 5.106752 ACAAAAAGTGTGCAATTCAAACCAC 60.107 36.000 0.00 0.00 39.72 4.16
2420 2445 4.999950 ACAAAAAGTGTGCAATTCAAACCA 59.000 33.333 0.00 0.00 39.72 3.67
2421 2446 5.544136 ACAAAAAGTGTGCAATTCAAACC 57.456 34.783 0.00 0.00 39.72 3.27
2422 2447 7.850268 AAAACAAAAAGTGTGCAATTCAAAC 57.150 28.000 0.00 0.00 40.60 2.93
2445 2470 8.336806 CAACATGCTCTGCTTTGAAATTAAAAA 58.663 29.630 0.00 0.00 0.00 1.94
2446 2471 7.518689 GCAACATGCTCTGCTTTGAAATTAAAA 60.519 33.333 7.57 0.00 40.96 1.52
2447 2472 6.073657 GCAACATGCTCTGCTTTGAAATTAAA 60.074 34.615 7.57 0.00 40.96 1.52
2448 2473 5.406175 GCAACATGCTCTGCTTTGAAATTAA 59.594 36.000 7.57 0.00 40.96 1.40
2449 2474 4.925054 GCAACATGCTCTGCTTTGAAATTA 59.075 37.500 7.57 0.00 40.96 1.40
2450 2475 3.744426 GCAACATGCTCTGCTTTGAAATT 59.256 39.130 7.57 0.00 40.96 1.82
2451 2476 3.243941 TGCAACATGCTCTGCTTTGAAAT 60.244 39.130 14.09 0.00 45.31 2.17
2452 2477 2.101082 TGCAACATGCTCTGCTTTGAAA 59.899 40.909 14.09 0.00 45.31 2.69
2453 2478 1.682323 TGCAACATGCTCTGCTTTGAA 59.318 42.857 14.09 0.00 45.31 2.69
2454 2479 1.001048 GTGCAACATGCTCTGCTTTGA 60.001 47.619 14.09 0.00 45.31 2.69
2455 2480 1.269361 TGTGCAACATGCTCTGCTTTG 60.269 47.619 14.09 1.92 45.67 2.77
2456 2481 1.034356 TGTGCAACATGCTCTGCTTT 58.966 45.000 14.09 0.00 45.67 3.51
2504 2529 6.767423 ACCACTCTGCTTTGCAATTTAAAAAT 59.233 30.769 0.00 0.00 38.41 1.82
2560 2588 0.032952 AGCTTTCGAACACCGTAGCA 59.967 50.000 17.03 0.00 43.76 3.49
2691 2729 9.574458 TCGACATAGATTTTGAAGAAGAACTAG 57.426 33.333 0.00 0.00 0.00 2.57
2692 2730 9.574458 CTCGACATAGATTTTGAAGAAGAACTA 57.426 33.333 0.00 0.00 0.00 2.24
2693 2731 8.091449 ACTCGACATAGATTTTGAAGAAGAACT 58.909 33.333 0.00 0.00 0.00 3.01
2694 2732 8.245701 ACTCGACATAGATTTTGAAGAAGAAC 57.754 34.615 0.00 0.00 0.00 3.01
2695 2733 8.833231 AACTCGACATAGATTTTGAAGAAGAA 57.167 30.769 0.00 0.00 0.00 2.52
2696 2734 8.088365 TGAACTCGACATAGATTTTGAAGAAGA 58.912 33.333 0.00 0.00 0.00 2.87
2697 2735 8.244494 TGAACTCGACATAGATTTTGAAGAAG 57.756 34.615 0.00 0.00 0.00 2.85
2698 2736 8.601845 TTGAACTCGACATAGATTTTGAAGAA 57.398 30.769 0.00 0.00 0.00 2.52
2699 2737 7.872993 ACTTGAACTCGACATAGATTTTGAAGA 59.127 33.333 0.00 0.00 0.00 2.87
2700 2738 8.023050 ACTTGAACTCGACATAGATTTTGAAG 57.977 34.615 0.00 0.00 0.00 3.02
2701 2739 7.962964 ACTTGAACTCGACATAGATTTTGAA 57.037 32.000 0.00 0.00 0.00 2.69
2702 2740 7.872993 AGAACTTGAACTCGACATAGATTTTGA 59.127 33.333 0.00 0.00 0.00 2.69
2703 2741 8.023050 AGAACTTGAACTCGACATAGATTTTG 57.977 34.615 0.00 0.00 0.00 2.44
2704 2742 9.877178 ATAGAACTTGAACTCGACATAGATTTT 57.123 29.630 0.00 0.00 0.00 1.82
2705 2743 9.307121 CATAGAACTTGAACTCGACATAGATTT 57.693 33.333 0.00 0.00 0.00 2.17
2706 2744 8.470805 ACATAGAACTTGAACTCGACATAGATT 58.529 33.333 0.00 0.00 0.00 2.40
2707 2745 8.001881 ACATAGAACTTGAACTCGACATAGAT 57.998 34.615 0.00 0.00 0.00 1.98
2708 2746 7.392494 ACATAGAACTTGAACTCGACATAGA 57.608 36.000 0.00 0.00 0.00 1.98
2709 2747 7.542477 ACAACATAGAACTTGAACTCGACATAG 59.458 37.037 0.00 0.00 0.00 2.23
2710 2748 7.375834 ACAACATAGAACTTGAACTCGACATA 58.624 34.615 0.00 0.00 0.00 2.29
2711 2749 6.223852 ACAACATAGAACTTGAACTCGACAT 58.776 36.000 0.00 0.00 0.00 3.06
2712 2750 5.597806 ACAACATAGAACTTGAACTCGACA 58.402 37.500 0.00 0.00 0.00 4.35
2713 2751 6.421202 AGAACAACATAGAACTTGAACTCGAC 59.579 38.462 0.00 0.00 0.00 4.20
2714 2752 6.513180 AGAACAACATAGAACTTGAACTCGA 58.487 36.000 0.00 0.00 0.00 4.04
2715 2753 6.771188 AGAACAACATAGAACTTGAACTCG 57.229 37.500 0.00 0.00 0.00 4.18
2716 2754 7.442666 AGGAAGAACAACATAGAACTTGAACTC 59.557 37.037 0.00 0.00 0.00 3.01
2717 2755 7.283329 AGGAAGAACAACATAGAACTTGAACT 58.717 34.615 0.00 0.00 0.00 3.01
2718 2756 7.497925 AGGAAGAACAACATAGAACTTGAAC 57.502 36.000 0.00 0.00 0.00 3.18
2719 2757 8.429641 ACTAGGAAGAACAACATAGAACTTGAA 58.570 33.333 0.00 0.00 0.00 2.69
2720 2758 7.963532 ACTAGGAAGAACAACATAGAACTTGA 58.036 34.615 0.00 0.00 0.00 3.02
2721 2759 8.499162 CAACTAGGAAGAACAACATAGAACTTG 58.501 37.037 0.00 0.00 0.00 3.16
2722 2760 7.661847 CCAACTAGGAAGAACAACATAGAACTT 59.338 37.037 0.00 0.00 41.22 2.66
2723 2761 7.162082 CCAACTAGGAAGAACAACATAGAACT 58.838 38.462 0.00 0.00 41.22 3.01
2724 2762 6.128254 GCCAACTAGGAAGAACAACATAGAAC 60.128 42.308 0.00 0.00 41.22 3.01
2725 2763 5.938125 GCCAACTAGGAAGAACAACATAGAA 59.062 40.000 0.00 0.00 41.22 2.10
2726 2764 5.248477 AGCCAACTAGGAAGAACAACATAGA 59.752 40.000 0.00 0.00 41.22 1.98
2727 2765 5.352569 CAGCCAACTAGGAAGAACAACATAG 59.647 44.000 0.00 0.00 41.22 2.23
2728 2766 5.245531 CAGCCAACTAGGAAGAACAACATA 58.754 41.667 0.00 0.00 41.22 2.29
2729 2767 4.074970 CAGCCAACTAGGAAGAACAACAT 58.925 43.478 0.00 0.00 41.22 2.71
2730 2768 3.476552 CAGCCAACTAGGAAGAACAACA 58.523 45.455 0.00 0.00 41.22 3.33
2731 2769 2.226674 GCAGCCAACTAGGAAGAACAAC 59.773 50.000 0.00 0.00 41.22 3.32
2732 2770 2.158682 TGCAGCCAACTAGGAAGAACAA 60.159 45.455 0.00 0.00 41.22 2.83
2733 2771 1.419762 TGCAGCCAACTAGGAAGAACA 59.580 47.619 0.00 0.00 41.22 3.18
2734 2772 2.185004 TGCAGCCAACTAGGAAGAAC 57.815 50.000 0.00 0.00 41.22 3.01
2735 2773 2.504367 GTTGCAGCCAACTAGGAAGAA 58.496 47.619 0.00 0.00 46.13 2.52
2736 2774 2.185004 GTTGCAGCCAACTAGGAAGA 57.815 50.000 0.00 0.00 46.13 2.87
2745 2783 3.023119 CCTAATATGTGGTTGCAGCCAA 58.977 45.455 25.06 14.59 40.68 4.52
2746 2784 2.025416 ACCTAATATGTGGTTGCAGCCA 60.025 45.455 19.51 19.51 35.93 4.75
2747 2785 2.358898 CACCTAATATGTGGTTGCAGCC 59.641 50.000 13.50 13.50 33.75 4.85
2748 2786 2.358898 CCACCTAATATGTGGTTGCAGC 59.641 50.000 6.57 0.00 46.62 5.25
2768 2806 3.878778 ACAGAAGAGCATATGGACAACC 58.121 45.455 4.56 0.00 0.00 3.77
2769 2807 4.437930 GCAACAGAAGAGCATATGGACAAC 60.438 45.833 4.56 0.00 0.00 3.32
2770 2808 3.691118 GCAACAGAAGAGCATATGGACAA 59.309 43.478 4.56 0.00 0.00 3.18
2771 2809 3.273434 GCAACAGAAGAGCATATGGACA 58.727 45.455 4.56 0.00 0.00 4.02
2772 2810 3.064545 GTGCAACAGAAGAGCATATGGAC 59.935 47.826 4.56 0.00 40.78 4.02
2773 2811 3.054875 AGTGCAACAGAAGAGCATATGGA 60.055 43.478 4.56 0.00 41.43 3.41
2774 2812 3.276857 AGTGCAACAGAAGAGCATATGG 58.723 45.455 4.56 0.00 41.43 2.74
2775 2813 5.114780 ACTAGTGCAACAGAAGAGCATATG 58.885 41.667 0.00 0.00 41.43 1.78
2776 2814 5.350504 ACTAGTGCAACAGAAGAGCATAT 57.649 39.130 0.00 0.00 41.43 1.78
2777 2815 4.808414 ACTAGTGCAACAGAAGAGCATA 57.192 40.909 0.00 0.00 41.43 3.14
2778 2816 3.692257 ACTAGTGCAACAGAAGAGCAT 57.308 42.857 0.00 0.00 41.43 3.79
2779 2817 3.133691 CAACTAGTGCAACAGAAGAGCA 58.866 45.455 0.00 0.00 41.43 4.26
2780 2818 3.134458 ACAACTAGTGCAACAGAAGAGC 58.866 45.455 0.00 0.00 41.43 4.09
2781 2819 4.626042 AGACAACTAGTGCAACAGAAGAG 58.374 43.478 0.00 0.00 41.43 2.85
2782 2820 4.672587 AGACAACTAGTGCAACAGAAGA 57.327 40.909 0.00 0.00 41.43 2.87
2783 2821 5.986135 AGTAAGACAACTAGTGCAACAGAAG 59.014 40.000 0.00 0.00 41.43 2.85
2784 2822 5.753438 CAGTAAGACAACTAGTGCAACAGAA 59.247 40.000 0.00 0.00 41.43 3.02
2785 2823 5.163447 ACAGTAAGACAACTAGTGCAACAGA 60.163 40.000 0.00 0.00 41.43 3.41
2786 2824 5.050490 ACAGTAAGACAACTAGTGCAACAG 58.950 41.667 0.00 0.00 41.43 3.16
2787 2825 5.018539 ACAGTAAGACAACTAGTGCAACA 57.981 39.130 0.00 0.00 41.43 3.33
2788 2826 5.986004 AACAGTAAGACAACTAGTGCAAC 57.014 39.130 0.00 0.00 0.00 4.17
2789 2827 5.878116 ACAAACAGTAAGACAACTAGTGCAA 59.122 36.000 0.00 0.00 0.00 4.08
2790 2828 5.424757 ACAAACAGTAAGACAACTAGTGCA 58.575 37.500 0.00 0.00 0.00 4.57
2791 2829 5.986004 ACAAACAGTAAGACAACTAGTGC 57.014 39.130 0.00 0.00 0.00 4.40
2792 2830 9.395707 CTAGTACAAACAGTAAGACAACTAGTG 57.604 37.037 0.00 0.00 33.72 2.74
2793 2831 9.129532 ACTAGTACAAACAGTAAGACAACTAGT 57.870 33.333 0.00 5.69 33.66 2.57
2794 2832 9.609950 GACTAGTACAAACAGTAAGACAACTAG 57.390 37.037 0.00 0.00 33.72 2.57
2795 2833 8.285394 CGACTAGTACAAACAGTAAGACAACTA 58.715 37.037 0.00 0.00 33.72 2.24
2796 2834 7.137426 CGACTAGTACAAACAGTAAGACAACT 58.863 38.462 0.00 0.00 33.72 3.16
2797 2835 6.361748 CCGACTAGTACAAACAGTAAGACAAC 59.638 42.308 0.00 0.00 33.72 3.32
2798 2836 6.039717 ACCGACTAGTACAAACAGTAAGACAA 59.960 38.462 0.00 0.00 33.72 3.18
2799 2837 5.532406 ACCGACTAGTACAAACAGTAAGACA 59.468 40.000 0.00 0.00 33.72 3.41
2800 2838 6.006759 ACCGACTAGTACAAACAGTAAGAC 57.993 41.667 0.00 0.00 33.72 3.01
2801 2839 6.039717 ACAACCGACTAGTACAAACAGTAAGA 59.960 38.462 0.00 0.00 33.72 2.10
2802 2840 6.211515 ACAACCGACTAGTACAAACAGTAAG 58.788 40.000 0.00 0.00 33.72 2.34
2803 2841 6.039717 AGACAACCGACTAGTACAAACAGTAA 59.960 38.462 0.00 0.00 33.72 2.24
2804 2842 5.532406 AGACAACCGACTAGTACAAACAGTA 59.468 40.000 0.00 0.00 0.00 2.74
2805 2843 4.340381 AGACAACCGACTAGTACAAACAGT 59.660 41.667 0.00 0.00 0.00 3.55
2806 2844 4.868067 AGACAACCGACTAGTACAAACAG 58.132 43.478 0.00 0.00 0.00 3.16
2807 2845 4.924305 AGACAACCGACTAGTACAAACA 57.076 40.909 0.00 0.00 0.00 2.83
2808 2846 5.626955 GTGTAGACAACCGACTAGTACAAAC 59.373 44.000 0.00 0.00 0.00 2.93
2809 2847 5.560760 CGTGTAGACAACCGACTAGTACAAA 60.561 44.000 0.00 0.00 0.00 2.83
2810 2848 4.083855 CGTGTAGACAACCGACTAGTACAA 60.084 45.833 0.00 0.00 0.00 2.41
2811 2849 3.433274 CGTGTAGACAACCGACTAGTACA 59.567 47.826 0.00 0.00 0.00 2.90
2812 2850 3.726190 GCGTGTAGACAACCGACTAGTAC 60.726 52.174 0.00 0.00 0.00 2.73
2813 2851 2.416547 GCGTGTAGACAACCGACTAGTA 59.583 50.000 0.00 0.00 0.00 1.82
2814 2852 1.198637 GCGTGTAGACAACCGACTAGT 59.801 52.381 0.00 0.00 0.00 2.57
2815 2853 1.467734 AGCGTGTAGACAACCGACTAG 59.532 52.381 0.00 0.00 0.00 2.57
2816 2854 1.198408 CAGCGTGTAGACAACCGACTA 59.802 52.381 0.00 0.00 0.00 2.59
2817 2855 0.039437 CAGCGTGTAGACAACCGACT 60.039 55.000 0.00 0.00 0.00 4.18
2818 2856 0.318445 ACAGCGTGTAGACAACCGAC 60.318 55.000 0.00 0.00 0.00 4.79
2819 2857 0.386476 AACAGCGTGTAGACAACCGA 59.614 50.000 0.00 0.00 0.00 4.69
2820 2858 0.782384 GAACAGCGTGTAGACAACCG 59.218 55.000 0.00 0.00 0.00 4.44
2821 2859 1.792949 CTGAACAGCGTGTAGACAACC 59.207 52.381 0.00 0.00 0.00 3.77
2822 2860 1.792949 CCTGAACAGCGTGTAGACAAC 59.207 52.381 0.00 0.00 0.00 3.32
2823 2861 1.411246 ACCTGAACAGCGTGTAGACAA 59.589 47.619 0.00 0.00 0.00 3.18
2824 2862 1.037493 ACCTGAACAGCGTGTAGACA 58.963 50.000 0.00 0.00 0.00 3.41
2825 2863 1.419374 CACCTGAACAGCGTGTAGAC 58.581 55.000 12.06 0.00 0.00 2.59
2826 2864 0.319555 GCACCTGAACAGCGTGTAGA 60.320 55.000 17.55 0.00 34.37 2.59
2827 2865 0.599991 TGCACCTGAACAGCGTGTAG 60.600 55.000 17.55 0.82 34.37 2.74
2828 2866 0.878523 GTGCACCTGAACAGCGTGTA 60.879 55.000 5.22 13.44 34.37 2.90
2829 2867 2.180204 GTGCACCTGAACAGCGTGT 61.180 57.895 5.22 2.39 34.37 4.49
2830 2868 1.713937 TTGTGCACCTGAACAGCGTG 61.714 55.000 15.69 14.41 34.53 5.34
2831 2869 1.439353 CTTGTGCACCTGAACAGCGT 61.439 55.000 15.69 0.00 34.53 5.07
2832 2870 1.280746 CTTGTGCACCTGAACAGCG 59.719 57.895 15.69 0.00 34.53 5.18
2833 2871 0.740737 AACTTGTGCACCTGAACAGC 59.259 50.000 15.69 0.00 34.53 4.40
2834 2872 3.508744 AAAACTTGTGCACCTGAACAG 57.491 42.857 15.69 3.24 34.53 3.16
2835 2873 3.367910 GGAAAAACTTGTGCACCTGAACA 60.368 43.478 15.69 0.00 0.00 3.18
2836 2874 3.119137 AGGAAAAACTTGTGCACCTGAAC 60.119 43.478 15.69 0.00 0.00 3.18
2837 2875 3.096092 AGGAAAAACTTGTGCACCTGAA 58.904 40.909 15.69 0.58 0.00 3.02
2838 2876 2.733956 AGGAAAAACTTGTGCACCTGA 58.266 42.857 15.69 0.00 0.00 3.86
2839 2877 3.632145 AGTAGGAAAAACTTGTGCACCTG 59.368 43.478 15.69 9.52 0.00 4.00
2840 2878 3.632145 CAGTAGGAAAAACTTGTGCACCT 59.368 43.478 15.69 2.92 0.00 4.00
2841 2879 3.630312 TCAGTAGGAAAAACTTGTGCACC 59.370 43.478 15.69 0.00 0.00 5.01
2842 2880 4.335594 ACTCAGTAGGAAAAACTTGTGCAC 59.664 41.667 10.75 10.75 0.00 4.57
2843 2881 4.523083 ACTCAGTAGGAAAAACTTGTGCA 58.477 39.130 0.00 0.00 0.00 4.57
2844 2882 5.273944 CAACTCAGTAGGAAAAACTTGTGC 58.726 41.667 0.00 0.00 0.00 4.57
2845 2883 5.733373 GCCAACTCAGTAGGAAAAACTTGTG 60.733 44.000 0.00 0.00 0.00 3.33
2846 2884 4.338400 GCCAACTCAGTAGGAAAAACTTGT 59.662 41.667 0.00 0.00 0.00 3.16
2847 2885 4.580580 AGCCAACTCAGTAGGAAAAACTTG 59.419 41.667 0.00 0.00 0.00 3.16
2848 2886 4.580580 CAGCCAACTCAGTAGGAAAAACTT 59.419 41.667 0.00 0.00 0.00 2.66
2849 2887 4.137543 CAGCCAACTCAGTAGGAAAAACT 58.862 43.478 0.00 0.00 0.00 2.66
2850 2888 3.304726 GCAGCCAACTCAGTAGGAAAAAC 60.305 47.826 0.00 0.00 0.00 2.43
2851 2889 2.884639 GCAGCCAACTCAGTAGGAAAAA 59.115 45.455 0.00 0.00 0.00 1.94
2852 2890 2.158682 TGCAGCCAACTCAGTAGGAAAA 60.159 45.455 0.00 0.00 0.00 2.29
2853 2891 1.419762 TGCAGCCAACTCAGTAGGAAA 59.580 47.619 0.00 0.00 0.00 3.13
2854 2892 1.055849 TGCAGCCAACTCAGTAGGAA 58.944 50.000 0.00 0.00 0.00 3.36
2855 2893 1.208052 GATGCAGCCAACTCAGTAGGA 59.792 52.381 0.00 0.00 0.00 2.94
2856 2894 1.065926 TGATGCAGCCAACTCAGTAGG 60.066 52.381 0.00 0.00 0.00 3.18
2857 2895 2.005451 GTGATGCAGCCAACTCAGTAG 58.995 52.381 0.00 0.00 0.00 2.57
2858 2896 1.625315 AGTGATGCAGCCAACTCAGTA 59.375 47.619 0.00 0.00 0.00 2.74
2859 2897 0.399454 AGTGATGCAGCCAACTCAGT 59.601 50.000 0.00 0.00 0.00 3.41
2860 2898 2.391616 TAGTGATGCAGCCAACTCAG 57.608 50.000 0.00 0.00 0.00 3.35
2861 2899 3.452264 AGTATAGTGATGCAGCCAACTCA 59.548 43.478 0.00 0.00 0.00 3.41
2862 2900 4.065321 AGTATAGTGATGCAGCCAACTC 57.935 45.455 0.00 0.00 0.00 3.01
2863 2901 5.207110 CTAGTATAGTGATGCAGCCAACT 57.793 43.478 0.00 0.00 32.85 3.16
2899 2937 1.958579 AGTAGTGTGCGGTGTAGAACA 59.041 47.619 0.00 0.00 0.00 3.18
2900 2938 2.719426 AGTAGTGTGCGGTGTAGAAC 57.281 50.000 0.00 0.00 0.00 3.01
2901 2939 2.864882 GCAAGTAGTGTGCGGTGTAGAA 60.865 50.000 0.00 0.00 31.20 2.10
2902 2940 1.336517 GCAAGTAGTGTGCGGTGTAGA 60.337 52.381 0.00 0.00 31.20 2.59
2903 2941 1.068474 GCAAGTAGTGTGCGGTGTAG 58.932 55.000 0.00 0.00 31.20 2.74
2904 2942 0.320073 GGCAAGTAGTGTGCGGTGTA 60.320 55.000 0.00 0.00 43.18 2.90
2905 2943 1.597027 GGCAAGTAGTGTGCGGTGT 60.597 57.895 0.00 0.00 43.18 4.16
2906 2944 2.325082 GGGCAAGTAGTGTGCGGTG 61.325 63.158 0.00 0.00 43.18 4.94
2907 2945 2.032071 GGGCAAGTAGTGTGCGGT 59.968 61.111 0.00 0.00 43.18 5.68
2908 2946 2.034879 CAGGGCAAGTAGTGTGCGG 61.035 63.158 0.00 0.00 43.18 5.69
2909 2947 2.680913 GCAGGGCAAGTAGTGTGCG 61.681 63.158 0.00 0.00 43.18 5.34
2910 2948 0.890996 AAGCAGGGCAAGTAGTGTGC 60.891 55.000 0.00 0.00 41.45 4.57
2911 2949 2.289694 ACTAAGCAGGGCAAGTAGTGTG 60.290 50.000 0.00 0.00 0.00 3.82
2912 2950 1.978580 ACTAAGCAGGGCAAGTAGTGT 59.021 47.619 0.00 0.00 0.00 3.55
2913 2951 2.770164 ACTAAGCAGGGCAAGTAGTG 57.230 50.000 0.00 0.00 0.00 2.74
2914 2952 3.412386 CAAACTAAGCAGGGCAAGTAGT 58.588 45.455 0.00 0.00 0.00 2.73
2915 2953 2.162408 GCAAACTAAGCAGGGCAAGTAG 59.838 50.000 0.00 0.00 0.00 2.57
2916 2954 2.159382 GCAAACTAAGCAGGGCAAGTA 58.841 47.619 0.00 0.00 0.00 2.24
2917 2955 0.961753 GCAAACTAAGCAGGGCAAGT 59.038 50.000 0.00 0.00 0.00 3.16
2918 2956 1.251251 AGCAAACTAAGCAGGGCAAG 58.749 50.000 0.00 0.00 0.00 4.01
2919 2957 1.340889 CAAGCAAACTAAGCAGGGCAA 59.659 47.619 0.00 0.00 0.00 4.52
2920 2958 0.961019 CAAGCAAACTAAGCAGGGCA 59.039 50.000 0.00 0.00 0.00 5.36
2921 2959 0.389037 GCAAGCAAACTAAGCAGGGC 60.389 55.000 0.00 0.00 0.00 5.19
2922 2960 1.068055 CAGCAAGCAAACTAAGCAGGG 60.068 52.381 0.00 0.00 31.37 4.45
2923 2961 1.610522 ACAGCAAGCAAACTAAGCAGG 59.389 47.619 0.00 0.00 31.37 4.85
2924 2962 3.360249 AACAGCAAGCAAACTAAGCAG 57.640 42.857 0.00 0.00 31.37 4.24
2925 2963 3.799281 AAACAGCAAGCAAACTAAGCA 57.201 38.095 0.00 0.00 31.37 3.91
2926 2964 3.865164 ACAAAACAGCAAGCAAACTAAGC 59.135 39.130 0.00 0.00 0.00 3.09
2927 2965 4.259930 GCACAAAACAGCAAGCAAACTAAG 60.260 41.667 0.00 0.00 0.00 2.18
2928 2966 3.616379 GCACAAAACAGCAAGCAAACTAA 59.384 39.130 0.00 0.00 0.00 2.24
2929 2967 3.119173 AGCACAAAACAGCAAGCAAACTA 60.119 39.130 0.00 0.00 0.00 2.24
2930 2968 2.001872 GCACAAAACAGCAAGCAAACT 58.998 42.857 0.00 0.00 0.00 2.66
2931 2969 2.001872 AGCACAAAACAGCAAGCAAAC 58.998 42.857 0.00 0.00 0.00 2.93
2932 2970 2.383368 AGCACAAAACAGCAAGCAAA 57.617 40.000 0.00 0.00 0.00 3.68
2933 2971 2.223782 CCTAGCACAAAACAGCAAGCAA 60.224 45.455 0.00 0.00 0.00 3.91
2934 2972 1.337703 CCTAGCACAAAACAGCAAGCA 59.662 47.619 0.00 0.00 0.00 3.91
2935 2973 1.338020 ACCTAGCACAAAACAGCAAGC 59.662 47.619 0.00 0.00 0.00 4.01
2936 2974 3.374745 CAACCTAGCACAAAACAGCAAG 58.625 45.455 0.00 0.00 0.00 4.01
2937 2975 2.100584 CCAACCTAGCACAAAACAGCAA 59.899 45.455 0.00 0.00 0.00 3.91
2938 2976 1.680735 CCAACCTAGCACAAAACAGCA 59.319 47.619 0.00 0.00 0.00 4.41
2939 2977 1.602920 GCCAACCTAGCACAAAACAGC 60.603 52.381 0.00 0.00 0.00 4.40
2940 2978 1.956477 AGCCAACCTAGCACAAAACAG 59.044 47.619 0.00 0.00 0.00 3.16
2941 2979 1.680735 CAGCCAACCTAGCACAAAACA 59.319 47.619 0.00 0.00 0.00 2.83
2942 2980 1.681264 ACAGCCAACCTAGCACAAAAC 59.319 47.619 0.00 0.00 0.00 2.43
2943 2981 1.953686 GACAGCCAACCTAGCACAAAA 59.046 47.619 0.00 0.00 0.00 2.44
2944 2982 1.142870 AGACAGCCAACCTAGCACAAA 59.857 47.619 0.00 0.00 0.00 2.83
2945 2983 0.764890 AGACAGCCAACCTAGCACAA 59.235 50.000 0.00 0.00 0.00 3.33
2946 2984 1.275291 GTAGACAGCCAACCTAGCACA 59.725 52.381 0.00 0.00 0.00 4.57
2947 2985 1.736032 CGTAGACAGCCAACCTAGCAC 60.736 57.143 0.00 0.00 0.00 4.40
2948 2986 0.530744 CGTAGACAGCCAACCTAGCA 59.469 55.000 0.00 0.00 0.00 3.49
2949 2987 0.806492 GCGTAGACAGCCAACCTAGC 60.806 60.000 0.00 0.00 0.00 3.42
2950 2988 0.525668 CGCGTAGACAGCCAACCTAG 60.526 60.000 0.00 0.00 0.00 3.02
2951 2989 1.246056 ACGCGTAGACAGCCAACCTA 61.246 55.000 11.67 0.00 0.00 3.08
2952 2990 2.095978 AACGCGTAGACAGCCAACCT 62.096 55.000 14.46 0.00 0.00 3.50
2953 2991 1.666872 AACGCGTAGACAGCCAACC 60.667 57.895 14.46 0.00 0.00 3.77
2954 2992 1.219522 ACAACGCGTAGACAGCCAAC 61.220 55.000 14.46 0.00 0.00 3.77
2955 2993 0.531090 AACAACGCGTAGACAGCCAA 60.531 50.000 14.46 0.00 0.00 4.52
2956 2994 0.942410 GAACAACGCGTAGACAGCCA 60.942 55.000 14.46 0.00 0.00 4.75
2957 2995 0.942410 TGAACAACGCGTAGACAGCC 60.942 55.000 14.46 0.00 0.00 4.85
2958 2996 0.435008 CTGAACAACGCGTAGACAGC 59.565 55.000 14.46 0.52 0.00 4.40
2959 2997 1.767289 ACTGAACAACGCGTAGACAG 58.233 50.000 14.46 20.77 32.95 3.51
2960 2998 2.212869 AACTGAACAACGCGTAGACA 57.787 45.000 14.46 10.07 0.00 3.41
2961 2999 2.887733 CAAACTGAACAACGCGTAGAC 58.112 47.619 14.46 5.39 0.00 2.59
2962 3000 1.259507 GCAAACTGAACAACGCGTAGA 59.740 47.619 14.46 0.00 0.00 2.59
2963 3001 1.004398 TGCAAACTGAACAACGCGTAG 60.004 47.619 14.46 8.57 0.00 3.51
2964 3002 1.007580 TGCAAACTGAACAACGCGTA 58.992 45.000 14.46 0.00 0.00 4.42
2965 3003 0.522495 GTGCAAACTGAACAACGCGT 60.522 50.000 5.58 5.58 0.00 6.01
2966 3004 0.522286 TGTGCAAACTGAACAACGCG 60.522 50.000 3.53 3.53 31.75 6.01
2967 3005 1.583404 CTTGTGCAAACTGAACAACGC 59.417 47.619 0.00 0.00 40.80 4.84
2968 3006 2.862512 ACTTGTGCAAACTGAACAACG 58.137 42.857 0.00 0.00 40.80 4.10
2969 3007 4.566659 CAACTTGTGCAAACTGAACAAC 57.433 40.909 0.00 0.00 40.80 3.32
2991 3029 1.952296 GGATGCAGCCAACTAATCAGG 59.048 52.381 18.08 0.00 0.00 3.86
2995 3033 3.022557 ACATGGATGCAGCCAACTAAT 57.977 42.857 30.06 8.23 42.16 1.73
2996 3034 2.512692 ACATGGATGCAGCCAACTAA 57.487 45.000 30.06 3.54 42.16 2.24
2997 3035 2.505407 AGTACATGGATGCAGCCAACTA 59.495 45.455 30.06 16.86 42.16 2.24
3044 3082 5.652994 AGACAAACCAACTAGTGCAAAAA 57.347 34.783 0.00 0.00 0.00 1.94
3049 3087 8.033626 AGTACTAATAGACAAACCAACTAGTGC 58.966 37.037 0.00 0.00 0.00 4.40
3053 3091 9.759473 ACCTAGTACTAATAGACAAACCAACTA 57.241 33.333 3.76 0.00 0.00 2.24
3054 3092 8.661752 ACCTAGTACTAATAGACAAACCAACT 57.338 34.615 3.76 0.00 0.00 3.16
3055 3093 9.148104 CAACCTAGTACTAATAGACAAACCAAC 57.852 37.037 3.76 0.00 0.00 3.77
3056 3094 8.316214 CCAACCTAGTACTAATAGACAAACCAA 58.684 37.037 3.76 0.00 0.00 3.67
3057 3095 7.455638 ACCAACCTAGTACTAATAGACAAACCA 59.544 37.037 3.76 0.00 0.00 3.67
3059 3097 9.716531 AAACCAACCTAGTACTAATAGACAAAC 57.283 33.333 3.76 0.00 0.00 2.93
3060 3098 9.933723 GAAACCAACCTAGTACTAATAGACAAA 57.066 33.333 3.76 0.00 0.00 2.83
3061 3099 8.534496 GGAAACCAACCTAGTACTAATAGACAA 58.466 37.037 3.76 0.00 0.00 3.18
3063 3101 8.196103 CAGGAAACCAACCTAGTACTAATAGAC 58.804 40.741 3.76 0.00 35.84 2.59
3064 3102 7.897565 ACAGGAAACCAACCTAGTACTAATAGA 59.102 37.037 3.76 0.00 35.84 1.98
3065 3103 8.075761 ACAGGAAACCAACCTAGTACTAATAG 57.924 38.462 3.76 0.00 35.84 1.73
3066 3104 8.439964 AACAGGAAACCAACCTAGTACTAATA 57.560 34.615 3.76 0.00 35.84 0.98
3068 3106 6.752285 AACAGGAAACCAACCTAGTACTAA 57.248 37.500 3.76 0.00 35.84 2.24
3069 3107 6.100134 ACAAACAGGAAACCAACCTAGTACTA 59.900 38.462 1.89 1.89 35.84 1.82
3071 3109 5.128205 ACAAACAGGAAACCAACCTAGTAC 58.872 41.667 0.00 0.00 35.84 2.73
3074 3112 4.461198 AGACAAACAGGAAACCAACCTAG 58.539 43.478 0.00 0.00 35.84 3.02
3075 3113 4.513406 AGACAAACAGGAAACCAACCTA 57.487 40.909 0.00 0.00 35.84 3.08
3076 3114 3.382083 AGACAAACAGGAAACCAACCT 57.618 42.857 0.00 0.00 38.40 3.50
3078 3116 5.449999 CCAACTAGACAAACAGGAAACCAAC 60.450 44.000 0.00 0.00 0.00 3.77
3079 3117 4.642885 CCAACTAGACAAACAGGAAACCAA 59.357 41.667 0.00 0.00 0.00 3.67
3080 3118 4.204012 CCAACTAGACAAACAGGAAACCA 58.796 43.478 0.00 0.00 0.00 3.67
3081 3119 3.004419 GCCAACTAGACAAACAGGAAACC 59.996 47.826 0.00 0.00 0.00 3.27
3086 3124 2.814336 GGAAGCCAACTAGACAAACAGG 59.186 50.000 0.00 0.00 0.00 4.00
3087 3125 3.499918 CAGGAAGCCAACTAGACAAACAG 59.500 47.826 0.00 0.00 0.00 3.16
3089 3127 3.477530 ACAGGAAGCCAACTAGACAAAC 58.522 45.455 0.00 0.00 0.00 2.93
3090 3128 3.857157 ACAGGAAGCCAACTAGACAAA 57.143 42.857 0.00 0.00 0.00 2.83
3091 3129 3.857157 AACAGGAAGCCAACTAGACAA 57.143 42.857 0.00 0.00 0.00 3.18
3092 3130 3.857157 AAACAGGAAGCCAACTAGACA 57.143 42.857 0.00 0.00 0.00 3.41
3093 3131 3.883489 ACAAAACAGGAAGCCAACTAGAC 59.117 43.478 0.00 0.00 0.00 2.59
3094 3132 4.164843 ACAAAACAGGAAGCCAACTAGA 57.835 40.909 0.00 0.00 0.00 2.43
3095 3133 5.063880 AGTACAAAACAGGAAGCCAACTAG 58.936 41.667 0.00 0.00 0.00 2.57
3131 4293 7.092757 CCAACCCCCAACTAAGTAGACTAATAA 60.093 40.741 0.00 0.00 0.00 1.40
3191 4353 1.214305 TGGGGAGTTGGCTTGCCTAT 61.214 55.000 13.18 0.00 0.00 2.57
3422 4603 7.912056 TCATTGAATCAACTAACTCCTTCAG 57.088 36.000 0.00 0.00 0.00 3.02
3468 4649 7.856145 ATGATTCCAGTCTCAATAACAACTC 57.144 36.000 0.00 0.00 0.00 3.01
3631 4814 0.465097 CATGGCTCAAGCACTAGGGG 60.465 60.000 4.13 0.00 44.36 4.79
3710 4894 7.556275 AGATGGTTCTTGTGTTCAAACTTCTTA 59.444 33.333 0.00 0.00 32.87 2.10
3787 4971 0.953727 GAACATGCTGTGAGTGCCAA 59.046 50.000 0.00 0.00 0.00 4.52
3820 5004 6.884280 AGGTATTTGCCAACTAATAGATGC 57.116 37.500 0.00 0.00 0.00 3.91
3963 5148 3.680937 TCCTTCGCGGTTGTTTACATTAG 59.319 43.478 6.13 0.00 0.00 1.73
3989 5174 3.096092 TGTTGAAGACCCAATAATGCCC 58.904 45.455 0.00 0.00 0.00 5.36
4106 5292 1.620819 CTTCCTCCATAGCTGGCGTAT 59.379 52.381 0.00 0.00 42.80 3.06
4147 5333 3.244526 TGTCAATAAGCTGGAAGTGCTCA 60.245 43.478 0.00 0.00 40.22 4.26
4181 5367 7.170393 TCTTGTCTTACTTGCTAATCTGCTA 57.830 36.000 0.00 0.00 0.00 3.49
4301 5491 9.768662 AGTCATAAAAATGAAAAACAGATTGCT 57.231 25.926 0.00 0.00 31.60 3.91
4500 5692 0.666274 TAAGCAGTGCGAACAGACCG 60.666 55.000 10.00 0.00 0.00 4.79
4611 5804 3.426568 GCAGAGTTGTGCGGGCTC 61.427 66.667 0.00 0.00 32.74 4.70
4978 6183 6.411376 TCAAAAAGGGGAAAAAGGAAAAGAC 58.589 36.000 0.00 0.00 0.00 3.01
5017 6222 3.133542 CCACTCAGGATGCTGTGATTCTA 59.866 47.826 21.17 0.00 40.75 2.10
5030 6235 0.689412 TGGTGTGTGTCCACTCAGGA 60.689 55.000 2.65 0.00 46.75 3.86
5111 6316 4.173971 GACGGTACAAATCGGCGT 57.826 55.556 6.85 0.00 0.00 5.68
5160 6365 1.048724 TTGTGCCTAGGGATCCTCCG 61.049 60.000 12.58 0.00 37.43 4.63
5222 6427 2.038557 ACACAAGCTCGTTATGGTCCTT 59.961 45.455 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.