AutoCloner

Multiple sequence alignment - TraesCS1A01G101100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G101100	chr1A	100.000	3047	0	0	1	3047	97791809	97794855	0.000000e+00	5627.0
1	TraesCS1A01G101100	chr1A	89.791	764	70	6	1	759	449141790	449141030	0.000000e+00	972.0
2	TraesCS1A01G101100	chr1B	89.741	2359	162	38	743	3047	130009853	130012185	0.000000e+00	2942.0
3	TraesCS1A01G101100	chr1D	94.088	1607	80	7	803	2405	79115615	79117210	0.000000e+00	2427.0
4	TraesCS1A01G101100	chr1D	91.230	764	63	3	1	760	249021720	249020957	0.000000e+00	1037.0
5	TraesCS1A01G101100	chr1D	90.687	655	37	7	2397	3047	79118053	79118687	0.000000e+00	850.0
6	TraesCS1A01G101100	chr6A	91.732	762	58	5	1	759	72545692	72546451	0.000000e+00	1053.0
7	TraesCS1A01G101100	chr4A	91.470	762	62	3	1	759	684981059	684981820	0.000000e+00	1044.0
8	TraesCS1A01G101100	chr4A	74.295	603	131	13	1460	2056	726576664	726576080	1.830000e-57	233.0
9	TraesCS1A01G101100	chr3A	90.495	768	69	4	1	764	715533752	715534519	0.000000e+00	1011.0
10	TraesCS1A01G101100	chr3A	76.182	592	119	19	1469	2046	12117721	12117138	2.970000e-75	292.0
11	TraesCS1A01G101100	chr3A	77.350	468	84	18	1593	2046	11921265	11921724	1.080000e-64	257.0
12	TraesCS1A01G101100	chr5A	90.301	763	70	4	1	759	4620344	4621106	0.000000e+00	996.0
13	TraesCS1A01G101100	chr5A	89.570	767	72	6	1	760	663155158	663154393	0.000000e+00	966.0
14	TraesCS1A01G101100	chr5A	77.564	156	31	4	1011	1164	36826761	36826608	1.160000e-14	91.6
15	TraesCS1A01G101100	chr2A	90.052	764	69	7	1	760	58534618	58535378	0.000000e+00	983.0
16	TraesCS1A01G101100	chr7A	89.895	762	75	2	1	760	92744008	92743247	0.000000e+00	979.0
17	TraesCS1A01G101100	chr7A	74.141	611	134	12	1454	2058	10831308	10831900	6.570000e-57	231.0
18	TraesCS1A01G101100	chr7A	74.449	544	113	16	1460	1996	10380944	10381468	8.560000e-51	211.0
19	TraesCS1A01G101100	chr7D	73.884	605	134	11	1460	2058	11261491	11262077	1.420000e-53	220.0
20	TraesCS1A01G101100	chr2D	74.451	501	118	9	1560	2056	469226535	469226041	1.110000e-49	207.0
21	TraesCS1A01G101100	chr7B	73.185	496	114	14	1520	2004	691458744	691459231	8.740000e-36	161.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G101100	chr1A	97791809	97794855	3046	False	5627.0	5627	100.0000	1	3047	1	chr1A.!!$F1	3046
1	TraesCS1A01G101100	chr1A	449141030	449141790	760	True	972.0	972	89.7910	1	759	1	chr1A.!!$R1	758
2	TraesCS1A01G101100	chr1B	130009853	130012185	2332	False	2942.0	2942	89.7410	743	3047	1	chr1B.!!$F1	2304
3	TraesCS1A01G101100	chr1D	79115615	79118687	3072	False	1638.5	2427	92.3875	803	3047	2	chr1D.!!$F1	2244
4	TraesCS1A01G101100	chr1D	249020957	249021720	763	True	1037.0	1037	91.2300	1	760	1	chr1D.!!$R1	759
5	TraesCS1A01G101100	chr6A	72545692	72546451	759	False	1053.0	1053	91.7320	1	759	1	chr6A.!!$F1	758
6	TraesCS1A01G101100	chr4A	684981059	684981820	761	False	1044.0	1044	91.4700	1	759	1	chr4A.!!$F1	758
7	TraesCS1A01G101100	chr4A	726576080	726576664	584	True	233.0	233	74.2950	1460	2056	1	chr4A.!!$R1	596
8	TraesCS1A01G101100	chr3A	715533752	715534519	767	False	1011.0	1011	90.4950	1	764	1	chr3A.!!$F2	763
9	TraesCS1A01G101100	chr3A	12117138	12117721	583	True	292.0	292	76.1820	1469	2046	1	chr3A.!!$R1	577
10	TraesCS1A01G101100	chr5A	4620344	4621106	762	False	996.0	996	90.3010	1	759	1	chr5A.!!$F1	758
11	TraesCS1A01G101100	chr5A	663154393	663155158	765	True	966.0	966	89.5700	1	760	1	chr5A.!!$R2	759
12	TraesCS1A01G101100	chr2A	58534618	58535378	760	False	983.0	983	90.0520	1	760	1	chr2A.!!$F1	759
13	TraesCS1A01G101100	chr7A	92743247	92744008	761	True	979.0	979	89.8950	1	760	1	chr7A.!!$R1	759
14	TraesCS1A01G101100	chr7A	10831308	10831900	592	False	231.0	231	74.1410	1454	2058	1	chr7A.!!$F2	604
15	TraesCS1A01G101100	chr7A	10380944	10381468	524	False	211.0	211	74.4490	1460	1996	1	chr7A.!!$F1	536
16	TraesCS1A01G101100	chr7D	11261491	11262077	586	False	220.0	220	73.8840	1460	2058	1	chr7D.!!$F1	598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
778	795	0.104304	ATATTCGGCGACCTCCACAC	59.896	55.0	10.16	0.0	0.0	3.82	F
1115	1162	0.036010	AACTTCATCCCGTCTGCCAG	60.036	55.0	0.00	0.0	0.0	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1961	2014	0.181350	GAGGTGAGCATACCCTTGGG	59.819	60.000	3.77	3.77	41.83	4.12	R
2968	3910	1.728971	CAGCCTACTTCAGTTCTTGCG	59.271	52.381	0.00	0.00	0.00	4.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
214	218	1.078848	GCTTGGTCCGCTGATGAGT	60.079	57.895	0.00	0.00	0.00	3.41
381	385	2.046892	TTCCTCTGCTTCGGCTGC	60.047	61.111	0.00	0.00	42.37	5.25
441	445	1.820519	ACGTACTTCTTCGGTGGCATA	59.179	47.619	0.00	0.00	0.00	3.14
557	566	1.935194	CGCTCGACTCGCTGATAGA	59.065	57.895	0.00	0.00	0.00	1.98
648	659	2.594592	GCCGGCACCAGTTTCAGT	60.595	61.111	24.80	0.00	0.00	3.41
654	665	1.202698	GGCACCAGTTTCAGTCTGAGT	60.203	52.381	2.12	0.00	35.20	3.41
657	668	2.034685	CACCAGTTTCAGTCTGAGTCGA	59.965	50.000	2.12	0.00	35.20	4.20
718	730	2.871828	CGCCGGCGTGGTAAAAAT	59.128	55.556	39.71	0.00	41.21	1.82
719	731	1.979831	GCGCCGGCGTGGTAAAAATA	61.980	55.000	45.02	0.00	41.21	1.40
725	737	3.430651	CCGGCGTGGTAAAAATACCTAGA	60.431	47.826	6.01	0.00	40.70	2.43
760	773	1.670590	GCGGCTGGAGATGCTCTAT	59.329	57.895	0.00	0.00	0.00	1.98
761	774	0.891373	GCGGCTGGAGATGCTCTATA	59.109	55.000	0.00	0.00	0.00	1.31
778	795	0.104304	ATATTCGGCGACCTCCACAC	59.896	55.000	10.16	0.00	0.00	3.82
842	883	1.337118	GCGAGAATCATCCTCCTCCT	58.663	55.000	0.00	0.00	33.17	3.69
867	908	1.383248	TCCCTCTCCCCAGCTTAGC	60.383	63.158	0.00	0.00	0.00	3.09
868	909	2.447714	CCCTCTCCCCAGCTTAGCC	61.448	68.421	0.00	0.00	0.00	3.93
869	910	2.801631	CCTCTCCCCAGCTTAGCCG	61.802	68.421	0.00	0.00	0.00	5.52
870	911	3.453070	CTCTCCCCAGCTTAGCCGC	62.453	68.421	0.00	0.00	0.00	6.53
871	912	4.899239	CTCCCCAGCTTAGCCGCG	62.899	72.222	0.00	0.00	34.40	6.46
999	1046	0.685458	CCAATTTCAGGAGGCCCAGG	60.685	60.000	0.00	0.00	33.88	4.45
1028	1075	2.400798	GTCGATGTGCACCGCATG	59.599	61.111	15.69	0.00	41.91	4.06
1115	1162	0.036010	AACTTCATCCCGTCTGCCAG	60.036	55.000	0.00	0.00	0.00	4.85
1149	1196	1.442526	GCTACCTCTGGCGCGTACTA	61.443	60.000	8.43	0.00	0.00	1.82
1154	1201	1.607628	CCTCTGGCGCGTACTATACTT	59.392	52.381	8.43	0.00	0.00	2.24
1161	1208	1.069636	CGCGTACTATACTTCCCCGAC	60.070	57.143	0.00	0.00	0.00	4.79
1194	1241	1.595382	GGAGAATGGGGATCACGCG	60.595	63.158	3.53	3.53	34.15	6.01
1212	1259	0.731855	CGTCCGTTTTCCTCGACCTC	60.732	60.000	0.00	0.00	0.00	3.85
1312	1359	2.035155	TCTCCCAGAAGACGCCGA	59.965	61.111	0.00	0.00	0.00	5.54
1313	1360	1.379977	TCTCCCAGAAGACGCCGAT	60.380	57.895	0.00	0.00	0.00	4.18
1314	1361	0.106868	TCTCCCAGAAGACGCCGATA	60.107	55.000	0.00	0.00	0.00	2.92
1315	1362	0.744874	CTCCCAGAAGACGCCGATAA	59.255	55.000	0.00	0.00	0.00	1.75
1329	1376	3.602062	CGCCGATAATGTTCAACAACAAC	59.398	43.478	0.00	0.00	45.78	3.32
1332	1379	5.079406	CCGATAATGTTCAACAACAACGAG	58.921	41.667	0.00	0.00	45.78	4.18
1345	1392	4.219944	ACAACAACGAGCATAGGAACTCTA	59.780	41.667	0.00	0.00	41.75	2.43
1430	1477	5.471456	GTGATGTCACAGTTCTGAAGGAATT	59.529	40.000	8.22	0.00	45.75	2.17
1448	1495	1.507140	TTCAAGGTGACCCTGACTGT	58.493	50.000	1.62	0.00	41.56	3.55
1458	1505	0.474184	CCCTGACTGTGACCACCTTT	59.526	55.000	0.00	0.00	0.00	3.11
1473	1520	0.890683	CCTTTGACATCCAAGTGCCC	59.109	55.000	0.00	0.00	35.94	5.36
1506	1553	2.174424	GGGGGAGCATCTCAGAGAATTT	59.826	50.000	3.63	0.00	37.29	1.82
1548	1595	4.776743	CAGATGTCGTTTTTGAGGTTGAG	58.223	43.478	0.00	0.00	0.00	3.02
1574	1621	2.749621	AGGTTTTTCCTGCGCATAAGAG	59.250	45.455	12.24	0.00	46.19	2.85
1656	1709	2.095466	GGCAAAGCAACGCATAACAGTA	60.095	45.455	0.00	0.00	0.00	2.74
1701	1754	1.609208	AGGCGTTGCTTCACTTCATT	58.391	45.000	0.00	0.00	0.00	2.57
1853	1906	6.732531	TTGCAATAGTCTTGATGTTGAGAG	57.267	37.500	0.00	0.00	0.00	3.20
1932	1985	4.216257	GCTTGCCTTGAGTTTATCACTTCA	59.784	41.667	0.00	0.00	37.77	3.02
1961	2014	3.635373	AGAATGGATGATGTCATGGCAAC	59.365	43.478	3.01	1.21	36.57	4.17
2128	2183	4.894784	TCGTAAGATGAAGTTGGCTTCTT	58.105	39.130	8.53	2.82	46.02	2.52
2170	2225	1.633945	TCTTTTGGAGAAGGGTAGGCC	59.366	52.381	0.00	0.00	0.00	5.19
2215	2300	4.040217	AGGCTCCTCTTGCTATATCTTGTG	59.960	45.833	0.00	0.00	0.00	3.33
2228	2313	6.088749	GCTATATCTTGTGTGTGATGACGATC	59.911	42.308	0.00	0.00	0.00	3.69
2285	2370	2.222819	GCTAGTGTTCTCGAAAATGCCG	60.223	50.000	0.00	0.00	0.00	5.69
2475	3412	5.863397	GCAAGTTATTGAGCAGCACAATTAA	59.137	36.000	21.25	11.62	38.83	1.40
2500	3437	5.865013	TGCAGTATTTTGAGATTGCATTGTG	59.135	36.000	0.00	0.00	36.71	3.33
2502	3439	6.097356	CAGTATTTTGAGATTGCATTGTGCT	58.903	36.000	3.41	0.00	45.31	4.40
2512	3449	7.094248	TGAGATTGCATTGTGCTAACTATGTTT	60.094	33.333	3.41	0.00	45.31	2.83
2515	3452	8.687824	ATTGCATTGTGCTAACTATGTTTAAC	57.312	30.769	3.41	0.00	45.31	2.01
2601	3541	7.542824	GGATTCACTGTAGTCTGTAGAGAAAAC	59.457	40.741	0.00	0.00	0.00	2.43
2608	3548	4.911390	AGTCTGTAGAGAAAACCCCAATG	58.089	43.478	0.00	0.00	0.00	2.82
2615	3555	8.485578	TGTAGAGAAAACCCCAATGTTTTAAT	57.514	30.769	2.21	0.00	45.72	1.40
2942	3884	3.006644	TGGCATGATGTAGAGATCTCTGC	59.993	47.826	31.46	29.77	40.71	4.26
2968	3910	4.729227	TTTGTTCCAACTCCAAAGGTTC	57.271	40.909	0.00	0.00	0.00	3.62
2989	3931	1.466558	GCAAGAACTGAAGTAGGCTGC	59.533	52.381	0.00	0.00	0.00	5.25
2993	3935	2.370189	AGAACTGAAGTAGGCTGCACTT	59.630	45.455	5.14	3.63	38.92	3.16
2994	3936	2.938956	ACTGAAGTAGGCTGCACTTT	57.061	45.000	5.14	0.00	36.38	2.66
2997	3939	3.565902	ACTGAAGTAGGCTGCACTTTTTC	59.434	43.478	5.14	0.01	36.38	2.29
2999	3941	4.207165	TGAAGTAGGCTGCACTTTTTCTT	58.793	39.130	5.14	0.00	36.38	2.52
3000	3942	4.644685	TGAAGTAGGCTGCACTTTTTCTTT	59.355	37.500	5.14	0.00	36.38	2.52
3001	3943	5.825679	TGAAGTAGGCTGCACTTTTTCTTTA	59.174	36.000	5.14	0.00	36.38	1.85
3003	3945	6.259550	AGTAGGCTGCACTTTTTCTTTATG	57.740	37.500	5.14	0.00	0.00	1.90
3005	3947	6.940298	AGTAGGCTGCACTTTTTCTTTATGTA	59.060	34.615	5.14	0.00	0.00	2.29
3006	3948	6.259550	AGGCTGCACTTTTTCTTTATGTAG	57.740	37.500	0.50	0.00	0.00	2.74
3007	3949	4.859245	GGCTGCACTTTTTCTTTATGTAGC	59.141	41.667	0.50	4.32	45.03	3.58
3008	3950	5.460646	GCTGCACTTTTTCTTTATGTAGCA	58.539	37.500	7.60	0.00	45.08	3.49
3009	3951	5.920273	GCTGCACTTTTTCTTTATGTAGCAA	59.080	36.000	7.60	0.00	45.08	3.91
3029	3975	1.950828	AGCAATGCTCCTCATTCTCG	58.049	50.000	0.00	0.00	43.21	4.04

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
207	211	2.125391	GCTGCGGCTGACTCATCA	60.125	61.111	11.21	0.00	35.22	3.07
237	241	2.040544	CAAGAAGGCCCGCGACAAT	61.041	57.895	8.23	0.00	0.00	2.71
283	287	4.148825	GCGACGGGAGGCTGTCAT	62.149	66.667	0.00	0.00	34.78	3.06
512	520	0.724785	CCGCCGTTTCTTTCGCTTTC	60.725	55.000	0.00	0.00	0.00	2.62
551	560	3.521605	CGTGGGTCCGCTCTATCA	58.478	61.111	0.00	0.00	0.00	2.15
605	616	4.733542	GCCAAACCCAGCGCCCTA	62.734	66.667	2.29	0.00	0.00	3.53
613	624	3.909651	GGACCCAGGCCAAACCCA	61.910	66.667	5.01	0.00	40.58	4.51
666	677	3.000727	CCAGTCGCGTCCTTAGAATTTT	58.999	45.455	5.77	0.00	0.00	1.82
668	679	1.134788	CCCAGTCGCGTCCTTAGAATT	60.135	52.381	5.77	0.00	0.00	2.17
669	680	0.460311	CCCAGTCGCGTCCTTAGAAT	59.540	55.000	5.77	0.00	0.00	2.40
712	724	6.397217	ACAGGCCCTTTCTAGGTATTTTTA	57.603	37.500	0.00	0.00	40.19	1.52
718	730	1.913419	CCAACAGGCCCTTTCTAGGTA	59.087	52.381	0.00	0.00	40.19	3.08
719	731	0.698818	CCAACAGGCCCTTTCTAGGT	59.301	55.000	0.00	0.00	40.19	3.08
760	773	1.514087	GTGTGGAGGTCGCCGAATA	59.486	57.895	0.00	0.00	0.00	1.75
761	774	2.264794	GTGTGGAGGTCGCCGAAT	59.735	61.111	0.00	0.00	0.00	3.34
829	870	2.638855	GAGCAATGAGGAGGAGGATGAT	59.361	50.000	0.00	0.00	0.00	2.45
842	883	0.984961	CTGGGGAGAGGGAGCAATGA	60.985	60.000	0.00	0.00	0.00	2.57
953	1000	0.317854	GCGGAGAAATTAATGGCGGC	60.318	55.000	0.00	0.00	0.00	6.53
954	1001	0.041312	CGCGGAGAAATTAATGGCGG	60.041	55.000	0.00	0.00	38.62	6.13
955	1002	0.657368	GCGCGGAGAAATTAATGGCG	60.657	55.000	8.83	0.00	44.41	5.69
956	1003	0.380378	TGCGCGGAGAAATTAATGGC	59.620	50.000	8.83	0.00	0.00	4.40
957	1004	2.719798	CTTGCGCGGAGAAATTAATGG	58.280	47.619	8.83	0.00	0.00	3.16
958	1005	2.111756	GCTTGCGCGGAGAAATTAATG	58.888	47.619	8.83	0.00	0.00	1.90
999	1046	1.658717	CATCGACGCCGTCCTCATC	60.659	63.158	12.26	0.00	37.05	2.92
1115	1162	3.768185	TAGCCGCCGATGTCGAAGC	62.768	63.158	3.62	3.86	43.02	3.86
1161	1208	2.123854	TCCATCTCCGTCTCCCCG	60.124	66.667	0.00	0.00	0.00	5.73
1169	1216	1.277557	GATCCCCATTCTCCATCTCCG	59.722	57.143	0.00	0.00	0.00	4.63
1194	1241	0.731855	CGAGGTCGAGGAAAACGGAC	60.732	60.000	0.00	0.00	43.02	4.79
1312	1359	5.431420	TGCTCGTTGTTGTTGAACATTAT	57.569	34.783	0.00	0.00	41.77	1.28
1313	1360	4.884458	TGCTCGTTGTTGTTGAACATTA	57.116	36.364	0.00	0.00	41.77	1.90
1314	1361	3.773860	TGCTCGTTGTTGTTGAACATT	57.226	38.095	0.00	0.00	41.77	2.71
1315	1362	3.988379	ATGCTCGTTGTTGTTGAACAT	57.012	38.095	0.00	0.00	41.77	2.71
1345	1392	1.741770	GCAAGAAGTCGTCGCCCAT	60.742	57.895	0.00	0.00	0.00	4.00
1407	1454	4.687901	TTCCTTCAGAACTGTGACATCA	57.312	40.909	1.73	0.00	0.00	3.07
1448	1495	2.174639	ACTTGGATGTCAAAGGTGGTCA	59.825	45.455	2.44	0.00	34.56	4.02
1458	1505	2.763215	GGGGGCACTTGGATGTCA	59.237	61.111	0.00	0.00	0.00	3.58
1506	1553	0.568192	CCCCCTCCCCATTCTCTAGA	59.432	60.000	0.00	0.00	0.00	2.43
1701	1754	4.574892	TCGAAGGCAATGAATCTGTGTAA	58.425	39.130	0.00	0.00	0.00	2.41
1731	1784	1.883678	TGCCCTCATCTCCATCAAGA	58.116	50.000	0.00	0.00	0.00	3.02
1836	1889	5.536538	AGTGACACTCTCAACATCAAGACTA	59.463	40.000	1.07	0.00	0.00	2.59
1853	1906	1.734465	GAGCCAATGTAGCAGTGACAC	59.266	52.381	0.00	0.00	30.53	3.67
1932	1985	3.903714	TGACATCATCCATTCTATCCGGT	59.096	43.478	0.00	0.00	0.00	5.28
1961	2014	0.181350	GAGGTGAGCATACCCTTGGG	59.819	60.000	3.77	3.77	41.83	4.12
2085	2138	5.178809	ACGAGGTTATGCTCAACTAAACAAC	59.821	40.000	0.00	0.00	0.00	3.32
2135	2190	7.461749	TCTCCAAAAGATCACTGGAAACTAAT	58.538	34.615	10.57	0.00	38.75	1.73
2136	2191	6.837312	TCTCCAAAAGATCACTGGAAACTAA	58.163	36.000	10.57	0.00	38.75	2.24
2170	2225	5.808540	CCTCCATCACATGCATTTTACAAAG	59.191	40.000	0.00	0.00	0.00	2.77
2215	2300	2.106750	ATCGTCGATCGTCATCACAC	57.893	50.000	15.94	2.78	40.80	3.82
2285	2370	1.873698	TTGTTTAGCCAGACGGTCAC	58.126	50.000	11.27	0.00	33.28	3.67
2500	3437	7.488150	GCCAATCCAAAGTTAAACATAGTTAGC	59.512	37.037	0.00	0.00	0.00	3.09
2502	3439	8.301002	GTGCCAATCCAAAGTTAAACATAGTTA	58.699	33.333	0.00	0.00	0.00	2.24
2512	3449	2.950781	TGGTGTGCCAATCCAAAGTTA	58.049	42.857	0.00	0.00	42.83	2.24
2601	3541	8.299990	TGTATAGTTGGATTAAAACATTGGGG	57.700	34.615	0.00	0.00	0.00	4.96
2615	3555	6.614694	TTGGAGCTAAACTGTATAGTTGGA	57.385	37.500	5.55	0.00	46.14	3.53
2853	3795	7.722363	TCAGATTCACAAAACACTAGACACTA	58.278	34.615	0.00	0.00	0.00	2.74
2854	3796	6.582636	TCAGATTCACAAAACACTAGACACT	58.417	36.000	0.00	0.00	0.00	3.55
2855	3797	6.844696	TCAGATTCACAAAACACTAGACAC	57.155	37.500	0.00	0.00	0.00	3.67
2856	3798	7.933577	AGATTCAGATTCACAAAACACTAGACA	59.066	33.333	0.00	0.00	0.00	3.41
2857	3799	8.226448	CAGATTCAGATTCACAAAACACTAGAC	58.774	37.037	0.00	0.00	0.00	2.59
2858	3800	7.388776	CCAGATTCAGATTCACAAAACACTAGA	59.611	37.037	0.00	0.00	0.00	2.43
2859	3801	7.361542	CCCAGATTCAGATTCACAAAACACTAG	60.362	40.741	0.00	0.00	0.00	2.57
2968	3910	1.728971	CAGCCTACTTCAGTTCTTGCG	59.271	52.381	0.00	0.00	0.00	4.85
2982	3924	6.128007	GCTACATAAAGAAAAAGTGCAGCCTA	60.128	38.462	0.00	0.00	0.00	3.93
2989	3931	7.928908	TGCTTTGCTACATAAAGAAAAAGTG	57.071	32.000	0.00	0.00	37.33	3.16
2993	3935	7.350110	GCATTGCTTTGCTACATAAAGAAAA	57.650	32.000	0.16	0.00	36.53	2.29
2994	3936	6.949578	GCATTGCTTTGCTACATAAAGAAA	57.050	33.333	0.16	0.00	37.16	2.52
3006	3948	2.165845	AGAATGAGGAGCATTGCTTTGC	59.834	45.455	13.35	5.70	46.90	3.68
3007	3949	3.487042	CGAGAATGAGGAGCATTGCTTTG	60.487	47.826	13.35	0.00	46.90	2.77
3008	3950	2.681848	CGAGAATGAGGAGCATTGCTTT	59.318	45.455	13.35	2.16	46.90	3.51
3009	3951	2.286872	CGAGAATGAGGAGCATTGCTT	58.713	47.619	13.35	0.00	46.90	3.91

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.