Multiple sequence alignment - TraesCS1A01G101000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G101000 chr1A 100.000 4671 0 0 1 4671 97647738 97643068 0.000000e+00 8626.0
1 TraesCS1A01G101000 chr1A 98.099 2314 42 2 2360 4671 244509207 244506894 0.000000e+00 4028.0
2 TraesCS1A01G101000 chr1A 98.013 2315 43 3 2360 4671 587386444 587384130 0.000000e+00 4017.0
3 TraesCS1A01G101000 chr1A 95.724 1988 82 3 376 2362 244511227 244509242 0.000000e+00 3197.0
4 TraesCS1A01G101000 chr1A 95.557 1958 86 1 405 2362 587388435 587386479 0.000000e+00 3133.0
5 TraesCS1A01G101000 chr1A 89.491 609 39 2 1249 1832 452018765 452019373 0.000000e+00 747.0
6 TraesCS1A01G101000 chr5A 98.487 2314 30 3 2360 4671 623554673 623552363 0.000000e+00 4074.0
7 TraesCS1A01G101000 chr5A 98.099 2314 39 5 2360 4671 78264798 78262488 0.000000e+00 4024.0
8 TraesCS1A01G101000 chr5A 97.926 2314 45 3 2360 4671 78323630 78321318 0.000000e+00 4004.0
9 TraesCS1A01G101000 chr5A 95.329 1991 91 2 372 2362 78266821 78264833 0.000000e+00 3160.0
10 TraesCS1A01G101000 chr5A 95.570 1964 68 2 395 2358 623556655 623554711 0.000000e+00 3127.0
11 TraesCS1A01G101000 chr5A 94.064 1988 88 5 375 2362 78325622 78323665 0.000000e+00 2990.0
12 TraesCS1A01G101000 chr5A 95.280 1377 56 4 383 1751 426932601 426931226 0.000000e+00 2174.0
13 TraesCS1A01G101000 chr2B 98.055 2314 43 2 2360 4671 596911658 596909345 0.000000e+00 4023.0
14 TraesCS1A01G101000 chr2B 94.945 1998 82 6 383 2362 596913689 596911693 0.000000e+00 3112.0
15 TraesCS1A01G101000 chr2B 89.575 729 67 8 406 1133 103893468 103894188 0.000000e+00 917.0
16 TraesCS1A01G101000 chr6B 91.326 1395 79 13 2637 4009 270877251 270878625 0.000000e+00 1868.0
17 TraesCS1A01G101000 chr6B 92.229 489 28 5 1876 2358 270876417 270876901 0.000000e+00 684.0
18 TraesCS1A01G101000 chr6B 96.057 279 11 0 2360 2638 270876940 270877218 5.510000e-124 455.0
19 TraesCS1A01G101000 chr6B 86.863 373 33 7 4136 4508 270878866 270879222 2.020000e-108 403.0
20 TraesCS1A01G101000 chr6B 91.026 78 7 0 4413 4490 270879225 270879302 6.390000e-19 106.0
21 TraesCS1A01G101000 chr6B 92.000 50 3 1 3970 4019 120677305 120677353 8.390000e-08 69.4
22 TraesCS1A01G101000 chr3D 90.973 853 71 5 396 1248 281331189 281330343 0.000000e+00 1144.0
23 TraesCS1A01G101000 chr4A 90.427 867 77 5 383 1248 599905004 599904143 0.000000e+00 1136.0
24 TraesCS1A01G101000 chr2A 87.141 941 87 13 3091 4015 456212800 456213722 0.000000e+00 1037.0
25 TraesCS1A01G101000 chr3A 86.200 942 96 13 3091 4015 670100950 670100026 0.000000e+00 989.0
26 TraesCS1A01G101000 chr1B 89.194 620 41 3 1249 1842 473822496 473823115 0.000000e+00 750.0
27 TraesCS1A01G101000 chr1D 88.907 613 43 2 1249 1836 351245770 351246382 0.000000e+00 732.0
28 TraesCS1A01G101000 chr1D 86.310 336 43 3 38 372 86693999 86693666 3.440000e-96 363.0
29 TraesCS1A01G101000 chr5B 93.402 485 29 2 1876 2358 127701892 127701409 0.000000e+00 715.0
30 TraesCS1A01G101000 chr5B 95.539 269 11 1 2370 2638 127701360 127701093 3.340000e-116 429.0
31 TraesCS1A01G101000 chr5B 91.071 56 5 0 2633 2688 127701064 127701009 5.010000e-10 76.8
32 TraesCS1A01G101000 chr5B 93.750 48 3 0 3973 4020 635464472 635464519 6.480000e-09 73.1
33 TraesCS1A01G101000 chrUn 91.892 370 21 7 4146 4513 466505782 466505420 4.170000e-140 508.0
34 TraesCS1A01G101000 chrUn 90.234 256 23 1 1876 2129 8502817 8503072 2.690000e-87 333.0
35 TraesCS1A01G101000 chr7B 88.496 339 33 6 38 372 491770017 491770353 5.630000e-109 405.0
36 TraesCS1A01G101000 chr7B 100.000 28 0 0 16 43 491769834 491769861 8.000000e-03 52.8
37 TraesCS1A01G101000 chr2D 88.060 335 38 2 40 372 442666520 442666854 3.390000e-106 396.0
38 TraesCS1A01G101000 chr2D 87.202 336 41 2 38 372 436257681 436257347 9.480000e-102 381.0
39 TraesCS1A01G101000 chr2D 85.799 338 44 4 38 372 514673411 514673075 5.750000e-94 355.0
40 TraesCS1A01G101000 chr7A 87.202 336 41 2 38 372 90856752 90856418 9.480000e-102 381.0
41 TraesCS1A01G101000 chr4D 86.377 345 43 4 29 372 148655669 148655328 1.590000e-99 374.0
42 TraesCS1A01G101000 chr6D 85.757 337 46 2 38 372 199282481 199282817 5.750000e-94 355.0
43 TraesCS1A01G101000 chr5D 85.460 337 47 2 38 372 292220309 292219973 2.670000e-92 350.0
44 TraesCS1A01G101000 chr5D 87.500 256 25 6 2104 2358 382914210 382913961 5.910000e-74 289.0
45 TraesCS1A01G101000 chr5D 90.780 141 11 2 2375 2513 382913885 382913745 2.220000e-43 187.0
46 TraesCS1A01G101000 chr7D 93.750 48 1 2 3972 4019 376710986 376710941 2.330000e-08 71.3
47 TraesCS1A01G101000 chr7D 100.000 28 0 0 16 43 468226884 468226911 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G101000 chr1A 97643068 97647738 4670 True 8626.000000 8626 100.000000 1 4671 1 chr1A.!!$R1 4670
1 TraesCS1A01G101000 chr1A 244506894 244511227 4333 True 3612.500000 4028 96.911500 376 4671 2 chr1A.!!$R2 4295
2 TraesCS1A01G101000 chr1A 587384130 587388435 4305 True 3575.000000 4017 96.785000 405 4671 2 chr1A.!!$R3 4266
3 TraesCS1A01G101000 chr1A 452018765 452019373 608 False 747.000000 747 89.491000 1249 1832 1 chr1A.!!$F1 583
4 TraesCS1A01G101000 chr5A 623552363 623556655 4292 True 3600.500000 4074 97.028500 395 4671 2 chr5A.!!$R4 4276
5 TraesCS1A01G101000 chr5A 78262488 78266821 4333 True 3592.000000 4024 96.714000 372 4671 2 chr5A.!!$R2 4299
6 TraesCS1A01G101000 chr5A 78321318 78325622 4304 True 3497.000000 4004 95.995000 375 4671 2 chr5A.!!$R3 4296
7 TraesCS1A01G101000 chr5A 426931226 426932601 1375 True 2174.000000 2174 95.280000 383 1751 1 chr5A.!!$R1 1368
8 TraesCS1A01G101000 chr2B 596909345 596913689 4344 True 3567.500000 4023 96.500000 383 4671 2 chr2B.!!$R1 4288
9 TraesCS1A01G101000 chr2B 103893468 103894188 720 False 917.000000 917 89.575000 406 1133 1 chr2B.!!$F1 727
10 TraesCS1A01G101000 chr6B 270876417 270879302 2885 False 703.200000 1868 91.500200 1876 4508 5 chr6B.!!$F2 2632
11 TraesCS1A01G101000 chr3D 281330343 281331189 846 True 1144.000000 1144 90.973000 396 1248 1 chr3D.!!$R1 852
12 TraesCS1A01G101000 chr4A 599904143 599905004 861 True 1136.000000 1136 90.427000 383 1248 1 chr4A.!!$R1 865
13 TraesCS1A01G101000 chr2A 456212800 456213722 922 False 1037.000000 1037 87.141000 3091 4015 1 chr2A.!!$F1 924
14 TraesCS1A01G101000 chr3A 670100026 670100950 924 True 989.000000 989 86.200000 3091 4015 1 chr3A.!!$R1 924
15 TraesCS1A01G101000 chr1B 473822496 473823115 619 False 750.000000 750 89.194000 1249 1842 1 chr1B.!!$F1 593
16 TraesCS1A01G101000 chr1D 351245770 351246382 612 False 732.000000 732 88.907000 1249 1836 1 chr1D.!!$F1 587
17 TraesCS1A01G101000 chr5B 127701009 127701892 883 True 406.933333 715 93.337333 1876 2688 3 chr5B.!!$R1 812
18 TraesCS1A01G101000 chr7B 491769834 491770353 519 False 228.900000 405 94.248000 16 372 2 chr7B.!!$F1 356

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
273 274 0.250553 TGGGTCCAATGTCGGTTGAC 60.251 55.000 0.00 0.00 45.71 3.18 F
478 479 0.673644 AGGAAATCAACCCGCAGTCG 60.674 55.000 0.00 0.00 0.00 4.18 F
1243 1270 0.179029 CGTGTGTTCCCAACTCCCTT 60.179 55.000 0.00 0.00 0.00 3.95 F
1261 1288 1.063027 CTTGGTGCGTGCTCATGTATG 59.937 52.381 0.00 0.00 0.00 2.39 F
1517 1545 1.386533 CAGATTCTGGCCAGCGATTT 58.613 50.000 28.91 15.84 0.00 2.17 F
2640 2786 1.548719 CCGTGGTGAGTGAAGTATGGA 59.451 52.381 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1243 1270 0.036483 ACATACATGAGCACGCACCA 60.036 50.000 0.00 0.0 0.00 4.17 R
2014 2084 1.063912 TGACAAGAGTTGCAAAGCACG 59.936 47.619 0.00 0.0 38.71 5.34 R
3213 3360 3.440173 TCACAAAATTGGCTCGGAAGATC 59.560 43.478 0.00 0.0 40.84 2.75 R
3414 3572 4.217550 GCTGTTGCAGAGTTAAATGGGTTA 59.782 41.667 0.00 0.0 39.41 2.85 R
3483 3642 7.707035 GTGAACCACAATAACCAAACAACAATA 59.293 33.333 0.00 0.0 34.08 1.90 R
4470 4825 0.674581 ACCGTCGGTACTGTGATCGA 60.675 55.000 17.19 0.0 32.11 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.970691 ATATTTCTGTTGTTGATTACTTGCAC 57.029 30.769 0.00 0.00 0.00 4.57
44 45 5.826601 TTCTGTTGTTGATTACTTGCACA 57.173 34.783 0.00 0.00 0.00 4.57
45 46 5.168526 TCTGTTGTTGATTACTTGCACAC 57.831 39.130 0.00 0.00 0.00 3.82
48 49 5.900425 TGTTGTTGATTACTTGCACACAAT 58.100 33.333 0.00 0.00 34.61 2.71
49 50 6.336566 TGTTGTTGATTACTTGCACACAATT 58.663 32.000 0.00 0.00 34.61 2.32
50 51 6.815641 TGTTGTTGATTACTTGCACACAATTT 59.184 30.769 0.00 0.00 34.61 1.82
51 52 7.976175 TGTTGTTGATTACTTGCACACAATTTA 59.024 29.630 0.00 0.00 34.61 1.40
52 53 8.977505 GTTGTTGATTACTTGCACACAATTTAT 58.022 29.630 0.00 0.00 34.61 1.40
53 54 8.741101 TGTTGATTACTTGCACACAATTTATC 57.259 30.769 0.00 0.00 34.61 1.75
55 56 9.065871 GTTGATTACTTGCACACAATTTATCTC 57.934 33.333 0.00 0.00 34.61 2.75
59 60 8.856153 TTACTTGCACACAATTTATCTCCTTA 57.144 30.769 0.00 0.00 34.61 2.69
60 61 7.944729 ACTTGCACACAATTTATCTCCTTAT 57.055 32.000 0.00 0.00 34.61 1.73
61 62 8.353423 ACTTGCACACAATTTATCTCCTTATT 57.647 30.769 0.00 0.00 34.61 1.40
62 63 8.246180 ACTTGCACACAATTTATCTCCTTATTG 58.754 33.333 0.00 0.00 34.61 1.90
63 64 7.936496 TGCACACAATTTATCTCCTTATTGA 57.064 32.000 0.00 0.00 33.39 2.57
64 65 8.523915 TGCACACAATTTATCTCCTTATTGAT 57.476 30.769 0.00 0.00 33.39 2.57
65 66 8.970020 TGCACACAATTTATCTCCTTATTGATT 58.030 29.630 0.00 0.00 33.39 2.57
66 67 9.241317 GCACACAATTTATCTCCTTATTGATTG 57.759 33.333 0.00 0.00 33.39 2.67
67 68 9.740239 CACACAATTTATCTCCTTATTGATTGG 57.260 33.333 0.00 0.00 33.39 3.16
68 69 9.699410 ACACAATTTATCTCCTTATTGATTGGA 57.301 29.630 0.00 0.00 33.39 3.53
77 78 8.687292 TCTCCTTATTGATTGGATCATTTCTG 57.313 34.615 0.00 0.00 39.39 3.02
78 79 7.230108 TCTCCTTATTGATTGGATCATTTCTGC 59.770 37.037 0.00 0.00 39.39 4.26
79 80 7.064866 TCCTTATTGATTGGATCATTTCTGCT 58.935 34.615 0.00 0.00 39.39 4.24
80 81 8.219868 TCCTTATTGATTGGATCATTTCTGCTA 58.780 33.333 0.00 0.00 39.39 3.49
81 82 9.021807 CCTTATTGATTGGATCATTTCTGCTAT 57.978 33.333 0.00 0.00 39.39 2.97
82 83 9.841880 CTTATTGATTGGATCATTTCTGCTATG 57.158 33.333 0.00 0.00 39.39 2.23
83 84 9.577222 TTATTGATTGGATCATTTCTGCTATGA 57.423 29.630 0.00 0.00 39.39 2.15
84 85 8.651589 ATTGATTGGATCATTTCTGCTATGAT 57.348 30.769 0.00 0.00 43.53 2.45
85 86 7.448748 TGATTGGATCATTTCTGCTATGATG 57.551 36.000 3.27 0.00 41.53 3.07
86 87 7.228590 TGATTGGATCATTTCTGCTATGATGA 58.771 34.615 3.27 3.36 41.53 2.92
87 88 7.390718 TGATTGGATCATTTCTGCTATGATGAG 59.609 37.037 3.27 0.00 41.53 2.90
88 89 6.183810 TGGATCATTTCTGCTATGATGAGT 57.816 37.500 3.27 0.00 41.53 3.41
89 90 5.995897 TGGATCATTTCTGCTATGATGAGTG 59.004 40.000 3.27 0.00 41.53 3.51
90 91 5.106634 GGATCATTTCTGCTATGATGAGTGC 60.107 44.000 3.27 0.00 41.53 4.40
91 92 4.773013 TCATTTCTGCTATGATGAGTGCA 58.227 39.130 0.00 0.00 0.00 4.57
92 93 5.187687 TCATTTCTGCTATGATGAGTGCAA 58.812 37.500 0.00 0.00 34.90 4.08
93 94 5.648960 TCATTTCTGCTATGATGAGTGCAAA 59.351 36.000 0.00 0.00 34.90 3.68
94 95 4.952262 TTCTGCTATGATGAGTGCAAAC 57.048 40.909 0.00 0.00 34.90 2.93
95 96 4.212143 TCTGCTATGATGAGTGCAAACT 57.788 40.909 0.00 0.00 34.90 2.66
96 97 3.937079 TCTGCTATGATGAGTGCAAACTG 59.063 43.478 0.00 0.00 34.90 3.16
97 98 3.937079 CTGCTATGATGAGTGCAAACTGA 59.063 43.478 0.00 0.00 34.90 3.41
98 99 3.937079 TGCTATGATGAGTGCAAACTGAG 59.063 43.478 0.00 0.00 32.12 3.35
99 100 3.311871 GCTATGATGAGTGCAAACTGAGG 59.688 47.826 0.00 0.00 0.00 3.86
100 101 2.189594 TGATGAGTGCAAACTGAGGG 57.810 50.000 0.00 0.00 0.00 4.30
101 102 1.699083 TGATGAGTGCAAACTGAGGGA 59.301 47.619 0.00 0.00 0.00 4.20
102 103 2.289882 TGATGAGTGCAAACTGAGGGAG 60.290 50.000 0.00 0.00 0.00 4.30
103 104 1.423584 TGAGTGCAAACTGAGGGAGA 58.576 50.000 0.00 0.00 0.00 3.71
104 105 1.070758 TGAGTGCAAACTGAGGGAGAC 59.929 52.381 0.00 0.00 0.00 3.36
105 106 1.346068 GAGTGCAAACTGAGGGAGACT 59.654 52.381 0.00 0.00 0.00 3.24
106 107 1.771255 AGTGCAAACTGAGGGAGACTT 59.229 47.619 0.00 0.00 0.00 3.01
107 108 1.876156 GTGCAAACTGAGGGAGACTTG 59.124 52.381 0.00 0.00 0.00 3.16
108 109 1.768275 TGCAAACTGAGGGAGACTTGA 59.232 47.619 0.00 0.00 0.00 3.02
109 110 2.373169 TGCAAACTGAGGGAGACTTGAT 59.627 45.455 0.00 0.00 0.00 2.57
110 111 3.181440 TGCAAACTGAGGGAGACTTGATT 60.181 43.478 0.00 0.00 0.00 2.57
111 112 4.041567 TGCAAACTGAGGGAGACTTGATTA 59.958 41.667 0.00 0.00 0.00 1.75
112 113 5.189180 GCAAACTGAGGGAGACTTGATTAT 58.811 41.667 0.00 0.00 0.00 1.28
113 114 5.295540 GCAAACTGAGGGAGACTTGATTATC 59.704 44.000 0.00 0.00 0.00 1.75
114 115 5.622346 AACTGAGGGAGACTTGATTATCC 57.378 43.478 0.00 0.00 0.00 2.59
115 116 4.624913 ACTGAGGGAGACTTGATTATCCA 58.375 43.478 0.00 0.00 33.24 3.41
116 117 5.222870 ACTGAGGGAGACTTGATTATCCAT 58.777 41.667 0.00 0.00 33.24 3.41
117 118 6.385443 ACTGAGGGAGACTTGATTATCCATA 58.615 40.000 0.00 0.00 33.24 2.74
118 119 6.268847 ACTGAGGGAGACTTGATTATCCATAC 59.731 42.308 0.00 0.00 33.24 2.39
119 120 6.385443 TGAGGGAGACTTGATTATCCATACT 58.615 40.000 0.00 0.00 33.24 2.12
120 121 6.268617 TGAGGGAGACTTGATTATCCATACTG 59.731 42.308 0.00 0.00 33.24 2.74
121 122 6.146760 AGGGAGACTTGATTATCCATACTGT 58.853 40.000 0.00 0.00 33.24 3.55
122 123 6.617371 AGGGAGACTTGATTATCCATACTGTT 59.383 38.462 0.00 0.00 33.24 3.16
123 124 6.708054 GGGAGACTTGATTATCCATACTGTTG 59.292 42.308 0.00 0.00 33.24 3.33
124 125 7.275920 GGAGACTTGATTATCCATACTGTTGT 58.724 38.462 0.00 0.00 0.00 3.32
125 126 7.225538 GGAGACTTGATTATCCATACTGTTGTG 59.774 40.741 0.00 0.00 0.00 3.33
126 127 7.851228 AGACTTGATTATCCATACTGTTGTGA 58.149 34.615 0.00 0.00 0.00 3.58
127 128 7.984050 AGACTTGATTATCCATACTGTTGTGAG 59.016 37.037 0.00 0.00 0.00 3.51
128 129 7.050377 ACTTGATTATCCATACTGTTGTGAGG 58.950 38.462 0.00 0.00 0.00 3.86
129 130 6.806668 TGATTATCCATACTGTTGTGAGGA 57.193 37.500 0.00 0.00 35.80 3.71
130 131 6.820335 TGATTATCCATACTGTTGTGAGGAG 58.180 40.000 0.00 0.00 35.17 3.69
131 132 6.384015 TGATTATCCATACTGTTGTGAGGAGT 59.616 38.462 0.00 0.00 35.17 3.85
132 133 3.961480 TCCATACTGTTGTGAGGAGTG 57.039 47.619 0.00 0.00 0.00 3.51
133 134 2.028112 TCCATACTGTTGTGAGGAGTGC 60.028 50.000 0.00 0.00 0.00 4.40
134 135 2.289631 CCATACTGTTGTGAGGAGTGCA 60.290 50.000 0.00 0.00 0.00 4.57
135 136 2.526304 TACTGTTGTGAGGAGTGCAC 57.474 50.000 9.40 9.40 36.81 4.57
136 137 0.541392 ACTGTTGTGAGGAGTGCACA 59.459 50.000 21.04 0.00 43.89 4.57
137 138 1.141657 ACTGTTGTGAGGAGTGCACAT 59.858 47.619 21.04 4.01 44.81 3.21
138 139 2.224606 CTGTTGTGAGGAGTGCACATT 58.775 47.619 21.04 3.24 44.81 2.71
139 140 3.181455 ACTGTTGTGAGGAGTGCACATTA 60.181 43.478 21.04 0.00 44.81 1.90
140 141 3.814625 TGTTGTGAGGAGTGCACATTAA 58.185 40.909 21.04 1.28 44.81 1.40
141 142 4.397420 TGTTGTGAGGAGTGCACATTAAT 58.603 39.130 21.04 0.00 44.81 1.40
142 143 4.216042 TGTTGTGAGGAGTGCACATTAATG 59.784 41.667 21.04 14.01 44.81 1.90
143 144 2.749076 TGTGAGGAGTGCACATTAATGC 59.251 45.455 21.04 4.68 46.32 3.56
154 155 5.459110 GCACATTAATGCAAACTTGATGG 57.541 39.130 15.48 0.38 45.39 3.51
155 156 4.931002 GCACATTAATGCAAACTTGATGGT 59.069 37.500 15.48 0.00 45.39 3.55
156 157 5.062558 GCACATTAATGCAAACTTGATGGTC 59.937 40.000 15.48 0.00 45.39 4.02
157 158 6.157904 CACATTAATGCAAACTTGATGGTCA 58.842 36.000 15.48 0.00 0.00 4.02
158 159 6.309494 CACATTAATGCAAACTTGATGGTCAG 59.691 38.462 15.48 0.00 0.00 3.51
159 160 3.308438 AATGCAAACTTGATGGTCAGC 57.692 42.857 0.00 0.00 0.00 4.26
160 161 1.689984 TGCAAACTTGATGGTCAGCA 58.310 45.000 0.00 0.00 0.00 4.41
161 162 2.241160 TGCAAACTTGATGGTCAGCAT 58.759 42.857 0.00 0.00 0.00 3.79
162 163 2.229543 TGCAAACTTGATGGTCAGCATC 59.770 45.455 10.07 10.07 0.00 3.91
163 164 2.229543 GCAAACTTGATGGTCAGCATCA 59.770 45.455 15.70 15.70 37.29 3.07
164 165 3.119245 GCAAACTTGATGGTCAGCATCAT 60.119 43.478 20.02 3.69 38.65 2.45
165 166 4.421058 CAAACTTGATGGTCAGCATCATG 58.579 43.478 24.09 24.09 38.65 3.07
166 167 2.651455 ACTTGATGGTCAGCATCATGG 58.349 47.619 27.32 21.07 38.65 3.66
167 168 2.025605 ACTTGATGGTCAGCATCATGGT 60.026 45.455 27.32 21.57 38.65 3.55
168 169 2.336945 TGATGGTCAGCATCATGGTC 57.663 50.000 15.70 0.00 34.50 4.02
169 170 1.560611 TGATGGTCAGCATCATGGTCA 59.439 47.619 15.70 0.00 34.50 4.02
170 171 2.173996 TGATGGTCAGCATCATGGTCAT 59.826 45.455 15.70 0.00 34.50 3.06
171 172 3.391955 TGATGGTCAGCATCATGGTCATA 59.608 43.478 15.70 0.00 34.50 2.15
172 173 4.042435 TGATGGTCAGCATCATGGTCATAT 59.958 41.667 15.70 0.00 34.50 1.78
173 174 5.248934 TGATGGTCAGCATCATGGTCATATA 59.751 40.000 15.70 0.00 34.50 0.86
174 175 5.767277 TGGTCAGCATCATGGTCATATAT 57.233 39.130 0.00 0.00 0.00 0.86
175 176 6.130692 TGGTCAGCATCATGGTCATATATT 57.869 37.500 0.00 0.00 0.00 1.28
176 177 6.175471 TGGTCAGCATCATGGTCATATATTC 58.825 40.000 0.00 0.00 0.00 1.75
177 178 6.013119 TGGTCAGCATCATGGTCATATATTCT 60.013 38.462 0.00 0.00 0.00 2.40
178 179 6.538021 GGTCAGCATCATGGTCATATATTCTC 59.462 42.308 0.00 0.00 0.00 2.87
179 180 6.538021 GTCAGCATCATGGTCATATATTCTCC 59.462 42.308 0.00 0.00 0.00 3.71
180 181 6.214005 TCAGCATCATGGTCATATATTCTCCA 59.786 38.462 0.00 3.69 0.00 3.86
181 182 7.054751 CAGCATCATGGTCATATATTCTCCAT 58.945 38.462 0.00 7.06 39.14 3.41
182 183 7.556635 CAGCATCATGGTCATATATTCTCCATT 59.443 37.037 9.19 0.00 36.86 3.16
183 184 7.774157 AGCATCATGGTCATATATTCTCCATTC 59.226 37.037 9.19 2.93 36.86 2.67
184 185 7.555195 GCATCATGGTCATATATTCTCCATTCA 59.445 37.037 9.19 2.88 36.86 2.57
185 186 8.890718 CATCATGGTCATATATTCTCCATTCAC 58.109 37.037 9.19 0.00 36.86 3.18
186 187 8.211030 TCATGGTCATATATTCTCCATTCACT 57.789 34.615 9.19 0.00 36.86 3.41
187 188 8.316946 TCATGGTCATATATTCTCCATTCACTC 58.683 37.037 9.19 0.00 36.86 3.51
188 189 7.009179 TGGTCATATATTCTCCATTCACTCC 57.991 40.000 0.00 0.00 0.00 3.85
189 190 6.558394 TGGTCATATATTCTCCATTCACTCCA 59.442 38.462 0.00 0.00 0.00 3.86
190 191 7.072328 TGGTCATATATTCTCCATTCACTCCAA 59.928 37.037 0.00 0.00 0.00 3.53
191 192 8.105829 GGTCATATATTCTCCATTCACTCCAAT 58.894 37.037 0.00 0.00 0.00 3.16
192 193 8.944029 GTCATATATTCTCCATTCACTCCAATG 58.056 37.037 0.00 0.00 34.06 2.82
196 197 3.602104 CCATTCACTCCAATGGGCT 57.398 52.632 0.00 0.00 46.49 5.19
197 198 1.108776 CCATTCACTCCAATGGGCTG 58.891 55.000 0.00 0.00 46.49 4.85
198 199 1.341285 CCATTCACTCCAATGGGCTGA 60.341 52.381 0.00 0.00 46.49 4.26
199 200 2.022195 CATTCACTCCAATGGGCTGAG 58.978 52.381 0.00 0.00 31.10 3.35
200 201 1.361204 TTCACTCCAATGGGCTGAGA 58.639 50.000 0.00 0.00 0.00 3.27
201 202 1.361204 TCACTCCAATGGGCTGAGAA 58.639 50.000 0.00 0.00 0.00 2.87
202 203 1.918262 TCACTCCAATGGGCTGAGAAT 59.082 47.619 0.00 0.00 0.00 2.40
203 204 2.309755 TCACTCCAATGGGCTGAGAATT 59.690 45.455 0.00 0.00 0.00 2.17
204 205 2.686915 CACTCCAATGGGCTGAGAATTC 59.313 50.000 0.00 0.00 0.00 2.17
205 206 2.305009 CTCCAATGGGCTGAGAATTCC 58.695 52.381 0.65 0.00 0.00 3.01
206 207 1.640149 TCCAATGGGCTGAGAATTCCA 59.360 47.619 0.65 0.00 0.00 3.53
207 208 2.245546 TCCAATGGGCTGAGAATTCCAT 59.754 45.455 0.65 0.00 41.31 3.41
209 210 3.453353 CCAATGGGCTGAGAATTCCATTT 59.547 43.478 0.65 0.00 44.74 2.32
210 211 4.080751 CCAATGGGCTGAGAATTCCATTTT 60.081 41.667 0.65 0.00 44.74 1.82
211 212 4.748277 ATGGGCTGAGAATTCCATTTTG 57.252 40.909 0.65 0.00 36.69 2.44
212 213 3.509442 TGGGCTGAGAATTCCATTTTGT 58.491 40.909 0.65 0.00 0.00 2.83
213 214 3.903090 TGGGCTGAGAATTCCATTTTGTT 59.097 39.130 0.65 0.00 0.00 2.83
214 215 4.347583 TGGGCTGAGAATTCCATTTTGTTT 59.652 37.500 0.65 0.00 0.00 2.83
215 216 5.541868 TGGGCTGAGAATTCCATTTTGTTTA 59.458 36.000 0.65 0.00 0.00 2.01
216 217 6.042552 TGGGCTGAGAATTCCATTTTGTTTAA 59.957 34.615 0.65 0.00 0.00 1.52
217 218 6.368791 GGGCTGAGAATTCCATTTTGTTTAAC 59.631 38.462 0.65 0.00 0.00 2.01
218 219 7.154656 GGCTGAGAATTCCATTTTGTTTAACT 58.845 34.615 0.65 0.00 0.00 2.24
219 220 7.116805 GGCTGAGAATTCCATTTTGTTTAACTG 59.883 37.037 0.65 0.00 0.00 3.16
220 221 7.867403 GCTGAGAATTCCATTTTGTTTAACTGA 59.133 33.333 0.65 0.00 0.00 3.41
221 222 9.403110 CTGAGAATTCCATTTTGTTTAACTGAG 57.597 33.333 0.65 0.00 0.00 3.35
222 223 8.912988 TGAGAATTCCATTTTGTTTAACTGAGT 58.087 29.630 0.65 0.00 0.00 3.41
223 224 9.750125 GAGAATTCCATTTTGTTTAACTGAGTT 57.250 29.630 2.37 2.37 0.00 3.01
226 227 8.887036 ATTCCATTTTGTTTAACTGAGTTTCC 57.113 30.769 1.97 0.00 0.00 3.13
227 228 7.411486 TCCATTTTGTTTAACTGAGTTTCCA 57.589 32.000 1.97 0.00 0.00 3.53
228 229 7.841956 TCCATTTTGTTTAACTGAGTTTCCAA 58.158 30.769 1.97 1.69 0.00 3.53
229 230 8.314751 TCCATTTTGTTTAACTGAGTTTCCAAA 58.685 29.630 1.97 7.75 0.00 3.28
230 231 9.108284 CCATTTTGTTTAACTGAGTTTCCAAAT 57.892 29.630 1.97 2.85 0.00 2.32
235 236 9.796120 TTGTTTAACTGAGTTTCCAAATACTTG 57.204 29.630 1.97 0.00 0.00 3.16
236 237 9.179909 TGTTTAACTGAGTTTCCAAATACTTGA 57.820 29.630 1.97 0.00 34.14 3.02
239 240 7.881775 AACTGAGTTTCCAAATACTTGAACT 57.118 32.000 0.00 0.00 34.16 3.01
240 241 7.497925 ACTGAGTTTCCAAATACTTGAACTC 57.502 36.000 10.10 10.10 41.91 3.01
241 242 6.486993 ACTGAGTTTCCAAATACTTGAACTCC 59.513 38.462 12.99 1.22 41.40 3.85
242 243 6.601332 TGAGTTTCCAAATACTTGAACTCCT 58.399 36.000 12.99 0.00 41.40 3.69
243 244 7.060421 TGAGTTTCCAAATACTTGAACTCCTT 58.940 34.615 12.99 0.00 41.40 3.36
244 245 8.215050 TGAGTTTCCAAATACTTGAACTCCTTA 58.785 33.333 12.99 0.00 41.40 2.69
245 246 8.392372 AGTTTCCAAATACTTGAACTCCTTAC 57.608 34.615 0.00 0.00 34.14 2.34
246 247 8.218488 AGTTTCCAAATACTTGAACTCCTTACT 58.782 33.333 0.00 0.00 34.14 2.24
247 248 7.979444 TTCCAAATACTTGAACTCCTTACTG 57.021 36.000 0.00 0.00 34.14 2.74
248 249 7.311092 TCCAAATACTTGAACTCCTTACTGA 57.689 36.000 0.00 0.00 34.14 3.41
249 250 7.918076 TCCAAATACTTGAACTCCTTACTGAT 58.082 34.615 0.00 0.00 34.14 2.90
250 251 8.383175 TCCAAATACTTGAACTCCTTACTGATT 58.617 33.333 0.00 0.00 34.14 2.57
251 252 8.669243 CCAAATACTTGAACTCCTTACTGATTC 58.331 37.037 0.00 0.00 34.14 2.52
252 253 9.442047 CAAATACTTGAACTCCTTACTGATTCT 57.558 33.333 0.00 0.00 34.14 2.40
255 256 7.736447 ACTTGAACTCCTTACTGATTCTTTG 57.264 36.000 0.00 0.00 0.00 2.77
256 257 6.712547 ACTTGAACTCCTTACTGATTCTTTGG 59.287 38.462 0.00 0.00 0.00 3.28
257 258 5.560724 TGAACTCCTTACTGATTCTTTGGG 58.439 41.667 0.00 0.00 0.00 4.12
258 259 5.073144 TGAACTCCTTACTGATTCTTTGGGT 59.927 40.000 0.00 0.00 0.00 4.51
259 260 5.167303 ACTCCTTACTGATTCTTTGGGTC 57.833 43.478 0.00 0.00 0.00 4.46
260 261 4.019231 ACTCCTTACTGATTCTTTGGGTCC 60.019 45.833 0.00 0.00 0.00 4.46
261 262 3.913799 TCCTTACTGATTCTTTGGGTCCA 59.086 43.478 0.00 0.00 0.00 4.02
262 263 4.352595 TCCTTACTGATTCTTTGGGTCCAA 59.647 41.667 0.00 0.00 0.00 3.53
263 264 5.015178 TCCTTACTGATTCTTTGGGTCCAAT 59.985 40.000 3.00 0.00 35.70 3.16
264 265 5.126061 CCTTACTGATTCTTTGGGTCCAATG 59.874 44.000 3.00 6.30 35.70 2.82
265 266 4.118168 ACTGATTCTTTGGGTCCAATGT 57.882 40.909 13.14 0.00 35.70 2.71
266 267 4.082125 ACTGATTCTTTGGGTCCAATGTC 58.918 43.478 13.14 7.16 35.70 3.06
267 268 3.081061 TGATTCTTTGGGTCCAATGTCG 58.919 45.455 13.14 0.92 35.70 4.35
268 269 1.904287 TTCTTTGGGTCCAATGTCGG 58.096 50.000 13.14 0.00 35.70 4.79
269 270 0.768622 TCTTTGGGTCCAATGTCGGT 59.231 50.000 13.14 0.00 35.70 4.69
270 271 1.144093 TCTTTGGGTCCAATGTCGGTT 59.856 47.619 13.14 0.00 35.70 4.44
271 272 1.269448 CTTTGGGTCCAATGTCGGTTG 59.731 52.381 3.00 0.00 35.70 3.77
272 273 0.474614 TTGGGTCCAATGTCGGTTGA 59.525 50.000 0.00 0.00 0.00 3.18
273 274 0.250553 TGGGTCCAATGTCGGTTGAC 60.251 55.000 0.00 0.00 45.71 3.18
292 293 5.873179 TGACGAGCAACTTTAATAAAGGG 57.127 39.130 16.15 9.35 42.82 3.95
293 294 5.553123 TGACGAGCAACTTTAATAAAGGGA 58.447 37.500 16.15 0.00 42.82 4.20
294 295 5.998981 TGACGAGCAACTTTAATAAAGGGAA 59.001 36.000 16.15 0.00 42.82 3.97
295 296 6.487331 TGACGAGCAACTTTAATAAAGGGAAA 59.513 34.615 16.15 0.00 42.82 3.13
296 297 7.013464 TGACGAGCAACTTTAATAAAGGGAAAA 59.987 33.333 16.15 0.00 42.82 2.29
297 298 7.892609 ACGAGCAACTTTAATAAAGGGAAAAT 58.107 30.769 16.15 0.00 42.82 1.82
298 299 9.016438 ACGAGCAACTTTAATAAAGGGAAAATA 57.984 29.630 16.15 0.00 42.82 1.40
309 310 8.810990 AATAAAGGGAAAATATGTAACACCGA 57.189 30.769 0.00 0.00 0.00 4.69
310 311 8.810990 ATAAAGGGAAAATATGTAACACCGAA 57.189 30.769 0.00 0.00 0.00 4.30
311 312 6.753107 AAGGGAAAATATGTAACACCGAAG 57.247 37.500 0.00 0.00 0.00 3.79
347 348 9.741647 AAAAAGCAAAAGAAATGACAAAAACAA 57.258 22.222 0.00 0.00 0.00 2.83
348 349 9.741647 AAAAGCAAAAGAAATGACAAAAACAAA 57.258 22.222 0.00 0.00 0.00 2.83
349 350 9.741647 AAAGCAAAAGAAATGACAAAAACAAAA 57.258 22.222 0.00 0.00 0.00 2.44
350 351 9.911138 AAGCAAAAGAAATGACAAAAACAAAAT 57.089 22.222 0.00 0.00 0.00 1.82
423 424 1.405526 GCTATTGCTTCTGGTCGTCCA 60.406 52.381 0.39 0.39 37.95 4.02
478 479 0.673644 AGGAAATCAACCCGCAGTCG 60.674 55.000 0.00 0.00 0.00 4.18
735 753 2.048222 CTCCTTGCACCGCTTCGA 60.048 61.111 0.00 0.00 0.00 3.71
757 775 4.662961 CTCACTCGCCACACGCCA 62.663 66.667 0.00 0.00 43.23 5.69
854 880 3.322466 CTCACAACCCCGGCCTCT 61.322 66.667 0.00 0.00 0.00 3.69
857 883 2.529389 ACAACCCCGGCCTCTTCT 60.529 61.111 0.00 0.00 0.00 2.85
858 884 1.229400 ACAACCCCGGCCTCTTCTA 60.229 57.895 0.00 0.00 0.00 2.10
873 899 1.950909 CTTCTATCGACCTCGCCTCTT 59.049 52.381 0.00 0.00 39.60 2.85
876 902 1.164662 TATCGACCTCGCCTCTTCGG 61.165 60.000 0.00 0.00 39.60 4.30
889 915 2.203042 TTCGGGCGAACAAACGGT 60.203 55.556 0.00 0.00 0.00 4.83
896 922 2.526993 CGAACAAACGGTGTCGCCA 61.527 57.895 2.76 0.00 40.60 5.69
898 924 1.153329 AACAAACGGTGTCGCCAGA 60.153 52.632 2.76 0.00 40.60 3.86
923 949 1.452651 CTCGGCCACCATGCTTGAT 60.453 57.895 2.24 0.00 0.00 2.57
1096 1123 3.785859 GGAGCACATCGAGGCCCA 61.786 66.667 0.00 0.00 0.00 5.36
1133 1160 2.344203 CGGAGACTCGGAAGCCAGT 61.344 63.158 4.02 0.00 0.00 4.00
1210 1237 2.509131 TCCACCATCTCATGTATGCCAA 59.491 45.455 0.00 0.00 0.00 4.52
1243 1270 0.179029 CGTGTGTTCCCAACTCCCTT 60.179 55.000 0.00 0.00 0.00 3.95
1258 1285 1.968017 CCTTGGTGCGTGCTCATGT 60.968 57.895 0.00 0.00 0.00 3.21
1261 1288 1.063027 CTTGGTGCGTGCTCATGTATG 59.937 52.381 0.00 0.00 0.00 2.39
1319 1346 3.854669 CGGCCAGATCTTCCGCCT 61.855 66.667 17.25 0.00 39.34 5.52
1368 1395 3.470433 GGCAACAACTGGGCCAAT 58.530 55.556 8.04 0.00 46.92 3.16
1496 1524 1.610038 TCGCTCCAGTTACTTCGTTCA 59.390 47.619 0.00 0.00 0.00 3.18
1517 1545 1.386533 CAGATTCTGGCCAGCGATTT 58.613 50.000 28.91 15.84 0.00 2.17
1680 1732 1.669440 GTGGTCGAGCCCTACAACA 59.331 57.895 12.85 0.00 36.04 3.33
1778 1830 1.596934 CTTCCGCACCCTCAAGCTA 59.403 57.895 0.00 0.00 0.00 3.32
2199 2271 4.577283 GGTTTGTTGTTACAAGGTGCTCTA 59.423 41.667 0.00 0.00 44.56 2.43
2640 2786 1.548719 CCGTGGTGAGTGAAGTATGGA 59.451 52.381 0.00 0.00 0.00 3.41
2797 2944 9.635520 GCTTATTGTTCTGTGAAGTAACTACTA 57.364 33.333 0.00 0.00 34.99 1.82
3823 4041 4.454678 TGTTGCACAACTTCTCTGATCTT 58.545 39.130 14.16 0.00 41.67 2.40
3857 4075 0.313043 CAGTCGGTGTGGTCGTTAGT 59.687 55.000 0.00 0.00 0.00 2.24
3960 4198 6.127168 TGTCCAGGAAATAATCATCACGTACT 60.127 38.462 0.00 0.00 0.00 2.73
4284 4639 3.364964 CGTGGTTACTTGGTGATGCTTTC 60.365 47.826 0.00 0.00 0.00 2.62
4391 4746 9.847224 TCTCTTTCTGGTTTGAGTTTAGTATTT 57.153 29.630 0.00 0.00 0.00 1.40
4515 4870 1.607628 GCCATGCTTTCTATCTGCAGG 59.392 52.381 15.13 0.00 40.18 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.298250 CAGAAATGATCCAATCAATAAGGAGAT 57.702 33.333 0.00 0.00 43.50 2.75
52 53 7.230108 GCAGAAATGATCCAATCAATAAGGAGA 59.770 37.037 0.00 0.00 43.50 3.71
53 54 7.230913 AGCAGAAATGATCCAATCAATAAGGAG 59.769 37.037 0.00 0.00 43.50 3.69
55 56 7.286215 AGCAGAAATGATCCAATCAATAAGG 57.714 36.000 0.00 0.00 43.50 2.69
59 60 8.523658 CATCATAGCAGAAATGATCCAATCAAT 58.476 33.333 0.00 0.00 41.13 2.57
60 61 7.722285 TCATCATAGCAGAAATGATCCAATCAA 59.278 33.333 0.00 0.00 41.13 2.57
61 62 7.228590 TCATCATAGCAGAAATGATCCAATCA 58.771 34.615 0.00 0.00 41.13 2.57
62 63 7.390996 ACTCATCATAGCAGAAATGATCCAATC 59.609 37.037 0.00 0.00 41.13 2.67
63 64 7.175119 CACTCATCATAGCAGAAATGATCCAAT 59.825 37.037 0.00 0.00 41.13 3.16
64 65 6.485648 CACTCATCATAGCAGAAATGATCCAA 59.514 38.462 0.00 0.00 41.13 3.53
65 66 5.995897 CACTCATCATAGCAGAAATGATCCA 59.004 40.000 0.00 0.00 41.13 3.41
66 67 5.106634 GCACTCATCATAGCAGAAATGATCC 60.107 44.000 0.00 0.00 41.13 3.36
67 68 5.469084 TGCACTCATCATAGCAGAAATGATC 59.531 40.000 0.00 0.00 41.13 2.92
68 69 5.374071 TGCACTCATCATAGCAGAAATGAT 58.626 37.500 0.00 0.00 43.28 2.45
69 70 4.773013 TGCACTCATCATAGCAGAAATGA 58.227 39.130 0.00 0.00 37.73 2.57
70 71 5.494632 TTGCACTCATCATAGCAGAAATG 57.505 39.130 0.00 0.00 38.35 2.32
71 72 5.651139 AGTTTGCACTCATCATAGCAGAAAT 59.349 36.000 0.00 0.00 38.35 2.17
72 73 5.005740 AGTTTGCACTCATCATAGCAGAAA 58.994 37.500 0.00 0.00 38.35 2.52
73 74 4.393990 CAGTTTGCACTCATCATAGCAGAA 59.606 41.667 0.00 0.00 38.35 3.02
74 75 3.937079 CAGTTTGCACTCATCATAGCAGA 59.063 43.478 0.00 0.00 38.35 4.26
75 76 3.937079 TCAGTTTGCACTCATCATAGCAG 59.063 43.478 0.00 0.00 38.35 4.24
76 77 3.937079 CTCAGTTTGCACTCATCATAGCA 59.063 43.478 0.00 0.00 34.79 3.49
77 78 3.311871 CCTCAGTTTGCACTCATCATAGC 59.688 47.826 0.00 0.00 0.00 2.97
78 79 3.875727 CCCTCAGTTTGCACTCATCATAG 59.124 47.826 0.00 0.00 0.00 2.23
79 80 3.519107 TCCCTCAGTTTGCACTCATCATA 59.481 43.478 0.00 0.00 0.00 2.15
80 81 2.306805 TCCCTCAGTTTGCACTCATCAT 59.693 45.455 0.00 0.00 0.00 2.45
81 82 1.699083 TCCCTCAGTTTGCACTCATCA 59.301 47.619 0.00 0.00 0.00 3.07
82 83 2.027745 TCTCCCTCAGTTTGCACTCATC 60.028 50.000 0.00 0.00 0.00 2.92
83 84 1.980765 TCTCCCTCAGTTTGCACTCAT 59.019 47.619 0.00 0.00 0.00 2.90
84 85 1.070758 GTCTCCCTCAGTTTGCACTCA 59.929 52.381 0.00 0.00 0.00 3.41
85 86 1.346068 AGTCTCCCTCAGTTTGCACTC 59.654 52.381 0.00 0.00 0.00 3.51
86 87 1.428869 AGTCTCCCTCAGTTTGCACT 58.571 50.000 0.00 0.00 0.00 4.40
87 88 1.876156 CAAGTCTCCCTCAGTTTGCAC 59.124 52.381 0.00 0.00 0.00 4.57
88 89 1.768275 TCAAGTCTCCCTCAGTTTGCA 59.232 47.619 0.00 0.00 0.00 4.08
89 90 2.550830 TCAAGTCTCCCTCAGTTTGC 57.449 50.000 0.00 0.00 0.00 3.68
90 91 5.819901 GGATAATCAAGTCTCCCTCAGTTTG 59.180 44.000 0.00 0.00 0.00 2.93
91 92 5.488919 TGGATAATCAAGTCTCCCTCAGTTT 59.511 40.000 0.00 0.00 0.00 2.66
92 93 5.032846 TGGATAATCAAGTCTCCCTCAGTT 58.967 41.667 0.00 0.00 0.00 3.16
93 94 4.624913 TGGATAATCAAGTCTCCCTCAGT 58.375 43.478 0.00 0.00 0.00 3.41
94 95 5.822132 ATGGATAATCAAGTCTCCCTCAG 57.178 43.478 0.00 0.00 0.00 3.35
95 96 6.268617 CAGTATGGATAATCAAGTCTCCCTCA 59.731 42.308 0.00 0.00 0.00 3.86
96 97 6.268847 ACAGTATGGATAATCAAGTCTCCCTC 59.731 42.308 0.00 0.00 43.62 4.30
97 98 6.146760 ACAGTATGGATAATCAAGTCTCCCT 58.853 40.000 0.00 0.00 43.62 4.20
98 99 6.426646 ACAGTATGGATAATCAAGTCTCCC 57.573 41.667 0.00 0.00 43.62 4.30
99 100 7.225538 CACAACAGTATGGATAATCAAGTCTCC 59.774 40.741 0.00 0.00 43.62 3.71
100 101 7.981789 TCACAACAGTATGGATAATCAAGTCTC 59.018 37.037 0.00 0.00 43.62 3.36
101 102 7.851228 TCACAACAGTATGGATAATCAAGTCT 58.149 34.615 0.00 0.00 43.62 3.24
102 103 7.225538 CCTCACAACAGTATGGATAATCAAGTC 59.774 40.741 0.00 0.00 43.62 3.01
103 104 7.050377 CCTCACAACAGTATGGATAATCAAGT 58.950 38.462 0.00 0.00 43.62 3.16
104 105 7.275183 TCCTCACAACAGTATGGATAATCAAG 58.725 38.462 0.00 0.00 43.62 3.02
105 106 7.092891 ACTCCTCACAACAGTATGGATAATCAA 60.093 37.037 0.00 0.00 43.62 2.57
106 107 6.384015 ACTCCTCACAACAGTATGGATAATCA 59.616 38.462 0.00 0.00 43.62 2.57
107 108 6.703607 CACTCCTCACAACAGTATGGATAATC 59.296 42.308 0.00 0.00 43.62 1.75
108 109 6.586344 CACTCCTCACAACAGTATGGATAAT 58.414 40.000 0.00 0.00 43.62 1.28
109 110 5.626809 GCACTCCTCACAACAGTATGGATAA 60.627 44.000 0.00 0.00 43.62 1.75
110 111 4.141937 GCACTCCTCACAACAGTATGGATA 60.142 45.833 0.00 0.00 43.62 2.59
111 112 3.369892 GCACTCCTCACAACAGTATGGAT 60.370 47.826 0.00 0.00 43.62 3.41
112 113 2.028112 GCACTCCTCACAACAGTATGGA 60.028 50.000 0.00 0.00 43.62 3.41
113 114 2.289631 TGCACTCCTCACAACAGTATGG 60.290 50.000 0.00 0.00 43.62 2.74
114 115 2.738846 GTGCACTCCTCACAACAGTATG 59.261 50.000 10.32 0.00 36.90 2.39
115 116 2.368548 TGTGCACTCCTCACAACAGTAT 59.631 45.455 19.41 0.00 41.01 2.12
116 117 1.760029 TGTGCACTCCTCACAACAGTA 59.240 47.619 19.41 0.00 41.01 2.74
117 118 0.541392 TGTGCACTCCTCACAACAGT 59.459 50.000 19.41 0.00 41.01 3.55
118 119 1.888215 ATGTGCACTCCTCACAACAG 58.112 50.000 19.41 0.00 46.07 3.16
119 120 2.346766 AATGTGCACTCCTCACAACA 57.653 45.000 19.41 0.00 46.07 3.33
120 121 4.726416 CATTAATGTGCACTCCTCACAAC 58.274 43.478 19.41 0.00 46.07 3.32
121 122 3.191162 GCATTAATGTGCACTCCTCACAA 59.809 43.478 19.41 3.02 46.07 3.33
122 123 2.749076 GCATTAATGTGCACTCCTCACA 59.251 45.455 19.41 0.00 46.86 3.58
123 124 3.411415 GCATTAATGTGCACTCCTCAC 57.589 47.619 19.41 0.00 44.43 3.51
132 133 4.931002 ACCATCAAGTTTGCATTAATGTGC 59.069 37.500 16.61 5.72 45.25 4.57
133 134 6.157904 TGACCATCAAGTTTGCATTAATGTG 58.842 36.000 16.61 6.27 0.00 3.21
134 135 6.343716 TGACCATCAAGTTTGCATTAATGT 57.656 33.333 16.61 0.00 0.00 2.71
135 136 5.290158 GCTGACCATCAAGTTTGCATTAATG 59.710 40.000 11.27 11.27 0.00 1.90
136 137 5.047164 TGCTGACCATCAAGTTTGCATTAAT 60.047 36.000 0.00 0.00 0.00 1.40
137 138 4.280425 TGCTGACCATCAAGTTTGCATTAA 59.720 37.500 0.00 0.00 0.00 1.40
138 139 3.825585 TGCTGACCATCAAGTTTGCATTA 59.174 39.130 0.00 0.00 0.00 1.90
139 140 2.629137 TGCTGACCATCAAGTTTGCATT 59.371 40.909 0.00 0.00 0.00 3.56
140 141 2.241160 TGCTGACCATCAAGTTTGCAT 58.759 42.857 0.00 0.00 0.00 3.96
141 142 1.689984 TGCTGACCATCAAGTTTGCA 58.310 45.000 0.00 0.00 0.00 4.08
151 152 4.652679 ATATGACCATGATGCTGACCAT 57.347 40.909 0.00 0.00 36.70 3.55
152 153 5.767277 ATATATGACCATGATGCTGACCA 57.233 39.130 0.00 0.00 0.00 4.02
153 154 6.413052 AGAATATATGACCATGATGCTGACC 58.587 40.000 0.00 0.00 0.00 4.02
154 155 6.538021 GGAGAATATATGACCATGATGCTGAC 59.462 42.308 0.00 0.00 0.00 3.51
155 156 6.214005 TGGAGAATATATGACCATGATGCTGA 59.786 38.462 0.00 0.00 0.00 4.26
156 157 6.412214 TGGAGAATATATGACCATGATGCTG 58.588 40.000 0.00 0.00 0.00 4.41
157 158 6.631763 TGGAGAATATATGACCATGATGCT 57.368 37.500 0.00 0.00 0.00 3.79
158 159 7.555195 TGAATGGAGAATATATGACCATGATGC 59.445 37.037 14.91 8.82 40.56 3.91
159 160 8.890718 GTGAATGGAGAATATATGACCATGATG 58.109 37.037 14.91 0.00 40.56 3.07
160 161 8.833734 AGTGAATGGAGAATATATGACCATGAT 58.166 33.333 14.91 5.31 40.56 2.45
161 162 8.211030 AGTGAATGGAGAATATATGACCATGA 57.789 34.615 14.91 6.64 40.56 3.07
162 163 7.551974 GGAGTGAATGGAGAATATATGACCATG 59.448 40.741 14.91 0.00 40.56 3.66
163 164 7.238305 TGGAGTGAATGGAGAATATATGACCAT 59.762 37.037 10.75 10.75 42.17 3.55
164 165 6.558394 TGGAGTGAATGGAGAATATATGACCA 59.442 38.462 7.80 7.80 35.09 4.02
165 166 7.009179 TGGAGTGAATGGAGAATATATGACC 57.991 40.000 0.00 0.00 0.00 4.02
166 167 8.944029 CATTGGAGTGAATGGAGAATATATGAC 58.056 37.037 0.00 0.00 30.82 3.06
179 180 2.022195 CTCAGCCCATTGGAGTGAATG 58.978 52.381 3.62 0.00 33.74 2.67
180 181 1.918262 TCTCAGCCCATTGGAGTGAAT 59.082 47.619 3.62 0.00 0.00 2.57
181 182 1.361204 TCTCAGCCCATTGGAGTGAA 58.639 50.000 3.62 0.00 0.00 3.18
182 183 1.361204 TTCTCAGCCCATTGGAGTGA 58.639 50.000 3.62 5.58 0.00 3.41
183 184 2.431954 ATTCTCAGCCCATTGGAGTG 57.568 50.000 3.62 0.97 0.00 3.51
184 185 2.357569 GGAATTCTCAGCCCATTGGAGT 60.358 50.000 3.62 0.00 0.00 3.85
185 186 2.305009 GGAATTCTCAGCCCATTGGAG 58.695 52.381 3.62 0.00 0.00 3.86
186 187 1.640149 TGGAATTCTCAGCCCATTGGA 59.360 47.619 3.62 0.00 0.00 3.53
187 188 2.148446 TGGAATTCTCAGCCCATTGG 57.852 50.000 5.23 0.00 0.00 3.16
188 189 4.748277 AAATGGAATTCTCAGCCCATTG 57.252 40.909 5.23 0.00 45.60 2.82
190 191 4.098894 ACAAAATGGAATTCTCAGCCCAT 58.901 39.130 5.23 0.00 40.84 4.00
191 192 3.509442 ACAAAATGGAATTCTCAGCCCA 58.491 40.909 5.23 0.00 33.67 5.36
192 193 4.541973 AACAAAATGGAATTCTCAGCCC 57.458 40.909 5.23 0.00 33.67 5.19
193 194 7.116805 CAGTTAAACAAAATGGAATTCTCAGCC 59.883 37.037 5.23 0.00 33.67 4.85
194 195 7.867403 TCAGTTAAACAAAATGGAATTCTCAGC 59.133 33.333 5.23 0.00 33.67 4.26
195 196 9.403110 CTCAGTTAAACAAAATGGAATTCTCAG 57.597 33.333 5.23 0.00 33.67 3.35
196 197 8.912988 ACTCAGTTAAACAAAATGGAATTCTCA 58.087 29.630 5.23 2.28 33.67 3.27
197 198 9.750125 AACTCAGTTAAACAAAATGGAATTCTC 57.250 29.630 5.23 0.00 33.67 2.87
200 201 9.325198 GGAAACTCAGTTAAACAAAATGGAATT 57.675 29.630 0.00 0.00 38.98 2.17
201 202 8.482128 TGGAAACTCAGTTAAACAAAATGGAAT 58.518 29.630 0.00 0.00 33.95 3.01
202 203 7.841956 TGGAAACTCAGTTAAACAAAATGGAA 58.158 30.769 0.00 0.00 33.95 3.53
203 204 7.411486 TGGAAACTCAGTTAAACAAAATGGA 57.589 32.000 0.00 0.00 33.95 3.41
204 205 8.485976 TTTGGAAACTCAGTTAAACAAAATGG 57.514 30.769 10.22 0.00 33.95 3.16
209 210 9.796120 CAAGTATTTGGAAACTCAGTTAAACAA 57.204 29.630 0.00 0.00 0.00 2.83
210 211 9.179909 TCAAGTATTTGGAAACTCAGTTAAACA 57.820 29.630 0.00 0.00 34.97 2.83
213 214 9.403583 AGTTCAAGTATTTGGAAACTCAGTTAA 57.596 29.630 0.00 0.00 30.00 2.01
214 215 8.974060 AGTTCAAGTATTTGGAAACTCAGTTA 57.026 30.769 0.00 0.00 30.00 2.24
215 216 7.013369 GGAGTTCAAGTATTTGGAAACTCAGTT 59.987 37.037 22.71 0.00 43.28 3.16
216 217 6.486993 GGAGTTCAAGTATTTGGAAACTCAGT 59.513 38.462 22.71 0.86 43.28 3.41
217 218 6.712547 AGGAGTTCAAGTATTTGGAAACTCAG 59.287 38.462 22.71 0.00 43.28 3.35
218 219 6.601332 AGGAGTTCAAGTATTTGGAAACTCA 58.399 36.000 22.71 0.00 43.28 3.41
219 220 7.511959 AAGGAGTTCAAGTATTTGGAAACTC 57.488 36.000 17.38 17.38 42.10 3.01
220 221 8.218488 AGTAAGGAGTTCAAGTATTTGGAAACT 58.782 33.333 5.17 5.17 35.35 2.66
221 222 8.290325 CAGTAAGGAGTTCAAGTATTTGGAAAC 58.710 37.037 0.00 0.00 34.97 2.78
222 223 8.215050 TCAGTAAGGAGTTCAAGTATTTGGAAA 58.785 33.333 0.00 0.00 34.97 3.13
223 224 7.741785 TCAGTAAGGAGTTCAAGTATTTGGAA 58.258 34.615 0.00 0.00 34.97 3.53
224 225 7.311092 TCAGTAAGGAGTTCAAGTATTTGGA 57.689 36.000 0.00 0.00 34.97 3.53
225 226 8.567285 AATCAGTAAGGAGTTCAAGTATTTGG 57.433 34.615 0.00 0.00 34.97 3.28
226 227 9.442047 AGAATCAGTAAGGAGTTCAAGTATTTG 57.558 33.333 0.00 0.00 35.57 2.32
229 230 9.442047 CAAAGAATCAGTAAGGAGTTCAAGTAT 57.558 33.333 0.00 0.00 0.00 2.12
230 231 7.878127 CCAAAGAATCAGTAAGGAGTTCAAGTA 59.122 37.037 0.00 0.00 0.00 2.24
231 232 6.712547 CCAAAGAATCAGTAAGGAGTTCAAGT 59.287 38.462 0.00 0.00 0.00 3.16
232 233 6.150140 CCCAAAGAATCAGTAAGGAGTTCAAG 59.850 42.308 0.00 0.00 0.00 3.02
233 234 6.003950 CCCAAAGAATCAGTAAGGAGTTCAA 58.996 40.000 0.00 0.00 0.00 2.69
234 235 5.073144 ACCCAAAGAATCAGTAAGGAGTTCA 59.927 40.000 0.00 0.00 0.00 3.18
235 236 5.561679 ACCCAAAGAATCAGTAAGGAGTTC 58.438 41.667 0.00 0.00 0.00 3.01
236 237 5.515008 GGACCCAAAGAATCAGTAAGGAGTT 60.515 44.000 0.00 0.00 0.00 3.01
237 238 4.019231 GGACCCAAAGAATCAGTAAGGAGT 60.019 45.833 0.00 0.00 0.00 3.85
238 239 4.019321 TGGACCCAAAGAATCAGTAAGGAG 60.019 45.833 0.00 0.00 0.00 3.69
239 240 3.913799 TGGACCCAAAGAATCAGTAAGGA 59.086 43.478 0.00 0.00 0.00 3.36
240 241 4.301072 TGGACCCAAAGAATCAGTAAGG 57.699 45.455 0.00 0.00 0.00 2.69
241 242 5.711976 ACATTGGACCCAAAGAATCAGTAAG 59.288 40.000 10.56 0.00 39.55 2.34
242 243 5.640147 ACATTGGACCCAAAGAATCAGTAA 58.360 37.500 10.56 0.00 39.55 2.24
243 244 5.253330 GACATTGGACCCAAAGAATCAGTA 58.747 41.667 10.56 0.00 39.55 2.74
244 245 4.082125 GACATTGGACCCAAAGAATCAGT 58.918 43.478 10.56 0.29 39.55 3.41
245 246 3.127548 CGACATTGGACCCAAAGAATCAG 59.872 47.826 10.56 0.00 39.55 2.90
246 247 3.081061 CGACATTGGACCCAAAGAATCA 58.919 45.455 10.56 0.00 39.55 2.57
247 248 2.423538 CCGACATTGGACCCAAAGAATC 59.576 50.000 10.56 3.75 39.55 2.52
248 249 2.225017 ACCGACATTGGACCCAAAGAAT 60.225 45.455 10.56 0.00 39.55 2.40
249 250 1.144093 ACCGACATTGGACCCAAAGAA 59.856 47.619 10.56 0.00 39.55 2.52
250 251 0.768622 ACCGACATTGGACCCAAAGA 59.231 50.000 10.56 0.00 39.55 2.52
251 252 1.269448 CAACCGACATTGGACCCAAAG 59.731 52.381 5.49 4.03 39.55 2.77
252 253 1.133761 TCAACCGACATTGGACCCAAA 60.134 47.619 5.49 0.00 39.55 3.28
253 254 0.474614 TCAACCGACATTGGACCCAA 59.525 50.000 3.70 3.70 40.47 4.12
254 255 0.250553 GTCAACCGACATTGGACCCA 60.251 55.000 0.00 0.00 42.13 4.51
255 256 1.296056 CGTCAACCGACATTGGACCC 61.296 60.000 0.00 0.00 42.74 4.46
256 257 0.320073 TCGTCAACCGACATTGGACC 60.320 55.000 0.00 0.00 42.74 4.46
257 258 1.068474 CTCGTCAACCGACATTGGAC 58.932 55.000 0.00 0.00 42.74 4.02
258 259 0.669318 GCTCGTCAACCGACATTGGA 60.669 55.000 0.00 0.00 42.74 3.53
259 260 0.948623 TGCTCGTCAACCGACATTGG 60.949 55.000 0.00 0.00 42.74 3.16
260 261 0.865111 TTGCTCGTCAACCGACATTG 59.135 50.000 0.00 0.00 42.74 2.82
261 262 3.299050 TTGCTCGTCAACCGACATT 57.701 47.368 0.00 0.00 42.74 2.71
269 270 5.998981 TCCCTTTATTAAAGTTGCTCGTCAA 59.001 36.000 13.68 0.00 36.77 3.18
270 271 5.553123 TCCCTTTATTAAAGTTGCTCGTCA 58.447 37.500 13.68 0.00 36.77 4.35
271 272 6.490566 TTCCCTTTATTAAAGTTGCTCGTC 57.509 37.500 13.68 0.00 36.77 4.20
272 273 6.887626 TTTCCCTTTATTAAAGTTGCTCGT 57.112 33.333 13.68 0.00 36.77 4.18
283 284 9.902684 TCGGTGTTACATATTTTCCCTTTATTA 57.097 29.630 0.00 0.00 0.00 0.98
284 285 8.810990 TCGGTGTTACATATTTTCCCTTTATT 57.189 30.769 0.00 0.00 0.00 1.40
285 286 8.810990 TTCGGTGTTACATATTTTCCCTTTAT 57.189 30.769 0.00 0.00 0.00 1.40
286 287 7.337436 CCTTCGGTGTTACATATTTTCCCTTTA 59.663 37.037 0.00 0.00 0.00 1.85
287 288 6.152154 CCTTCGGTGTTACATATTTTCCCTTT 59.848 38.462 0.00 0.00 0.00 3.11
288 289 5.650703 CCTTCGGTGTTACATATTTTCCCTT 59.349 40.000 0.00 0.00 0.00 3.95
289 290 5.190677 CCTTCGGTGTTACATATTTTCCCT 58.809 41.667 0.00 0.00 0.00 4.20
290 291 4.201980 GCCTTCGGTGTTACATATTTTCCC 60.202 45.833 0.00 0.00 0.00 3.97
291 292 4.201980 GGCCTTCGGTGTTACATATTTTCC 60.202 45.833 0.00 0.00 0.00 3.13
292 293 4.201980 GGGCCTTCGGTGTTACATATTTTC 60.202 45.833 0.84 0.00 0.00 2.29
293 294 3.697542 GGGCCTTCGGTGTTACATATTTT 59.302 43.478 0.84 0.00 0.00 1.82
294 295 3.284617 GGGCCTTCGGTGTTACATATTT 58.715 45.455 0.84 0.00 0.00 1.40
295 296 2.240160 TGGGCCTTCGGTGTTACATATT 59.760 45.455 4.53 0.00 0.00 1.28
296 297 1.841277 TGGGCCTTCGGTGTTACATAT 59.159 47.619 4.53 0.00 0.00 1.78
297 298 1.277579 TGGGCCTTCGGTGTTACATA 58.722 50.000 4.53 0.00 0.00 2.29
298 299 0.402504 TTGGGCCTTCGGTGTTACAT 59.597 50.000 4.53 0.00 0.00 2.29
299 300 0.183014 TTTGGGCCTTCGGTGTTACA 59.817 50.000 4.53 0.00 0.00 2.41
300 301 0.879090 CTTTGGGCCTTCGGTGTTAC 59.121 55.000 4.53 0.00 0.00 2.50
301 302 0.766131 TCTTTGGGCCTTCGGTGTTA 59.234 50.000 4.53 0.00 0.00 2.41
302 303 0.106419 TTCTTTGGGCCTTCGGTGTT 60.106 50.000 4.53 0.00 0.00 3.32
303 304 0.106419 TTTCTTTGGGCCTTCGGTGT 60.106 50.000 4.53 0.00 0.00 4.16
304 305 1.036707 TTTTCTTTGGGCCTTCGGTG 58.963 50.000 4.53 0.00 0.00 4.94
305 306 1.783071 TTTTTCTTTGGGCCTTCGGT 58.217 45.000 4.53 0.00 0.00 4.69
321 322 9.741647 TTGTTTTTGTCATTTCTTTTGCTTTTT 57.258 22.222 0.00 0.00 0.00 1.94
322 323 9.741647 TTTGTTTTTGTCATTTCTTTTGCTTTT 57.258 22.222 0.00 0.00 0.00 2.27
323 324 9.741647 TTTTGTTTTTGTCATTTCTTTTGCTTT 57.258 22.222 0.00 0.00 0.00 3.51
324 325 9.911138 ATTTTGTTTTTGTCATTTCTTTTGCTT 57.089 22.222 0.00 0.00 0.00 3.91
478 479 0.598065 CTGGGTGCCACTAAAACAGC 59.402 55.000 0.00 0.00 0.00 4.40
832 858 3.246112 CCGGGGTTGTGAGGGACA 61.246 66.667 0.00 0.00 0.00 4.02
838 864 2.852075 AAGAGGCCGGGGTTGTGA 60.852 61.111 2.18 0.00 0.00 3.58
840 866 0.620700 ATAGAAGAGGCCGGGGTTGT 60.621 55.000 2.18 0.00 0.00 3.32
857 883 1.164662 CCGAAGAGGCGAGGTCGATA 61.165 60.000 2.94 0.00 43.02 2.92
858 884 2.482333 CCGAAGAGGCGAGGTCGAT 61.482 63.158 2.94 0.00 43.02 3.59
873 899 2.968156 CACCGTTTGTTCGCCCGA 60.968 61.111 0.00 0.00 0.00 5.14
876 902 2.247267 CGACACCGTTTGTTCGCC 59.753 61.111 0.00 0.00 39.17 5.54
1114 1141 2.282958 TGGCTTCCGAGTCTCCGT 60.283 61.111 0.00 0.00 0.00 4.69
1226 1253 3.819245 CAAGGGAGTTGGGAACACA 57.181 52.632 0.00 0.00 42.67 3.72
1243 1270 0.036483 ACATACATGAGCACGCACCA 60.036 50.000 0.00 0.00 0.00 4.17
1496 1524 1.980784 ATCGCTGGCCAGAATCTGCT 61.981 55.000 37.21 9.62 0.00 4.24
1517 1545 5.070770 ACAAGCACATGAACAAAAGTCAA 57.929 34.783 0.00 0.00 0.00 3.18
1680 1732 1.821753 CTGGTGAACCGAGAGAGTGAT 59.178 52.381 0.00 0.00 39.43 3.06
1778 1830 1.697432 TGCTTACAGCTAGGTGTGGTT 59.303 47.619 32.44 12.28 42.97 3.67
2014 2084 1.063912 TGACAAGAGTTGCAAAGCACG 59.936 47.619 0.00 0.00 38.71 5.34
2258 2330 5.623264 CGAACTATTGAGCTTAGATCTCACG 59.377 44.000 0.00 0.00 39.99 4.35
2640 2786 5.047235 AGTCAGCTTAACCGACAGACTAAAT 60.047 40.000 4.19 0.00 33.51 1.40
2711 2857 5.128663 AGGTTTTGTTAGCATGACCAACTTT 59.871 36.000 12.32 0.00 34.39 2.66
2797 2944 5.461737 CGTGCACAAAATTTTCTGGTACAAT 59.538 36.000 18.64 0.00 38.70 2.71
3000 3147 6.183361 CCCTCTATAGTGGCAGATAAGTTTGT 60.183 42.308 14.33 0.00 0.00 2.83
3213 3360 3.440173 TCACAAAATTGGCTCGGAAGATC 59.560 43.478 0.00 0.00 40.84 2.75
3413 3571 5.699097 TGTTGCAGAGTTAAATGGGTTAC 57.301 39.130 0.00 0.00 0.00 2.50
3414 3572 4.217550 GCTGTTGCAGAGTTAAATGGGTTA 59.782 41.667 0.00 0.00 39.41 2.85
3483 3642 7.707035 GTGAACCACAATAACCAAACAACAATA 59.293 33.333 0.00 0.00 34.08 1.90
3533 3692 9.654663 GGATTGTTAGTGTAATCCTACCATATC 57.345 37.037 8.37 0.00 45.66 1.63
3823 4041 3.576982 ACCGACTGAACAAATCTACTGGA 59.423 43.478 0.00 0.00 0.00 3.86
3898 4116 7.335673 TGAGTGTAGTTTTCAGATGACAAACAA 59.664 33.333 16.03 5.69 32.59 2.83
3960 4198 3.764434 GGAAGGAGTACAGAGTGATGTCA 59.236 47.826 0.00 0.00 34.56 3.58
4038 4321 5.546621 AAAGTTACTGAGCAGTACCTCAA 57.453 39.130 9.72 0.00 43.02 3.02
4284 4639 6.017109 TCAGGCTAAAAAGTTCTAGCAAACTG 60.017 38.462 15.26 13.18 41.96 3.16
4470 4825 0.674581 ACCGTCGGTACTGTGATCGA 60.675 55.000 17.19 0.00 32.11 3.59
4515 4870 5.989777 TGCAGTTAGACTTTTAGTTGGAGAC 59.010 40.000 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.