Multiple sequence alignment - TraesCS1A01G100800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G100800 chr1A 100.000 2980 0 0 1 2980 97164349 97161370 0.000000e+00 5504.0
1 TraesCS1A01G100800 chr3A 96.506 2204 60 9 679 2875 136527865 136525672 0.000000e+00 3627.0
2 TraesCS1A01G100800 chr3A 91.643 347 25 4 232 576 11288532 11288188 7.470000e-131 477.0
3 TraesCS1A01G100800 chr3A 89.381 339 28 2 232 569 511824399 511824068 1.280000e-113 420.0
4 TraesCS1A01G100800 chr3A 88.430 242 9 8 1 227 694106597 694106834 1.050000e-69 274.0
5 TraesCS1A01G100800 chr2A 95.945 2195 63 6 676 2868 22589582 22591752 0.000000e+00 3537.0
6 TraesCS1A01G100800 chr2A 96.190 2100 58 5 770 2867 22627938 22630017 0.000000e+00 3415.0
7 TraesCS1A01G100800 chr2A 94.367 2219 68 24 681 2868 772956025 772958217 0.000000e+00 3352.0
8 TraesCS1A01G100800 chr2A 93.744 2206 88 25 707 2875 700237761 700235569 0.000000e+00 3264.0
9 TraesCS1A01G100800 chr2A 87.391 230 19 7 1 227 36020677 36020899 3.810000e-64 255.0
10 TraesCS1A01G100800 chr2D 94.602 2223 81 24 681 2875 647524613 647522402 0.000000e+00 3404.0
11 TraesCS1A01G100800 chr2D 90.426 188 8 3 2683 2868 632318320 632318499 3.840000e-59 239.0
12 TraesCS1A01G100800 chr2D 86.522 230 8 8 17 227 637615915 637616140 6.420000e-57 231.0
13 TraesCS1A01G100800 chr2D 97.826 46 1 0 600 645 453704796 453704751 2.460000e-11 80.5
14 TraesCS1A01G100800 chr5A 97.944 1216 24 1 1653 2868 383829990 383831204 0.000000e+00 2106.0
15 TraesCS1A01G100800 chr5A 95.648 988 34 4 678 1661 383828587 383829569 0.000000e+00 1578.0
16 TraesCS1A01G100800 chr5A 92.035 339 25 2 232 569 520224537 520224874 2.690000e-130 475.0
17 TraesCS1A01G100800 chr5A 90.087 343 31 3 233 574 367334864 367334524 2.730000e-120 442.0
18 TraesCS1A01G100800 chr5A 89.676 339 29 2 232 569 185647319 185646986 7.630000e-116 427.0
19 TraesCS1A01G100800 chr5A 89.677 155 10 2 74 226 518241430 518241280 3.030000e-45 193.0
20 TraesCS1A01G100800 chr4B 93.541 1347 56 19 919 2234 223386473 223387819 0.000000e+00 1977.0
21 TraesCS1A01G100800 chr4B 89.954 657 15 14 2235 2868 223387947 223388575 0.000000e+00 800.0
22 TraesCS1A01G100800 chr7D 91.513 1249 50 24 677 1895 11127655 11126433 0.000000e+00 1668.0
23 TraesCS1A01G100800 chr7D 90.498 642 19 10 2235 2875 11125876 11125276 0.000000e+00 809.0
24 TraesCS1A01G100800 chr7D 88.439 346 34 2 228 572 49379631 49379291 2.140000e-111 412.0
25 TraesCS1A01G100800 chr7D 91.057 123 3 1 2866 2980 420059004 420058882 3.070000e-35 159.0
26 TraesCS1A01G100800 chr7D 92.500 40 2 1 116 154 503786678 503786717 4.150000e-04 56.5
27 TraesCS1A01G100800 chr1B 93.882 948 53 2 1292 2234 212662543 212661596 0.000000e+00 1424.0
28 TraesCS1A01G100800 chr1B 91.667 396 22 4 2235 2620 212661473 212661079 3.380000e-149 538.0
29 TraesCS1A01G100800 chr1B 86.420 243 17 8 1 227 72022121 72021879 4.930000e-63 252.0
30 TraesCS1A01G100800 chr1B 82.065 184 27 3 678 860 634164139 634164317 5.140000e-33 152.0
31 TraesCS1A01G100800 chr6A 92.059 340 25 2 232 569 578692399 578692738 7.470000e-131 477.0
32 TraesCS1A01G100800 chr6A 97.436 117 2 1 2865 2980 23059331 23059215 6.520000e-47 198.0
33 TraesCS1A01G100800 chr6A 97.436 117 2 1 2865 2980 23099935 23099819 6.520000e-47 198.0
34 TraesCS1A01G100800 chr6A 96.460 113 4 0 2868 2980 4515016 4514904 1.410000e-43 187.0
35 TraesCS1A01G100800 chr6A 89.600 125 11 2 2858 2980 192203791 192203667 1.110000e-34 158.0
36 TraesCS1A01G100800 chr4D 89.565 345 34 2 227 570 39240628 39240971 1.270000e-118 436.0
37 TraesCS1A01G100800 chr4D 100.000 30 0 0 650 679 479323971 479324000 4.150000e-04 56.5
38 TraesCS1A01G100800 chr7A 89.796 343 28 4 232 568 663275176 663274835 1.640000e-117 433.0
39 TraesCS1A01G100800 chr7A 93.893 131 6 2 2851 2980 250690066 250690195 2.340000e-46 196.0
40 TraesCS1A01G100800 chr7A 82.065 184 27 3 678 860 114679526 114679348 5.140000e-33 152.0
41 TraesCS1A01G100800 chr7A 83.117 154 17 6 76 227 120095841 120095695 6.700000e-27 132.0
42 TraesCS1A01G100800 chr2B 85.043 234 18 8 1 217 740741607 740741840 3.870000e-54 222.0
43 TraesCS1A01G100800 chr2B 84.804 204 8 9 3 187 560338516 560338317 1.820000e-42 183.0
44 TraesCS1A01G100800 chr2B 97.778 45 1 0 600 644 302926331 302926287 8.860000e-11 78.7
45 TraesCS1A01G100800 chr2B 90.164 61 5 1 168 227 545170877 545170937 8.860000e-11 78.7
46 TraesCS1A01G100800 chr5B 84.127 252 15 10 1 227 487338698 487338949 1.390000e-53 220.0
47 TraesCS1A01G100800 chr5B 79.762 252 17 14 1 227 56182824 56182582 5.140000e-33 152.0
48 TraesCS1A01G100800 chr5B 100.000 45 0 0 600 644 330620058 330620014 1.900000e-12 84.2
49 TraesCS1A01G100800 chr5B 97.826 46 1 0 600 645 32048526 32048481 2.460000e-11 80.5
50 TraesCS1A01G100800 chr1D 95.652 115 3 1 2868 2980 449679270 449679156 1.820000e-42 183.0
51 TraesCS1A01G100800 chr1D 94.595 37 1 1 643 678 433378466 433378430 4.150000e-04 56.5
52 TraesCS1A01G100800 chr7B 83.902 205 11 10 1 187 60849103 60848903 3.050000e-40 176.0
53 TraesCS1A01G100800 chr3B 83.744 203 16 10 1 189 746030312 746030113 3.050000e-40 176.0
54 TraesCS1A01G100800 chr3B 88.182 110 12 1 2868 2976 39569737 39569628 2.410000e-26 130.0
55 TraesCS1A01G100800 chr3B 87.611 113 13 1 2865 2976 792259794 792259906 2.410000e-26 130.0
56 TraesCS1A01G100800 chr6B 78.970 233 30 14 5 227 44816773 44816550 1.110000e-29 141.0
57 TraesCS1A01G100800 chr4A 82.099 162 23 3 679 839 451121106 451121262 1.860000e-27 134.0
58 TraesCS1A01G100800 chrUn 97.826 46 1 0 600 645 312484383 312484338 2.460000e-11 80.5
59 TraesCS1A01G100800 chrUn 97.826 46 1 0 600 645 369120933 369120888 2.460000e-11 80.5
60 TraesCS1A01G100800 chrUn 84.416 77 10 2 570 645 410949438 410949513 1.150000e-09 75.0
61 TraesCS1A01G100800 chrUn 84.000 75 12 0 570 644 473445533 473445607 4.120000e-09 73.1
62 TraesCS1A01G100800 chrUn 83.117 77 11 2 570 645 321746371 321746446 5.330000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G100800 chr1A 97161370 97164349 2979 True 5504.0 5504 100.0000 1 2980 1 chr1A.!!$R1 2979
1 TraesCS1A01G100800 chr3A 136525672 136527865 2193 True 3627.0 3627 96.5060 679 2875 1 chr3A.!!$R2 2196
2 TraesCS1A01G100800 chr2A 22589582 22591752 2170 False 3537.0 3537 95.9450 676 2868 1 chr2A.!!$F1 2192
3 TraesCS1A01G100800 chr2A 22627938 22630017 2079 False 3415.0 3415 96.1900 770 2867 1 chr2A.!!$F2 2097
4 TraesCS1A01G100800 chr2A 772956025 772958217 2192 False 3352.0 3352 94.3670 681 2868 1 chr2A.!!$F4 2187
5 TraesCS1A01G100800 chr2A 700235569 700237761 2192 True 3264.0 3264 93.7440 707 2875 1 chr2A.!!$R1 2168
6 TraesCS1A01G100800 chr2D 647522402 647524613 2211 True 3404.0 3404 94.6020 681 2875 1 chr2D.!!$R2 2194
7 TraesCS1A01G100800 chr5A 383828587 383831204 2617 False 1842.0 2106 96.7960 678 2868 2 chr5A.!!$F2 2190
8 TraesCS1A01G100800 chr4B 223386473 223388575 2102 False 1388.5 1977 91.7475 919 2868 2 chr4B.!!$F1 1949
9 TraesCS1A01G100800 chr7D 11125276 11127655 2379 True 1238.5 1668 91.0055 677 2875 2 chr7D.!!$R3 2198
10 TraesCS1A01G100800 chr1B 212661079 212662543 1464 True 981.0 1424 92.7745 1292 2620 2 chr1B.!!$R2 1328

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 172 0.035820 TTAACAGCGGGGCAGGTTAG 60.036 55.0 0.0 0.0 34.19 2.34 F
404 405 0.106669 ATTTAAGGAAGAGGCCCGGC 60.107 55.0 0.0 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1714 2212 1.070134 AGCAGTTCGTCCAACTTGCTA 59.930 47.619 9.2 0.0 43.38 3.49 R
2319 3040 4.268644 GTGGAAAGAACAGAAAGCAAAAGC 59.731 41.667 0.0 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.278956 CAAAGGGAGGAACGACGG 57.721 61.111 0.00 0.00 0.00 4.79
18 19 1.375523 CAAAGGGAGGAACGACGGG 60.376 63.158 0.00 0.00 0.00 5.28
19 20 2.590114 AAAGGGAGGAACGACGGGG 61.590 63.158 0.00 0.00 0.00 5.73
72 73 4.016706 CGGGAGGAACGGCAAGGT 62.017 66.667 0.00 0.00 0.00 3.50
73 74 2.359975 GGGAGGAACGGCAAGGTG 60.360 66.667 0.00 0.00 0.00 4.00
74 75 2.359975 GGAGGAACGGCAAGGTGG 60.360 66.667 0.00 0.00 0.00 4.61
75 76 2.359975 GAGGAACGGCAAGGTGGG 60.360 66.667 0.00 0.00 0.00 4.61
76 77 3.920093 GAGGAACGGCAAGGTGGGG 62.920 68.421 0.00 0.00 0.00 4.96
77 78 3.961414 GGAACGGCAAGGTGGGGA 61.961 66.667 0.00 0.00 0.00 4.81
78 79 2.114411 GAACGGCAAGGTGGGGAA 59.886 61.111 0.00 0.00 0.00 3.97
79 80 2.203437 AACGGCAAGGTGGGGAAC 60.203 61.111 0.00 0.00 0.00 3.62
80 81 2.692273 GAACGGCAAGGTGGGGAACT 62.692 60.000 0.00 0.00 0.00 3.01
81 82 2.672996 CGGCAAGGTGGGGAACTG 60.673 66.667 0.00 0.00 0.00 3.16
82 83 2.991540 GGCAAGGTGGGGAACTGC 60.992 66.667 0.00 0.00 0.00 4.40
83 84 2.991540 GCAAGGTGGGGAACTGCC 60.992 66.667 0.00 0.00 0.00 4.85
100 101 2.366167 CCAGGTGGGAGGAGGAGG 60.366 72.222 0.00 0.00 40.01 4.30
101 102 2.780693 CAGGTGGGAGGAGGAGGA 59.219 66.667 0.00 0.00 0.00 3.71
102 103 1.382420 CAGGTGGGAGGAGGAGGAG 60.382 68.421 0.00 0.00 0.00 3.69
103 104 2.041405 GGTGGGAGGAGGAGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
104 105 2.041405 GTGGGAGGAGGAGGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
105 106 3.368501 TGGGAGGAGGAGGAGGGG 61.369 72.222 0.00 0.00 0.00 4.79
106 107 4.179599 GGGAGGAGGAGGAGGGGG 62.180 77.778 0.00 0.00 0.00 5.40
126 127 3.461982 GAGAGTCGTGCGTGCGTG 61.462 66.667 1.25 0.00 0.00 5.34
137 138 4.879686 GTGCGTGCGTGCGTTGTT 62.880 61.111 3.11 0.00 37.81 2.83
138 139 4.877882 TGCGTGCGTGCGTTGTTG 62.878 61.111 3.11 0.00 37.81 3.33
140 141 4.230863 CGTGCGTGCGTTGTTGGT 62.231 61.111 0.00 0.00 0.00 3.67
141 142 2.872515 CGTGCGTGCGTTGTTGGTA 61.873 57.895 0.00 0.00 0.00 3.25
142 143 1.083015 GTGCGTGCGTTGTTGGTAG 60.083 57.895 0.00 0.00 0.00 3.18
143 144 1.227292 TGCGTGCGTTGTTGGTAGA 60.227 52.632 0.00 0.00 0.00 2.59
144 145 0.601576 TGCGTGCGTTGTTGGTAGAT 60.602 50.000 0.00 0.00 0.00 1.98
145 146 0.515564 GCGTGCGTTGTTGGTAGATT 59.484 50.000 0.00 0.00 0.00 2.40
146 147 1.069500 GCGTGCGTTGTTGGTAGATTT 60.069 47.619 0.00 0.00 0.00 2.17
147 148 2.834689 CGTGCGTTGTTGGTAGATTTC 58.165 47.619 0.00 0.00 0.00 2.17
148 149 2.478894 CGTGCGTTGTTGGTAGATTTCT 59.521 45.455 0.00 0.00 0.00 2.52
149 150 3.059188 CGTGCGTTGTTGGTAGATTTCTT 60.059 43.478 0.00 0.00 0.00 2.52
150 151 4.553938 CGTGCGTTGTTGGTAGATTTCTTT 60.554 41.667 0.00 0.00 0.00 2.52
151 152 5.278604 GTGCGTTGTTGGTAGATTTCTTTT 58.721 37.500 0.00 0.00 0.00 2.27
152 153 5.746721 GTGCGTTGTTGGTAGATTTCTTTTT 59.253 36.000 0.00 0.00 0.00 1.94
167 168 2.346597 TTTTTAACAGCGGGGCAGG 58.653 52.632 0.00 0.00 0.00 4.85
168 169 0.468400 TTTTTAACAGCGGGGCAGGT 60.468 50.000 0.00 0.00 0.00 4.00
169 170 0.468400 TTTTAACAGCGGGGCAGGTT 60.468 50.000 0.00 3.77 34.05 3.50
170 171 0.400975 TTTAACAGCGGGGCAGGTTA 59.599 50.000 0.00 2.21 32.44 2.85
171 172 0.035820 TTAACAGCGGGGCAGGTTAG 60.036 55.000 0.00 0.00 34.19 2.34
172 173 2.530958 TAACAGCGGGGCAGGTTAGC 62.531 60.000 0.00 0.00 32.44 3.09
176 177 3.458163 CGGGGCAGGTTAGCGAGA 61.458 66.667 0.00 0.00 34.64 4.04
177 178 2.187163 GGGGCAGGTTAGCGAGAC 59.813 66.667 0.00 0.00 34.64 3.36
178 179 2.359967 GGGGCAGGTTAGCGAGACT 61.360 63.158 0.00 0.00 34.64 3.24
179 180 1.597461 GGGCAGGTTAGCGAGACTT 59.403 57.895 0.00 0.00 34.64 3.01
180 181 0.822164 GGGCAGGTTAGCGAGACTTA 59.178 55.000 0.00 0.00 34.64 2.24
181 182 1.206371 GGGCAGGTTAGCGAGACTTAA 59.794 52.381 0.00 0.00 34.64 1.85
182 183 2.158943 GGGCAGGTTAGCGAGACTTAAT 60.159 50.000 0.00 0.00 34.64 1.40
183 184 2.866762 GGCAGGTTAGCGAGACTTAATG 59.133 50.000 0.00 0.00 34.64 1.90
184 185 2.285488 GCAGGTTAGCGAGACTTAATGC 59.715 50.000 0.00 0.00 0.00 3.56
185 186 2.535984 CAGGTTAGCGAGACTTAATGCG 59.464 50.000 0.00 0.00 0.00 4.73
186 187 2.165845 AGGTTAGCGAGACTTAATGCGT 59.834 45.455 0.00 0.00 0.00 5.24
187 188 2.281762 GGTTAGCGAGACTTAATGCGTG 59.718 50.000 0.00 0.00 0.00 5.34
188 189 2.203800 TAGCGAGACTTAATGCGTGG 57.796 50.000 0.00 0.00 0.00 4.94
189 190 1.084370 AGCGAGACTTAATGCGTGGC 61.084 55.000 0.00 0.00 0.00 5.01
190 191 1.084370 GCGAGACTTAATGCGTGGCT 61.084 55.000 0.00 0.00 0.00 4.75
191 192 1.359848 CGAGACTTAATGCGTGGCTT 58.640 50.000 0.00 0.00 0.00 4.35
192 193 1.061131 CGAGACTTAATGCGTGGCTTG 59.939 52.381 0.00 0.00 0.00 4.01
193 194 2.076863 GAGACTTAATGCGTGGCTTGT 58.923 47.619 0.00 0.00 0.00 3.16
194 195 2.484264 GAGACTTAATGCGTGGCTTGTT 59.516 45.455 0.00 0.00 0.00 2.83
195 196 2.226437 AGACTTAATGCGTGGCTTGTTG 59.774 45.455 0.00 0.00 0.00 3.33
196 197 1.269448 ACTTAATGCGTGGCTTGTTGG 59.731 47.619 0.00 0.00 0.00 3.77
197 198 0.600557 TTAATGCGTGGCTTGTTGGG 59.399 50.000 0.00 0.00 0.00 4.12
198 199 0.538516 TAATGCGTGGCTTGTTGGGT 60.539 50.000 0.00 0.00 0.00 4.51
199 200 1.398958 AATGCGTGGCTTGTTGGGTT 61.399 50.000 0.00 0.00 0.00 4.11
200 201 0.538516 ATGCGTGGCTTGTTGGGTTA 60.539 50.000 0.00 0.00 0.00 2.85
201 202 0.752009 TGCGTGGCTTGTTGGGTTAA 60.752 50.000 0.00 0.00 0.00 2.01
202 203 0.386113 GCGTGGCTTGTTGGGTTAAA 59.614 50.000 0.00 0.00 0.00 1.52
203 204 1.866471 GCGTGGCTTGTTGGGTTAAAC 60.866 52.381 0.00 0.00 0.00 2.01
204 205 1.405821 CGTGGCTTGTTGGGTTAAACA 59.594 47.619 0.00 0.00 38.26 2.83
205 206 2.796735 CGTGGCTTGTTGGGTTAAACAC 60.797 50.000 0.00 0.00 39.70 3.32
206 207 1.757699 TGGCTTGTTGGGTTAAACACC 59.242 47.619 0.00 0.00 46.46 4.16
224 225 3.558674 CGGAGGATTATGGGCCATC 57.441 57.895 25.07 10.03 0.00 3.51
225 226 0.692476 CGGAGGATTATGGGCCATCA 59.308 55.000 25.07 13.57 0.00 3.07
226 227 1.339438 CGGAGGATTATGGGCCATCAG 60.339 57.143 25.07 5.20 0.00 2.90
227 228 1.707427 GGAGGATTATGGGCCATCAGT 59.293 52.381 25.07 10.24 0.00 3.41
228 229 2.912956 GGAGGATTATGGGCCATCAGTA 59.087 50.000 25.07 1.52 0.00 2.74
229 230 3.054802 GGAGGATTATGGGCCATCAGTAG 60.055 52.174 25.07 0.00 0.00 2.57
230 231 3.584848 GAGGATTATGGGCCATCAGTAGT 59.415 47.826 25.07 1.25 0.00 2.73
231 232 3.584848 AGGATTATGGGCCATCAGTAGTC 59.415 47.826 25.07 11.52 0.00 2.59
232 233 3.307762 GGATTATGGGCCATCAGTAGTCC 60.308 52.174 25.07 16.90 0.00 3.85
233 234 2.795291 TATGGGCCATCAGTAGTCCT 57.205 50.000 25.07 0.00 0.00 3.85
234 235 1.135094 ATGGGCCATCAGTAGTCCTG 58.865 55.000 14.78 0.00 42.97 3.86
235 236 0.982852 TGGGCCATCAGTAGTCCTGG 60.983 60.000 0.00 0.00 41.83 4.45
236 237 4.865865 GCCATCAGTAGTCCTGGC 57.134 61.111 4.54 4.54 46.54 4.85
237 238 1.147153 GCCATCAGTAGTCCTGGCC 59.853 63.158 0.00 0.00 46.76 5.36
238 239 1.626356 GCCATCAGTAGTCCTGGCCA 61.626 60.000 4.71 4.71 46.76 5.36
239 240 1.135094 CCATCAGTAGTCCTGGCCAT 58.865 55.000 5.51 0.00 41.83 4.40
240 241 1.202734 CCATCAGTAGTCCTGGCCATG 60.203 57.143 5.51 2.84 41.83 3.66
241 242 1.135094 ATCAGTAGTCCTGGCCATGG 58.865 55.000 5.51 7.63 41.83 3.66
242 243 0.982852 TCAGTAGTCCTGGCCATGGG 60.983 60.000 15.13 4.96 41.83 4.00
284 285 2.748647 CGACCCGGCCCGAAAAAT 60.749 61.111 3.71 0.00 0.00 1.82
285 286 2.757056 CGACCCGGCCCGAAAAATC 61.757 63.158 3.71 0.00 0.00 2.17
286 287 2.361992 ACCCGGCCCGAAAAATCC 60.362 61.111 3.71 0.00 0.00 3.01
287 288 3.144871 CCCGGCCCGAAAAATCCC 61.145 66.667 3.71 0.00 0.00 3.85
288 289 2.361865 CCGGCCCGAAAAATCCCA 60.362 61.111 3.71 0.00 0.00 4.37
289 290 1.979693 CCGGCCCGAAAAATCCCAA 60.980 57.895 3.71 0.00 0.00 4.12
290 291 1.214325 CGGCCCGAAAAATCCCAAC 59.786 57.895 0.00 0.00 0.00 3.77
291 292 1.594833 GGCCCGAAAAATCCCAACC 59.405 57.895 0.00 0.00 0.00 3.77
292 293 1.594833 GCCCGAAAAATCCCAACCC 59.405 57.895 0.00 0.00 0.00 4.11
293 294 1.887301 CCCGAAAAATCCCAACCCG 59.113 57.895 0.00 0.00 0.00 5.28
294 295 1.600511 CCCGAAAAATCCCAACCCGG 61.601 60.000 0.00 0.00 35.68 5.73
295 296 1.214325 CGAAAAATCCCAACCCGGC 59.786 57.895 0.00 0.00 0.00 6.13
296 297 1.594833 GAAAAATCCCAACCCGGCC 59.405 57.895 0.00 0.00 0.00 6.13
297 298 1.895020 GAAAAATCCCAACCCGGCCC 61.895 60.000 0.00 0.00 0.00 5.80
298 299 4.751820 AAATCCCAACCCGGCCCG 62.752 66.667 0.00 0.00 0.00 6.13
314 315 4.096003 CGGCCCGACCTTGTCCAT 62.096 66.667 0.00 0.00 35.61 3.41
315 316 2.438434 GGCCCGACCTTGTCCATG 60.438 66.667 0.00 0.00 34.51 3.66
316 317 2.438434 GCCCGACCTTGTCCATGG 60.438 66.667 4.97 4.97 0.00 3.66
317 318 2.438434 CCCGACCTTGTCCATGGC 60.438 66.667 6.96 2.72 0.00 4.40
318 319 2.438434 CCGACCTTGTCCATGGCC 60.438 66.667 6.96 0.00 0.00 5.36
319 320 2.350895 CGACCTTGTCCATGGCCA 59.649 61.111 8.56 8.56 0.00 5.36
320 321 1.746615 CGACCTTGTCCATGGCCAG 60.747 63.158 13.05 3.10 0.00 4.85
321 322 1.379044 GACCTTGTCCATGGCCAGG 60.379 63.158 13.05 12.17 0.00 4.45
322 323 2.757099 CCTTGTCCATGGCCAGGC 60.757 66.667 13.13 1.26 0.00 4.85
323 324 2.357836 CTTGTCCATGGCCAGGCT 59.642 61.111 13.13 0.00 0.00 4.58
324 325 1.751927 CTTGTCCATGGCCAGGCTC 60.752 63.158 13.13 7.49 0.00 4.70
325 326 3.626996 TTGTCCATGGCCAGGCTCG 62.627 63.158 13.13 0.00 0.00 5.03
326 327 4.864334 GTCCATGGCCAGGCTCGG 62.864 72.222 13.13 9.66 0.00 4.63
338 339 3.905249 GCTCGGGCCTAGGTTTTG 58.095 61.111 11.31 0.00 0.00 2.44
339 340 1.298667 GCTCGGGCCTAGGTTTTGA 59.701 57.895 11.31 2.96 0.00 2.69
340 341 0.744771 GCTCGGGCCTAGGTTTTGAG 60.745 60.000 11.31 13.25 0.00 3.02
341 342 0.744771 CTCGGGCCTAGGTTTTGAGC 60.745 60.000 11.31 0.00 0.00 4.26
342 343 1.749258 CGGGCCTAGGTTTTGAGCC 60.749 63.158 11.31 2.81 43.09 4.70
343 344 4.338815 GGCCTAGGTTTTGAGCCC 57.661 61.111 11.31 0.00 37.66 5.19
344 345 1.749258 GGCCTAGGTTTTGAGCCCG 60.749 63.158 11.31 0.00 37.66 6.13
345 346 1.298667 GCCTAGGTTTTGAGCCCGA 59.701 57.895 11.31 0.00 0.00 5.14
346 347 0.322187 GCCTAGGTTTTGAGCCCGAA 60.322 55.000 11.31 0.00 0.00 4.30
347 348 1.739067 CCTAGGTTTTGAGCCCGAAG 58.261 55.000 0.00 0.00 0.00 3.79
348 349 1.087501 CTAGGTTTTGAGCCCGAAGC 58.912 55.000 0.00 0.00 44.25 3.86
349 350 0.322187 TAGGTTTTGAGCCCGAAGCC 60.322 55.000 0.00 0.00 45.47 4.35
350 351 2.636412 GGTTTTGAGCCCGAAGCCC 61.636 63.158 0.00 0.00 45.47 5.19
351 352 2.671619 TTTTGAGCCCGAAGCCCG 60.672 61.111 0.00 0.00 45.47 6.13
381 382 3.138128 CCCGGGCCCGTCAATTTC 61.138 66.667 40.52 0.93 37.81 2.17
382 383 2.360600 CCGGGCCCGTCAATTTCA 60.361 61.111 40.52 0.00 37.81 2.69
383 384 1.752694 CCGGGCCCGTCAATTTCAT 60.753 57.895 40.52 0.00 37.81 2.57
384 385 1.724582 CCGGGCCCGTCAATTTCATC 61.725 60.000 40.52 0.00 37.81 2.92
385 386 1.029408 CGGGCCCGTCAATTTCATCA 61.029 55.000 36.64 0.00 34.35 3.07
386 387 1.402787 GGGCCCGTCAATTTCATCAT 58.597 50.000 5.69 0.00 0.00 2.45
387 388 1.756538 GGGCCCGTCAATTTCATCATT 59.243 47.619 5.69 0.00 0.00 2.57
388 389 2.168313 GGGCCCGTCAATTTCATCATTT 59.832 45.455 5.69 0.00 0.00 2.32
389 390 3.383185 GGGCCCGTCAATTTCATCATTTA 59.617 43.478 5.69 0.00 0.00 1.40
390 391 4.142049 GGGCCCGTCAATTTCATCATTTAA 60.142 41.667 5.69 0.00 0.00 1.52
391 392 5.043248 GGCCCGTCAATTTCATCATTTAAG 58.957 41.667 0.00 0.00 0.00 1.85
392 393 5.043248 GCCCGTCAATTTCATCATTTAAGG 58.957 41.667 0.00 0.00 0.00 2.69
393 394 5.163561 GCCCGTCAATTTCATCATTTAAGGA 60.164 40.000 0.00 0.00 0.00 3.36
394 395 6.627065 GCCCGTCAATTTCATCATTTAAGGAA 60.627 38.462 0.00 0.00 0.00 3.36
395 396 6.974622 CCCGTCAATTTCATCATTTAAGGAAG 59.025 38.462 0.00 0.00 0.00 3.46
396 397 7.148086 CCCGTCAATTTCATCATTTAAGGAAGA 60.148 37.037 0.00 0.00 0.00 2.87
397 398 7.912250 CCGTCAATTTCATCATTTAAGGAAGAG 59.088 37.037 0.00 0.00 0.00 2.85
398 399 7.912250 CGTCAATTTCATCATTTAAGGAAGAGG 59.088 37.037 0.00 0.00 0.00 3.69
399 400 7.704047 GTCAATTTCATCATTTAAGGAAGAGGC 59.296 37.037 0.00 0.00 0.00 4.70
400 401 6.721704 ATTTCATCATTTAAGGAAGAGGCC 57.278 37.500 0.00 0.00 0.00 5.19
401 402 4.170468 TCATCATTTAAGGAAGAGGCCC 57.830 45.455 0.00 0.00 0.00 5.80
402 403 2.710096 TCATTTAAGGAAGAGGCCCG 57.290 50.000 0.00 0.00 0.00 6.13
403 404 1.211949 TCATTTAAGGAAGAGGCCCGG 59.788 52.381 0.00 0.00 0.00 5.73
404 405 0.106669 ATTTAAGGAAGAGGCCCGGC 60.107 55.000 0.00 0.00 0.00 6.13
438 439 2.993937 CCCAACGGGCTTTTAGTATGA 58.006 47.619 0.00 0.00 35.35 2.15
439 440 3.551846 CCCAACGGGCTTTTAGTATGAT 58.448 45.455 0.00 0.00 35.35 2.45
440 441 3.315191 CCCAACGGGCTTTTAGTATGATG 59.685 47.826 0.00 0.00 35.35 3.07
441 442 3.315191 CCAACGGGCTTTTAGTATGATGG 59.685 47.826 0.00 0.00 0.00 3.51
442 443 3.208747 ACGGGCTTTTAGTATGATGGG 57.791 47.619 0.00 0.00 0.00 4.00
443 444 1.880027 CGGGCTTTTAGTATGATGGGC 59.120 52.381 0.00 0.00 0.00 5.36
444 445 2.487265 CGGGCTTTTAGTATGATGGGCT 60.487 50.000 0.00 0.00 0.00 5.19
445 446 2.887152 GGGCTTTTAGTATGATGGGCTG 59.113 50.000 0.00 0.00 0.00 4.85
446 447 2.887152 GGCTTTTAGTATGATGGGCTGG 59.113 50.000 0.00 0.00 0.00 4.85
447 448 2.887152 GCTTTTAGTATGATGGGCTGGG 59.113 50.000 0.00 0.00 0.00 4.45
448 449 2.656947 TTTAGTATGATGGGCTGGGC 57.343 50.000 0.00 0.00 0.00 5.36
449 450 1.819753 TTAGTATGATGGGCTGGGCT 58.180 50.000 0.00 0.00 0.00 5.19
450 451 1.352083 TAGTATGATGGGCTGGGCTC 58.648 55.000 0.00 0.00 0.00 4.70
451 452 1.302033 GTATGATGGGCTGGGCTCG 60.302 63.158 0.00 0.00 0.00 5.03
452 453 2.519622 TATGATGGGCTGGGCTCGG 61.520 63.158 0.00 0.00 0.00 4.63
466 467 4.968370 TCGGGCCCGATTTTTAGG 57.032 55.556 42.66 12.44 44.01 2.69
467 468 1.452470 TCGGGCCCGATTTTTAGGC 60.452 57.895 42.66 0.00 44.01 3.93
470 471 3.116463 GCCCGATTTTTAGGCCCG 58.884 61.111 0.00 0.00 41.00 6.13
471 472 1.452470 GCCCGATTTTTAGGCCCGA 60.452 57.895 0.00 0.00 41.00 5.14
472 473 1.721664 GCCCGATTTTTAGGCCCGAC 61.722 60.000 0.00 0.00 41.00 4.79
473 474 1.433837 CCCGATTTTTAGGCCCGACG 61.434 60.000 0.00 0.00 0.00 5.12
474 475 1.433837 CCGATTTTTAGGCCCGACGG 61.434 60.000 6.99 6.99 0.00 4.79
506 507 2.600470 GCTCGGGCCTGGGTTTTT 60.600 61.111 14.54 0.00 0.00 1.94
523 524 3.320673 TTTTTGCGTCAGGTTTTGGTT 57.679 38.095 0.00 0.00 0.00 3.67
524 525 2.285827 TTTGCGTCAGGTTTTGGTTG 57.714 45.000 0.00 0.00 0.00 3.77
525 526 0.457851 TTGCGTCAGGTTTTGGTTGG 59.542 50.000 0.00 0.00 0.00 3.77
526 527 1.299850 GCGTCAGGTTTTGGTTGGC 60.300 57.895 0.00 0.00 0.00 4.52
527 528 1.362355 CGTCAGGTTTTGGTTGGCC 59.638 57.895 0.00 0.00 0.00 5.36
528 529 1.745890 GTCAGGTTTTGGTTGGCCC 59.254 57.895 0.00 0.00 0.00 5.80
529 530 1.045911 GTCAGGTTTTGGTTGGCCCA 61.046 55.000 0.00 0.00 43.27 5.36
530 531 0.758685 TCAGGTTTTGGTTGGCCCAG 60.759 55.000 0.00 0.00 46.31 4.45
531 532 2.140138 AGGTTTTGGTTGGCCCAGC 61.140 57.895 0.00 0.00 46.31 4.85
558 559 2.190578 GGCCTGACCCGAGGAATG 59.809 66.667 0.00 0.00 34.69 2.67
559 560 2.190578 GCCTGACCCGAGGAATGG 59.809 66.667 0.00 0.00 34.69 3.16
560 561 2.190578 CCTGACCCGAGGAATGGC 59.809 66.667 0.00 0.00 34.69 4.40
561 562 2.190578 CTGACCCGAGGAATGGCC 59.809 66.667 0.00 0.00 0.00 5.36
562 563 2.609299 TGACCCGAGGAATGGCCA 60.609 61.111 8.56 8.56 40.02 5.36
563 564 2.190578 GACCCGAGGAATGGCCAG 59.809 66.667 13.05 0.00 40.02 4.85
564 565 3.406595 GACCCGAGGAATGGCCAGG 62.407 68.421 13.05 7.59 40.02 4.45
565 566 3.411517 CCCGAGGAATGGCCAGGT 61.412 66.667 13.05 0.12 40.02 4.00
566 567 2.070039 CCCGAGGAATGGCCAGGTA 61.070 63.158 13.05 0.00 40.02 3.08
567 568 1.418908 CCCGAGGAATGGCCAGGTAT 61.419 60.000 13.05 0.00 40.02 2.73
568 569 1.348064 CCGAGGAATGGCCAGGTATA 58.652 55.000 13.05 0.00 40.02 1.47
569 570 1.276421 CCGAGGAATGGCCAGGTATAG 59.724 57.143 13.05 0.92 40.02 1.31
570 571 1.338200 CGAGGAATGGCCAGGTATAGC 60.338 57.143 13.05 0.00 40.02 2.97
582 583 6.199937 GCCAGGTATAGCCATCAAATATTG 57.800 41.667 0.00 0.00 40.61 1.90
583 584 5.711976 GCCAGGTATAGCCATCAAATATTGT 59.288 40.000 0.00 0.00 40.61 2.71
584 585 6.884295 GCCAGGTATAGCCATCAAATATTGTA 59.116 38.462 0.00 0.00 40.61 2.41
585 586 7.066284 GCCAGGTATAGCCATCAAATATTGTAG 59.934 40.741 0.00 0.00 40.61 2.74
586 587 8.321353 CCAGGTATAGCCATCAAATATTGTAGA 58.679 37.037 0.00 0.00 40.61 2.59
587 588 9.896645 CAGGTATAGCCATCAAATATTGTAGAT 57.103 33.333 0.00 0.00 40.61 1.98
588 589 9.896645 AGGTATAGCCATCAAATATTGTAGATG 57.103 33.333 14.34 14.34 40.61 2.90
595 596 7.496529 CATCAAATATTGTAGATGGACGGTT 57.503 36.000 13.81 0.00 35.42 4.44
596 597 8.601845 CATCAAATATTGTAGATGGACGGTTA 57.398 34.615 13.81 0.00 35.42 2.85
597 598 9.051679 CATCAAATATTGTAGATGGACGGTTAA 57.948 33.333 13.81 0.00 35.42 2.01
598 599 9.621629 ATCAAATATTGTAGATGGACGGTTAAA 57.378 29.630 0.00 0.00 0.00 1.52
599 600 9.451002 TCAAATATTGTAGATGGACGGTTAAAA 57.549 29.630 0.00 0.00 0.00 1.52
603 604 7.696992 ATTGTAGATGGACGGTTAAAATTGT 57.303 32.000 0.00 0.00 0.00 2.71
604 605 7.513371 TTGTAGATGGACGGTTAAAATTGTT 57.487 32.000 0.00 0.00 0.00 2.83
605 606 7.513371 TGTAGATGGACGGTTAAAATTGTTT 57.487 32.000 0.00 0.00 0.00 2.83
606 607 7.364200 TGTAGATGGACGGTTAAAATTGTTTG 58.636 34.615 0.00 0.00 0.00 2.93
607 608 5.778862 AGATGGACGGTTAAAATTGTTTGG 58.221 37.500 0.00 0.00 0.00 3.28
608 609 5.536916 AGATGGACGGTTAAAATTGTTTGGA 59.463 36.000 0.00 0.00 0.00 3.53
609 610 5.793030 TGGACGGTTAAAATTGTTTGGAT 57.207 34.783 0.00 0.00 0.00 3.41
610 611 5.774630 TGGACGGTTAAAATTGTTTGGATC 58.225 37.500 0.00 0.00 0.00 3.36
611 612 5.536916 TGGACGGTTAAAATTGTTTGGATCT 59.463 36.000 0.00 0.00 0.00 2.75
612 613 5.861787 GGACGGTTAAAATTGTTTGGATCTG 59.138 40.000 0.00 0.00 0.00 2.90
613 614 6.399639 ACGGTTAAAATTGTTTGGATCTGT 57.600 33.333 0.00 0.00 0.00 3.41
614 615 6.443792 ACGGTTAAAATTGTTTGGATCTGTC 58.556 36.000 0.00 0.00 0.00 3.51
615 616 5.861787 CGGTTAAAATTGTTTGGATCTGTCC 59.138 40.000 0.00 0.00 45.31 4.02
616 617 6.163476 GGTTAAAATTGTTTGGATCTGTCCC 58.837 40.000 0.00 0.00 44.41 4.46
617 618 6.014584 GGTTAAAATTGTTTGGATCTGTCCCT 60.015 38.462 0.00 0.00 44.41 4.20
618 619 5.728637 AAAATTGTTTGGATCTGTCCCTC 57.271 39.130 0.00 0.00 44.41 4.30
619 620 4.664688 AATTGTTTGGATCTGTCCCTCT 57.335 40.909 0.00 0.00 44.41 3.69
620 621 4.664688 ATTGTTTGGATCTGTCCCTCTT 57.335 40.909 0.00 0.00 44.41 2.85
621 622 4.453480 TTGTTTGGATCTGTCCCTCTTT 57.547 40.909 0.00 0.00 44.41 2.52
622 623 4.453480 TGTTTGGATCTGTCCCTCTTTT 57.547 40.909 0.00 0.00 44.41 2.27
623 624 4.803452 TGTTTGGATCTGTCCCTCTTTTT 58.197 39.130 0.00 0.00 44.41 1.94
624 625 4.827284 TGTTTGGATCTGTCCCTCTTTTTC 59.173 41.667 0.00 0.00 44.41 2.29
625 626 5.073428 GTTTGGATCTGTCCCTCTTTTTCT 58.927 41.667 0.00 0.00 44.41 2.52
626 627 5.324832 TTGGATCTGTCCCTCTTTTTCTT 57.675 39.130 0.00 0.00 44.41 2.52
627 628 5.324832 TGGATCTGTCCCTCTTTTTCTTT 57.675 39.130 0.00 0.00 44.41 2.52
628 629 5.705400 TGGATCTGTCCCTCTTTTTCTTTT 58.295 37.500 0.00 0.00 44.41 2.27
629 630 6.848069 TGGATCTGTCCCTCTTTTTCTTTTA 58.152 36.000 0.00 0.00 44.41 1.52
630 631 7.470192 TGGATCTGTCCCTCTTTTTCTTTTAT 58.530 34.615 0.00 0.00 44.41 1.40
631 632 8.611257 TGGATCTGTCCCTCTTTTTCTTTTATA 58.389 33.333 0.00 0.00 44.41 0.98
632 633 9.114952 GGATCTGTCCCTCTTTTTCTTTTATAG 57.885 37.037 0.00 0.00 38.69 1.31
633 634 9.674068 GATCTGTCCCTCTTTTTCTTTTATAGT 57.326 33.333 0.00 0.00 0.00 2.12
634 635 8.848474 TCTGTCCCTCTTTTTCTTTTATAGTG 57.152 34.615 0.00 0.00 0.00 2.74
635 636 7.883311 TCTGTCCCTCTTTTTCTTTTATAGTGG 59.117 37.037 0.00 0.00 0.00 4.00
636 637 7.523415 TGTCCCTCTTTTTCTTTTATAGTGGT 58.477 34.615 0.00 0.00 0.00 4.16
637 638 8.662255 TGTCCCTCTTTTTCTTTTATAGTGGTA 58.338 33.333 0.00 0.00 0.00 3.25
638 639 9.163899 GTCCCTCTTTTTCTTTTATAGTGGTAG 57.836 37.037 0.00 0.00 0.00 3.18
639 640 8.887393 TCCCTCTTTTTCTTTTATAGTGGTAGT 58.113 33.333 0.00 0.00 0.00 2.73
674 675 9.857957 ATTTACTTTTGTTTACACTTCCGAAAA 57.142 25.926 0.00 0.00 0.00 2.29
675 676 9.857957 TTTACTTTTGTTTACACTTCCGAAAAT 57.142 25.926 0.00 0.00 0.00 1.82
704 705 7.174599 TCTCTACCTACTAATAAACCAGCGATC 59.825 40.741 0.00 0.00 0.00 3.69
705 706 4.868067 ACCTACTAATAAACCAGCGATCG 58.132 43.478 11.69 11.69 0.00 3.69
780 782 1.734465 CAGAATTCAACTCGCAGTCCC 59.266 52.381 8.44 0.00 0.00 4.46
831 836 5.326200 TCGTTTTTGCAAAAGAAACCCTA 57.674 34.783 22.78 4.75 28.68 3.53
851 856 8.577164 ACCCTATACTTTGGTATATTCAACCT 57.423 34.615 0.00 0.00 39.34 3.50
1087 1126 3.997397 TTGTGCGGCGACCTAGCA 61.997 61.111 12.98 0.00 39.27 3.49
1174 1213 0.687354 GAAGTCCTTGCAGGTGGAGA 59.313 55.000 5.57 0.00 36.53 3.71
1238 1307 0.253630 TCCTACCCATCCAGCCCTTT 60.254 55.000 0.00 0.00 0.00 3.11
1283 1352 1.039233 CCTACGCGGGGTAAGAAGGA 61.039 60.000 12.47 0.00 0.00 3.36
1326 1395 2.107565 AGCCCCCTCCTAGCCCTAT 61.108 63.158 0.00 0.00 0.00 2.57
1532 1601 6.015519 CAGTTTAGTCAATCAAACCCATTCCA 60.016 38.462 0.00 0.00 35.66 3.53
1714 2212 4.227864 CCTTTTGATTAGGAGGCAGTCT 57.772 45.455 0.00 0.00 34.56 3.24
2089 2682 5.968676 TCCAACCTATTAAGCAGTACCAT 57.031 39.130 0.00 0.00 0.00 3.55
2367 3088 7.335422 ACAAGCTTCTGTAGGTTCAAATGATAG 59.665 37.037 0.00 0.00 42.49 2.08
2647 3421 3.907894 TGCGGGAAAGTTGTATTTGAC 57.092 42.857 0.00 0.00 0.00 3.18
2768 3543 8.958043 GTTATGAATTTTGTGATAATCTTCGGC 58.042 33.333 0.00 0.00 0.00 5.54
2868 3643 6.809630 TTGGGCCTTGCATTTTTAAATTAC 57.190 33.333 4.53 0.00 0.00 1.89
2870 3645 7.246171 TGGGCCTTGCATTTTTAAATTACTA 57.754 32.000 4.53 0.00 0.00 1.82
2872 3647 8.325046 TGGGCCTTGCATTTTTAAATTACTATT 58.675 29.630 4.53 0.00 0.00 1.73
2873 3648 9.173021 GGGCCTTGCATTTTTAAATTACTATTT 57.827 29.630 0.84 0.00 37.68 1.40
2874 3649 9.986833 GGCCTTGCATTTTTAAATTACTATTTG 57.013 29.630 0.00 0.00 35.61 2.32
2882 3657 8.934507 TTTTTAAATTACTATTTGATGCCCCG 57.065 30.769 0.00 0.00 35.61 5.73
2883 3658 4.584327 AAATTACTATTTGATGCCCCGC 57.416 40.909 0.00 0.00 32.79 6.13
2884 3659 1.588674 TTACTATTTGATGCCCCGCG 58.411 50.000 0.00 0.00 0.00 6.46
2885 3660 0.882927 TACTATTTGATGCCCCGCGC 60.883 55.000 0.00 0.00 38.31 6.86
2886 3661 3.240606 CTATTTGATGCCCCGCGCG 62.241 63.158 25.67 25.67 42.08 6.86
2901 3676 2.258286 GCGTTGCTGCGGGAATTT 59.742 55.556 1.67 0.00 0.00 1.82
2902 3677 2.088178 GCGTTGCTGCGGGAATTTG 61.088 57.895 1.67 0.00 0.00 2.32
2903 3678 1.285641 CGTTGCTGCGGGAATTTGT 59.714 52.632 1.67 0.00 0.00 2.83
2904 3679 0.318614 CGTTGCTGCGGGAATTTGTT 60.319 50.000 1.67 0.00 0.00 2.83
2905 3680 1.139163 GTTGCTGCGGGAATTTGTTG 58.861 50.000 1.67 0.00 0.00 3.33
2906 3681 0.749649 TTGCTGCGGGAATTTGTTGT 59.250 45.000 0.00 0.00 0.00 3.32
2907 3682 0.031857 TGCTGCGGGAATTTGTTGTG 59.968 50.000 0.00 0.00 0.00 3.33
2908 3683 0.667184 GCTGCGGGAATTTGTTGTGG 60.667 55.000 0.00 0.00 0.00 4.17
2909 3684 0.958091 CTGCGGGAATTTGTTGTGGA 59.042 50.000 0.00 0.00 0.00 4.02
2910 3685 1.545582 CTGCGGGAATTTGTTGTGGAT 59.454 47.619 0.00 0.00 0.00 3.41
2911 3686 1.967066 TGCGGGAATTTGTTGTGGATT 59.033 42.857 0.00 0.00 0.00 3.01
2912 3687 2.366916 TGCGGGAATTTGTTGTGGATTT 59.633 40.909 0.00 0.00 0.00 2.17
2913 3688 2.993220 GCGGGAATTTGTTGTGGATTTC 59.007 45.455 0.00 0.00 0.00 2.17
2914 3689 3.306019 GCGGGAATTTGTTGTGGATTTCT 60.306 43.478 0.00 0.00 0.00 2.52
2915 3690 4.082463 GCGGGAATTTGTTGTGGATTTCTA 60.082 41.667 0.00 0.00 0.00 2.10
2916 3691 5.565834 GCGGGAATTTGTTGTGGATTTCTAA 60.566 40.000 0.00 0.00 0.00 2.10
2917 3692 6.092748 CGGGAATTTGTTGTGGATTTCTAAG 58.907 40.000 0.00 0.00 0.00 2.18
2918 3693 6.294508 CGGGAATTTGTTGTGGATTTCTAAGT 60.295 38.462 0.00 0.00 0.00 2.24
2919 3694 7.094549 CGGGAATTTGTTGTGGATTTCTAAGTA 60.095 37.037 0.00 0.00 0.00 2.24
2920 3695 8.581578 GGGAATTTGTTGTGGATTTCTAAGTAA 58.418 33.333 0.00 0.00 0.00 2.24
2921 3696 9.406828 GGAATTTGTTGTGGATTTCTAAGTAAC 57.593 33.333 0.00 0.00 0.00 2.50
2924 3699 9.965824 ATTTGTTGTGGATTTCTAAGTAACTTG 57.034 29.630 0.00 0.00 0.00 3.16
2925 3700 8.740123 TTGTTGTGGATTTCTAAGTAACTTGA 57.260 30.769 0.00 0.00 0.00 3.02
2926 3701 8.740123 TGTTGTGGATTTCTAAGTAACTTGAA 57.260 30.769 0.00 0.00 0.00 2.69
2927 3702 8.617809 TGTTGTGGATTTCTAAGTAACTTGAAC 58.382 33.333 0.00 0.00 0.00 3.18
2928 3703 8.617809 GTTGTGGATTTCTAAGTAACTTGAACA 58.382 33.333 0.00 0.00 0.00 3.18
2929 3704 8.740123 TGTGGATTTCTAAGTAACTTGAACAA 57.260 30.769 0.00 0.00 0.00 2.83
2930 3705 9.179909 TGTGGATTTCTAAGTAACTTGAACAAA 57.820 29.630 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.375523 CCCGTCGTTCCTCCCTTTG 60.376 63.158 0.00 0.00 0.00 2.77
1 2 2.590114 CCCCGTCGTTCCTCCCTTT 61.590 63.158 0.00 0.00 0.00 3.11
2 3 3.001406 CCCCGTCGTTCCTCCCTT 61.001 66.667 0.00 0.00 0.00 3.95
55 56 4.016706 ACCTTGCCGTTCCTCCCG 62.017 66.667 0.00 0.00 0.00 5.14
56 57 2.359975 CACCTTGCCGTTCCTCCC 60.360 66.667 0.00 0.00 0.00 4.30
57 58 2.359975 CCACCTTGCCGTTCCTCC 60.360 66.667 0.00 0.00 0.00 4.30
58 59 2.359975 CCCACCTTGCCGTTCCTC 60.360 66.667 0.00 0.00 0.00 3.71
59 60 3.966543 CCCCACCTTGCCGTTCCT 61.967 66.667 0.00 0.00 0.00 3.36
60 61 3.501040 TTCCCCACCTTGCCGTTCC 62.501 63.158 0.00 0.00 0.00 3.62
61 62 2.114411 TTCCCCACCTTGCCGTTC 59.886 61.111 0.00 0.00 0.00 3.95
62 63 2.203437 GTTCCCCACCTTGCCGTT 60.203 61.111 0.00 0.00 0.00 4.44
63 64 3.175710 AGTTCCCCACCTTGCCGT 61.176 61.111 0.00 0.00 0.00 5.68
64 65 2.672996 CAGTTCCCCACCTTGCCG 60.673 66.667 0.00 0.00 0.00 5.69
65 66 2.991540 GCAGTTCCCCACCTTGCC 60.992 66.667 0.00 0.00 0.00 4.52
66 67 2.991540 GGCAGTTCCCCACCTTGC 60.992 66.667 0.00 0.00 0.00 4.01
83 84 2.366167 CCTCCTCCTCCCACCTGG 60.366 72.222 0.00 0.00 0.00 4.45
84 85 1.382420 CTCCTCCTCCTCCCACCTG 60.382 68.421 0.00 0.00 0.00 4.00
85 86 2.641746 CCTCCTCCTCCTCCCACCT 61.642 68.421 0.00 0.00 0.00 4.00
86 87 2.041405 CCTCCTCCTCCTCCCACC 60.041 72.222 0.00 0.00 0.00 4.61
87 88 2.041405 CCCTCCTCCTCCTCCCAC 60.041 72.222 0.00 0.00 0.00 4.61
88 89 3.368501 CCCCTCCTCCTCCTCCCA 61.369 72.222 0.00 0.00 0.00 4.37
89 90 4.179599 CCCCCTCCTCCTCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
109 110 3.461982 CACGCACGCACGACTCTC 61.462 66.667 4.54 0.00 36.70 3.20
120 121 4.879686 AACAACGCACGCACGCAC 62.880 61.111 0.00 0.00 36.19 5.34
121 122 4.877882 CAACAACGCACGCACGCA 62.878 61.111 0.00 0.00 36.19 5.24
123 124 2.742317 CTACCAACAACGCACGCACG 62.742 60.000 0.00 0.00 39.50 5.34
124 125 1.083015 CTACCAACAACGCACGCAC 60.083 57.895 0.00 0.00 0.00 5.34
125 126 0.601576 ATCTACCAACAACGCACGCA 60.602 50.000 0.00 0.00 0.00 5.24
126 127 0.515564 AATCTACCAACAACGCACGC 59.484 50.000 0.00 0.00 0.00 5.34
127 128 2.478894 AGAAATCTACCAACAACGCACG 59.521 45.455 0.00 0.00 0.00 5.34
128 129 4.483476 AAGAAATCTACCAACAACGCAC 57.517 40.909 0.00 0.00 0.00 5.34
129 130 5.508200 AAAAGAAATCTACCAACAACGCA 57.492 34.783 0.00 0.00 0.00 5.24
149 150 0.468400 ACCTGCCCCGCTGTTAAAAA 60.468 50.000 0.00 0.00 0.00 1.94
150 151 0.468400 AACCTGCCCCGCTGTTAAAA 60.468 50.000 0.00 0.00 0.00 1.52
151 152 0.400975 TAACCTGCCCCGCTGTTAAA 59.599 50.000 0.00 0.00 0.00 1.52
152 153 0.035820 CTAACCTGCCCCGCTGTTAA 60.036 55.000 0.00 0.00 30.79 2.01
153 154 1.600107 CTAACCTGCCCCGCTGTTA 59.400 57.895 0.00 0.00 0.00 2.41
154 155 2.351276 CTAACCTGCCCCGCTGTT 59.649 61.111 0.00 0.00 0.00 3.16
155 156 4.410400 GCTAACCTGCCCCGCTGT 62.410 66.667 0.00 0.00 0.00 4.40
159 160 3.458163 TCTCGCTAACCTGCCCCG 61.458 66.667 0.00 0.00 0.00 5.73
160 161 1.900545 AAGTCTCGCTAACCTGCCCC 61.901 60.000 0.00 0.00 0.00 5.80
161 162 0.822164 TAAGTCTCGCTAACCTGCCC 59.178 55.000 0.00 0.00 0.00 5.36
162 163 2.667473 TTAAGTCTCGCTAACCTGCC 57.333 50.000 0.00 0.00 0.00 4.85
163 164 2.285488 GCATTAAGTCTCGCTAACCTGC 59.715 50.000 0.00 0.00 0.00 4.85
164 165 2.535984 CGCATTAAGTCTCGCTAACCTG 59.464 50.000 0.00 0.00 0.00 4.00
165 166 2.165845 ACGCATTAAGTCTCGCTAACCT 59.834 45.455 0.00 0.00 0.00 3.50
166 167 2.281762 CACGCATTAAGTCTCGCTAACC 59.718 50.000 0.00 0.00 0.00 2.85
167 168 2.281762 CCACGCATTAAGTCTCGCTAAC 59.718 50.000 0.00 0.00 0.00 2.34
168 169 2.536365 CCACGCATTAAGTCTCGCTAA 58.464 47.619 0.00 0.00 0.00 3.09
169 170 1.801395 GCCACGCATTAAGTCTCGCTA 60.801 52.381 0.00 0.00 0.00 4.26
170 171 1.084370 GCCACGCATTAAGTCTCGCT 61.084 55.000 0.00 0.00 0.00 4.93
171 172 1.084370 AGCCACGCATTAAGTCTCGC 61.084 55.000 0.00 0.00 0.00 5.03
172 173 1.061131 CAAGCCACGCATTAAGTCTCG 59.939 52.381 0.00 0.00 0.00 4.04
173 174 2.076863 ACAAGCCACGCATTAAGTCTC 58.923 47.619 0.00 0.00 0.00 3.36
174 175 2.185004 ACAAGCCACGCATTAAGTCT 57.815 45.000 0.00 0.00 0.00 3.24
175 176 2.584791 CAACAAGCCACGCATTAAGTC 58.415 47.619 0.00 0.00 0.00 3.01
176 177 1.269448 CCAACAAGCCACGCATTAAGT 59.731 47.619 0.00 0.00 0.00 2.24
177 178 1.402720 CCCAACAAGCCACGCATTAAG 60.403 52.381 0.00 0.00 0.00 1.85
178 179 0.600557 CCCAACAAGCCACGCATTAA 59.399 50.000 0.00 0.00 0.00 1.40
179 180 0.538516 ACCCAACAAGCCACGCATTA 60.539 50.000 0.00 0.00 0.00 1.90
180 181 1.398958 AACCCAACAAGCCACGCATT 61.399 50.000 0.00 0.00 0.00 3.56
181 182 0.538516 TAACCCAACAAGCCACGCAT 60.539 50.000 0.00 0.00 0.00 4.73
182 183 0.752009 TTAACCCAACAAGCCACGCA 60.752 50.000 0.00 0.00 0.00 5.24
183 184 0.386113 TTTAACCCAACAAGCCACGC 59.614 50.000 0.00 0.00 0.00 5.34
184 185 1.405821 TGTTTAACCCAACAAGCCACG 59.594 47.619 0.00 0.00 33.60 4.94
185 186 2.482316 GGTGTTTAACCCAACAAGCCAC 60.482 50.000 0.00 0.00 44.02 5.01
186 187 1.757699 GGTGTTTAACCCAACAAGCCA 59.242 47.619 0.00 0.00 44.02 4.75
187 188 2.519377 GGTGTTTAACCCAACAAGCC 57.481 50.000 0.00 0.00 44.02 4.35
196 197 3.881089 CCATAATCCTCCGGTGTTTAACC 59.119 47.826 0.00 0.00 46.60 2.85
197 198 3.881089 CCCATAATCCTCCGGTGTTTAAC 59.119 47.826 0.00 0.00 0.00 2.01
198 199 3.686120 GCCCATAATCCTCCGGTGTTTAA 60.686 47.826 0.00 0.00 0.00 1.52
199 200 2.158726 GCCCATAATCCTCCGGTGTTTA 60.159 50.000 0.00 0.00 0.00 2.01
200 201 1.409661 GCCCATAATCCTCCGGTGTTT 60.410 52.381 0.00 0.00 0.00 2.83
201 202 0.182775 GCCCATAATCCTCCGGTGTT 59.817 55.000 0.00 0.00 0.00 3.32
202 203 1.705997 GGCCCATAATCCTCCGGTGT 61.706 60.000 0.00 0.00 0.00 4.16
203 204 1.073199 GGCCCATAATCCTCCGGTG 59.927 63.158 0.00 0.00 0.00 4.94
204 205 0.772124 ATGGCCCATAATCCTCCGGT 60.772 55.000 0.00 0.00 0.00 5.28
205 206 0.035056 GATGGCCCATAATCCTCCGG 60.035 60.000 0.00 0.00 0.00 5.14
206 207 0.692476 TGATGGCCCATAATCCTCCG 59.308 55.000 0.00 0.00 0.00 4.63
207 208 1.707427 ACTGATGGCCCATAATCCTCC 59.293 52.381 0.00 0.00 0.00 4.30
208 209 3.584848 ACTACTGATGGCCCATAATCCTC 59.415 47.826 0.00 0.00 0.00 3.71
209 210 3.584848 GACTACTGATGGCCCATAATCCT 59.415 47.826 0.00 0.00 0.00 3.24
210 211 3.307762 GGACTACTGATGGCCCATAATCC 60.308 52.174 0.00 0.00 0.00 3.01
211 212 3.584848 AGGACTACTGATGGCCCATAATC 59.415 47.826 0.00 0.00 0.00 1.75
212 213 3.602608 AGGACTACTGATGGCCCATAAT 58.397 45.455 0.00 0.00 0.00 1.28
213 214 3.060479 AGGACTACTGATGGCCCATAA 57.940 47.619 0.00 0.00 0.00 1.90
214 215 2.795291 AGGACTACTGATGGCCCATA 57.205 50.000 0.00 0.00 0.00 2.74
215 216 3.662865 AGGACTACTGATGGCCCAT 57.337 52.632 0.00 0.00 0.00 4.00
224 225 2.615227 GCCCATGGCCAGGACTACTG 62.615 65.000 21.32 6.06 44.06 2.74
225 226 2.378634 GCCCATGGCCAGGACTACT 61.379 63.158 21.32 0.00 44.06 2.57
226 227 2.193248 GCCCATGGCCAGGACTAC 59.807 66.667 21.32 0.65 44.06 2.73
267 268 2.748647 ATTTTTCGGGCCGGGTCG 60.749 61.111 27.98 1.04 0.00 4.79
268 269 2.412323 GGATTTTTCGGGCCGGGTC 61.412 63.158 27.98 15.89 0.00 4.46
269 270 2.361992 GGATTTTTCGGGCCGGGT 60.362 61.111 27.98 7.64 0.00 5.28
270 271 3.144871 GGGATTTTTCGGGCCGGG 61.145 66.667 27.98 0.00 0.00 5.73
271 272 1.979693 TTGGGATTTTTCGGGCCGG 60.980 57.895 27.98 7.65 0.00 6.13
272 273 1.214325 GTTGGGATTTTTCGGGCCG 59.786 57.895 22.51 22.51 0.00 6.13
273 274 1.594833 GGTTGGGATTTTTCGGGCC 59.405 57.895 0.00 0.00 0.00 5.80
274 275 1.594833 GGGTTGGGATTTTTCGGGC 59.405 57.895 0.00 0.00 0.00 6.13
275 276 1.600511 CCGGGTTGGGATTTTTCGGG 61.601 60.000 0.00 0.00 33.27 5.14
276 277 1.887301 CCGGGTTGGGATTTTTCGG 59.113 57.895 0.00 0.00 0.00 4.30
277 278 1.214325 GCCGGGTTGGGATTTTTCG 59.786 57.895 2.18 0.00 38.63 3.46
278 279 1.594833 GGCCGGGTTGGGATTTTTC 59.405 57.895 2.18 0.00 38.63 2.29
279 280 1.916273 GGGCCGGGTTGGGATTTTT 60.916 57.895 2.18 0.00 38.63 1.94
280 281 2.284331 GGGCCGGGTTGGGATTTT 60.284 61.111 2.18 0.00 38.63 1.82
281 282 4.751820 CGGGCCGGGTTGGGATTT 62.752 66.667 20.56 0.00 38.63 2.17
297 298 4.096003 ATGGACAAGGTCGGGCCG 62.096 66.667 22.51 22.51 43.70 6.13
298 299 2.438434 CATGGACAAGGTCGGGCC 60.438 66.667 0.00 0.00 32.65 5.80
299 300 2.438434 CCATGGACAAGGTCGGGC 60.438 66.667 5.56 0.00 32.65 6.13
300 301 2.438434 GCCATGGACAAGGTCGGG 60.438 66.667 18.40 0.00 32.65 5.14
301 302 2.438434 GGCCATGGACAAGGTCGG 60.438 66.667 18.40 0.00 32.65 4.79
302 303 1.746615 CTGGCCATGGACAAGGTCG 60.747 63.158 23.71 5.41 32.65 4.79
303 304 1.379044 CCTGGCCATGGACAAGGTC 60.379 63.158 23.71 0.00 29.81 3.85
304 305 2.765969 CCTGGCCATGGACAAGGT 59.234 61.111 23.71 0.00 29.81 3.50
305 306 2.757099 GCCTGGCCATGGACAAGG 60.757 66.667 23.71 24.15 29.81 3.61
306 307 1.751927 GAGCCTGGCCATGGACAAG 60.752 63.158 23.71 17.92 29.81 3.16
307 308 2.356278 GAGCCTGGCCATGGACAA 59.644 61.111 23.71 5.58 29.81 3.18
308 309 4.100084 CGAGCCTGGCCATGGACA 62.100 66.667 22.03 22.03 0.00 4.02
309 310 4.864334 CCGAGCCTGGCCATGGAC 62.864 72.222 18.40 15.32 0.00 4.02
321 322 0.744771 CTCAAAACCTAGGCCCGAGC 60.745 60.000 9.30 0.00 38.76 5.03
322 323 0.744771 GCTCAAAACCTAGGCCCGAG 60.745 60.000 9.30 10.89 0.00 4.63
323 324 1.298667 GCTCAAAACCTAGGCCCGA 59.701 57.895 9.30 0.00 0.00 5.14
324 325 1.749258 GGCTCAAAACCTAGGCCCG 60.749 63.158 9.30 0.00 37.12 6.13
325 326 4.338815 GGCTCAAAACCTAGGCCC 57.661 61.111 9.30 0.00 37.12 5.80
327 328 0.322187 TTCGGGCTCAAAACCTAGGC 60.322 55.000 9.30 0.00 37.55 3.93
328 329 1.739067 CTTCGGGCTCAAAACCTAGG 58.261 55.000 7.41 7.41 0.00 3.02
329 330 1.087501 GCTTCGGGCTCAAAACCTAG 58.912 55.000 0.00 0.00 38.06 3.02
330 331 0.322187 GGCTTCGGGCTCAAAACCTA 60.322 55.000 1.83 0.00 41.46 3.08
331 332 1.603739 GGCTTCGGGCTCAAAACCT 60.604 57.895 1.83 0.00 41.46 3.50
332 333 2.636412 GGGCTTCGGGCTCAAAACC 61.636 63.158 1.83 0.00 42.01 3.27
333 334 2.962569 GGGCTTCGGGCTCAAAAC 59.037 61.111 1.83 0.00 42.01 2.43
334 335 2.671619 CGGGCTTCGGGCTCAAAA 60.672 61.111 2.50 0.00 42.70 2.44
364 365 3.138128 GAAATTGACGGGCCCGGG 61.138 66.667 44.99 22.37 44.69 5.73
365 366 1.724582 GATGAAATTGACGGGCCCGG 61.725 60.000 44.99 28.13 44.69 5.73
366 367 1.029408 TGATGAAATTGACGGGCCCG 61.029 55.000 42.17 42.17 46.03 6.13
367 368 1.402787 ATGATGAAATTGACGGGCCC 58.597 50.000 13.57 13.57 0.00 5.80
368 369 3.525268 AAATGATGAAATTGACGGGCC 57.475 42.857 0.00 0.00 0.00 5.80
369 370 5.043248 CCTTAAATGATGAAATTGACGGGC 58.957 41.667 0.00 0.00 0.00 6.13
370 371 6.449635 TCCTTAAATGATGAAATTGACGGG 57.550 37.500 0.00 0.00 0.00 5.28
371 372 7.761409 TCTTCCTTAAATGATGAAATTGACGG 58.239 34.615 0.00 0.00 0.00 4.79
372 373 7.912250 CCTCTTCCTTAAATGATGAAATTGACG 59.088 37.037 0.00 0.00 0.00 4.35
373 374 7.704047 GCCTCTTCCTTAAATGATGAAATTGAC 59.296 37.037 0.00 0.00 0.00 3.18
374 375 7.147846 GGCCTCTTCCTTAAATGATGAAATTGA 60.148 37.037 0.00 0.00 0.00 2.57
375 376 6.982724 GGCCTCTTCCTTAAATGATGAAATTG 59.017 38.462 0.00 0.00 0.00 2.32
376 377 6.098838 GGGCCTCTTCCTTAAATGATGAAATT 59.901 38.462 0.84 0.00 0.00 1.82
377 378 5.600069 GGGCCTCTTCCTTAAATGATGAAAT 59.400 40.000 0.84 0.00 0.00 2.17
378 379 4.956075 GGGCCTCTTCCTTAAATGATGAAA 59.044 41.667 0.84 0.00 0.00 2.69
379 380 4.536765 GGGCCTCTTCCTTAAATGATGAA 58.463 43.478 0.84 0.00 0.00 2.57
380 381 3.433598 CGGGCCTCTTCCTTAAATGATGA 60.434 47.826 0.84 0.00 0.00 2.92
381 382 2.880890 CGGGCCTCTTCCTTAAATGATG 59.119 50.000 0.84 0.00 0.00 3.07
382 383 2.158608 CCGGGCCTCTTCCTTAAATGAT 60.159 50.000 0.84 0.00 0.00 2.45
383 384 1.211949 CCGGGCCTCTTCCTTAAATGA 59.788 52.381 0.84 0.00 0.00 2.57
384 385 1.680338 CCGGGCCTCTTCCTTAAATG 58.320 55.000 0.84 0.00 0.00 2.32
385 386 0.106669 GCCGGGCCTCTTCCTTAAAT 60.107 55.000 8.12 0.00 0.00 1.40
386 387 1.301954 GCCGGGCCTCTTCCTTAAA 59.698 57.895 8.12 0.00 0.00 1.52
387 388 2.676265 GGCCGGGCCTCTTCCTTAA 61.676 63.158 30.86 0.00 46.69 1.85
388 389 3.087906 GGCCGGGCCTCTTCCTTA 61.088 66.667 30.86 0.00 46.69 2.69
419 420 3.315191 CCATCATACTAAAAGCCCGTTGG 59.685 47.826 0.00 0.00 0.00 3.77
420 421 3.315191 CCCATCATACTAAAAGCCCGTTG 59.685 47.826 0.00 0.00 0.00 4.10
421 422 3.551846 CCCATCATACTAAAAGCCCGTT 58.448 45.455 0.00 0.00 0.00 4.44
422 423 2.748465 GCCCATCATACTAAAAGCCCGT 60.748 50.000 0.00 0.00 0.00 5.28
423 424 1.880027 GCCCATCATACTAAAAGCCCG 59.120 52.381 0.00 0.00 0.00 6.13
424 425 2.887152 CAGCCCATCATACTAAAAGCCC 59.113 50.000 0.00 0.00 0.00 5.19
425 426 2.887152 CCAGCCCATCATACTAAAAGCC 59.113 50.000 0.00 0.00 0.00 4.35
426 427 2.887152 CCCAGCCCATCATACTAAAAGC 59.113 50.000 0.00 0.00 0.00 3.51
427 428 2.887152 GCCCAGCCCATCATACTAAAAG 59.113 50.000 0.00 0.00 0.00 2.27
428 429 2.513738 AGCCCAGCCCATCATACTAAAA 59.486 45.455 0.00 0.00 0.00 1.52
429 430 2.106511 GAGCCCAGCCCATCATACTAAA 59.893 50.000 0.00 0.00 0.00 1.85
430 431 1.699634 GAGCCCAGCCCATCATACTAA 59.300 52.381 0.00 0.00 0.00 2.24
431 432 1.352083 GAGCCCAGCCCATCATACTA 58.648 55.000 0.00 0.00 0.00 1.82
432 433 1.762522 CGAGCCCAGCCCATCATACT 61.763 60.000 0.00 0.00 0.00 2.12
433 434 1.302033 CGAGCCCAGCCCATCATAC 60.302 63.158 0.00 0.00 0.00 2.39
434 435 2.519622 CCGAGCCCAGCCCATCATA 61.520 63.158 0.00 0.00 0.00 2.15
435 436 3.882326 CCGAGCCCAGCCCATCAT 61.882 66.667 0.00 0.00 0.00 2.45
450 451 3.116463 GCCTAAAAATCGGGCCCG 58.884 61.111 39.13 39.13 39.96 6.13
453 454 1.452470 TCGGGCCTAAAAATCGGGC 60.452 57.895 0.84 0.00 44.59 6.13
454 455 1.433837 CGTCGGGCCTAAAAATCGGG 61.434 60.000 0.84 0.00 0.00 5.14
455 456 1.433837 CCGTCGGGCCTAAAAATCGG 61.434 60.000 2.34 4.24 0.00 4.18
456 457 2.011453 CCGTCGGGCCTAAAAATCG 58.989 57.895 2.34 0.00 0.00 3.34
489 490 2.600470 AAAAACCCAGGCCCGAGC 60.600 61.111 0.00 0.00 38.76 5.03
503 504 2.996621 CAACCAAAACCTGACGCAAAAA 59.003 40.909 0.00 0.00 0.00 1.94
504 505 2.611518 CAACCAAAACCTGACGCAAAA 58.388 42.857 0.00 0.00 0.00 2.44
505 506 1.134965 CCAACCAAAACCTGACGCAAA 60.135 47.619 0.00 0.00 0.00 3.68
506 507 0.457851 CCAACCAAAACCTGACGCAA 59.542 50.000 0.00 0.00 0.00 4.85
507 508 2.010582 GCCAACCAAAACCTGACGCA 62.011 55.000 0.00 0.00 0.00 5.24
508 509 1.299850 GCCAACCAAAACCTGACGC 60.300 57.895 0.00 0.00 0.00 5.19
509 510 1.362355 GGCCAACCAAAACCTGACG 59.638 57.895 0.00 0.00 35.26 4.35
510 511 1.745890 GGGCCAACCAAAACCTGAC 59.254 57.895 4.39 0.00 39.85 3.51
511 512 4.286447 GGGCCAACCAAAACCTGA 57.714 55.556 4.39 0.00 39.85 3.86
540 541 3.470888 ATTCCTCGGGTCAGGCCG 61.471 66.667 0.00 0.00 38.44 6.13
541 542 2.190578 CATTCCTCGGGTCAGGCC 59.809 66.667 0.00 0.00 32.91 5.19
542 543 2.190578 CCATTCCTCGGGTCAGGC 59.809 66.667 0.00 0.00 32.91 4.85
543 544 2.190578 GCCATTCCTCGGGTCAGG 59.809 66.667 0.00 0.00 34.40 3.86
544 545 2.190578 GGCCATTCCTCGGGTCAG 59.809 66.667 0.00 0.00 0.00 3.51
545 546 2.609299 TGGCCATTCCTCGGGTCA 60.609 61.111 0.00 0.00 36.19 4.02
546 547 2.190578 CTGGCCATTCCTCGGGTC 59.809 66.667 5.51 0.00 35.26 4.46
547 548 2.833151 TACCTGGCCATTCCTCGGGT 62.833 60.000 5.51 11.24 37.00 5.28
548 549 1.418908 ATACCTGGCCATTCCTCGGG 61.419 60.000 5.51 4.26 35.26 5.14
549 550 1.276421 CTATACCTGGCCATTCCTCGG 59.724 57.143 5.51 5.16 35.26 4.63
550 551 1.338200 GCTATACCTGGCCATTCCTCG 60.338 57.143 5.51 0.00 35.26 4.63
551 552 2.481289 GCTATACCTGGCCATTCCTC 57.519 55.000 5.51 0.00 35.26 3.71
559 560 5.711976 ACAATATTTGATGGCTATACCTGGC 59.288 40.000 0.00 0.00 40.22 4.85
560 561 8.321353 TCTACAATATTTGATGGCTATACCTGG 58.679 37.037 0.00 0.00 40.22 4.45
561 562 9.896645 ATCTACAATATTTGATGGCTATACCTG 57.103 33.333 0.00 0.00 40.22 4.00
562 563 9.896645 CATCTACAATATTTGATGGCTATACCT 57.103 33.333 11.89 0.00 40.22 3.08
563 564 9.113838 CCATCTACAATATTTGATGGCTATACC 57.886 37.037 20.06 0.00 46.00 2.73
571 572 7.496529 AACCGTCCATCTACAATATTTGATG 57.503 36.000 12.42 12.42 36.87 3.07
572 573 9.621629 TTTAACCGTCCATCTACAATATTTGAT 57.378 29.630 0.00 0.00 0.00 2.57
573 574 9.451002 TTTTAACCGTCCATCTACAATATTTGA 57.549 29.630 0.00 0.00 0.00 2.69
577 578 9.403583 ACAATTTTAACCGTCCATCTACAATAT 57.596 29.630 0.00 0.00 0.00 1.28
578 579 8.795842 ACAATTTTAACCGTCCATCTACAATA 57.204 30.769 0.00 0.00 0.00 1.90
579 580 7.696992 ACAATTTTAACCGTCCATCTACAAT 57.303 32.000 0.00 0.00 0.00 2.71
580 581 7.513371 AACAATTTTAACCGTCCATCTACAA 57.487 32.000 0.00 0.00 0.00 2.41
581 582 7.364200 CAAACAATTTTAACCGTCCATCTACA 58.636 34.615 0.00 0.00 0.00 2.74
582 583 6.804783 CCAAACAATTTTAACCGTCCATCTAC 59.195 38.462 0.00 0.00 0.00 2.59
583 584 6.715718 TCCAAACAATTTTAACCGTCCATCTA 59.284 34.615 0.00 0.00 0.00 1.98
584 585 5.536916 TCCAAACAATTTTAACCGTCCATCT 59.463 36.000 0.00 0.00 0.00 2.90
585 586 5.774630 TCCAAACAATTTTAACCGTCCATC 58.225 37.500 0.00 0.00 0.00 3.51
586 587 5.793030 TCCAAACAATTTTAACCGTCCAT 57.207 34.783 0.00 0.00 0.00 3.41
587 588 5.536916 AGATCCAAACAATTTTAACCGTCCA 59.463 36.000 0.00 0.00 0.00 4.02
588 589 5.861787 CAGATCCAAACAATTTTAACCGTCC 59.138 40.000 0.00 0.00 0.00 4.79
589 590 6.443792 ACAGATCCAAACAATTTTAACCGTC 58.556 36.000 0.00 0.00 0.00 4.79
590 591 6.399639 ACAGATCCAAACAATTTTAACCGT 57.600 33.333 0.00 0.00 0.00 4.83
591 592 5.861787 GGACAGATCCAAACAATTTTAACCG 59.138 40.000 0.00 0.00 45.47 4.44
606 607 7.946381 ATAAAAGAAAAAGAGGGACAGATCC 57.054 36.000 0.00 0.00 45.42 3.36
607 608 9.674068 ACTATAAAAGAAAAAGAGGGACAGATC 57.326 33.333 0.00 0.00 0.00 2.75
608 609 9.454859 CACTATAAAAGAAAAAGAGGGACAGAT 57.545 33.333 0.00 0.00 0.00 2.90
609 610 7.883311 CCACTATAAAAGAAAAAGAGGGACAGA 59.117 37.037 0.00 0.00 0.00 3.41
610 611 7.665974 ACCACTATAAAAGAAAAAGAGGGACAG 59.334 37.037 0.00 0.00 0.00 3.51
611 612 7.523415 ACCACTATAAAAGAAAAAGAGGGACA 58.477 34.615 0.00 0.00 0.00 4.02
612 613 7.997773 ACCACTATAAAAGAAAAAGAGGGAC 57.002 36.000 0.00 0.00 0.00 4.46
613 614 8.887393 ACTACCACTATAAAAGAAAAAGAGGGA 58.113 33.333 0.00 0.00 0.00 4.20
648 649 9.857957 TTTTCGGAAGTGTAAACAAAAGTAAAT 57.142 25.926 0.00 0.00 0.00 1.40
649 650 9.857957 ATTTTCGGAAGTGTAAACAAAAGTAAA 57.142 25.926 0.00 0.00 0.00 2.01
650 651 9.857957 AATTTTCGGAAGTGTAAACAAAAGTAA 57.142 25.926 0.00 0.00 0.00 2.24
655 656 9.887406 GAGATAATTTTCGGAAGTGTAAACAAA 57.113 29.630 0.00 0.00 0.00 2.83
656 657 9.280174 AGAGATAATTTTCGGAAGTGTAAACAA 57.720 29.630 0.00 0.00 0.00 2.83
657 658 8.842358 AGAGATAATTTTCGGAAGTGTAAACA 57.158 30.769 0.00 0.00 0.00 2.83
659 660 9.374838 GGTAGAGATAATTTTCGGAAGTGTAAA 57.625 33.333 0.00 0.00 0.00 2.01
660 661 8.755977 AGGTAGAGATAATTTTCGGAAGTGTAA 58.244 33.333 0.00 0.00 0.00 2.41
661 662 8.302515 AGGTAGAGATAATTTTCGGAAGTGTA 57.697 34.615 0.00 0.00 0.00 2.90
662 663 7.184067 AGGTAGAGATAATTTTCGGAAGTGT 57.816 36.000 0.00 0.00 0.00 3.55
663 664 8.414778 AGTAGGTAGAGATAATTTTCGGAAGTG 58.585 37.037 0.00 0.00 0.00 3.16
664 665 8.536340 AGTAGGTAGAGATAATTTTCGGAAGT 57.464 34.615 0.00 0.00 0.00 3.01
675 676 8.790718 CGCTGGTTTATTAGTAGGTAGAGATAA 58.209 37.037 0.00 0.00 0.00 1.75
704 705 0.914551 CGTACGACCAGAAGCAATCG 59.085 55.000 10.44 0.00 40.39 3.34
705 706 1.918609 GACGTACGACCAGAAGCAATC 59.081 52.381 24.41 0.00 0.00 2.67
831 836 6.861065 CGCAGGTTGAATATACCAAAGTAT 57.139 37.500 0.00 0.00 42.05 2.12
851 856 0.821517 AATCAGACGTATGGACCGCA 59.178 50.000 10.78 0.00 0.00 5.69
1174 1213 2.259818 CTCTGCTTCGACGCCTGT 59.740 61.111 11.76 0.00 0.00 4.00
1283 1352 2.362503 TCCACCTCGCGTGATCCT 60.363 61.111 10.21 0.00 46.20 3.24
1326 1395 1.827399 GAAAGGAGGCCTCACCGTGA 61.827 60.000 33.29 0.29 46.52 4.35
1532 1601 6.633500 TTGTACAAGTAAAAGAGCAGCATT 57.367 33.333 3.59 0.00 0.00 3.56
1591 1660 3.188460 GCGCTTAATCTTTGAGACACCAA 59.812 43.478 0.00 0.00 0.00 3.67
1623 1692 2.397815 AGGCAGGCCTGACCATAAA 58.602 52.632 35.74 0.00 46.22 1.40
1714 2212 1.070134 AGCAGTTCGTCCAACTTGCTA 59.930 47.619 9.20 0.00 43.38 3.49
1901 2490 5.105752 CACGAGTTCCTCTTCATCTTTAGG 58.894 45.833 0.00 0.00 0.00 2.69
2089 2682 8.918202 AACAACAGATTCTCCTGTAATTTGTA 57.082 30.769 0.00 0.00 45.82 2.41
2319 3040 4.268644 GTGGAAAGAACAGAAAGCAAAAGC 59.731 41.667 0.00 0.00 0.00 3.51
2367 3088 8.418662 AGTCTTAAGGTCCCAAAATTTAACAAC 58.581 33.333 1.85 0.00 0.00 3.32
2451 3201 4.157289 GCCAGAGCTTTCTGAATCATCAAA 59.843 41.667 4.59 0.00 39.99 2.69
2637 3391 5.329399 AGCCAAGGTTATGGTCAAATACAA 58.671 37.500 0.00 0.00 42.75 2.41
2647 3421 4.734398 TGCATTTAAGCCAAGGTTATGG 57.266 40.909 0.00 0.00 43.70 2.74
2868 3643 2.639286 GCGCGGGGCATCAAATAG 59.361 61.111 8.83 0.00 42.87 1.73
2884 3659 2.088178 CAAATTCCCGCAGCAACGC 61.088 57.895 0.00 0.00 0.00 4.84
2885 3660 0.318614 AACAAATTCCCGCAGCAACG 60.319 50.000 0.00 0.00 0.00 4.10
2886 3661 1.139163 CAACAAATTCCCGCAGCAAC 58.861 50.000 0.00 0.00 0.00 4.17
2887 3662 0.749649 ACAACAAATTCCCGCAGCAA 59.250 45.000 0.00 0.00 0.00 3.91
2888 3663 0.031857 CACAACAAATTCCCGCAGCA 59.968 50.000 0.00 0.00 0.00 4.41
2889 3664 0.667184 CCACAACAAATTCCCGCAGC 60.667 55.000 0.00 0.00 0.00 5.25
2890 3665 0.958091 TCCACAACAAATTCCCGCAG 59.042 50.000 0.00 0.00 0.00 5.18
2891 3666 1.626686 ATCCACAACAAATTCCCGCA 58.373 45.000 0.00 0.00 0.00 5.69
2892 3667 2.741759 AATCCACAACAAATTCCCGC 57.258 45.000 0.00 0.00 0.00 6.13
2893 3668 4.519540 AGAAATCCACAACAAATTCCCG 57.480 40.909 0.00 0.00 0.00 5.14
2894 3669 6.993079 ACTTAGAAATCCACAACAAATTCCC 58.007 36.000 0.00 0.00 0.00 3.97
2895 3670 9.406828 GTTACTTAGAAATCCACAACAAATTCC 57.593 33.333 0.00 0.00 0.00 3.01
2898 3673 9.965824 CAAGTTACTTAGAAATCCACAACAAAT 57.034 29.630 0.00 0.00 0.00 2.32
2899 3674 9.179909 TCAAGTTACTTAGAAATCCACAACAAA 57.820 29.630 0.00 0.00 0.00 2.83
2900 3675 8.740123 TCAAGTTACTTAGAAATCCACAACAA 57.260 30.769 0.00 0.00 0.00 2.83
2901 3676 8.617809 GTTCAAGTTACTTAGAAATCCACAACA 58.382 33.333 0.00 0.00 0.00 3.33
2902 3677 8.617809 TGTTCAAGTTACTTAGAAATCCACAAC 58.382 33.333 0.00 0.00 0.00 3.32
2903 3678 8.740123 TGTTCAAGTTACTTAGAAATCCACAA 57.260 30.769 0.00 0.00 0.00 3.33
2904 3679 8.740123 TTGTTCAAGTTACTTAGAAATCCACA 57.260 30.769 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.