Multiple sequence alignment - TraesCS1A01G100500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G100500 chr1A 100.000 3857 0 0 1 3857 96478738 96474882 0.000000e+00 7123.0
1 TraesCS1A01G100500 chr1B 93.750 2720 125 14 912 3591 123961826 123964540 0.000000e+00 4039.0
2 TraesCS1A01G100500 chr1B 89.299 271 28 1 3585 3855 449552615 449552346 4.770000e-89 339.0
3 TraesCS1A01G100500 chr1B 89.259 270 27 2 3587 3855 553454122 553453854 1.720000e-88 337.0
4 TraesCS1A01G100500 chr1D 95.744 2138 84 5 912 3042 78975253 78977390 0.000000e+00 3437.0
5 TraesCS1A01G100500 chr1D 86.700 406 9 12 2973 3340 78977387 78977785 3.590000e-110 409.0
6 TraesCS1A01G100500 chr1D 87.773 229 12 6 3372 3591 78978886 78979107 1.780000e-63 254.0
7 TraesCS1A01G100500 chr7A 94.221 796 39 3 1 792 552452579 552451787 0.000000e+00 1208.0
8 TraesCS1A01G100500 chr7A 94.103 797 37 8 1 790 690375729 690374936 0.000000e+00 1203.0
9 TraesCS1A01G100500 chr7A 93.977 797 41 5 1 792 103107334 103106540 0.000000e+00 1199.0
10 TraesCS1A01G100500 chr7A 93.726 797 41 4 1 791 642252445 642251652 0.000000e+00 1186.0
11 TraesCS1A01G100500 chr7A 93.703 794 42 4 1 790 232344557 232343768 0.000000e+00 1182.0
12 TraesCS1A01G100500 chr4A 93.985 798 39 6 1 791 44442248 44441453 0.000000e+00 1199.0
13 TraesCS1A01G100500 chr6A 93.962 795 40 5 1 790 563480153 563480944 0.000000e+00 1195.0
14 TraesCS1A01G100500 chr6A 93.836 795 41 6 1 791 303629954 303630744 0.000000e+00 1190.0
15 TraesCS1A01G100500 chr2A 93.805 791 44 4 1 790 591576447 591575661 0.000000e+00 1184.0
16 TraesCS1A01G100500 chr2A 89.630 270 27 1 3588 3857 14238642 14238374 3.690000e-90 342.0
17 TraesCS1A01G100500 chr3D 90.441 272 25 1 3584 3855 506060403 506060133 1.320000e-94 357.0
18 TraesCS1A01G100500 chr3D 89.630 270 27 1 3588 3857 76940832 76941100 3.690000e-90 342.0
19 TraesCS1A01G100500 chr3D 88.889 270 30 0 3588 3857 549246574 549246843 2.220000e-87 333.0
20 TraesCS1A01G100500 chr7D 89.925 268 27 0 3590 3857 575166872 575166605 2.850000e-91 346.0
21 TraesCS1A01G100500 chr4B 89.179 268 29 0 3590 3857 43232280 43232013 6.170000e-88 335.0
22 TraesCS1A01G100500 chr4D 89.179 268 28 1 3590 3857 3792714 3792980 2.220000e-87 333.0
23 TraesCS1A01G100500 chr5D 100.000 28 0 0 1297 1324 192953975 192953948 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G100500 chr1A 96474882 96478738 3856 True 7123.000000 7123 100.000000 1 3857 1 chr1A.!!$R1 3856
1 TraesCS1A01G100500 chr1B 123961826 123964540 2714 False 4039.000000 4039 93.750000 912 3591 1 chr1B.!!$F1 2679
2 TraesCS1A01G100500 chr1D 78975253 78979107 3854 False 1366.666667 3437 90.072333 912 3591 3 chr1D.!!$F1 2679
3 TraesCS1A01G100500 chr7A 552451787 552452579 792 True 1208.000000 1208 94.221000 1 792 1 chr7A.!!$R3 791
4 TraesCS1A01G100500 chr7A 690374936 690375729 793 True 1203.000000 1203 94.103000 1 790 1 chr7A.!!$R5 789
5 TraesCS1A01G100500 chr7A 103106540 103107334 794 True 1199.000000 1199 93.977000 1 792 1 chr7A.!!$R1 791
6 TraesCS1A01G100500 chr7A 642251652 642252445 793 True 1186.000000 1186 93.726000 1 791 1 chr7A.!!$R4 790
7 TraesCS1A01G100500 chr7A 232343768 232344557 789 True 1182.000000 1182 93.703000 1 790 1 chr7A.!!$R2 789
8 TraesCS1A01G100500 chr4A 44441453 44442248 795 True 1199.000000 1199 93.985000 1 791 1 chr4A.!!$R1 790
9 TraesCS1A01G100500 chr6A 563480153 563480944 791 False 1195.000000 1195 93.962000 1 790 1 chr6A.!!$F2 789
10 TraesCS1A01G100500 chr6A 303629954 303630744 790 False 1190.000000 1190 93.836000 1 791 1 chr6A.!!$F1 790
11 TraesCS1A01G100500 chr2A 591575661 591576447 786 True 1184.000000 1184 93.805000 1 790 1 chr2A.!!$R2 789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 666 0.937304 TTTTGAGCGAGTGTGTGAGC 59.063 50.0 0.0 0.0 0.00 4.26 F
1294 1306 0.248825 CTCCTGGAACTCGCTCATCG 60.249 60.0 0.0 0.0 40.15 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 2163 0.036388 TGGGCGTCTCATCAAAGACC 60.036 55.0 0.00 0.00 42.23 3.85 R
2869 2881 0.169451 CAGAATCAAGCATGCACGCA 59.831 50.0 21.98 0.23 0.00 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 93 6.633500 ACAGAAAATCCTTTGACATTTCGA 57.367 33.333 0.00 0.00 35.96 3.71
317 322 7.358765 CGTTGGTGATTCGAATTGCAAATAAAA 60.359 33.333 12.81 0.00 0.00 1.52
385 391 7.145323 GCATACACAACTATGAAAAACCTTGT 58.855 34.615 0.00 0.00 0.00 3.16
393 403 7.189079 ACTATGAAAAACCTTGTGGGAAAAA 57.811 32.000 0.00 0.00 38.76 1.94
550 560 7.660112 TGTGATGCAATGTGAAACTAAAAGAT 58.340 30.769 0.00 0.00 38.04 2.40
575 585 4.058817 GGGCCTATTAATGTCTTGAGTCG 58.941 47.826 0.84 0.00 0.00 4.18
578 588 5.348986 GCCTATTAATGTCTTGAGTCGTGA 58.651 41.667 0.00 0.00 0.00 4.35
630 640 4.041917 CGTTGCAATGCACGGGCT 62.042 61.111 12.74 0.00 38.71 5.19
631 641 2.339712 GTTGCAATGCACGGGCTT 59.660 55.556 12.74 0.00 38.71 4.35
656 666 0.937304 TTTTGAGCGAGTGTGTGAGC 59.063 50.000 0.00 0.00 0.00 4.26
815 825 8.970859 ATCAGTGAAAAATAATACTCCCTCTG 57.029 34.615 0.00 0.00 0.00 3.35
816 826 7.918076 TCAGTGAAAAATAATACTCCCTCTGT 58.082 34.615 0.00 0.00 0.00 3.41
817 827 8.041323 TCAGTGAAAAATAATACTCCCTCTGTC 58.959 37.037 0.00 0.00 0.00 3.51
818 828 7.281100 CAGTGAAAAATAATACTCCCTCTGTCC 59.719 40.741 0.00 0.00 0.00 4.02
819 829 6.542735 GTGAAAAATAATACTCCCTCTGTCCC 59.457 42.308 0.00 0.00 0.00 4.46
820 830 6.216662 TGAAAAATAATACTCCCTCTGTCCCA 59.783 38.462 0.00 0.00 0.00 4.37
821 831 5.632034 AAATAATACTCCCTCTGTCCCAC 57.368 43.478 0.00 0.00 0.00 4.61
822 832 2.642171 AATACTCCCTCTGTCCCACA 57.358 50.000 0.00 0.00 0.00 4.17
823 833 2.642171 ATACTCCCTCTGTCCCACAA 57.358 50.000 0.00 0.00 0.00 3.33
824 834 2.642171 TACTCCCTCTGTCCCACAAT 57.358 50.000 0.00 0.00 0.00 2.71
825 835 2.642171 ACTCCCTCTGTCCCACAATA 57.358 50.000 0.00 0.00 0.00 1.90
826 836 3.136641 ACTCCCTCTGTCCCACAATAT 57.863 47.619 0.00 0.00 0.00 1.28
827 837 4.280789 ACTCCCTCTGTCCCACAATATA 57.719 45.455 0.00 0.00 0.00 0.86
828 838 4.227197 ACTCCCTCTGTCCCACAATATAG 58.773 47.826 0.00 0.00 0.00 1.31
829 839 4.078571 ACTCCCTCTGTCCCACAATATAGA 60.079 45.833 0.00 0.00 0.00 1.98
830 840 5.090139 CTCCCTCTGTCCCACAATATAGAT 58.910 45.833 0.00 0.00 0.00 1.98
831 841 5.476983 TCCCTCTGTCCCACAATATAGATT 58.523 41.667 0.00 0.00 0.00 2.40
832 842 5.307976 TCCCTCTGTCCCACAATATAGATTG 59.692 44.000 8.52 8.52 46.77 2.67
852 862 7.435068 GATTGTTTTTCAAGCTAGTACCTGA 57.565 36.000 0.00 0.00 39.10 3.86
853 863 6.613755 TTGTTTTTCAAGCTAGTACCTGAC 57.386 37.500 0.00 0.00 0.00 3.51
854 864 5.061179 TGTTTTTCAAGCTAGTACCTGACC 58.939 41.667 0.00 0.00 0.00 4.02
855 865 5.163237 TGTTTTTCAAGCTAGTACCTGACCT 60.163 40.000 0.00 0.00 0.00 3.85
856 866 6.042322 TGTTTTTCAAGCTAGTACCTGACCTA 59.958 38.462 0.00 0.00 0.00 3.08
857 867 6.675413 TTTTCAAGCTAGTACCTGACCTAA 57.325 37.500 0.00 0.00 0.00 2.69
858 868 6.869206 TTTCAAGCTAGTACCTGACCTAAT 57.131 37.500 0.00 0.00 0.00 1.73
859 869 6.869206 TTCAAGCTAGTACCTGACCTAATT 57.131 37.500 0.00 0.00 0.00 1.40
860 870 7.966339 TTCAAGCTAGTACCTGACCTAATTA 57.034 36.000 0.00 0.00 0.00 1.40
861 871 8.548880 TTCAAGCTAGTACCTGACCTAATTAT 57.451 34.615 0.00 0.00 0.00 1.28
862 872 7.952671 TCAAGCTAGTACCTGACCTAATTATG 58.047 38.462 0.00 0.00 0.00 1.90
863 873 7.563924 TCAAGCTAGTACCTGACCTAATTATGT 59.436 37.037 0.00 0.00 0.00 2.29
864 874 7.916077 AGCTAGTACCTGACCTAATTATGTT 57.084 36.000 0.00 0.00 0.00 2.71
865 875 8.320338 AGCTAGTACCTGACCTAATTATGTTT 57.680 34.615 0.00 0.00 0.00 2.83
866 876 8.769359 AGCTAGTACCTGACCTAATTATGTTTT 58.231 33.333 0.00 0.00 0.00 2.43
870 880 9.886132 AGTACCTGACCTAATTATGTTTTACAG 57.114 33.333 0.00 0.00 0.00 2.74
871 881 7.625828 ACCTGACCTAATTATGTTTTACAGC 57.374 36.000 0.00 0.00 0.00 4.40
872 882 7.172342 ACCTGACCTAATTATGTTTTACAGCA 58.828 34.615 0.00 0.00 0.00 4.41
873 883 7.834181 ACCTGACCTAATTATGTTTTACAGCAT 59.166 33.333 0.00 0.00 0.00 3.79
874 884 8.345565 CCTGACCTAATTATGTTTTACAGCATC 58.654 37.037 0.00 0.00 0.00 3.91
875 885 7.915508 TGACCTAATTATGTTTTACAGCATCG 58.084 34.615 0.00 0.00 0.00 3.84
876 886 7.551262 TGACCTAATTATGTTTTACAGCATCGT 59.449 33.333 0.00 0.00 0.00 3.73
877 887 8.951787 ACCTAATTATGTTTTACAGCATCGTA 57.048 30.769 0.00 0.00 0.00 3.43
878 888 9.555727 ACCTAATTATGTTTTACAGCATCGTAT 57.444 29.630 0.00 0.00 0.00 3.06
879 889 9.811655 CCTAATTATGTTTTACAGCATCGTATG 57.188 33.333 0.00 0.00 0.00 2.39
882 892 4.937696 TGTTTTACAGCATCGTATGTGG 57.062 40.909 0.00 0.00 0.00 4.17
883 893 4.320023 TGTTTTACAGCATCGTATGTGGT 58.680 39.130 0.00 0.00 0.00 4.16
884 894 5.480205 TGTTTTACAGCATCGTATGTGGTA 58.520 37.500 0.00 0.00 0.00 3.25
885 895 5.349270 TGTTTTACAGCATCGTATGTGGTAC 59.651 40.000 0.00 0.00 0.00 3.34
886 896 4.722361 TTACAGCATCGTATGTGGTACA 57.278 40.909 0.00 0.00 32.61 2.90
887 897 3.165058 ACAGCATCGTATGTGGTACAG 57.835 47.619 0.00 0.00 41.80 2.74
888 898 2.496070 ACAGCATCGTATGTGGTACAGT 59.504 45.455 0.00 0.00 41.80 3.55
889 899 3.697542 ACAGCATCGTATGTGGTACAGTA 59.302 43.478 0.00 0.00 41.80 2.74
890 900 4.202020 ACAGCATCGTATGTGGTACAGTAG 60.202 45.833 0.00 0.00 41.80 2.57
891 901 3.952323 AGCATCGTATGTGGTACAGTAGT 59.048 43.478 0.00 0.00 41.80 2.73
892 902 5.008316 CAGCATCGTATGTGGTACAGTAGTA 59.992 44.000 0.00 0.00 41.80 1.82
893 903 5.591472 AGCATCGTATGTGGTACAGTAGTAA 59.409 40.000 0.00 0.00 41.80 2.24
894 904 6.264744 AGCATCGTATGTGGTACAGTAGTAAT 59.735 38.462 0.00 0.00 41.80 1.89
895 905 6.921857 GCATCGTATGTGGTACAGTAGTAATT 59.078 38.462 0.00 0.00 41.80 1.40
896 906 7.437267 GCATCGTATGTGGTACAGTAGTAATTT 59.563 37.037 0.00 0.00 41.80 1.82
897 907 8.965172 CATCGTATGTGGTACAGTAGTAATTTC 58.035 37.037 0.00 0.00 41.80 2.17
898 908 8.284945 TCGTATGTGGTACAGTAGTAATTTCT 57.715 34.615 0.00 0.00 41.80 2.52
899 909 8.400947 TCGTATGTGGTACAGTAGTAATTTCTC 58.599 37.037 0.00 0.00 41.80 2.87
900 910 8.186163 CGTATGTGGTACAGTAGTAATTTCTCA 58.814 37.037 0.00 0.00 41.80 3.27
901 911 9.865321 GTATGTGGTACAGTAGTAATTTCTCAA 57.135 33.333 0.00 0.00 41.80 3.02
903 913 9.787435 ATGTGGTACAGTAGTAATTTCTCAAAA 57.213 29.630 0.00 0.00 41.80 2.44
904 914 9.616156 TGTGGTACAGTAGTAATTTCTCAAAAA 57.384 29.630 0.00 0.00 41.80 1.94
1004 1016 4.959596 AAAAGCTGAGCATGTACATGAG 57.040 40.909 34.65 24.33 41.20 2.90
1008 1020 2.915349 CTGAGCATGTACATGAGCCTT 58.085 47.619 34.65 16.06 41.20 4.35
1152 1164 0.988145 CCCACTTCCTCCTATGCCCA 60.988 60.000 0.00 0.00 0.00 5.36
1155 1167 1.134280 CACTTCCTCCTATGCCCACTG 60.134 57.143 0.00 0.00 0.00 3.66
1241 1253 4.953868 CCACGACGACGCCACCAA 62.954 66.667 7.30 0.00 43.96 3.67
1294 1306 0.248825 CTCCTGGAACTCGCTCATCG 60.249 60.000 0.00 0.00 40.15 3.84
1488 1500 1.371558 GTTTGAGGGCGAGGTGTCT 59.628 57.895 0.00 0.00 0.00 3.41
1489 1501 0.951040 GTTTGAGGGCGAGGTGTCTG 60.951 60.000 0.00 0.00 0.00 3.51
1524 1536 1.516603 GACCGCCTACTTCGAGTGC 60.517 63.158 0.00 0.00 0.00 4.40
1527 1539 2.202756 GCCTACTTCGAGTGCGGG 60.203 66.667 0.00 0.00 38.28 6.13
1581 1593 0.976641 TGGCAGAGAGGAACGTCATT 59.023 50.000 0.00 0.00 0.00 2.57
1602 1614 0.668706 CATGGACGGCGATGATCTCC 60.669 60.000 16.62 9.77 32.59 3.71
1665 1677 3.250323 CGACAGATGAGGCGCACG 61.250 66.667 10.83 0.00 0.00 5.34
1751 1763 1.407979 GGAAGGCAAGCAGATTCATGG 59.592 52.381 0.00 0.00 0.00 3.66
1827 1839 5.092554 TGGATGTTTACTCTAAATGCGGA 57.907 39.130 0.00 0.00 0.00 5.54
1920 1932 2.417243 GGTCGGATTTGCTCAAAATGGG 60.417 50.000 0.00 0.00 38.64 4.00
1948 1960 2.478894 GAGAAGGCGTTCGAATTGTTCA 59.521 45.455 13.11 0.00 37.79 3.18
2013 2025 0.901580 CTGCAGTTCTGGGGGCATTT 60.902 55.000 5.25 0.00 35.45 2.32
2076 2088 3.188048 CACTGGTCATCAAGAAGTGCTTC 59.812 47.826 3.89 3.89 39.78 3.86
2151 2163 0.321021 AGCTGCAAGAGTCTGTCCAG 59.679 55.000 1.02 2.07 34.07 3.86
2154 2166 0.681733 TGCAAGAGTCTGTCCAGGTC 59.318 55.000 0.00 0.00 0.00 3.85
2157 2169 2.224402 GCAAGAGTCTGTCCAGGTCTTT 60.224 50.000 0.00 0.00 33.05 2.52
2172 2184 0.976641 TCTTTGATGAGACGCCCAGT 59.023 50.000 0.00 0.00 0.00 4.00
2175 2187 3.007506 TCTTTGATGAGACGCCCAGTAAA 59.992 43.478 0.00 0.00 0.00 2.01
2181 2193 1.725164 GAGACGCCCAGTAAAAACTCG 59.275 52.381 0.00 0.00 0.00 4.18
2196 2208 3.810310 AACTCGATCTCATGGAACTCC 57.190 47.619 0.00 0.00 0.00 3.85
2211 2223 0.179062 ACTCCATCATCGCAGCCTTC 60.179 55.000 0.00 0.00 0.00 3.46
2770 2782 1.235948 ACTCACGTCTCGTCCTGACC 61.236 60.000 0.00 0.00 38.32 4.02
2791 2803 2.014857 CTGCTCCTGTTGATGATGTGG 58.985 52.381 0.00 0.00 0.00 4.17
2814 2826 4.060372 CAGCTGTCTGCAGTTGCT 57.940 55.556 14.67 17.59 44.61 3.91
2867 2879 1.078759 GCTCTGTGAATGGGACGTCG 61.079 60.000 9.92 0.00 0.00 5.12
2869 2881 1.183030 TCTGTGAATGGGACGTCGGT 61.183 55.000 9.92 0.00 0.00 4.69
2870 2882 1.005512 TGTGAATGGGACGTCGGTG 60.006 57.895 9.92 0.00 0.00 4.94
2871 2883 2.047655 TGAATGGGACGTCGGTGC 60.048 61.111 9.92 0.00 0.00 5.01
2878 2891 4.134187 GACGTCGGTGCGTGCATG 62.134 66.667 0.00 0.09 45.79 4.06
2915 2932 9.745018 ATGCACATAATATAGTGAAGGCTATTT 57.255 29.630 0.00 0.00 37.97 1.40
3003 3092 0.106569 TGATGACATGGGCATGGACC 60.107 55.000 7.90 0.00 42.91 4.46
3092 3191 1.000359 TGGCTCCTGGAGATCACGA 60.000 57.895 27.53 3.81 0.00 4.35
3166 3268 2.671177 CGGCACTCGGCTTTGACAG 61.671 63.158 0.00 0.00 44.01 3.51
3269 3391 8.706492 TGACTCTAAAAACGTCTTGTAAAAGA 57.294 30.769 0.00 0.00 0.00 2.52
3286 3408 7.728148 TGTAAAAGATTACAGAGGTGTACACA 58.272 34.615 26.51 5.37 44.90 3.72
3288 3410 7.730364 AAAAGATTACAGAGGTGTACACAAG 57.270 36.000 26.51 14.82 38.95 3.16
3372 3494 5.627499 TTTGAAGATGGAAGACAAATCGG 57.373 39.130 0.00 0.00 0.00 4.18
3456 4657 4.923281 CGTTGGTGAAAGGAAAATTGATCC 59.077 41.667 2.91 2.91 37.22 3.36
3473 4674 1.040339 TCCGCCTTGCAGTTTTTGGT 61.040 50.000 0.00 0.00 0.00 3.67
3532 4733 3.508845 ATGTACACCCAGCTTGAGTTT 57.491 42.857 0.00 0.00 0.00 2.66
3538 4739 3.119137 ACACCCAGCTTGAGTTTGAAAAC 60.119 43.478 0.00 0.00 39.17 2.43
3565 4766 4.866921 TGATCATCATGCTAGCAATTTGC 58.133 39.130 23.54 13.55 45.46 3.68
3591 4792 3.932822 TGTTAAAGACGCCATGCTTAGA 58.067 40.909 0.00 0.00 0.00 2.10
3592 4793 3.932710 TGTTAAAGACGCCATGCTTAGAG 59.067 43.478 0.00 0.00 0.00 2.43
3593 4794 1.373570 AAAGACGCCATGCTTAGAGC 58.626 50.000 0.00 0.00 42.82 4.09
3605 4806 3.099267 GCTTAGAGCAATTCTAGCGGA 57.901 47.619 0.00 0.00 41.89 5.54
3606 4807 2.797719 GCTTAGAGCAATTCTAGCGGAC 59.202 50.000 0.00 0.00 41.89 4.79
3607 4808 3.385577 CTTAGAGCAATTCTAGCGGACC 58.614 50.000 0.00 0.00 39.50 4.46
3608 4809 0.466124 AGAGCAATTCTAGCGGACCC 59.534 55.000 0.00 0.00 33.23 4.46
3609 4810 0.533085 GAGCAATTCTAGCGGACCCC 60.533 60.000 0.00 0.00 37.01 4.95
3619 4820 4.020378 CGGACCCCGCAAAACACG 62.020 66.667 0.00 0.00 41.17 4.49
3620 4821 4.337060 GGACCCCGCAAAACACGC 62.337 66.667 0.00 0.00 0.00 5.34
3621 4822 3.587933 GACCCCGCAAAACACGCA 61.588 61.111 0.00 0.00 0.00 5.24
3622 4823 3.536498 GACCCCGCAAAACACGCAG 62.536 63.158 0.00 0.00 0.00 5.18
3623 4824 3.283684 CCCCGCAAAACACGCAGA 61.284 61.111 0.00 0.00 0.00 4.26
3624 4825 2.051345 CCCGCAAAACACGCAGAC 60.051 61.111 0.00 0.00 0.00 3.51
3625 4826 2.051345 CCGCAAAACACGCAGACC 60.051 61.111 0.00 0.00 0.00 3.85
3626 4827 2.051345 CGCAAAACACGCAGACCC 60.051 61.111 0.00 0.00 0.00 4.46
3627 4828 2.051345 GCAAAACACGCAGACCCG 60.051 61.111 0.00 0.00 0.00 5.28
3628 4829 2.051345 CAAAACACGCAGACCCGC 60.051 61.111 0.00 0.00 0.00 6.13
3629 4830 2.515057 AAAACACGCAGACCCGCA 60.515 55.556 0.00 0.00 0.00 5.69
3630 4831 2.115911 AAAACACGCAGACCCGCAA 61.116 52.632 0.00 0.00 0.00 4.85
3631 4832 1.658686 AAAACACGCAGACCCGCAAA 61.659 50.000 0.00 0.00 0.00 3.68
3632 4833 1.658686 AAACACGCAGACCCGCAAAA 61.659 50.000 0.00 0.00 0.00 2.44
3633 4834 1.452145 AACACGCAGACCCGCAAAAT 61.452 50.000 0.00 0.00 0.00 1.82
3634 4835 1.285641 CACGCAGACCCGCAAAATT 59.714 52.632 0.00 0.00 0.00 1.82
3635 4836 0.729140 CACGCAGACCCGCAAAATTC 60.729 55.000 0.00 0.00 0.00 2.17
3636 4837 1.154035 CGCAGACCCGCAAAATTCC 60.154 57.895 0.00 0.00 0.00 3.01
3637 4838 1.154035 GCAGACCCGCAAAATTCCG 60.154 57.895 0.00 0.00 0.00 4.30
3638 4839 1.506262 CAGACCCGCAAAATTCCGG 59.494 57.895 0.00 0.00 43.97 5.14
3639 4840 1.074248 AGACCCGCAAAATTCCGGT 59.926 52.632 0.00 0.00 42.87 5.28
3640 4841 1.211709 GACCCGCAAAATTCCGGTG 59.788 57.895 0.00 0.00 42.87 4.94
3641 4842 1.228306 ACCCGCAAAATTCCGGTGA 60.228 52.632 0.00 0.00 42.87 4.02
3642 4843 1.241315 ACCCGCAAAATTCCGGTGAG 61.241 55.000 0.00 0.00 42.87 3.51
3643 4844 1.241315 CCCGCAAAATTCCGGTGAGT 61.241 55.000 0.00 0.00 42.87 3.41
3644 4845 1.444836 CCGCAAAATTCCGGTGAGTA 58.555 50.000 0.00 0.00 39.67 2.59
3645 4846 2.014128 CCGCAAAATTCCGGTGAGTAT 58.986 47.619 0.00 0.00 39.67 2.12
3646 4847 2.223249 CCGCAAAATTCCGGTGAGTATG 60.223 50.000 0.00 0.00 39.67 2.39
3647 4848 2.418628 CGCAAAATTCCGGTGAGTATGT 59.581 45.455 0.00 0.00 0.00 2.29
3648 4849 3.727673 CGCAAAATTCCGGTGAGTATGTG 60.728 47.826 0.00 0.00 0.00 3.21
3649 4850 3.427503 GCAAAATTCCGGTGAGTATGTGG 60.428 47.826 0.00 0.00 0.00 4.17
3650 4851 2.710096 AATTCCGGTGAGTATGTGGG 57.290 50.000 0.00 0.00 0.00 4.61
3651 4852 0.180406 ATTCCGGTGAGTATGTGGGC 59.820 55.000 0.00 0.00 0.00 5.36
3652 4853 0.907704 TTCCGGTGAGTATGTGGGCT 60.908 55.000 0.00 0.00 0.00 5.19
3653 4854 1.144057 CCGGTGAGTATGTGGGCTC 59.856 63.158 0.00 0.00 0.00 4.70
3654 4855 1.226974 CGGTGAGTATGTGGGCTCG 60.227 63.158 0.00 0.00 34.67 5.03
3655 4856 1.144057 GGTGAGTATGTGGGCTCGG 59.856 63.158 0.00 0.00 34.67 4.63
3656 4857 1.521681 GTGAGTATGTGGGCTCGGC 60.522 63.158 0.00 0.00 34.67 5.54
3666 4867 2.892640 GGCTCGGCCCAATTTTCC 59.107 61.111 0.00 0.00 44.06 3.13
3667 4868 2.489751 GCTCGGCCCAATTTTCCG 59.510 61.111 0.00 4.00 44.16 4.30
3668 4869 3.063743 GCTCGGCCCAATTTTCCGG 62.064 63.158 0.00 0.00 43.10 5.14
3669 4870 1.677633 CTCGGCCCAATTTTCCGGT 60.678 57.895 0.00 0.00 43.10 5.28
3670 4871 1.654023 CTCGGCCCAATTTTCCGGTC 61.654 60.000 0.00 0.00 43.10 4.79
3671 4872 1.974343 CGGCCCAATTTTCCGGTCA 60.974 57.895 0.00 0.00 39.52 4.02
3672 4873 1.890174 GGCCCAATTTTCCGGTCAG 59.110 57.895 0.00 0.00 0.00 3.51
3673 4874 0.610785 GGCCCAATTTTCCGGTCAGA 60.611 55.000 0.00 0.00 0.00 3.27
3674 4875 1.253100 GCCCAATTTTCCGGTCAGAA 58.747 50.000 0.00 0.00 0.00 3.02
3675 4876 1.067846 GCCCAATTTTCCGGTCAGAAC 60.068 52.381 0.00 0.00 0.00 3.01
3676 4877 2.235016 CCCAATTTTCCGGTCAGAACA 58.765 47.619 0.00 0.00 0.00 3.18
3677 4878 2.228822 CCCAATTTTCCGGTCAGAACAG 59.771 50.000 0.00 0.00 0.00 3.16
3678 4879 3.146066 CCAATTTTCCGGTCAGAACAGA 58.854 45.455 0.00 0.00 0.00 3.41
3679 4880 3.189287 CCAATTTTCCGGTCAGAACAGAG 59.811 47.826 0.00 0.00 0.00 3.35
3680 4881 1.878953 TTTTCCGGTCAGAACAGAGC 58.121 50.000 0.00 0.00 0.00 4.09
3681 4882 0.034896 TTTCCGGTCAGAACAGAGCC 59.965 55.000 0.00 0.00 32.57 4.70
3682 4883 1.827399 TTCCGGTCAGAACAGAGCCC 61.827 60.000 0.00 0.00 32.57 5.19
3683 4884 2.583441 CCGGTCAGAACAGAGCCCA 61.583 63.158 0.00 0.00 32.57 5.36
3684 4885 1.374758 CGGTCAGAACAGAGCCCAC 60.375 63.158 0.00 0.00 32.57 4.61
3685 4886 1.754745 GGTCAGAACAGAGCCCACA 59.245 57.895 0.00 0.00 0.00 4.17
3686 4887 0.326264 GGTCAGAACAGAGCCCACAT 59.674 55.000 0.00 0.00 0.00 3.21
3687 4888 1.555075 GGTCAGAACAGAGCCCACATA 59.445 52.381 0.00 0.00 0.00 2.29
3688 4889 2.622436 GTCAGAACAGAGCCCACATAC 58.378 52.381 0.00 0.00 0.00 2.39
3689 4890 2.234908 GTCAGAACAGAGCCCACATACT 59.765 50.000 0.00 0.00 0.00 2.12
3690 4891 2.497675 TCAGAACAGAGCCCACATACTC 59.502 50.000 0.00 0.00 0.00 2.59
3691 4892 1.478510 AGAACAGAGCCCACATACTCG 59.521 52.381 0.00 0.00 37.99 4.18
3692 4893 0.108138 AACAGAGCCCACATACTCGC 60.108 55.000 0.00 0.00 37.99 5.03
3693 4894 1.227380 CAGAGCCCACATACTCGCC 60.227 63.158 0.00 0.00 37.99 5.54
3694 4895 1.381872 AGAGCCCACATACTCGCCT 60.382 57.895 0.00 0.00 37.99 5.52
3695 4896 1.227380 GAGCCCACATACTCGCCTG 60.227 63.158 0.00 0.00 0.00 4.85
3696 4897 2.203070 GCCCACATACTCGCCTGG 60.203 66.667 0.00 0.00 0.00 4.45
3697 4898 2.203070 CCCACATACTCGCCTGGC 60.203 66.667 9.11 9.11 0.00 4.85
3698 4899 2.203070 CCACATACTCGCCTGGCC 60.203 66.667 14.12 0.00 0.00 5.36
3699 4900 2.203070 CACATACTCGCCTGGCCC 60.203 66.667 14.12 0.00 0.00 5.80
3700 4901 3.849951 ACATACTCGCCTGGCCCG 61.850 66.667 14.12 6.71 0.00 6.13
3707 4908 4.067913 CGCCTGGCCCGCAAATTT 62.068 61.111 14.12 0.00 0.00 1.82
3708 4909 2.347114 GCCTGGCCCGCAAATTTT 59.653 55.556 7.66 0.00 0.00 1.82
3709 4910 1.302431 GCCTGGCCCGCAAATTTTT 60.302 52.632 7.66 0.00 0.00 1.94
3747 4948 3.598715 CACGCCCCGACCGCTATA 61.599 66.667 0.00 0.00 0.00 1.31
3748 4949 2.599578 ACGCCCCGACCGCTATAT 60.600 61.111 0.00 0.00 0.00 0.86
3749 4950 2.181021 CGCCCCGACCGCTATATC 59.819 66.667 0.00 0.00 0.00 1.63
3750 4951 2.341101 CGCCCCGACCGCTATATCT 61.341 63.158 0.00 0.00 0.00 1.98
3751 4952 1.215647 GCCCCGACCGCTATATCTG 59.784 63.158 0.00 0.00 0.00 2.90
3752 4953 1.215647 CCCCGACCGCTATATCTGC 59.784 63.158 0.00 0.00 0.00 4.26
3761 4962 1.063806 GCTATATCTGCGGTTCTGCG 58.936 55.000 0.00 0.00 37.81 5.18
3762 4963 1.335964 GCTATATCTGCGGTTCTGCGA 60.336 52.381 0.00 0.85 37.81 5.10
3763 4964 2.320367 CTATATCTGCGGTTCTGCGAC 58.680 52.381 0.00 0.00 37.81 5.19
3764 4965 0.747255 ATATCTGCGGTTCTGCGACT 59.253 50.000 0.00 0.00 37.81 4.18
3765 4966 0.100682 TATCTGCGGTTCTGCGACTC 59.899 55.000 0.00 0.00 37.81 3.36
3766 4967 2.874010 ATCTGCGGTTCTGCGACTCG 62.874 60.000 0.00 0.00 37.81 4.18
3767 4968 3.898627 CTGCGGTTCTGCGACTCGT 62.899 63.158 0.00 0.00 37.81 4.18
3768 4969 2.733593 GCGGTTCTGCGACTCGTT 60.734 61.111 0.00 0.00 0.00 3.85
3769 4970 2.308039 GCGGTTCTGCGACTCGTTT 61.308 57.895 0.00 0.00 0.00 3.60
3770 4971 1.487231 CGGTTCTGCGACTCGTTTG 59.513 57.895 0.00 0.00 0.00 2.93
3771 4972 1.204312 GGTTCTGCGACTCGTTTGC 59.796 57.895 0.00 0.00 0.00 3.68
3772 4973 1.495584 GGTTCTGCGACTCGTTTGCA 61.496 55.000 0.00 2.39 37.07 4.08
3775 4976 2.108157 TGCGACTCGTTTGCAGGT 59.892 55.556 0.00 0.00 34.03 4.00
3776 4977 1.954146 TGCGACTCGTTTGCAGGTC 60.954 57.895 0.00 0.00 34.03 3.85
3777 4978 2.668280 GCGACTCGTTTGCAGGTCC 61.668 63.158 0.00 0.00 0.00 4.46
3778 4979 1.300620 CGACTCGTTTGCAGGTCCA 60.301 57.895 0.00 0.00 0.00 4.02
3779 4980 0.878523 CGACTCGTTTGCAGGTCCAA 60.879 55.000 0.00 0.00 0.00 3.53
3780 4981 1.305201 GACTCGTTTGCAGGTCCAAA 58.695 50.000 0.00 0.00 32.66 3.28
3781 4982 1.002792 GACTCGTTTGCAGGTCCAAAC 60.003 52.381 7.50 7.50 46.82 2.93
3791 4992 1.928199 GGTCCAAACCCTATCCCCC 59.072 63.158 0.00 0.00 39.93 5.40
3792 4993 1.530283 GTCCAAACCCTATCCCCCG 59.470 63.158 0.00 0.00 0.00 5.73
3793 4994 2.194868 CCAAACCCTATCCCCCGC 59.805 66.667 0.00 0.00 0.00 6.13
3794 4995 2.194868 CAAACCCTATCCCCCGCC 59.805 66.667 0.00 0.00 0.00 6.13
3795 4996 3.485745 AAACCCTATCCCCCGCCG 61.486 66.667 0.00 0.00 0.00 6.46
3818 5019 4.162690 GAGCCACGCGATTCCCCT 62.163 66.667 15.93 0.00 0.00 4.79
3819 5020 3.682292 GAGCCACGCGATTCCCCTT 62.682 63.158 15.93 0.00 0.00 3.95
3820 5021 2.750237 GCCACGCGATTCCCCTTT 60.750 61.111 15.93 0.00 0.00 3.11
3821 5022 2.761195 GCCACGCGATTCCCCTTTC 61.761 63.158 15.93 0.00 0.00 2.62
3822 5023 2.112815 CCACGCGATTCCCCTTTCC 61.113 63.158 15.93 0.00 0.00 3.13
3823 5024 2.112815 CACGCGATTCCCCTTTCCC 61.113 63.158 15.93 0.00 0.00 3.97
3824 5025 2.270850 CGCGATTCCCCTTTCCCA 59.729 61.111 0.00 0.00 0.00 4.37
3825 5026 1.152963 CGCGATTCCCCTTTCCCAT 60.153 57.895 0.00 0.00 0.00 4.00
3826 5027 1.166531 CGCGATTCCCCTTTCCCATC 61.167 60.000 0.00 0.00 0.00 3.51
3827 5028 0.183731 GCGATTCCCCTTTCCCATCT 59.816 55.000 0.00 0.00 0.00 2.90
3828 5029 1.410224 GCGATTCCCCTTTCCCATCTT 60.410 52.381 0.00 0.00 0.00 2.40
3829 5030 2.576615 CGATTCCCCTTTCCCATCTTC 58.423 52.381 0.00 0.00 0.00 2.87
3830 5031 2.092429 CGATTCCCCTTTCCCATCTTCA 60.092 50.000 0.00 0.00 0.00 3.02
3831 5032 2.899303 TTCCCCTTTCCCATCTTCAC 57.101 50.000 0.00 0.00 0.00 3.18
3832 5033 1.753903 TCCCCTTTCCCATCTTCACA 58.246 50.000 0.00 0.00 0.00 3.58
3833 5034 2.287584 TCCCCTTTCCCATCTTCACAT 58.712 47.619 0.00 0.00 0.00 3.21
3834 5035 2.654385 TCCCCTTTCCCATCTTCACATT 59.346 45.455 0.00 0.00 0.00 2.71
3835 5036 3.077391 TCCCCTTTCCCATCTTCACATTT 59.923 43.478 0.00 0.00 0.00 2.32
3836 5037 3.840078 CCCCTTTCCCATCTTCACATTTT 59.160 43.478 0.00 0.00 0.00 1.82
3837 5038 4.286808 CCCCTTTCCCATCTTCACATTTTT 59.713 41.667 0.00 0.00 0.00 1.94
3838 5039 5.482006 CCCTTTCCCATCTTCACATTTTTC 58.518 41.667 0.00 0.00 0.00 2.29
3839 5040 5.163513 CCTTTCCCATCTTCACATTTTTCG 58.836 41.667 0.00 0.00 0.00 3.46
3840 5041 5.278957 CCTTTCCCATCTTCACATTTTTCGT 60.279 40.000 0.00 0.00 0.00 3.85
3841 5042 5.371115 TTCCCATCTTCACATTTTTCGTC 57.629 39.130 0.00 0.00 0.00 4.20
3842 5043 3.435327 TCCCATCTTCACATTTTTCGTCG 59.565 43.478 0.00 0.00 0.00 5.12
3843 5044 3.163594 CCATCTTCACATTTTTCGTCGC 58.836 45.455 0.00 0.00 0.00 5.19
3844 5045 2.961522 TCTTCACATTTTTCGTCGCC 57.038 45.000 0.00 0.00 0.00 5.54
3845 5046 1.193650 TCTTCACATTTTTCGTCGCCG 59.806 47.619 0.00 0.00 0.00 6.46
3846 5047 0.236187 TTCACATTTTTCGTCGCCGG 59.764 50.000 0.00 0.00 33.95 6.13
3847 5048 1.795962 CACATTTTTCGTCGCCGGC 60.796 57.895 19.07 19.07 33.95 6.13
3848 5049 2.573167 CATTTTTCGTCGCCGGCG 60.573 61.111 42.13 42.13 41.35 6.46
3849 5050 2.739287 ATTTTTCGTCGCCGGCGA 60.739 55.556 45.37 45.37 46.87 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 78 9.177608 AGATTGATTAATCGAAATGTCAAAGGA 57.822 29.630 9.48 0.00 45.84 3.36
287 292 3.064820 GCAATTCGAATCACCAACGGTAT 59.935 43.478 11.83 0.00 32.11 2.73
294 299 7.953158 TTTTTATTTGCAATTCGAATCACCA 57.047 28.000 11.83 6.20 31.39 4.17
533 543 5.279456 GGCCCACATCTTTTAGTTTCACATT 60.279 40.000 0.00 0.00 0.00 2.71
550 560 4.227300 ACTCAAGACATTAATAGGCCCACA 59.773 41.667 0.00 0.00 0.00 4.17
575 585 6.430000 ACACACACTCTTAACCCAATAATCAC 59.570 38.462 0.00 0.00 0.00 3.06
578 588 9.528489 AATAACACACACTCTTAACCCAATAAT 57.472 29.630 0.00 0.00 0.00 1.28
640 650 0.887933 TATGCTCACACACTCGCTCA 59.112 50.000 0.00 0.00 0.00 4.26
656 666 7.013559 TGGCATCACATTTGTATTTCCTCTATG 59.986 37.037 0.00 0.00 0.00 2.23
792 802 7.281100 GGACAGAGGGAGTATTATTTTTCACTG 59.719 40.741 0.00 0.00 0.00 3.66
793 803 7.339482 GGACAGAGGGAGTATTATTTTTCACT 58.661 38.462 0.00 0.00 0.00 3.41
794 804 6.542735 GGGACAGAGGGAGTATTATTTTTCAC 59.457 42.308 0.00 0.00 0.00 3.18
795 805 6.216662 TGGGACAGAGGGAGTATTATTTTTCA 59.783 38.462 0.00 0.00 0.00 2.69
796 806 6.542735 GTGGGACAGAGGGAGTATTATTTTTC 59.457 42.308 0.00 0.00 41.80 2.29
797 807 6.011981 TGTGGGACAGAGGGAGTATTATTTTT 60.012 38.462 0.00 0.00 41.80 1.94
798 808 5.491078 TGTGGGACAGAGGGAGTATTATTTT 59.509 40.000 0.00 0.00 41.80 1.82
799 809 5.036916 TGTGGGACAGAGGGAGTATTATTT 58.963 41.667 0.00 0.00 41.80 1.40
800 810 4.631234 TGTGGGACAGAGGGAGTATTATT 58.369 43.478 0.00 0.00 41.80 1.40
801 811 4.280789 TGTGGGACAGAGGGAGTATTAT 57.719 45.455 0.00 0.00 41.80 1.28
802 812 3.769189 TGTGGGACAGAGGGAGTATTA 57.231 47.619 0.00 0.00 41.80 0.98
803 813 2.642171 TGTGGGACAGAGGGAGTATT 57.358 50.000 0.00 0.00 41.80 1.89
804 814 2.642171 TTGTGGGACAGAGGGAGTAT 57.358 50.000 0.00 0.00 41.80 2.12
805 815 2.642171 ATTGTGGGACAGAGGGAGTA 57.358 50.000 0.00 0.00 41.80 2.59
806 816 2.642171 TATTGTGGGACAGAGGGAGT 57.358 50.000 0.00 0.00 41.80 3.85
807 817 4.483950 TCTATATTGTGGGACAGAGGGAG 58.516 47.826 0.00 0.00 41.80 4.30
808 818 4.552883 TCTATATTGTGGGACAGAGGGA 57.447 45.455 0.00 0.00 41.80 4.20
809 819 5.555017 CAATCTATATTGTGGGACAGAGGG 58.445 45.833 0.00 0.00 41.80 4.30
825 835 9.167311 CAGGTACTAGCTTGAAAAACAATCTAT 57.833 33.333 1.04 0.00 36.86 1.98
826 836 8.372459 TCAGGTACTAGCTTGAAAAACAATCTA 58.628 33.333 1.04 0.00 36.02 1.98
827 837 7.173390 GTCAGGTACTAGCTTGAAAAACAATCT 59.827 37.037 1.04 0.00 36.02 2.40
828 838 7.298854 GTCAGGTACTAGCTTGAAAAACAATC 58.701 38.462 1.04 0.00 36.02 2.67
829 839 6.206829 GGTCAGGTACTAGCTTGAAAAACAAT 59.793 38.462 1.04 0.00 36.02 2.71
830 840 5.529800 GGTCAGGTACTAGCTTGAAAAACAA 59.470 40.000 1.04 0.00 36.02 2.83
831 841 5.061179 GGTCAGGTACTAGCTTGAAAAACA 58.939 41.667 1.04 0.00 36.02 2.83
832 842 5.306394 AGGTCAGGTACTAGCTTGAAAAAC 58.694 41.667 1.04 0.00 36.02 2.43
833 843 5.562298 AGGTCAGGTACTAGCTTGAAAAA 57.438 39.130 1.04 0.00 36.02 1.94
834 844 6.675413 TTAGGTCAGGTACTAGCTTGAAAA 57.325 37.500 1.04 0.00 36.02 2.29
835 845 6.869206 ATTAGGTCAGGTACTAGCTTGAAA 57.131 37.500 1.04 0.00 36.02 2.69
836 846 6.869206 AATTAGGTCAGGTACTAGCTTGAA 57.131 37.500 1.04 0.00 36.02 2.69
837 847 7.563924 ACATAATTAGGTCAGGTACTAGCTTGA 59.436 37.037 1.04 0.00 36.02 3.02
838 848 7.727181 ACATAATTAGGTCAGGTACTAGCTTG 58.273 38.462 0.00 0.00 36.02 4.01
839 849 7.916077 ACATAATTAGGTCAGGTACTAGCTT 57.084 36.000 0.00 0.00 36.02 3.74
840 850 7.916077 AACATAATTAGGTCAGGTACTAGCT 57.084 36.000 2.81 0.00 36.02 3.32
841 851 8.959705 AAAACATAATTAGGTCAGGTACTAGC 57.040 34.615 2.81 0.00 36.02 3.42
844 854 9.886132 CTGTAAAACATAATTAGGTCAGGTACT 57.114 33.333 2.81 0.00 43.88 2.73
845 855 8.610035 GCTGTAAAACATAATTAGGTCAGGTAC 58.390 37.037 14.67 10.20 0.00 3.34
846 856 8.322828 TGCTGTAAAACATAATTAGGTCAGGTA 58.677 33.333 14.67 0.71 0.00 3.08
847 857 7.172342 TGCTGTAAAACATAATTAGGTCAGGT 58.828 34.615 14.67 1.45 0.00 4.00
848 858 7.624360 TGCTGTAAAACATAATTAGGTCAGG 57.376 36.000 14.67 2.08 0.00 3.86
849 859 8.064222 CGATGCTGTAAAACATAATTAGGTCAG 58.936 37.037 2.81 7.63 0.00 3.51
850 860 7.551262 ACGATGCTGTAAAACATAATTAGGTCA 59.449 33.333 2.81 0.00 0.00 4.02
851 861 7.916552 ACGATGCTGTAAAACATAATTAGGTC 58.083 34.615 2.81 0.00 0.00 3.85
852 862 7.859325 ACGATGCTGTAAAACATAATTAGGT 57.141 32.000 0.00 0.00 0.00 3.08
853 863 9.811655 CATACGATGCTGTAAAACATAATTAGG 57.188 33.333 0.00 0.00 0.00 2.69
856 866 8.128582 CCACATACGATGCTGTAAAACATAATT 58.871 33.333 0.00 0.00 0.00 1.40
857 867 7.282224 ACCACATACGATGCTGTAAAACATAAT 59.718 33.333 0.00 0.00 0.00 1.28
858 868 6.596106 ACCACATACGATGCTGTAAAACATAA 59.404 34.615 0.00 0.00 0.00 1.90
859 869 6.110033 ACCACATACGATGCTGTAAAACATA 58.890 36.000 0.00 0.00 0.00 2.29
860 870 4.941263 ACCACATACGATGCTGTAAAACAT 59.059 37.500 0.00 0.00 0.00 2.71
861 871 4.320023 ACCACATACGATGCTGTAAAACA 58.680 39.130 0.00 0.00 0.00 2.83
862 872 4.939509 ACCACATACGATGCTGTAAAAC 57.060 40.909 0.00 0.00 0.00 2.43
863 873 5.480205 TGTACCACATACGATGCTGTAAAA 58.520 37.500 0.00 0.00 36.47 1.52
864 874 5.074584 TGTACCACATACGATGCTGTAAA 57.925 39.130 0.00 0.00 36.47 2.01
865 875 4.158949 ACTGTACCACATACGATGCTGTAA 59.841 41.667 0.00 0.00 36.47 2.41
866 876 3.697542 ACTGTACCACATACGATGCTGTA 59.302 43.478 0.00 0.00 36.47 2.74
867 877 2.496070 ACTGTACCACATACGATGCTGT 59.504 45.455 0.00 0.00 36.47 4.40
868 878 3.165058 ACTGTACCACATACGATGCTG 57.835 47.619 0.00 0.00 36.47 4.41
869 879 3.952323 ACTACTGTACCACATACGATGCT 59.048 43.478 0.00 0.00 36.47 3.79
870 880 4.303086 ACTACTGTACCACATACGATGC 57.697 45.455 0.00 0.00 36.47 3.91
871 881 8.867112 AAATTACTACTGTACCACATACGATG 57.133 34.615 0.00 0.00 36.47 3.84
872 882 8.910944 AGAAATTACTACTGTACCACATACGAT 58.089 33.333 0.00 0.00 36.47 3.73
873 883 8.284945 AGAAATTACTACTGTACCACATACGA 57.715 34.615 0.00 0.00 36.47 3.43
874 884 8.186163 TGAGAAATTACTACTGTACCACATACG 58.814 37.037 0.00 0.00 36.47 3.06
875 885 9.865321 TTGAGAAATTACTACTGTACCACATAC 57.135 33.333 0.00 0.00 0.00 2.39
877 887 9.787435 TTTTGAGAAATTACTACTGTACCACAT 57.213 29.630 0.00 0.00 0.00 3.21
878 888 9.616156 TTTTTGAGAAATTACTACTGTACCACA 57.384 29.630 0.00 0.00 0.00 4.17
1008 1020 1.953311 GCGGGGACAGCCATTTTCTTA 60.953 52.381 0.00 0.00 35.15 2.10
1241 1253 1.897398 GCGCATTTCGTCGAACACCT 61.897 55.000 7.29 0.00 41.07 4.00
1272 1284 1.137825 GAGCGAGTTCCAGGAGACG 59.862 63.158 7.39 7.39 0.00 4.18
1273 1285 0.820871 ATGAGCGAGTTCCAGGAGAC 59.179 55.000 0.00 0.00 0.00 3.36
1336 1348 3.084579 CATCCGTCTGAACTGCGC 58.915 61.111 0.00 0.00 0.00 6.09
1337 1349 1.446792 AGCATCCGTCTGAACTGCG 60.447 57.895 0.00 0.00 37.88 5.18
1338 1350 1.975363 GCAGCATCCGTCTGAACTGC 61.975 60.000 6.81 6.81 44.75 4.40
1488 1500 3.542676 ACCAGTGCGTTCCCGACA 61.543 61.111 0.00 0.00 35.63 4.35
1489 1501 3.041940 CACCAGTGCGTTCCCGAC 61.042 66.667 0.00 0.00 35.63 4.79
1500 1512 1.874345 CGAAGTAGGCGGTCACCAGT 61.874 60.000 0.00 0.00 0.00 4.00
1503 1515 1.139095 CTCGAAGTAGGCGGTCACC 59.861 63.158 0.00 0.00 0.00 4.02
1564 1576 3.232213 TGTAATGACGTTCCTCTCTGC 57.768 47.619 0.00 0.00 0.00 4.26
1581 1593 1.269723 GAGATCATCGCCGTCCATGTA 59.730 52.381 0.00 0.00 0.00 2.29
1602 1614 3.496875 CTCTGCTCGAGCCATCCCG 62.497 68.421 33.23 14.75 41.18 5.14
1639 1651 2.096218 GCCTCATCTGTCGAAACAACAC 60.096 50.000 0.00 0.00 34.24 3.32
1665 1677 2.258286 GCATTGTTGGCGTCCACC 59.742 61.111 0.00 0.00 30.78 4.61
1827 1839 4.411540 ACACTCAGAGCATCCTCCATTAAT 59.588 41.667 0.00 0.00 38.96 1.40
1920 1932 1.355066 CGAACGCCTTCTCTTCCAGC 61.355 60.000 0.00 0.00 0.00 4.85
1948 1960 1.599047 CTTCACCCGCCATCTCAGT 59.401 57.895 0.00 0.00 0.00 3.41
2076 2088 4.631131 TGCAGACATATATGTTCCTTCCG 58.369 43.478 19.19 3.57 41.95 4.30
2151 2163 0.036388 TGGGCGTCTCATCAAAGACC 60.036 55.000 0.00 0.00 42.23 3.85
2154 2166 2.672961 TACTGGGCGTCTCATCAAAG 57.327 50.000 0.00 0.00 0.00 2.77
2157 2169 3.071479 GTTTTTACTGGGCGTCTCATCA 58.929 45.455 0.00 0.00 0.00 3.07
2172 2184 6.106673 GGAGTTCCATGAGATCGAGTTTTTA 58.893 40.000 0.00 0.00 35.64 1.52
2175 2187 3.515502 TGGAGTTCCATGAGATCGAGTTT 59.484 43.478 0.00 0.00 42.01 2.66
2196 2208 2.630317 GCGAAGGCTGCGATGATG 59.370 61.111 21.50 0.00 35.83 3.07
2211 2223 3.853330 CCTTGACCATGTCGCGCG 61.853 66.667 26.76 26.76 34.95 6.86
2217 2229 3.392616 AGACTTCAGAACCTTGACCATGT 59.607 43.478 0.00 0.00 0.00 3.21
2448 2460 3.002791 GTCCTCGATGAATGACTTTGCA 58.997 45.455 0.00 0.00 0.00 4.08
2531 2543 2.781681 TTTCCCGATCTCCAAGTTCC 57.218 50.000 0.00 0.00 0.00 3.62
2770 2782 2.014857 CACATCATCAACAGGAGCAGG 58.985 52.381 0.00 0.00 0.00 4.85
2867 2879 0.799534 GAATCAAGCATGCACGCACC 60.800 55.000 21.98 0.71 0.00 5.01
2869 2881 0.169451 CAGAATCAAGCATGCACGCA 59.831 50.000 21.98 0.23 0.00 5.24
2870 2882 0.448990 TCAGAATCAAGCATGCACGC 59.551 50.000 21.98 0.00 0.00 5.34
2871 2883 2.716398 CATCAGAATCAAGCATGCACG 58.284 47.619 21.98 10.41 0.00 5.34
2878 2891 8.944029 ACTATATTATGTGCATCAGAATCAAGC 58.056 33.333 10.88 0.00 38.63 4.01
3003 3092 1.596260 CACTCGCCATGAAGCATACAG 59.404 52.381 0.00 0.00 0.00 2.74
3092 3191 0.700564 ACCAATCCACCAGCATCTGT 59.299 50.000 0.00 0.00 0.00 3.41
3128 3230 1.163554 CTGCTCAAACCTCTGCTTCC 58.836 55.000 0.00 0.00 0.00 3.46
3129 3231 0.520847 GCTGCTCAAACCTCTGCTTC 59.479 55.000 0.00 0.00 0.00 3.86
3130 3232 1.233285 CGCTGCTCAAACCTCTGCTT 61.233 55.000 0.00 0.00 0.00 3.91
3159 3261 1.603456 TCTTTGATGGCGCTGTCAAA 58.397 45.000 26.81 26.81 40.81 2.69
3166 3268 3.705043 ATTGATCTTCTTTGATGGCGC 57.295 42.857 0.00 0.00 0.00 6.53
3209 3324 9.754382 AAACGTCTTACATTAAGTTACAGAGAA 57.246 29.630 0.00 0.00 37.10 2.87
3240 3355 5.416947 ACAAGACGTTTTTAGAGTCAGTGT 58.583 37.500 0.00 0.00 37.36 3.55
3241 3356 5.968387 ACAAGACGTTTTTAGAGTCAGTG 57.032 39.130 0.00 0.00 37.36 3.66
3242 3357 8.483307 TTTTACAAGACGTTTTTAGAGTCAGT 57.517 30.769 0.00 0.00 37.36 3.41
3243 3358 8.814235 TCTTTTACAAGACGTTTTTAGAGTCAG 58.186 33.333 0.00 0.00 33.80 3.51
3244 3359 8.706492 TCTTTTACAAGACGTTTTTAGAGTCA 57.294 30.769 0.00 0.00 33.80 3.41
3269 3391 3.263425 CCCCTTGTGTACACCTCTGTAAT 59.737 47.826 22.91 0.00 34.53 1.89
3280 3402 4.913784 TCCAAAATAGACCCCTTGTGTAC 58.086 43.478 0.00 0.00 0.00 2.90
3281 3403 5.251932 TGATCCAAAATAGACCCCTTGTGTA 59.748 40.000 0.00 0.00 0.00 2.90
3282 3404 4.044065 TGATCCAAAATAGACCCCTTGTGT 59.956 41.667 0.00 0.00 0.00 3.72
3283 3405 4.399303 GTGATCCAAAATAGACCCCTTGTG 59.601 45.833 0.00 0.00 0.00 3.33
3284 3406 4.044065 TGTGATCCAAAATAGACCCCTTGT 59.956 41.667 0.00 0.00 0.00 3.16
3285 3407 4.599041 TGTGATCCAAAATAGACCCCTTG 58.401 43.478 0.00 0.00 0.00 3.61
3286 3408 4.946160 TGTGATCCAAAATAGACCCCTT 57.054 40.909 0.00 0.00 0.00 3.95
3288 3410 4.792068 TCATGTGATCCAAAATAGACCCC 58.208 43.478 0.00 0.00 0.00 4.95
3336 3458 7.988737 TCCATCTTCAAAATTAGCACTACATG 58.011 34.615 0.00 0.00 0.00 3.21
3343 3465 7.523293 TTGTCTTCCATCTTCAAAATTAGCA 57.477 32.000 0.00 0.00 0.00 3.49
3345 3467 9.282247 CGATTTGTCTTCCATCTTCAAAATTAG 57.718 33.333 0.00 0.00 32.99 1.73
3353 3475 4.331168 CAGACCGATTTGTCTTCCATCTTC 59.669 45.833 0.00 0.00 42.92 2.87
3354 3476 4.256920 CAGACCGATTTGTCTTCCATCTT 58.743 43.478 0.00 0.00 42.92 2.40
3372 3494 6.012658 TGAACCAAATTCAGCATTACAGAC 57.987 37.500 0.00 0.00 42.62 3.51
3413 4605 1.532007 GTGTCATCCCACGCGTTTAAA 59.468 47.619 10.22 0.00 0.00 1.52
3456 4657 1.650825 AAACCAAAAACTGCAAGGCG 58.349 45.000 0.00 0.00 39.30 5.52
3473 4674 2.420967 GGGCACGGGCTAGAATAGAAAA 60.421 50.000 10.74 0.00 42.77 2.29
3501 4702 7.136822 AGCTGGGTGTACATAGAAAATGATA 57.863 36.000 0.00 0.00 0.00 2.15
3532 4733 6.275494 AGCATGATGATCAATGTGTTTTCA 57.725 33.333 0.00 0.00 0.00 2.69
3538 4739 5.432885 TTGCTAGCATGATGATCAATGTG 57.567 39.130 20.13 0.00 0.00 3.21
3565 4766 1.405105 CATGGCGTCTTTAACATGGGG 59.595 52.381 0.00 0.00 37.61 4.96
3591 4792 1.527370 GGGGTCCGCTAGAATTGCT 59.473 57.895 0.00 0.00 0.00 3.91
3592 4793 1.887707 CGGGGTCCGCTAGAATTGC 60.888 63.158 4.18 0.00 41.17 3.56
3593 4794 4.438346 CGGGGTCCGCTAGAATTG 57.562 61.111 4.18 0.00 41.17 2.32
3603 4804 4.337060 GCGTGTTTTGCGGGGTCC 62.337 66.667 0.00 0.00 0.00 4.46
3604 4805 3.536498 CTGCGTGTTTTGCGGGGTC 62.536 63.158 0.00 0.00 35.04 4.46
3605 4806 3.591835 CTGCGTGTTTTGCGGGGT 61.592 61.111 0.00 0.00 35.04 4.95
3606 4807 3.283684 TCTGCGTGTTTTGCGGGG 61.284 61.111 0.00 0.00 39.23 5.73
3607 4808 2.051345 GTCTGCGTGTTTTGCGGG 60.051 61.111 0.00 0.00 39.23 6.13
3608 4809 2.051345 GGTCTGCGTGTTTTGCGG 60.051 61.111 0.00 0.00 40.13 5.69
3609 4810 2.051345 GGGTCTGCGTGTTTTGCG 60.051 61.111 0.00 0.00 34.24 4.85
3610 4811 2.051345 CGGGTCTGCGTGTTTTGC 60.051 61.111 0.00 0.00 0.00 3.68
3611 4812 2.051345 GCGGGTCTGCGTGTTTTG 60.051 61.111 0.00 0.00 0.00 2.44
3612 4813 1.658686 TTTGCGGGTCTGCGTGTTTT 61.659 50.000 0.00 0.00 37.81 2.43
3613 4814 1.658686 TTTTGCGGGTCTGCGTGTTT 61.659 50.000 0.00 0.00 37.81 2.83
3614 4815 1.452145 ATTTTGCGGGTCTGCGTGTT 61.452 50.000 0.00 0.00 37.81 3.32
3615 4816 1.452145 AATTTTGCGGGTCTGCGTGT 61.452 50.000 0.00 0.00 37.81 4.49
3616 4817 0.729140 GAATTTTGCGGGTCTGCGTG 60.729 55.000 0.00 0.00 37.81 5.34
3617 4818 1.579429 GAATTTTGCGGGTCTGCGT 59.421 52.632 0.00 0.00 37.81 5.24
3618 4819 1.154035 GGAATTTTGCGGGTCTGCG 60.154 57.895 0.00 0.00 37.81 5.18
3619 4820 1.154035 CGGAATTTTGCGGGTCTGC 60.154 57.895 0.00 0.00 38.41 4.26
3626 4827 2.418628 ACATACTCACCGGAATTTTGCG 59.581 45.455 9.46 0.00 41.91 4.85
3627 4828 3.427503 CCACATACTCACCGGAATTTTGC 60.428 47.826 9.46 0.00 0.00 3.68
3628 4829 3.128589 CCCACATACTCACCGGAATTTTG 59.871 47.826 9.46 0.00 0.00 2.44
3629 4830 3.352648 CCCACATACTCACCGGAATTTT 58.647 45.455 9.46 0.00 0.00 1.82
3630 4831 2.944094 GCCCACATACTCACCGGAATTT 60.944 50.000 9.46 0.00 0.00 1.82
3631 4832 1.408266 GCCCACATACTCACCGGAATT 60.408 52.381 9.46 0.00 0.00 2.17
3632 4833 0.180406 GCCCACATACTCACCGGAAT 59.820 55.000 9.46 0.00 0.00 3.01
3633 4834 0.907704 AGCCCACATACTCACCGGAA 60.908 55.000 9.46 0.00 0.00 4.30
3634 4835 1.305802 AGCCCACATACTCACCGGA 60.306 57.895 9.46 0.00 0.00 5.14
3635 4836 1.144057 GAGCCCACATACTCACCGG 59.856 63.158 0.00 0.00 32.98 5.28
3636 4837 1.226974 CGAGCCCACATACTCACCG 60.227 63.158 0.00 0.00 32.98 4.94
3637 4838 1.144057 CCGAGCCCACATACTCACC 59.856 63.158 0.00 0.00 32.98 4.02
3638 4839 1.521681 GCCGAGCCCACATACTCAC 60.522 63.158 0.00 0.00 32.98 3.51
3639 4840 2.731571 GGCCGAGCCCACATACTCA 61.732 63.158 3.73 0.00 44.06 3.41
3640 4841 2.109181 GGCCGAGCCCACATACTC 59.891 66.667 3.73 0.00 44.06 2.59
3653 4854 1.933115 CTGACCGGAAAATTGGGCCG 61.933 60.000 9.46 6.85 44.42 6.13
3654 4855 0.610785 TCTGACCGGAAAATTGGGCC 60.611 55.000 9.46 0.00 29.51 5.80
3655 4856 1.067846 GTTCTGACCGGAAAATTGGGC 60.068 52.381 9.46 0.00 0.00 5.36
3656 4857 2.228822 CTGTTCTGACCGGAAAATTGGG 59.771 50.000 9.46 0.00 0.00 4.12
3657 4858 3.146066 TCTGTTCTGACCGGAAAATTGG 58.854 45.455 9.46 0.00 0.00 3.16
3658 4859 3.365364 GCTCTGTTCTGACCGGAAAATTG 60.365 47.826 9.46 0.00 0.00 2.32
3659 4860 2.814336 GCTCTGTTCTGACCGGAAAATT 59.186 45.455 9.46 0.00 0.00 1.82
3660 4861 2.427506 GCTCTGTTCTGACCGGAAAAT 58.572 47.619 9.46 0.00 0.00 1.82
3661 4862 1.542547 GGCTCTGTTCTGACCGGAAAA 60.543 52.381 9.46 0.00 0.00 2.29
3662 4863 0.034896 GGCTCTGTTCTGACCGGAAA 59.965 55.000 9.46 0.00 0.00 3.13
3663 4864 1.671742 GGCTCTGTTCTGACCGGAA 59.328 57.895 9.46 0.00 0.00 4.30
3664 4865 2.283529 GGGCTCTGTTCTGACCGGA 61.284 63.158 9.46 0.00 0.00 5.14
3665 4866 2.266055 GGGCTCTGTTCTGACCGG 59.734 66.667 0.00 0.00 0.00 5.28
3666 4867 1.374758 GTGGGCTCTGTTCTGACCG 60.375 63.158 0.00 0.00 0.00 4.79
3667 4868 0.326264 ATGTGGGCTCTGTTCTGACC 59.674 55.000 0.00 0.00 0.00 4.02
3668 4869 2.234908 AGTATGTGGGCTCTGTTCTGAC 59.765 50.000 0.00 0.00 0.00 3.51
3669 4870 2.497675 GAGTATGTGGGCTCTGTTCTGA 59.502 50.000 0.00 0.00 0.00 3.27
3670 4871 2.736719 CGAGTATGTGGGCTCTGTTCTG 60.737 54.545 0.00 0.00 0.00 3.02
3671 4872 1.478510 CGAGTATGTGGGCTCTGTTCT 59.521 52.381 0.00 0.00 0.00 3.01
3672 4873 1.927895 CGAGTATGTGGGCTCTGTTC 58.072 55.000 0.00 0.00 0.00 3.18
3673 4874 0.108138 GCGAGTATGTGGGCTCTGTT 60.108 55.000 0.00 0.00 0.00 3.16
3674 4875 1.517832 GCGAGTATGTGGGCTCTGT 59.482 57.895 0.00 0.00 0.00 3.41
3675 4876 1.227380 GGCGAGTATGTGGGCTCTG 60.227 63.158 0.00 0.00 0.00 3.35
3676 4877 1.381872 AGGCGAGTATGTGGGCTCT 60.382 57.895 0.00 0.00 34.34 4.09
3677 4878 1.227380 CAGGCGAGTATGTGGGCTC 60.227 63.158 0.00 0.00 37.73 4.70
3678 4879 2.735772 CCAGGCGAGTATGTGGGCT 61.736 63.158 0.00 0.00 40.77 5.19
3679 4880 2.203070 CCAGGCGAGTATGTGGGC 60.203 66.667 0.00 0.00 0.00 5.36
3680 4881 2.203070 GCCAGGCGAGTATGTGGG 60.203 66.667 0.00 0.00 0.00 4.61
3681 4882 2.203070 GGCCAGGCGAGTATGTGG 60.203 66.667 5.00 0.00 0.00 4.17
3682 4883 2.203070 GGGCCAGGCGAGTATGTG 60.203 66.667 4.39 0.00 0.00 3.21
3683 4884 3.849951 CGGGCCAGGCGAGTATGT 61.850 66.667 4.39 0.00 0.00 2.29
3690 4891 3.588057 AAAATTTGCGGGCCAGGCG 62.588 57.895 4.39 0.00 0.00 5.52
3691 4892 1.302431 AAAAATTTGCGGGCCAGGC 60.302 52.632 4.39 1.26 0.00 4.85
3730 4931 2.814183 GATATAGCGGTCGGGGCGTG 62.814 65.000 0.00 0.00 35.00 5.34
3731 4932 2.599578 ATATAGCGGTCGGGGCGT 60.600 61.111 0.00 0.00 35.00 5.68
3732 4933 2.181021 GATATAGCGGTCGGGGCG 59.819 66.667 0.00 0.00 35.00 6.13
3733 4934 1.215647 CAGATATAGCGGTCGGGGC 59.784 63.158 0.00 0.00 0.00 5.80
3734 4935 1.215647 GCAGATATAGCGGTCGGGG 59.784 63.158 0.00 0.00 0.00 5.73
3735 4936 4.891566 GCAGATATAGCGGTCGGG 57.108 61.111 0.00 0.00 0.00 5.14
3742 4943 1.063806 CGCAGAACCGCAGATATAGC 58.936 55.000 0.00 0.00 0.00 2.97
3743 4944 2.030717 AGTCGCAGAACCGCAGATATAG 60.031 50.000 0.00 0.00 39.69 1.31
3744 4945 1.954382 AGTCGCAGAACCGCAGATATA 59.046 47.619 0.00 0.00 39.69 0.86
3745 4946 0.747255 AGTCGCAGAACCGCAGATAT 59.253 50.000 0.00 0.00 39.69 1.63
3746 4947 0.100682 GAGTCGCAGAACCGCAGATA 59.899 55.000 0.00 0.00 39.69 1.98
3747 4948 1.153745 GAGTCGCAGAACCGCAGAT 60.154 57.895 0.00 0.00 39.69 2.90
3748 4949 2.258591 GAGTCGCAGAACCGCAGA 59.741 61.111 0.00 0.00 39.69 4.26
3749 4950 3.175240 CGAGTCGCAGAACCGCAG 61.175 66.667 0.00 0.00 39.69 5.18
3750 4951 2.964438 AAACGAGTCGCAGAACCGCA 62.964 55.000 13.59 0.00 39.69 5.69
3751 4952 2.308039 AAACGAGTCGCAGAACCGC 61.308 57.895 13.59 0.00 39.69 5.68
3752 4953 1.487231 CAAACGAGTCGCAGAACCG 59.513 57.895 13.59 0.00 39.69 4.44
3753 4954 1.204312 GCAAACGAGTCGCAGAACC 59.796 57.895 13.59 0.00 39.69 3.62
3754 4955 1.931551 TGCAAACGAGTCGCAGAAC 59.068 52.632 13.59 0.00 39.69 3.01
3755 4956 4.429213 TGCAAACGAGTCGCAGAA 57.571 50.000 13.59 0.00 39.69 3.02
3758 4959 1.954146 GACCTGCAAACGAGTCGCA 60.954 57.895 13.59 0.91 0.00 5.10
3759 4960 2.668280 GGACCTGCAAACGAGTCGC 61.668 63.158 13.59 0.00 0.00 5.19
3760 4961 0.878523 TTGGACCTGCAAACGAGTCG 60.879 55.000 11.85 11.85 0.00 4.18
3761 4962 1.002792 GTTTGGACCTGCAAACGAGTC 60.003 52.381 6.66 0.00 32.65 3.36
3762 4963 1.021968 GTTTGGACCTGCAAACGAGT 58.978 50.000 6.66 0.00 32.65 4.18
3763 4964 0.310854 GGTTTGGACCTGCAAACGAG 59.689 55.000 14.06 0.00 42.99 4.18
3764 4965 1.104577 GGGTTTGGACCTGCAAACGA 61.105 55.000 14.06 0.00 45.75 3.85
3765 4966 1.106944 AGGGTTTGGACCTGCAAACG 61.107 55.000 14.06 0.00 45.75 3.60
3766 4967 1.989706 TAGGGTTTGGACCTGCAAAC 58.010 50.000 12.58 12.58 45.75 2.93
3767 4968 2.556559 GGATAGGGTTTGGACCTGCAAA 60.557 50.000 0.00 0.00 45.75 3.68
3768 4969 1.005450 GGATAGGGTTTGGACCTGCAA 59.995 52.381 0.00 0.00 45.75 4.08
3769 4970 0.623723 GGATAGGGTTTGGACCTGCA 59.376 55.000 0.00 0.00 45.75 4.41
3770 4971 0.106669 GGGATAGGGTTTGGACCTGC 60.107 60.000 0.00 0.00 45.75 4.85
3771 4972 0.551396 GGGGATAGGGTTTGGACCTG 59.449 60.000 0.00 0.00 45.75 4.00
3772 4973 0.626574 GGGGGATAGGGTTTGGACCT 60.627 60.000 0.00 0.00 45.75 3.85
3773 4974 1.928199 GGGGGATAGGGTTTGGACC 59.072 63.158 0.00 0.00 45.75 4.46
3774 4975 1.530283 CGGGGGATAGGGTTTGGAC 59.470 63.158 0.00 0.00 0.00 4.02
3775 4976 2.380285 GCGGGGGATAGGGTTTGGA 61.380 63.158 0.00 0.00 0.00 3.53
3776 4977 2.194868 GCGGGGGATAGGGTTTGG 59.805 66.667 0.00 0.00 0.00 3.28
3777 4978 2.194868 GGCGGGGGATAGGGTTTG 59.805 66.667 0.00 0.00 0.00 2.93
3778 4979 3.485745 CGGCGGGGGATAGGGTTT 61.486 66.667 0.00 0.00 0.00 3.27
3801 5002 3.682292 AAGGGGAATCGCGTGGCTC 62.682 63.158 5.77 0.00 0.00 4.70
3802 5003 3.268103 AAAGGGGAATCGCGTGGCT 62.268 57.895 5.77 0.00 0.00 4.75
3803 5004 2.750237 AAAGGGGAATCGCGTGGC 60.750 61.111 5.77 0.00 0.00 5.01
3804 5005 2.112815 GGAAAGGGGAATCGCGTGG 61.113 63.158 5.77 0.00 0.00 4.94
3805 5006 2.112815 GGGAAAGGGGAATCGCGTG 61.113 63.158 5.77 0.00 0.00 5.34
3806 5007 1.921869 ATGGGAAAGGGGAATCGCGT 61.922 55.000 5.77 0.00 0.00 6.01
3807 5008 1.152963 ATGGGAAAGGGGAATCGCG 60.153 57.895 0.00 0.00 0.00 5.87
3808 5009 0.183731 AGATGGGAAAGGGGAATCGC 59.816 55.000 0.00 0.00 0.00 4.58
3809 5010 2.092429 TGAAGATGGGAAAGGGGAATCG 60.092 50.000 0.00 0.00 0.00 3.34
3810 5011 3.291584 GTGAAGATGGGAAAGGGGAATC 58.708 50.000 0.00 0.00 0.00 2.52
3811 5012 2.654385 TGTGAAGATGGGAAAGGGGAAT 59.346 45.455 0.00 0.00 0.00 3.01
3812 5013 2.069775 TGTGAAGATGGGAAAGGGGAA 58.930 47.619 0.00 0.00 0.00 3.97
3813 5014 1.753903 TGTGAAGATGGGAAAGGGGA 58.246 50.000 0.00 0.00 0.00 4.81
3814 5015 2.834638 ATGTGAAGATGGGAAAGGGG 57.165 50.000 0.00 0.00 0.00 4.79
3815 5016 5.482006 GAAAAATGTGAAGATGGGAAAGGG 58.518 41.667 0.00 0.00 0.00 3.95
3816 5017 5.163513 CGAAAAATGTGAAGATGGGAAAGG 58.836 41.667 0.00 0.00 0.00 3.11
3817 5018 5.772521 ACGAAAAATGTGAAGATGGGAAAG 58.227 37.500 0.00 0.00 0.00 2.62
3818 5019 5.561919 CGACGAAAAATGTGAAGATGGGAAA 60.562 40.000 0.00 0.00 0.00 3.13
3819 5020 4.083537 CGACGAAAAATGTGAAGATGGGAA 60.084 41.667 0.00 0.00 0.00 3.97
3820 5021 3.435327 CGACGAAAAATGTGAAGATGGGA 59.565 43.478 0.00 0.00 0.00 4.37
3821 5022 3.747193 CGACGAAAAATGTGAAGATGGG 58.253 45.455 0.00 0.00 0.00 4.00
3822 5023 3.163594 GCGACGAAAAATGTGAAGATGG 58.836 45.455 0.00 0.00 0.00 3.51
3823 5024 3.163594 GGCGACGAAAAATGTGAAGATG 58.836 45.455 0.00 0.00 0.00 2.90
3824 5025 3.471495 GGCGACGAAAAATGTGAAGAT 57.529 42.857 0.00 0.00 0.00 2.40
3825 5026 2.961522 GGCGACGAAAAATGTGAAGA 57.038 45.000 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.