Multiple sequence alignment - TraesCS1A01G099600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G099600 chr1A 100.000 4393 0 0 1 4393 96363176 96358784 0.000000e+00 8113.0
1 TraesCS1A01G099600 chr1A 88.060 268 26 3 1 268 385669927 385670188 3.300000e-81 313.0
2 TraesCS1A01G099600 chr1A 77.899 457 87 9 286 736 65236166 65236614 5.600000e-69 272.0
3 TraesCS1A01G099600 chr1D 91.270 3803 245 35 287 4040 79093491 79097255 0.000000e+00 5103.0
4 TraesCS1A01G099600 chr1D 91.525 236 19 1 47 282 3959536 3959770 1.520000e-84 324.0
5 TraesCS1A01G099600 chr1B 92.290 2659 161 17 1007 3651 130000921 130003549 0.000000e+00 3735.0
6 TraesCS1A01G099600 chr1B 89.535 258 24 3 10 267 171226114 171225860 1.520000e-84 324.0
7 TraesCS1A01G099600 chr3D 79.051 506 97 8 286 784 286853825 286854328 5.440000e-89 339.0
8 TraesCS1A01G099600 chr3D 87.368 285 17 7 11 286 511530327 511530601 4.270000e-80 309.0
9 TraesCS1A01G099600 chr3D 78.873 426 84 5 286 709 360392883 360393304 2.590000e-72 283.0
10 TraesCS1A01G099600 chr3D 78.091 461 74 13 3473 3909 496148969 496148512 2.600000e-67 267.0
11 TraesCS1A01G099600 chr3D 82.946 258 30 8 11 262 39592423 39592174 2.060000e-53 220.0
12 TraesCS1A01G099600 chr3D 82.963 135 13 1 3916 4040 496148437 496148303 3.590000e-21 113.0
13 TraesCS1A01G099600 chr2A 88.489 278 26 3 10 282 105518313 105518037 9.110000e-87 331.0
14 TraesCS1A01G099600 chr2A 77.342 459 91 11 286 738 10632881 10633332 4.360000e-65 259.0
15 TraesCS1A01G099600 chr3A 79.610 461 68 12 3472 3909 635484993 635484536 1.530000e-79 307.0
16 TraesCS1A01G099600 chr3A 83.704 135 12 5 3916 4040 635484461 635484327 7.720000e-23 119.0
17 TraesCS1A01G099600 chr3A 81.356 118 12 2 3916 4023 635392294 635392177 2.180000e-13 87.9
18 TraesCS1A01G099600 chr6D 78.993 457 85 9 286 738 10433027 10432578 7.140000e-78 302.0
19 TraesCS1A01G099600 chr6D 90.566 53 5 0 4341 4393 5085115 5085063 2.190000e-08 71.3
20 TraesCS1A01G099600 chr7B 86.380 279 31 4 11 286 191527344 191527618 9.240000e-77 298.0
21 TraesCS1A01G099600 chr7B 85.926 270 33 3 1 268 591951851 591952117 2.590000e-72 283.0
22 TraesCS1A01G099600 chr7A 85.965 285 23 7 2 282 594413572 594413301 5.560000e-74 289.0
23 TraesCS1A01G099600 chr7A 76.634 505 83 21 287 784 71111373 71111849 3.390000e-61 246.0
24 TraesCS1A01G099600 chr6B 85.874 269 34 2 1 267 88181335 88181069 2.590000e-72 283.0
25 TraesCS1A01G099600 chr6B 77.632 456 95 7 286 738 146136081 146136532 2.010000e-68 270.0
26 TraesCS1A01G099600 chr6B 79.918 244 35 7 3491 3721 77914708 77914466 2.720000e-37 167.0
27 TraesCS1A01G099600 chr6B 79.918 244 35 6 3491 3721 78018224 78017982 2.720000e-37 167.0
28 TraesCS1A01G099600 chr6B 79.918 244 35 6 3491 3721 78049409 78049167 2.720000e-37 167.0
29 TraesCS1A01G099600 chr6B 79.508 244 36 6 3491 3721 78101973 78101731 1.260000e-35 161.0
30 TraesCS1A01G099600 chr6B 79.508 244 36 6 3491 3721 78121108 78120866 1.260000e-35 161.0
31 TraesCS1A01G099600 chr3B 77.574 437 91 7 288 718 665477533 665477098 1.570000e-64 257.0
32 TraesCS1A01G099600 chr3B 85.185 135 10 1 3916 4040 655309340 655309206 3.570000e-26 130.0
33 TraesCS1A01G099600 chr2B 78.065 155 29 3 24 176 788998548 788998397 4.680000e-15 93.5
34 TraesCS1A01G099600 chr6A 90.566 53 5 0 4341 4393 4544522 4544470 2.190000e-08 71.3
35 TraesCS1A01G099600 chrUn 83.333 66 11 0 4328 4393 62693322 62693257 1.320000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G099600 chr1A 96358784 96363176 4392 True 8113 8113 100.000 1 4393 1 chr1A.!!$R1 4392
1 TraesCS1A01G099600 chr1D 79093491 79097255 3764 False 5103 5103 91.270 287 4040 1 chr1D.!!$F2 3753
2 TraesCS1A01G099600 chr1B 130000921 130003549 2628 False 3735 3735 92.290 1007 3651 1 chr1B.!!$F1 2644
3 TraesCS1A01G099600 chr3D 286853825 286854328 503 False 339 339 79.051 286 784 1 chr3D.!!$F1 498
4 TraesCS1A01G099600 chr3A 635484327 635484993 666 True 213 307 81.657 3472 4040 2 chr3A.!!$R2 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 180 0.036448 TCGTAAAAATGACGGGCCCA 59.964 50.0 24.92 1.51 40.70 5.36 F
375 376 0.039437 CTTCAGCAGCAGCACAAAGG 60.039 55.0 3.17 0.00 45.49 3.11 F
824 829 0.098025 GAGGTCGCTCGTCTCTTCTG 59.902 60.0 7.63 0.00 0.00 3.02 F
830 835 0.387367 GCTCGTCTCTTCTGCACGAA 60.387 55.0 0.00 0.00 41.74 3.85 F
1729 1764 0.526662 GGAATGTCGTCTCGTGGACT 59.473 55.0 8.91 0.00 42.44 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1905 1940 1.548357 CCCATAGAGCCCCATCCTCG 61.548 65.000 0.00 0.0 34.56 4.63 R
2032 2067 2.178106 ACCAAGTACCATTGAACCCCAA 59.822 45.455 0.00 0.0 39.41 4.12 R
2764 2800 1.961793 TGCTGTAATAACATCCGCCC 58.038 50.000 0.00 0.0 34.37 6.13 R
2771 2807 4.319911 GGCACTTCGTTTGCTGTAATAACA 60.320 41.667 5.81 0.0 40.07 2.41 R
3392 3434 0.327191 GGGAGGAGGGACCAACCATA 60.327 60.000 8.55 0.0 42.04 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.554036 GCCTAGCCAAGCCCGAGG 62.554 72.222 0.00 0.00 0.00 4.63
55 56 2.600470 AAAAACTCAGGCCCGGGC 60.600 61.111 38.57 38.57 41.06 6.13
87 88 2.678580 CCATCGGGCCCGGTTTTT 60.679 61.111 42.36 20.07 40.25 1.94
122 123 3.161817 CGGACACGTAAAAGCCCG 58.838 61.111 0.00 0.00 34.81 6.13
123 124 2.385091 CGGACACGTAAAAGCCCGG 61.385 63.158 0.00 0.00 33.94 5.73
124 125 2.683859 GGACACGTAAAAGCCCGGC 61.684 63.158 0.00 0.00 0.00 6.13
125 126 3.018840 GACACGTAAAAGCCCGGCG 62.019 63.158 3.05 0.00 0.00 6.46
126 127 4.454717 CACGTAAAAGCCCGGCGC 62.455 66.667 0.00 0.00 37.98 6.53
158 159 3.717294 GCCGAGCCCCTTCAGGAA 61.717 66.667 0.00 0.00 38.24 3.36
159 160 3.077907 CCGAGCCCCTTCAGGAAA 58.922 61.111 0.00 0.00 38.24 3.13
160 161 1.609783 CCGAGCCCCTTCAGGAAAT 59.390 57.895 0.00 0.00 38.24 2.17
161 162 0.464554 CCGAGCCCCTTCAGGAAATC 60.465 60.000 0.00 0.00 38.24 2.17
162 163 0.811616 CGAGCCCCTTCAGGAAATCG 60.812 60.000 0.00 0.00 38.24 3.34
163 164 0.253327 GAGCCCCTTCAGGAAATCGT 59.747 55.000 0.00 0.00 38.24 3.73
164 165 1.485066 GAGCCCCTTCAGGAAATCGTA 59.515 52.381 0.00 0.00 38.24 3.43
165 166 1.913419 AGCCCCTTCAGGAAATCGTAA 59.087 47.619 0.00 0.00 38.24 3.18
166 167 2.307686 AGCCCCTTCAGGAAATCGTAAA 59.692 45.455 0.00 0.00 38.24 2.01
167 168 3.086282 GCCCCTTCAGGAAATCGTAAAA 58.914 45.455 0.00 0.00 38.24 1.52
168 169 3.508402 GCCCCTTCAGGAAATCGTAAAAA 59.492 43.478 0.00 0.00 38.24 1.94
169 170 4.159693 GCCCCTTCAGGAAATCGTAAAAAT 59.840 41.667 0.00 0.00 38.24 1.82
170 171 5.650543 CCCCTTCAGGAAATCGTAAAAATG 58.349 41.667 0.00 0.00 38.24 2.32
171 172 5.417580 CCCCTTCAGGAAATCGTAAAAATGA 59.582 40.000 0.00 0.00 38.24 2.57
172 173 6.322491 CCCTTCAGGAAATCGTAAAAATGAC 58.678 40.000 0.00 0.00 38.24 3.06
173 174 6.021596 CCTTCAGGAAATCGTAAAAATGACG 58.978 40.000 0.00 0.00 38.41 4.35
174 175 5.539582 TCAGGAAATCGTAAAAATGACGG 57.460 39.130 0.00 0.00 40.70 4.79
175 176 4.393680 TCAGGAAATCGTAAAAATGACGGG 59.606 41.667 0.00 0.00 40.70 5.28
176 177 3.128068 AGGAAATCGTAAAAATGACGGGC 59.872 43.478 0.00 0.00 40.70 6.13
177 178 3.431856 GAAATCGTAAAAATGACGGGCC 58.568 45.455 0.00 0.00 40.70 5.80
178 179 1.385528 ATCGTAAAAATGACGGGCCC 58.614 50.000 13.57 13.57 40.70 5.80
179 180 0.036448 TCGTAAAAATGACGGGCCCA 59.964 50.000 24.92 1.51 40.70 5.36
180 181 0.450184 CGTAAAAATGACGGGCCCAG 59.550 55.000 24.92 17.36 36.66 4.45
181 182 0.815095 GTAAAAATGACGGGCCCAGG 59.185 55.000 24.92 9.21 0.00 4.45
182 183 0.968393 TAAAAATGACGGGCCCAGGC 60.968 55.000 24.92 17.82 41.06 4.85
208 209 2.883386 CCATCAGGCTCAAAATCTAGGC 59.117 50.000 0.00 0.00 38.50 3.93
209 210 2.717639 TCAGGCTCAAAATCTAGGCC 57.282 50.000 0.00 0.00 42.74 5.19
210 211 1.212935 TCAGGCTCAAAATCTAGGCCC 59.787 52.381 0.00 0.00 43.36 5.80
211 212 0.181350 AGGCTCAAAATCTAGGCCCG 59.819 55.000 0.00 0.00 43.36 6.13
212 213 0.180406 GGCTCAAAATCTAGGCCCGA 59.820 55.000 0.00 0.00 37.12 5.14
213 214 1.587547 GCTCAAAATCTAGGCCCGAG 58.412 55.000 0.00 0.00 0.00 4.63
214 215 1.587547 CTCAAAATCTAGGCCCGAGC 58.412 55.000 0.00 0.00 38.76 5.03
259 260 3.428282 CCGGGTCGGGCTTTTTCG 61.428 66.667 0.00 0.00 44.15 3.46
260 261 3.428282 CGGGTCGGGCTTTTTCGG 61.428 66.667 0.00 0.00 0.00 4.30
261 262 3.060000 GGGTCGGGCTTTTTCGGG 61.060 66.667 0.00 0.00 0.00 5.14
262 263 3.744719 GGTCGGGCTTTTTCGGGC 61.745 66.667 0.00 0.00 0.00 6.13
263 264 3.744719 GTCGGGCTTTTTCGGGCC 61.745 66.667 0.00 0.00 46.89 5.80
269 270 2.989253 CTTTTTCGGGCCGGGCTT 60.989 61.111 28.80 0.00 0.00 4.35
270 271 2.986979 TTTTTCGGGCCGGGCTTC 60.987 61.111 28.80 11.34 0.00 3.86
282 283 4.066139 GGCTTCCCATGGCCAGGT 62.066 66.667 17.55 0.00 46.84 4.00
283 284 2.689691 GGCTTCCCATGGCCAGGTA 61.690 63.158 17.55 3.27 46.84 3.08
284 285 1.538666 GCTTCCCATGGCCAGGTAT 59.461 57.895 17.55 0.00 0.00 2.73
305 306 8.461033 AGGTATAGATGGAAGAGAACTAGGATT 58.539 37.037 0.00 0.00 0.00 3.01
310 311 4.863548 TGGAAGAGAACTAGGATTCGGTA 58.136 43.478 0.00 0.00 33.57 4.02
311 312 5.266788 TGGAAGAGAACTAGGATTCGGTAA 58.733 41.667 0.00 0.00 33.57 2.85
348 349 3.485346 AACCGCCCGAGGAAAGCAA 62.485 57.895 0.00 0.00 34.73 3.91
350 351 3.127533 CGCCCGAGGAAAGCAAGG 61.128 66.667 0.00 0.00 0.00 3.61
375 376 0.039437 CTTCAGCAGCAGCACAAAGG 60.039 55.000 3.17 0.00 45.49 3.11
386 387 2.294512 CAGCACAAAGGAAAAGGAGGAC 59.705 50.000 0.00 0.00 0.00 3.85
390 391 3.897505 CACAAAGGAAAAGGAGGACCAAT 59.102 43.478 0.00 0.00 38.94 3.16
394 395 5.333566 AAGGAAAAGGAGGACCAATAACA 57.666 39.130 0.00 0.00 38.94 2.41
412 413 7.759886 CCAATAACAATAGATCATACCGACGAT 59.240 37.037 0.00 0.00 0.00 3.73
478 479 2.603473 TAGCCCAGCCAGTGTCGT 60.603 61.111 0.00 0.00 0.00 4.34
518 520 2.561885 CGCGACCTCAACGAGACT 59.438 61.111 0.00 0.00 32.88 3.24
523 525 0.959372 GACCTCAACGAGACTCGGGA 60.959 60.000 27.39 21.67 45.59 5.14
524 526 0.323542 ACCTCAACGAGACTCGGGAT 60.324 55.000 27.39 11.50 45.59 3.85
527 529 1.472878 CTCAACGAGACTCGGGATTCA 59.527 52.381 27.39 0.00 45.59 2.57
532 534 1.067142 CGAGACTCGGGATTCACCAAA 60.067 52.381 17.27 0.00 41.20 3.28
536 539 0.321298 CTCGGGATTCACCAAACCGT 60.321 55.000 0.00 0.00 44.54 4.83
537 540 0.320946 TCGGGATTCACCAAACCGTC 60.321 55.000 0.00 0.00 44.54 4.79
560 563 0.331954 TCCTAGACGGAGGCAAGAGT 59.668 55.000 0.00 0.00 36.69 3.24
571 574 0.598562 GGCAAGAGTCTCGTCTGACA 59.401 55.000 8.73 0.00 39.27 3.58
573 576 1.975837 CAAGAGTCTCGTCTGACAGC 58.024 55.000 8.73 0.00 39.27 4.40
577 580 1.666700 GAGTCTCGTCTGACAGCGTAT 59.333 52.381 15.55 4.55 39.27 3.06
603 606 3.618997 GCCCGAGGAAACTTATTCAGACA 60.619 47.826 0.00 0.00 44.43 3.41
636 639 0.463116 ACGGCCTTGACAACGTCTTT 60.463 50.000 0.00 0.00 33.92 2.52
648 651 6.527423 TGACAACGTCTTTCTTAACCCTAAT 58.473 36.000 0.00 0.00 33.15 1.73
655 658 7.836183 ACGTCTTTCTTAACCCTAATCCTACTA 59.164 37.037 0.00 0.00 0.00 1.82
656 659 8.858094 CGTCTTTCTTAACCCTAATCCTACTAT 58.142 37.037 0.00 0.00 0.00 2.12
661 664 9.496710 TTCTTAACCCTAATCCTACTATGAACA 57.503 33.333 0.00 0.00 0.00 3.18
667 670 6.126883 CCCTAATCCTACTATGAACACAACCA 60.127 42.308 0.00 0.00 0.00 3.67
744 748 2.047274 GAACCAGCGGCACTGCTA 60.047 61.111 3.13 0.00 45.23 3.49
748 752 2.743538 CAGCGGCACTGCTAGCAA 60.744 61.111 19.86 2.68 45.23 3.91
764 769 1.830477 AGCAAAACACAAAAGGAGCCA 59.170 42.857 0.00 0.00 0.00 4.75
771 776 1.597027 CAAAAGGAGCCACGGTCGT 60.597 57.895 0.00 0.00 0.00 4.34
784 789 1.071567 CGGTCGTCTCTTTTCGCCTC 61.072 60.000 0.00 0.00 0.00 4.70
789 794 1.270068 GTCTCTTTTCGCCTCGCTAC 58.730 55.000 0.00 0.00 0.00 3.58
790 795 0.885879 TCTCTTTTCGCCTCGCTACA 59.114 50.000 0.00 0.00 0.00 2.74
794 799 1.327764 CTTTTCGCCTCGCTACAATCC 59.672 52.381 0.00 0.00 0.00 3.01
796 801 1.940883 TTCGCCTCGCTACAATCCGT 61.941 55.000 0.00 0.00 0.00 4.69
803 808 2.993899 CTCGCTACAATCCGTTCTTTGT 59.006 45.455 0.00 0.00 39.32 2.83
812 817 1.566018 CCGTTCTTTGTGGAGGTCGC 61.566 60.000 0.00 0.00 0.00 5.19
816 821 1.006102 CTTTGTGGAGGTCGCTCGT 60.006 57.895 0.00 0.00 0.00 4.18
817 822 1.006571 TTTGTGGAGGTCGCTCGTC 60.007 57.895 0.00 0.00 0.00 4.20
818 823 1.461091 TTTGTGGAGGTCGCTCGTCT 61.461 55.000 0.00 0.00 0.00 4.18
819 824 1.863662 TTGTGGAGGTCGCTCGTCTC 61.864 60.000 6.77 6.77 0.00 3.36
820 825 2.041686 GTGGAGGTCGCTCGTCTCT 61.042 63.158 12.10 0.65 0.00 3.10
821 826 1.303398 TGGAGGTCGCTCGTCTCTT 60.303 57.895 12.10 0.00 0.00 2.85
822 827 1.306642 TGGAGGTCGCTCGTCTCTTC 61.307 60.000 12.10 2.48 0.00 2.87
823 828 1.027792 GGAGGTCGCTCGTCTCTTCT 61.028 60.000 12.10 0.00 0.00 2.85
824 829 0.098025 GAGGTCGCTCGTCTCTTCTG 59.902 60.000 7.63 0.00 0.00 3.02
825 830 1.515304 GGTCGCTCGTCTCTTCTGC 60.515 63.158 0.00 0.00 0.00 4.26
826 831 1.210413 GTCGCTCGTCTCTTCTGCA 59.790 57.895 0.00 0.00 0.00 4.41
827 832 1.068287 GTCGCTCGTCTCTTCTGCAC 61.068 60.000 0.00 0.00 0.00 4.57
828 833 2.148982 CGCTCGTCTCTTCTGCACG 61.149 63.158 0.00 0.00 34.78 5.34
829 834 1.210413 GCTCGTCTCTTCTGCACGA 59.790 57.895 0.00 0.00 40.14 4.35
830 835 0.387367 GCTCGTCTCTTCTGCACGAA 60.387 55.000 0.00 0.00 41.74 3.85
831 836 1.930817 GCTCGTCTCTTCTGCACGAAA 60.931 52.381 0.00 0.00 41.74 3.46
832 837 2.600731 CTCGTCTCTTCTGCACGAAAT 58.399 47.619 0.00 0.00 41.74 2.17
883 888 6.572519 TGGAAGAATTAATTAAGTGCATGCC 58.427 36.000 16.68 6.65 0.00 4.40
884 889 6.154192 TGGAAGAATTAATTAAGTGCATGCCA 59.846 34.615 16.68 0.00 0.00 4.92
885 890 7.041107 GGAAGAATTAATTAAGTGCATGCCAA 58.959 34.615 16.68 4.40 0.00 4.52
886 891 7.548780 GGAAGAATTAATTAAGTGCATGCCAAA 59.451 33.333 16.68 4.40 0.00 3.28
887 892 9.101655 GAAGAATTAATTAAGTGCATGCCAAAT 57.898 29.630 16.68 6.66 0.00 2.32
888 893 8.428186 AGAATTAATTAAGTGCATGCCAAATG 57.572 30.769 16.68 0.00 0.00 2.32
891 896 5.664294 AATTAAGTGCATGCCAAATGAGA 57.336 34.783 16.68 0.00 0.00 3.27
894 899 3.014304 AGTGCATGCCAAATGAGAGAT 57.986 42.857 16.68 0.00 0.00 2.75
896 901 3.380637 AGTGCATGCCAAATGAGAGATTC 59.619 43.478 16.68 0.00 0.00 2.52
897 902 3.380637 GTGCATGCCAAATGAGAGATTCT 59.619 43.478 16.68 0.00 0.00 2.40
898 903 4.021229 TGCATGCCAAATGAGAGATTCTT 58.979 39.130 16.68 0.00 0.00 2.52
899 904 4.142249 TGCATGCCAAATGAGAGATTCTTG 60.142 41.667 16.68 0.00 0.00 3.02
904 926 5.221481 TGCCAAATGAGAGATTCTTGCAAAA 60.221 36.000 0.00 0.00 0.00 2.44
992 1017 2.221906 CTTGGCAGCCCAGCACATTC 62.222 60.000 9.64 0.00 43.37 2.67
1130 1155 4.067512 TCCTCTCCAGCCTCGCCT 62.068 66.667 0.00 0.00 0.00 5.52
1192 1217 4.465446 CGCCTCCTCCTCCTCCCA 62.465 72.222 0.00 0.00 0.00 4.37
1439 1473 2.125673 CCGCCTCCACCTACAACG 60.126 66.667 0.00 0.00 0.00 4.10
1588 1623 2.273908 CAGGGAGCTGCATTGCTTT 58.726 52.632 7.79 0.00 44.17 3.51
1693 1728 2.027460 CTTGCGCGCAGGGTTTTT 59.973 55.556 32.93 0.00 44.71 1.94
1729 1764 0.526662 GGAATGTCGTCTCGTGGACT 59.473 55.000 8.91 0.00 42.44 3.85
1747 1782 2.305607 TGCCATGGTGGGAGGGTAC 61.306 63.158 14.67 0.00 38.19 3.34
1750 1785 3.087906 ATGGTGGGAGGGTACGCC 61.088 66.667 6.27 0.00 37.76 5.68
1776 1811 1.226773 GCATGTTTGAGGATGCGGC 60.227 57.895 0.00 0.00 35.95 6.53
1905 1940 3.267597 AAGTGCATGGTTTCGCCGC 62.268 57.895 0.00 0.00 41.21 6.53
2032 2067 1.065926 TGGCGCAAAGATGTCATCTCT 60.066 47.619 15.75 0.00 39.08 3.10
2076 2111 2.427872 TGGCCTTCATGGTATGGGTAT 58.572 47.619 3.32 0.00 38.35 2.73
2080 2115 3.560025 GCCTTCATGGTATGGGTATGGAG 60.560 52.174 0.00 0.00 38.35 3.86
2568 2603 3.598019 CAGTTGGGTAAATGCAGCAAT 57.402 42.857 0.00 0.00 0.00 3.56
2685 2721 3.719268 TCATTGGCATTGTACAGGACT 57.281 42.857 9.03 0.00 0.00 3.85
2693 2729 4.941263 GGCATTGTACAGGACTACATCAAA 59.059 41.667 0.00 0.00 0.00 2.69
2694 2730 5.065218 GGCATTGTACAGGACTACATCAAAG 59.935 44.000 0.00 0.00 0.00 2.77
2727 2763 4.022068 CCATTGGCAGTTAAAAGAGCAGAA 60.022 41.667 0.00 0.00 0.00 3.02
2764 2800 5.449304 TCTATGCTCATACATGTACGTTCG 58.551 41.667 7.96 0.00 0.00 3.95
2770 2806 1.311651 TACATGTACGTTCGGGCGGA 61.312 55.000 0.08 0.00 35.98 5.54
2771 2807 1.227147 CATGTACGTTCGGGCGGAT 60.227 57.895 0.00 0.00 35.98 4.18
2998 3037 9.449719 GTGATTGAGTTCCTTTTTCTAGGATAA 57.550 33.333 0.00 0.00 43.66 1.75
2999 3038 9.672673 TGATTGAGTTCCTTTTTCTAGGATAAG 57.327 33.333 0.00 0.00 43.66 1.73
3000 3039 9.114952 GATTGAGTTCCTTTTTCTAGGATAAGG 57.885 37.037 12.86 12.86 43.66 2.69
3019 3058 4.734398 AGGAAGTGAGTTGCTAGATGAG 57.266 45.455 0.00 0.00 34.48 2.90
3020 3059 3.450457 AGGAAGTGAGTTGCTAGATGAGG 59.550 47.826 0.00 0.00 34.48 3.86
3021 3060 3.196685 GGAAGTGAGTTGCTAGATGAGGT 59.803 47.826 0.00 0.00 0.00 3.85
3188 3229 6.347696 AGAGAGACCATTAAAGAATGCTCAG 58.652 40.000 0.00 0.00 41.09 3.35
3194 3235 5.954150 ACCATTAAAGAATGCTCAGATGGTT 59.046 36.000 8.37 0.00 42.31 3.67
3198 3239 4.778534 AAGAATGCTCAGATGGTTTGTG 57.221 40.909 0.00 0.00 0.00 3.33
3255 3296 0.555280 TTTATATGCAGCTGGGGCCA 59.445 50.000 17.12 4.89 39.73 5.36
3258 3299 0.325484 ATATGCAGCTGGGGCCAAAA 60.325 50.000 17.12 0.00 39.73 2.44
3265 3307 1.494296 AGCTGGGGCCAAAACAAAATT 59.506 42.857 4.39 0.00 39.73 1.82
3345 3387 8.857216 CAGTTTCTCTTGCACATTTATTCATTC 58.143 33.333 0.00 0.00 0.00 2.67
3392 3434 8.535335 ACACAAGACATTACTCTCTATGAACAT 58.465 33.333 0.00 0.00 0.00 2.71
3414 3456 1.081277 GTTGGTCCCTCCTCCCTCT 59.919 63.158 0.00 0.00 37.07 3.69
3417 3459 2.371259 GGTCCCTCCTCCCTCTTGC 61.371 68.421 0.00 0.00 0.00 4.01
3475 3517 5.649782 AAAACATCATAGCTGGAGTTTGG 57.350 39.130 0.00 0.00 33.27 3.28
3484 3526 3.365472 AGCTGGAGTTTGGTTTTTGAGT 58.635 40.909 0.00 0.00 0.00 3.41
3586 3639 3.199946 TCGCCATACCTTTTCAGAATCCT 59.800 43.478 0.00 0.00 0.00 3.24
3755 3819 7.714377 AGATGACTCATATGGTTGCTTAGAAAG 59.286 37.037 2.13 0.00 0.00 2.62
3761 3825 6.772716 TCATATGGTTGCTTAGAAAGGGAATC 59.227 38.462 2.13 0.00 0.00 2.52
3831 3898 3.562505 CAGTCTGCAAAGTCAGAAATGC 58.437 45.455 0.00 0.00 43.89 3.56
3834 3901 2.294233 TCTGCAAAGTCAGAAATGCCAC 59.706 45.455 0.00 0.00 39.89 5.01
3862 3929 6.515272 TGAATTCCAAGACTAATTTCCTGC 57.485 37.500 2.27 0.00 0.00 4.85
3881 3948 1.683943 CGGCACTGATCCAAATCCAT 58.316 50.000 0.00 0.00 0.00 3.41
4004 4149 6.967199 CGCAAACTTAACCCAAGAGATAATTC 59.033 38.462 0.00 0.00 37.71 2.17
4041 4186 3.911661 CAGCTCTACTTTTGCTGCTTT 57.088 42.857 0.00 0.00 45.76 3.51
4042 4187 3.562505 CAGCTCTACTTTTGCTGCTTTG 58.437 45.455 0.00 0.00 45.76 2.77
4043 4188 2.030451 AGCTCTACTTTTGCTGCTTTGC 60.030 45.455 0.00 0.00 35.54 3.68
4044 4189 2.030451 GCTCTACTTTTGCTGCTTTGCT 60.030 45.455 0.00 0.00 0.00 3.91
4045 4190 3.189287 GCTCTACTTTTGCTGCTTTGCTA 59.811 43.478 0.00 0.00 0.00 3.49
4046 4191 4.142513 GCTCTACTTTTGCTGCTTTGCTAT 60.143 41.667 0.00 0.00 0.00 2.97
4047 4192 5.065218 GCTCTACTTTTGCTGCTTTGCTATA 59.935 40.000 0.00 0.00 0.00 1.31
4048 4193 6.422776 TCTACTTTTGCTGCTTTGCTATAC 57.577 37.500 0.00 0.00 0.00 1.47
4049 4194 4.440839 ACTTTTGCTGCTTTGCTATACC 57.559 40.909 0.00 0.00 0.00 2.73
4050 4195 4.082125 ACTTTTGCTGCTTTGCTATACCT 58.918 39.130 0.00 0.00 0.00 3.08
4051 4196 4.082571 ACTTTTGCTGCTTTGCTATACCTG 60.083 41.667 0.00 0.00 0.00 4.00
4052 4197 2.787473 TGCTGCTTTGCTATACCTGT 57.213 45.000 0.00 0.00 0.00 4.00
4053 4198 2.358957 TGCTGCTTTGCTATACCTGTG 58.641 47.619 0.00 0.00 0.00 3.66
4054 4199 2.027285 TGCTGCTTTGCTATACCTGTGA 60.027 45.455 0.00 0.00 0.00 3.58
4055 4200 2.352960 GCTGCTTTGCTATACCTGTGAC 59.647 50.000 0.00 0.00 0.00 3.67
4056 4201 2.939103 CTGCTTTGCTATACCTGTGACC 59.061 50.000 0.00 0.00 0.00 4.02
4057 4202 1.933853 GCTTTGCTATACCTGTGACCG 59.066 52.381 0.00 0.00 0.00 4.79
4058 4203 2.677037 GCTTTGCTATACCTGTGACCGT 60.677 50.000 0.00 0.00 0.00 4.83
4059 4204 2.665649 TTGCTATACCTGTGACCGTG 57.334 50.000 0.00 0.00 0.00 4.94
4060 4205 1.842052 TGCTATACCTGTGACCGTGA 58.158 50.000 0.00 0.00 0.00 4.35
4061 4206 1.749063 TGCTATACCTGTGACCGTGAG 59.251 52.381 0.00 0.00 0.00 3.51
4062 4207 2.022195 GCTATACCTGTGACCGTGAGA 58.978 52.381 0.00 0.00 0.00 3.27
4063 4208 2.426024 GCTATACCTGTGACCGTGAGAA 59.574 50.000 0.00 0.00 0.00 2.87
4064 4209 3.734293 GCTATACCTGTGACCGTGAGAAC 60.734 52.174 0.00 0.00 0.00 3.01
4065 4210 0.963962 TACCTGTGACCGTGAGAACC 59.036 55.000 0.00 0.00 0.00 3.62
4066 4211 1.046472 ACCTGTGACCGTGAGAACCA 61.046 55.000 0.00 0.00 0.00 3.67
4067 4212 0.321671 CCTGTGACCGTGAGAACCAT 59.678 55.000 0.00 0.00 0.00 3.55
4068 4213 1.270839 CCTGTGACCGTGAGAACCATT 60.271 52.381 0.00 0.00 0.00 3.16
4069 4214 2.069273 CTGTGACCGTGAGAACCATTC 58.931 52.381 0.00 0.00 0.00 2.67
4070 4215 1.270625 TGTGACCGTGAGAACCATTCC 60.271 52.381 0.00 0.00 0.00 3.01
4071 4216 1.052617 TGACCGTGAGAACCATTCCA 58.947 50.000 0.00 0.00 0.00 3.53
4072 4217 1.628340 TGACCGTGAGAACCATTCCAT 59.372 47.619 0.00 0.00 0.00 3.41
4073 4218 2.009774 GACCGTGAGAACCATTCCATG 58.990 52.381 0.00 0.00 0.00 3.66
4074 4219 1.351017 ACCGTGAGAACCATTCCATGT 59.649 47.619 0.00 0.00 0.00 3.21
4075 4220 2.224769 ACCGTGAGAACCATTCCATGTT 60.225 45.455 0.00 0.00 0.00 2.71
4076 4221 2.420022 CCGTGAGAACCATTCCATGTTC 59.580 50.000 0.00 0.00 0.00 3.18
4077 4222 2.420022 CGTGAGAACCATTCCATGTTCC 59.580 50.000 0.00 0.00 0.00 3.62
4078 4223 3.690460 GTGAGAACCATTCCATGTTCCT 58.310 45.455 0.00 0.00 0.00 3.36
4079 4224 3.441572 GTGAGAACCATTCCATGTTCCTG 59.558 47.826 0.00 0.00 0.00 3.86
4080 4225 3.074390 TGAGAACCATTCCATGTTCCTGT 59.926 43.478 0.00 0.00 0.00 4.00
4081 4226 3.690460 AGAACCATTCCATGTTCCTGTC 58.310 45.455 0.00 0.00 0.00 3.51
4082 4227 3.074390 AGAACCATTCCATGTTCCTGTCA 59.926 43.478 0.00 0.00 0.00 3.58
4083 4228 3.524095 ACCATTCCATGTTCCTGTCAA 57.476 42.857 0.00 0.00 0.00 3.18
4084 4229 3.424703 ACCATTCCATGTTCCTGTCAAG 58.575 45.455 0.00 0.00 0.00 3.02
4085 4230 3.074390 ACCATTCCATGTTCCTGTCAAGA 59.926 43.478 0.00 0.00 0.00 3.02
4086 4231 4.264083 ACCATTCCATGTTCCTGTCAAGAT 60.264 41.667 0.00 0.00 0.00 2.40
4087 4232 4.337555 CCATTCCATGTTCCTGTCAAGATC 59.662 45.833 0.00 0.00 0.00 2.75
4088 4233 3.634397 TCCATGTTCCTGTCAAGATCC 57.366 47.619 0.00 0.00 0.00 3.36
4089 4234 3.184628 TCCATGTTCCTGTCAAGATCCT 58.815 45.455 0.00 0.00 0.00 3.24
4090 4235 3.588842 TCCATGTTCCTGTCAAGATCCTT 59.411 43.478 0.00 0.00 0.00 3.36
4091 4236 4.043310 TCCATGTTCCTGTCAAGATCCTTT 59.957 41.667 0.00 0.00 0.00 3.11
4092 4237 4.768968 CCATGTTCCTGTCAAGATCCTTTT 59.231 41.667 0.00 0.00 0.00 2.27
4093 4238 5.244626 CCATGTTCCTGTCAAGATCCTTTTT 59.755 40.000 0.00 0.00 0.00 1.94
4094 4239 6.385033 CATGTTCCTGTCAAGATCCTTTTTC 58.615 40.000 0.00 0.00 0.00 2.29
4095 4240 4.515191 TGTTCCTGTCAAGATCCTTTTTCG 59.485 41.667 0.00 0.00 0.00 3.46
4096 4241 4.617253 TCCTGTCAAGATCCTTTTTCGA 57.383 40.909 0.00 0.00 0.00 3.71
4097 4242 4.569943 TCCTGTCAAGATCCTTTTTCGAG 58.430 43.478 0.00 0.00 0.00 4.04
4098 4243 4.040461 TCCTGTCAAGATCCTTTTTCGAGT 59.960 41.667 0.00 0.00 0.00 4.18
4099 4244 4.390297 CCTGTCAAGATCCTTTTTCGAGTC 59.610 45.833 0.00 0.00 0.00 3.36
4100 4245 4.956085 TGTCAAGATCCTTTTTCGAGTCA 58.044 39.130 0.00 0.00 0.00 3.41
4101 4246 5.551233 TGTCAAGATCCTTTTTCGAGTCAT 58.449 37.500 0.00 0.00 0.00 3.06
4102 4247 5.639506 TGTCAAGATCCTTTTTCGAGTCATC 59.360 40.000 0.00 0.00 0.00 2.92
4139 4284 9.998106 ATGTACTGGATTAGGATGTTATGTAAC 57.002 33.333 0.00 0.00 36.74 2.50
4140 4285 9.209048 TGTACTGGATTAGGATGTTATGTAACT 57.791 33.333 4.71 0.00 37.12 2.24
4141 4286 9.477484 GTACTGGATTAGGATGTTATGTAACTG 57.523 37.037 4.71 0.00 37.12 3.16
4142 4287 8.319057 ACTGGATTAGGATGTTATGTAACTGA 57.681 34.615 4.71 0.00 37.12 3.41
4143 4288 8.768397 ACTGGATTAGGATGTTATGTAACTGAA 58.232 33.333 4.71 0.00 37.12 3.02
4144 4289 9.784531 CTGGATTAGGATGTTATGTAACTGAAT 57.215 33.333 4.71 0.00 37.12 2.57
4145 4290 9.778741 TGGATTAGGATGTTATGTAACTGAATC 57.221 33.333 4.71 6.12 37.12 2.52
4146 4291 9.778741 GGATTAGGATGTTATGTAACTGAATCA 57.221 33.333 4.71 0.00 37.12 2.57
4148 4293 9.784531 ATTAGGATGTTATGTAACTGAATCAGG 57.215 33.333 15.38 0.00 37.12 3.86
4149 4294 7.200434 AGGATGTTATGTAACTGAATCAGGT 57.800 36.000 15.38 10.99 37.12 4.00
4150 4295 7.050377 AGGATGTTATGTAACTGAATCAGGTG 58.950 38.462 11.67 0.00 37.12 4.00
4151 4296 6.238484 GGATGTTATGTAACTGAATCAGGTGC 60.238 42.308 11.67 10.52 34.44 5.01
4152 4297 5.804639 TGTTATGTAACTGAATCAGGTGCT 58.195 37.500 16.84 5.90 34.92 4.40
4153 4298 5.874810 TGTTATGTAACTGAATCAGGTGCTC 59.125 40.000 16.84 5.65 34.92 4.26
4154 4299 3.334583 TGTAACTGAATCAGGTGCTCC 57.665 47.619 16.84 0.00 34.92 4.70
4155 4300 2.027192 TGTAACTGAATCAGGTGCTCCC 60.027 50.000 16.84 0.00 34.92 4.30
4156 4301 1.067295 AACTGAATCAGGTGCTCCCA 58.933 50.000 15.38 0.00 35.51 4.37
4157 4302 1.293062 ACTGAATCAGGTGCTCCCAT 58.707 50.000 15.38 0.00 35.51 4.00
4158 4303 1.064906 ACTGAATCAGGTGCTCCCATG 60.065 52.381 15.38 0.00 35.51 3.66
4159 4304 0.256752 TGAATCAGGTGCTCCCATGG 59.743 55.000 4.14 4.14 34.66 3.66
4160 4305 0.257039 GAATCAGGTGCTCCCATGGT 59.743 55.000 11.73 0.00 34.66 3.55
4161 4306 1.490490 GAATCAGGTGCTCCCATGGTA 59.510 52.381 11.73 0.00 34.66 3.25
4162 4307 1.825105 ATCAGGTGCTCCCATGGTAT 58.175 50.000 11.73 0.00 34.66 2.73
4163 4308 1.595311 TCAGGTGCTCCCATGGTATT 58.405 50.000 11.73 0.00 34.66 1.89
4164 4309 1.490490 TCAGGTGCTCCCATGGTATTC 59.510 52.381 11.73 0.00 34.66 1.75
4165 4310 1.492176 CAGGTGCTCCCATGGTATTCT 59.508 52.381 11.73 0.00 34.66 2.40
4166 4311 2.092212 CAGGTGCTCCCATGGTATTCTT 60.092 50.000 11.73 0.00 34.66 2.52
4167 4312 2.092212 AGGTGCTCCCATGGTATTCTTG 60.092 50.000 11.73 0.00 34.66 3.02
4168 4313 1.678101 GTGCTCCCATGGTATTCTTGC 59.322 52.381 11.73 4.64 0.00 4.01
4169 4314 1.565759 TGCTCCCATGGTATTCTTGCT 59.434 47.619 11.73 0.00 0.00 3.91
4170 4315 2.025037 TGCTCCCATGGTATTCTTGCTT 60.025 45.455 11.73 0.00 0.00 3.91
4171 4316 3.201930 TGCTCCCATGGTATTCTTGCTTA 59.798 43.478 11.73 0.00 0.00 3.09
4172 4317 3.817647 GCTCCCATGGTATTCTTGCTTAG 59.182 47.826 11.73 0.00 0.00 2.18
4173 4318 3.817647 CTCCCATGGTATTCTTGCTTAGC 59.182 47.826 11.73 0.00 0.00 3.09
4174 4319 3.201930 TCCCATGGTATTCTTGCTTAGCA 59.798 43.478 11.73 1.39 36.47 3.49
4175 4320 3.953612 CCCATGGTATTCTTGCTTAGCAA 59.046 43.478 19.07 19.07 46.80 3.91
4192 4337 9.801873 TGCTTAGCAAATTTGATTTAACTATCC 57.198 29.630 22.31 6.93 34.76 2.59
4197 4342 9.657419 AGCAAATTTGATTTAACTATCCTTTGG 57.343 29.630 22.31 0.00 0.00 3.28
4198 4343 8.882736 GCAAATTTGATTTAACTATCCTTTGGG 58.117 33.333 22.31 0.00 0.00 4.12
4210 4355 2.675658 CCTTTGGGAAGGTCAAGGAA 57.324 50.000 0.00 0.00 46.16 3.36
4211 4356 2.519013 CCTTTGGGAAGGTCAAGGAAG 58.481 52.381 0.00 0.00 46.16 3.46
4212 4357 1.889170 CTTTGGGAAGGTCAAGGAAGC 59.111 52.381 0.00 0.00 0.00 3.86
4213 4358 1.149101 TTGGGAAGGTCAAGGAAGCT 58.851 50.000 0.00 0.00 0.00 3.74
4214 4359 2.038863 TGGGAAGGTCAAGGAAGCTA 57.961 50.000 0.00 0.00 0.00 3.32
4215 4360 1.628846 TGGGAAGGTCAAGGAAGCTAC 59.371 52.381 0.00 0.00 0.00 3.58
4216 4361 1.909986 GGGAAGGTCAAGGAAGCTACT 59.090 52.381 0.00 0.00 0.00 2.57
4217 4362 2.093394 GGGAAGGTCAAGGAAGCTACTC 60.093 54.545 0.00 0.00 0.00 2.59
4218 4363 2.417515 GGAAGGTCAAGGAAGCTACTCG 60.418 54.545 0.00 0.00 0.00 4.18
4219 4364 1.926108 AGGTCAAGGAAGCTACTCGT 58.074 50.000 0.00 0.00 0.00 4.18
4220 4365 2.249139 AGGTCAAGGAAGCTACTCGTT 58.751 47.619 0.00 0.00 0.00 3.85
4221 4366 2.028930 AGGTCAAGGAAGCTACTCGTTG 60.029 50.000 12.55 12.55 40.77 4.10
4222 4367 2.029290 GGTCAAGGAAGCTACTCGTTGA 60.029 50.000 15.96 15.96 44.00 3.18
4223 4368 3.368531 GGTCAAGGAAGCTACTCGTTGAT 60.369 47.826 20.53 0.00 46.25 2.57
4224 4369 3.614616 GTCAAGGAAGCTACTCGTTGATG 59.385 47.826 20.53 3.84 46.25 3.07
4225 4370 2.932614 CAAGGAAGCTACTCGTTGATGG 59.067 50.000 13.22 0.00 41.54 3.51
4226 4371 2.457598 AGGAAGCTACTCGTTGATGGA 58.542 47.619 0.00 0.00 0.00 3.41
4227 4372 2.832129 AGGAAGCTACTCGTTGATGGAA 59.168 45.455 0.00 0.00 0.00 3.53
4228 4373 3.260884 AGGAAGCTACTCGTTGATGGAAA 59.739 43.478 0.00 0.00 0.00 3.13
4229 4374 3.619038 GGAAGCTACTCGTTGATGGAAAG 59.381 47.826 0.00 0.00 0.00 2.62
4230 4375 3.252974 AGCTACTCGTTGATGGAAAGG 57.747 47.619 0.00 0.00 0.00 3.11
4231 4376 2.832129 AGCTACTCGTTGATGGAAAGGA 59.168 45.455 0.00 0.00 0.00 3.36
4232 4377 2.930682 GCTACTCGTTGATGGAAAGGAC 59.069 50.000 0.00 0.00 0.00 3.85
4233 4378 3.368531 GCTACTCGTTGATGGAAAGGACT 60.369 47.826 0.00 0.00 0.00 3.85
4234 4379 3.320673 ACTCGTTGATGGAAAGGACTC 57.679 47.619 0.00 0.00 0.00 3.36
4235 4380 2.900546 ACTCGTTGATGGAAAGGACTCT 59.099 45.455 0.00 0.00 0.00 3.24
4236 4381 3.257393 CTCGTTGATGGAAAGGACTCTG 58.743 50.000 0.00 0.00 0.00 3.35
4237 4382 2.897326 TCGTTGATGGAAAGGACTCTGA 59.103 45.455 0.00 0.00 0.00 3.27
4238 4383 3.515502 TCGTTGATGGAAAGGACTCTGAT 59.484 43.478 0.00 0.00 0.00 2.90
4239 4384 4.020218 TCGTTGATGGAAAGGACTCTGATT 60.020 41.667 0.00 0.00 0.00 2.57
4240 4385 5.186992 TCGTTGATGGAAAGGACTCTGATTA 59.813 40.000 0.00 0.00 0.00 1.75
4241 4386 5.874810 CGTTGATGGAAAGGACTCTGATTAA 59.125 40.000 0.00 0.00 0.00 1.40
4242 4387 6.183360 CGTTGATGGAAAGGACTCTGATTAAC 60.183 42.308 0.00 0.00 0.00 2.01
4243 4388 5.745227 TGATGGAAAGGACTCTGATTAACC 58.255 41.667 0.00 0.00 0.00 2.85
4244 4389 5.250543 TGATGGAAAGGACTCTGATTAACCA 59.749 40.000 0.00 0.00 0.00 3.67
4245 4390 5.165961 TGGAAAGGACTCTGATTAACCAG 57.834 43.478 0.00 0.00 35.55 4.00
4246 4391 4.019321 TGGAAAGGACTCTGATTAACCAGG 60.019 45.833 0.00 0.00 34.99 4.45
4247 4392 4.019231 GGAAAGGACTCTGATTAACCAGGT 60.019 45.833 0.00 0.00 34.99 4.00
4248 4393 4.559862 AAGGACTCTGATTAACCAGGTG 57.440 45.455 0.00 0.00 34.99 4.00
4249 4394 3.791320 AGGACTCTGATTAACCAGGTGA 58.209 45.455 0.00 0.00 34.99 4.02
4250 4395 3.772025 AGGACTCTGATTAACCAGGTGAG 59.228 47.826 0.00 0.00 34.99 3.51
4251 4396 3.769844 GGACTCTGATTAACCAGGTGAGA 59.230 47.826 8.94 0.00 34.99 3.27
4252 4397 4.142049 GGACTCTGATTAACCAGGTGAGAG 60.142 50.000 8.94 9.36 34.99 3.20
4253 4398 4.421131 ACTCTGATTAACCAGGTGAGAGT 58.579 43.478 8.94 9.88 35.09 3.24
4254 4399 4.464597 ACTCTGATTAACCAGGTGAGAGTC 59.535 45.833 8.94 0.00 34.94 3.36
4255 4400 3.769844 TCTGATTAACCAGGTGAGAGTCC 59.230 47.826 0.00 0.00 34.99 3.85
4256 4401 2.838202 TGATTAACCAGGTGAGAGTCCC 59.162 50.000 0.00 0.00 0.00 4.46
4257 4402 1.652947 TTAACCAGGTGAGAGTCCCC 58.347 55.000 0.00 0.00 0.00 4.81
4258 4403 0.613853 TAACCAGGTGAGAGTCCCCG 60.614 60.000 0.00 0.00 0.00 5.73
4259 4404 3.775654 CCAGGTGAGAGTCCCCGC 61.776 72.222 0.00 0.00 0.00 6.13
4260 4405 2.997315 CAGGTGAGAGTCCCCGCA 60.997 66.667 0.00 0.00 0.00 5.69
4261 4406 2.039624 AGGTGAGAGTCCCCGCAT 59.960 61.111 0.00 0.00 0.00 4.73
4262 4407 2.060980 AGGTGAGAGTCCCCGCATC 61.061 63.158 0.00 0.00 0.00 3.91
4263 4408 2.060980 GGTGAGAGTCCCCGCATCT 61.061 63.158 0.00 0.00 0.00 2.90
4264 4409 1.439644 GTGAGAGTCCCCGCATCTC 59.560 63.158 0.00 0.00 39.93 2.75
4265 4410 1.040339 GTGAGAGTCCCCGCATCTCT 61.040 60.000 3.39 0.00 40.14 3.10
4266 4411 1.039785 TGAGAGTCCCCGCATCTCTG 61.040 60.000 0.00 0.00 40.14 3.35
4267 4412 1.000993 AGAGTCCCCGCATCTCTGT 59.999 57.895 0.00 0.00 37.20 3.41
4268 4413 0.616111 AGAGTCCCCGCATCTCTGTT 60.616 55.000 0.00 0.00 37.20 3.16
4269 4414 0.250513 GAGTCCCCGCATCTCTGTTT 59.749 55.000 0.00 0.00 0.00 2.83
4270 4415 0.693049 AGTCCCCGCATCTCTGTTTT 59.307 50.000 0.00 0.00 0.00 2.43
4271 4416 1.087501 GTCCCCGCATCTCTGTTTTC 58.912 55.000 0.00 0.00 0.00 2.29
4272 4417 0.035439 TCCCCGCATCTCTGTTTTCC 60.035 55.000 0.00 0.00 0.00 3.13
4273 4418 0.322456 CCCCGCATCTCTGTTTTCCA 60.322 55.000 0.00 0.00 0.00 3.53
4274 4419 1.683011 CCCCGCATCTCTGTTTTCCAT 60.683 52.381 0.00 0.00 0.00 3.41
4275 4420 2.094675 CCCGCATCTCTGTTTTCCATT 58.905 47.619 0.00 0.00 0.00 3.16
4276 4421 2.098117 CCCGCATCTCTGTTTTCCATTC 59.902 50.000 0.00 0.00 0.00 2.67
4277 4422 3.012518 CCGCATCTCTGTTTTCCATTCT 58.987 45.455 0.00 0.00 0.00 2.40
4278 4423 3.441572 CCGCATCTCTGTTTTCCATTCTT 59.558 43.478 0.00 0.00 0.00 2.52
4279 4424 4.409570 CGCATCTCTGTTTTCCATTCTTG 58.590 43.478 0.00 0.00 0.00 3.02
4280 4425 4.083110 CGCATCTCTGTTTTCCATTCTTGT 60.083 41.667 0.00 0.00 0.00 3.16
4281 4426 5.122239 CGCATCTCTGTTTTCCATTCTTGTA 59.878 40.000 0.00 0.00 0.00 2.41
4282 4427 6.317857 GCATCTCTGTTTTCCATTCTTGTAC 58.682 40.000 0.00 0.00 0.00 2.90
4283 4428 6.072508 GCATCTCTGTTTTCCATTCTTGTACA 60.073 38.462 0.00 0.00 0.00 2.90
4284 4429 7.522073 GCATCTCTGTTTTCCATTCTTGTACAA 60.522 37.037 8.28 8.28 0.00 2.41
4285 4430 8.517878 CATCTCTGTTTTCCATTCTTGTACAAT 58.482 33.333 9.13 0.00 0.00 2.71
4286 4431 8.463930 TCTCTGTTTTCCATTCTTGTACAATT 57.536 30.769 9.13 0.00 0.00 2.32
4287 4432 9.567776 TCTCTGTTTTCCATTCTTGTACAATTA 57.432 29.630 9.13 0.34 0.00 1.40
4293 4438 9.921637 TTTTCCATTCTTGTACAATTATGAACC 57.078 29.630 22.20 0.00 0.00 3.62
4294 4439 8.877864 TTCCATTCTTGTACAATTATGAACCT 57.122 30.769 22.20 4.48 0.00 3.50
4295 4440 8.877864 TCCATTCTTGTACAATTATGAACCTT 57.122 30.769 22.20 3.94 0.00 3.50
4296 4441 8.956426 TCCATTCTTGTACAATTATGAACCTTC 58.044 33.333 22.20 0.00 0.00 3.46
4297 4442 7.910162 CCATTCTTGTACAATTATGAACCTTCG 59.090 37.037 22.20 4.61 0.00 3.79
4298 4443 6.978343 TCTTGTACAATTATGAACCTTCGG 57.022 37.500 9.13 0.00 0.00 4.30
4299 4444 6.469410 TCTTGTACAATTATGAACCTTCGGT 58.531 36.000 9.13 0.00 37.65 4.69
4300 4445 7.613585 TCTTGTACAATTATGAACCTTCGGTA 58.386 34.615 9.13 0.00 33.12 4.02
4301 4446 7.762615 TCTTGTACAATTATGAACCTTCGGTAG 59.237 37.037 9.13 0.00 33.12 3.18
4302 4447 5.813672 TGTACAATTATGAACCTTCGGTAGC 59.186 40.000 0.00 0.00 33.12 3.58
4303 4448 5.099042 ACAATTATGAACCTTCGGTAGCT 57.901 39.130 0.00 0.00 33.12 3.32
4304 4449 5.116882 ACAATTATGAACCTTCGGTAGCTC 58.883 41.667 0.00 0.00 33.12 4.09
4305 4450 3.814005 TTATGAACCTTCGGTAGCTCC 57.186 47.619 0.00 0.00 33.12 4.70
4316 4461 2.402640 GGTAGCTCCGTACGAGATTG 57.597 55.000 18.76 0.00 41.63 2.67
4317 4462 1.599916 GGTAGCTCCGTACGAGATTGC 60.600 57.143 18.76 12.36 41.63 3.56
4318 4463 1.334243 GTAGCTCCGTACGAGATTGCT 59.666 52.381 18.76 18.10 41.63 3.91
4319 4464 0.818296 AGCTCCGTACGAGATTGCTT 59.182 50.000 18.76 1.69 41.63 3.91
4320 4465 2.022195 AGCTCCGTACGAGATTGCTTA 58.978 47.619 18.76 0.00 41.63 3.09
4321 4466 2.033550 AGCTCCGTACGAGATTGCTTAG 59.966 50.000 18.76 0.00 41.63 2.18
4322 4467 2.033049 GCTCCGTACGAGATTGCTTAGA 59.967 50.000 18.76 0.00 41.63 2.10
4323 4468 3.619729 CTCCGTACGAGATTGCTTAGAC 58.380 50.000 18.76 0.00 41.63 2.59
4324 4469 3.011818 TCCGTACGAGATTGCTTAGACA 58.988 45.455 18.76 0.00 0.00 3.41
4325 4470 3.441222 TCCGTACGAGATTGCTTAGACAA 59.559 43.478 18.76 0.00 0.00 3.18
4326 4471 4.097437 TCCGTACGAGATTGCTTAGACAAT 59.903 41.667 18.76 2.51 42.88 2.71
4327 4472 5.297527 TCCGTACGAGATTGCTTAGACAATA 59.702 40.000 18.76 0.00 40.31 1.90
4328 4473 6.016527 TCCGTACGAGATTGCTTAGACAATAT 60.017 38.462 18.76 0.54 40.31 1.28
4329 4474 7.173735 TCCGTACGAGATTGCTTAGACAATATA 59.826 37.037 18.76 0.00 40.31 0.86
4330 4475 7.968956 CCGTACGAGATTGCTTAGACAATATAT 59.031 37.037 18.76 0.00 40.31 0.86
4331 4476 9.343103 CGTACGAGATTGCTTAGACAATATATT 57.657 33.333 10.44 0.00 40.31 1.28
4335 4480 9.322776 CGAGATTGCTTAGACAATATATTTTGC 57.677 33.333 5.88 0.42 40.31 3.68
4336 4481 9.322776 GAGATTGCTTAGACAATATATTTTGCG 57.677 33.333 5.88 0.00 40.31 4.85
4337 4482 9.056005 AGATTGCTTAGACAATATATTTTGCGA 57.944 29.630 5.88 0.00 40.31 5.10
4338 4483 9.831737 GATTGCTTAGACAATATATTTTGCGAT 57.168 29.630 5.88 0.00 40.31 4.58
4339 4484 9.831737 ATTGCTTAGACAATATATTTTGCGATC 57.168 29.630 5.88 0.00 38.48 3.69
4340 4485 8.607441 TGCTTAGACAATATATTTTGCGATCT 57.393 30.769 5.88 4.79 0.00 2.75
4341 4486 9.056005 TGCTTAGACAATATATTTTGCGATCTT 57.944 29.630 5.88 0.00 0.00 2.40
4342 4487 9.322776 GCTTAGACAATATATTTTGCGATCTTG 57.677 33.333 5.88 1.75 0.00 3.02
4343 4488 9.322776 CTTAGACAATATATTTTGCGATCTTGC 57.677 33.333 5.88 0.00 0.00 4.01
4344 4489 7.502120 AGACAATATATTTTGCGATCTTGCT 57.498 32.000 5.88 0.00 35.36 3.91
4345 4490 7.358066 AGACAATATATTTTGCGATCTTGCTG 58.642 34.615 5.88 0.00 35.36 4.41
4346 4491 5.916883 ACAATATATTTTGCGATCTTGCTGC 59.083 36.000 5.88 0.00 35.36 5.25
4347 4492 5.954296 ATATATTTTGCGATCTTGCTGCT 57.046 34.783 0.00 0.00 35.36 4.24
4348 4493 7.041167 ACAATATATTTTGCGATCTTGCTGCTA 60.041 33.333 0.00 0.00 35.36 3.49
4349 4494 5.954296 ATATTTTGCGATCTTGCTGCTAT 57.046 34.783 0.00 0.00 35.36 2.97
4350 4495 4.644103 ATTTTGCGATCTTGCTGCTATT 57.356 36.364 0.00 0.00 35.36 1.73
4351 4496 3.409851 TTTGCGATCTTGCTGCTATTG 57.590 42.857 0.00 0.00 35.36 1.90
4352 4497 0.659427 TGCGATCTTGCTGCTATTGC 59.341 50.000 0.00 8.13 40.20 3.56
4353 4498 0.942962 GCGATCTTGCTGCTATTGCT 59.057 50.000 0.00 0.00 40.48 3.91
4354 4499 1.070041 GCGATCTTGCTGCTATTGCTC 60.070 52.381 0.00 0.00 40.48 4.26
4355 4500 2.207590 CGATCTTGCTGCTATTGCTCA 58.792 47.619 0.00 0.00 40.48 4.26
4356 4501 2.610833 CGATCTTGCTGCTATTGCTCAA 59.389 45.455 0.00 4.32 40.48 3.02
4357 4502 3.250280 CGATCTTGCTGCTATTGCTCAAT 59.750 43.478 0.00 0.49 40.48 2.57
4358 4503 4.450080 CGATCTTGCTGCTATTGCTCAATA 59.550 41.667 0.00 2.73 40.48 1.90
4359 4504 5.049886 CGATCTTGCTGCTATTGCTCAATAA 60.050 40.000 0.00 0.00 40.48 1.40
4360 4505 5.490139 TCTTGCTGCTATTGCTCAATAAC 57.510 39.130 0.00 0.98 40.48 1.89
4361 4506 4.336433 TCTTGCTGCTATTGCTCAATAACC 59.664 41.667 0.00 0.29 40.48 2.85
4362 4507 3.889815 TGCTGCTATTGCTCAATAACCT 58.110 40.909 0.00 0.00 40.48 3.50
4363 4508 3.879295 TGCTGCTATTGCTCAATAACCTC 59.121 43.478 0.00 0.00 40.48 3.85
4364 4509 3.251972 GCTGCTATTGCTCAATAACCTCC 59.748 47.826 0.00 0.00 40.48 4.30
4365 4510 4.454678 CTGCTATTGCTCAATAACCTCCA 58.545 43.478 0.00 0.00 40.48 3.86
4366 4511 5.052693 TGCTATTGCTCAATAACCTCCAT 57.947 39.130 0.00 0.00 40.48 3.41
4367 4512 5.065914 TGCTATTGCTCAATAACCTCCATC 58.934 41.667 0.00 0.00 40.48 3.51
4368 4513 4.457257 GCTATTGCTCAATAACCTCCATCC 59.543 45.833 4.17 0.00 33.34 3.51
4369 4514 4.803329 ATTGCTCAATAACCTCCATCCT 57.197 40.909 0.00 0.00 0.00 3.24
4370 4515 3.565764 TGCTCAATAACCTCCATCCTG 57.434 47.619 0.00 0.00 0.00 3.86
4371 4516 3.114606 TGCTCAATAACCTCCATCCTGA 58.885 45.455 0.00 0.00 0.00 3.86
4372 4517 3.523157 TGCTCAATAACCTCCATCCTGAA 59.477 43.478 0.00 0.00 0.00 3.02
4373 4518 4.166725 TGCTCAATAACCTCCATCCTGAAT 59.833 41.667 0.00 0.00 0.00 2.57
4374 4519 4.759183 GCTCAATAACCTCCATCCTGAATC 59.241 45.833 0.00 0.00 0.00 2.52
4375 4520 5.688500 GCTCAATAACCTCCATCCTGAATCA 60.689 44.000 0.00 0.00 0.00 2.57
4376 4521 6.520021 TCAATAACCTCCATCCTGAATCAT 57.480 37.500 0.00 0.00 0.00 2.45
4377 4522 6.537355 TCAATAACCTCCATCCTGAATCATC 58.463 40.000 0.00 0.00 0.00 2.92
4378 4523 6.331042 TCAATAACCTCCATCCTGAATCATCT 59.669 38.462 0.00 0.00 0.00 2.90
4379 4524 6.776887 ATAACCTCCATCCTGAATCATCTT 57.223 37.500 0.00 0.00 0.00 2.40
4380 4525 4.434545 ACCTCCATCCTGAATCATCTTG 57.565 45.455 0.00 0.00 0.00 3.02
4381 4526 3.784763 ACCTCCATCCTGAATCATCTTGT 59.215 43.478 0.00 0.00 0.00 3.16
4382 4527 4.229123 ACCTCCATCCTGAATCATCTTGTT 59.771 41.667 0.00 0.00 0.00 2.83
4383 4528 5.198965 CCTCCATCCTGAATCATCTTGTTT 58.801 41.667 0.00 0.00 0.00 2.83
4384 4529 5.298777 CCTCCATCCTGAATCATCTTGTTTC 59.701 44.000 0.00 0.00 0.00 2.78
4385 4530 6.070951 TCCATCCTGAATCATCTTGTTTCT 57.929 37.500 0.00 0.00 29.82 2.52
4386 4531 6.487828 TCCATCCTGAATCATCTTGTTTCTT 58.512 36.000 0.00 0.00 29.82 2.52
4387 4532 6.600822 TCCATCCTGAATCATCTTGTTTCTTC 59.399 38.462 0.00 0.00 29.82 2.87
4388 4533 6.602406 CCATCCTGAATCATCTTGTTTCTTCT 59.398 38.462 0.00 0.00 29.82 2.85
4389 4534 7.122353 CCATCCTGAATCATCTTGTTTCTTCTT 59.878 37.037 0.00 0.00 29.82 2.52
4390 4535 7.444629 TCCTGAATCATCTTGTTTCTTCTTG 57.555 36.000 0.00 0.00 29.82 3.02
4391 4536 6.432162 TCCTGAATCATCTTGTTTCTTCTTGG 59.568 38.462 0.00 0.00 29.82 3.61
4392 4537 6.432162 CCTGAATCATCTTGTTTCTTCTTGGA 59.568 38.462 0.00 0.00 29.82 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.554036 GCCTCGGGCTTGGCTAGG 62.554 72.222 7.58 10.20 46.69 3.02
38 39 2.600470 GCCCGGGCCTGAGTTTTT 60.600 61.111 36.64 0.00 34.56 1.94
70 71 2.678580 AAAAACCGGGCCCGATGG 60.679 61.111 45.44 30.25 42.83 3.51
105 106 2.385091 CCGGGCTTTTACGTGTCCG 61.385 63.158 9.49 9.49 40.83 4.79
106 107 2.683859 GCCGGGCTTTTACGTGTCC 61.684 63.158 12.87 0.00 0.00 4.02
107 108 2.865308 GCCGGGCTTTTACGTGTC 59.135 61.111 12.87 0.00 0.00 3.67
108 109 3.045492 CGCCGGGCTTTTACGTGT 61.045 61.111 18.34 0.00 0.00 4.49
109 110 4.454717 GCGCCGGGCTTTTACGTG 62.455 66.667 18.34 0.00 39.11 4.49
141 142 2.558380 ATTTCCTGAAGGGGCTCGGC 62.558 60.000 0.00 0.00 35.41 5.54
142 143 0.464554 GATTTCCTGAAGGGGCTCGG 60.465 60.000 0.00 0.00 35.41 4.63
143 144 0.811616 CGATTTCCTGAAGGGGCTCG 60.812 60.000 0.00 0.00 35.41 5.03
144 145 0.253327 ACGATTTCCTGAAGGGGCTC 59.747 55.000 0.00 0.00 35.41 4.70
145 146 1.580059 TACGATTTCCTGAAGGGGCT 58.420 50.000 0.00 0.00 35.41 5.19
146 147 2.413310 TTACGATTTCCTGAAGGGGC 57.587 50.000 0.00 0.00 35.41 5.80
147 148 5.417580 TCATTTTTACGATTTCCTGAAGGGG 59.582 40.000 0.00 0.00 35.41 4.79
148 149 6.322491 GTCATTTTTACGATTTCCTGAAGGG 58.678 40.000 0.00 0.00 35.41 3.95
149 150 6.021596 CGTCATTTTTACGATTTCCTGAAGG 58.978 40.000 0.00 0.00 42.90 3.46
150 151 6.021596 CCGTCATTTTTACGATTTCCTGAAG 58.978 40.000 0.00 0.00 42.90 3.02
151 152 5.106475 CCCGTCATTTTTACGATTTCCTGAA 60.106 40.000 0.00 0.00 42.90 3.02
152 153 4.393680 CCCGTCATTTTTACGATTTCCTGA 59.606 41.667 0.00 0.00 42.90 3.86
153 154 4.658071 CCCGTCATTTTTACGATTTCCTG 58.342 43.478 0.00 0.00 42.90 3.86
154 155 3.128068 GCCCGTCATTTTTACGATTTCCT 59.872 43.478 0.00 0.00 42.90 3.36
155 156 3.431856 GCCCGTCATTTTTACGATTTCC 58.568 45.455 0.00 0.00 42.90 3.13
156 157 3.431856 GGCCCGTCATTTTTACGATTTC 58.568 45.455 0.00 0.00 42.90 2.17
157 158 2.164827 GGGCCCGTCATTTTTACGATTT 59.835 45.455 5.69 0.00 42.90 2.17
158 159 1.746787 GGGCCCGTCATTTTTACGATT 59.253 47.619 5.69 0.00 42.90 3.34
159 160 1.340211 TGGGCCCGTCATTTTTACGAT 60.340 47.619 19.37 0.00 42.90 3.73
160 161 0.036448 TGGGCCCGTCATTTTTACGA 59.964 50.000 19.37 0.00 42.90 3.43
161 162 0.450184 CTGGGCCCGTCATTTTTACG 59.550 55.000 19.37 0.00 40.01 3.18
162 163 0.815095 CCTGGGCCCGTCATTTTTAC 59.185 55.000 19.37 0.00 0.00 2.01
163 164 0.968393 GCCTGGGCCCGTCATTTTTA 60.968 55.000 19.37 0.00 34.56 1.52
164 165 2.282783 GCCTGGGCCCGTCATTTTT 61.283 57.895 19.37 0.00 34.56 1.94
165 166 2.679996 GCCTGGGCCCGTCATTTT 60.680 61.111 19.37 0.00 34.56 1.82
187 188 2.883386 GCCTAGATTTTGAGCCTGATGG 59.117 50.000 0.00 0.00 0.00 3.51
188 189 2.883386 GGCCTAGATTTTGAGCCTGATG 59.117 50.000 0.00 0.00 40.57 3.07
189 190 2.158549 GGGCCTAGATTTTGAGCCTGAT 60.159 50.000 0.84 0.00 43.36 2.90
190 191 1.212935 GGGCCTAGATTTTGAGCCTGA 59.787 52.381 0.84 0.00 43.36 3.86
191 192 1.685148 GGGCCTAGATTTTGAGCCTG 58.315 55.000 0.84 0.00 43.36 4.85
192 193 0.181350 CGGGCCTAGATTTTGAGCCT 59.819 55.000 0.84 0.00 43.36 4.58
193 194 0.180406 TCGGGCCTAGATTTTGAGCC 59.820 55.000 0.84 0.00 43.09 4.70
194 195 1.587547 CTCGGGCCTAGATTTTGAGC 58.412 55.000 0.84 0.00 0.00 4.26
195 196 1.587547 GCTCGGGCCTAGATTTTGAG 58.412 55.000 9.63 2.79 0.00 3.02
196 197 3.780624 GCTCGGGCCTAGATTTTGA 57.219 52.632 9.63 0.00 0.00 2.69
243 244 3.428282 CCGAAAAAGCCCGACCCG 61.428 66.667 0.00 0.00 0.00 5.28
244 245 3.060000 CCCGAAAAAGCCCGACCC 61.060 66.667 0.00 0.00 0.00 4.46
245 246 3.744719 GCCCGAAAAAGCCCGACC 61.745 66.667 0.00 0.00 0.00 4.79
246 247 3.744719 GGCCCGAAAAAGCCCGAC 61.745 66.667 0.00 0.00 43.76 4.79
252 253 2.989253 AAGCCCGGCCCGAAAAAG 60.989 61.111 3.71 0.00 0.00 2.27
253 254 2.986979 GAAGCCCGGCCCGAAAAA 60.987 61.111 3.71 0.00 0.00 1.94
266 267 0.771127 TATACCTGGCCATGGGAAGC 59.229 55.000 17.65 0.00 0.00 3.86
267 268 2.338809 TCTATACCTGGCCATGGGAAG 58.661 52.381 17.65 13.34 0.00 3.46
268 269 2.505672 TCTATACCTGGCCATGGGAA 57.494 50.000 17.65 9.02 0.00 3.97
269 270 2.269023 CATCTATACCTGGCCATGGGA 58.731 52.381 17.65 12.89 0.00 4.37
270 271 1.283029 CCATCTATACCTGGCCATGGG 59.717 57.143 20.97 16.10 0.00 4.00
271 272 2.269023 TCCATCTATACCTGGCCATGG 58.731 52.381 5.51 13.05 33.38 3.66
272 273 3.584406 TCTTCCATCTATACCTGGCCATG 59.416 47.826 5.51 6.06 32.30 3.66
273 274 3.843027 CTCTTCCATCTATACCTGGCCAT 59.157 47.826 5.51 0.00 32.30 4.40
274 275 3.116746 TCTCTTCCATCTATACCTGGCCA 60.117 47.826 4.71 4.71 32.30 5.36
275 276 3.511477 TCTCTTCCATCTATACCTGGCC 58.489 50.000 0.00 0.00 32.30 5.36
276 277 4.591072 AGTTCTCTTCCATCTATACCTGGC 59.409 45.833 0.00 0.00 32.30 4.85
277 278 6.435904 CCTAGTTCTCTTCCATCTATACCTGG 59.564 46.154 0.00 0.00 0.00 4.45
278 279 7.235079 TCCTAGTTCTCTTCCATCTATACCTG 58.765 42.308 0.00 0.00 0.00 4.00
279 280 7.409408 TCCTAGTTCTCTTCCATCTATACCT 57.591 40.000 0.00 0.00 0.00 3.08
280 281 8.658840 AATCCTAGTTCTCTTCCATCTATACC 57.341 38.462 0.00 0.00 0.00 2.73
281 282 8.455682 CGAATCCTAGTTCTCTTCCATCTATAC 58.544 40.741 0.00 0.00 0.00 1.47
282 283 7.612244 CCGAATCCTAGTTCTCTTCCATCTATA 59.388 40.741 0.00 0.00 0.00 1.31
283 284 6.435904 CCGAATCCTAGTTCTCTTCCATCTAT 59.564 42.308 0.00 0.00 0.00 1.98
284 285 5.770663 CCGAATCCTAGTTCTCTTCCATCTA 59.229 44.000 0.00 0.00 0.00 1.98
339 340 0.411058 AAGGGATGCCTTGCTTTCCT 59.589 50.000 18.95 0.00 42.55 3.36
341 342 1.475682 CTGAAGGGATGCCTTGCTTTC 59.524 52.381 24.83 9.18 0.00 2.62
348 349 2.274760 GCTGCTGAAGGGATGCCT 59.725 61.111 0.00 0.00 0.00 4.75
350 351 2.772691 GCTGCTGCTGAAGGGATGC 61.773 63.158 10.92 0.00 36.03 3.91
375 376 8.753497 ATCTATTGTTATTGGTCCTCCTTTTC 57.247 34.615 0.00 0.00 34.23 2.29
386 387 7.088272 TCGTCGGTATGATCTATTGTTATTGG 58.912 38.462 0.00 0.00 0.00 3.16
390 391 7.361799 CCTCATCGTCGGTATGATCTATTGTTA 60.362 40.741 0.00 0.00 33.08 2.41
394 395 5.254115 TCCTCATCGTCGGTATGATCTATT 58.746 41.667 0.00 0.00 33.08 1.73
478 479 2.100197 CTATGGTGTCTGGAGGTCGAA 58.900 52.381 0.00 0.00 0.00 3.71
518 520 0.320946 GACGGTTTGGTGAATCCCGA 60.321 55.000 3.10 0.00 41.08 5.14
523 525 0.953960 GAGCCGACGGTTTGGTGAAT 60.954 55.000 16.73 0.00 0.00 2.57
524 526 1.595929 GAGCCGACGGTTTGGTGAA 60.596 57.895 16.73 0.00 0.00 3.18
527 529 1.885163 CTAGGAGCCGACGGTTTGGT 61.885 60.000 16.73 0.75 0.00 3.67
532 534 2.823147 CGTCTAGGAGCCGACGGT 60.823 66.667 16.73 1.83 46.61 4.83
560 563 1.734163 TCATACGCTGTCAGACGAGA 58.266 50.000 19.08 12.29 0.00 4.04
571 574 1.327690 TTCCTCGGGCTTCATACGCT 61.328 55.000 0.00 0.00 0.00 5.07
573 576 1.134788 AGTTTCCTCGGGCTTCATACG 60.135 52.381 0.00 0.00 0.00 3.06
577 580 3.008594 TGAATAAGTTTCCTCGGGCTTCA 59.991 43.478 0.00 0.00 0.00 3.02
615 618 0.463116 AGACGTTGTCAAGGCCGTTT 60.463 50.000 5.19 0.00 34.60 3.60
626 629 5.936372 GGATTAGGGTTAAGAAAGACGTTGT 59.064 40.000 0.00 0.00 0.00 3.32
636 639 8.921205 GTGTTCATAGTAGGATTAGGGTTAAGA 58.079 37.037 0.00 0.00 0.00 2.10
648 651 5.163290 TGTGTTGGTTGTGTTCATAGTAGGA 60.163 40.000 0.00 0.00 0.00 2.94
655 658 3.351740 TCTGTGTGTTGGTTGTGTTCAT 58.648 40.909 0.00 0.00 0.00 2.57
656 659 2.784347 TCTGTGTGTTGGTTGTGTTCA 58.216 42.857 0.00 0.00 0.00 3.18
661 664 1.140052 TCGGATCTGTGTGTTGGTTGT 59.860 47.619 0.42 0.00 0.00 3.32
667 670 1.002087 GGAACCTCGGATCTGTGTGTT 59.998 52.381 0.42 5.91 0.00 3.32
744 748 1.830477 TGGCTCCTTTTGTGTTTTGCT 59.170 42.857 0.00 0.00 0.00 3.91
748 752 0.744281 CCGTGGCTCCTTTTGTGTTT 59.256 50.000 0.00 0.00 0.00 2.83
764 769 1.372623 GGCGAAAAGAGACGACCGT 60.373 57.895 0.00 0.00 0.00 4.83
771 776 0.885879 TGTAGCGAGGCGAAAAGAGA 59.114 50.000 0.00 0.00 0.00 3.10
784 789 2.159707 CCACAAAGAACGGATTGTAGCG 60.160 50.000 0.00 0.00 37.66 4.26
789 794 2.484264 GACCTCCACAAAGAACGGATTG 59.516 50.000 0.00 0.00 0.00 2.67
790 795 2.779506 GACCTCCACAAAGAACGGATT 58.220 47.619 0.00 0.00 0.00 3.01
794 799 0.600255 AGCGACCTCCACAAAGAACG 60.600 55.000 0.00 0.00 0.00 3.95
796 801 0.319555 CGAGCGACCTCCACAAAGAA 60.320 55.000 0.00 0.00 34.49 2.52
803 808 1.303398 AAGAGACGAGCGACCTCCA 60.303 57.895 0.00 0.00 34.49 3.86
812 817 2.051879 TTTCGTGCAGAAGAGACGAG 57.948 50.000 0.00 0.00 42.59 4.18
828 833 7.650834 TTTCCATCAAAATGTCCGAAATTTC 57.349 32.000 8.20 8.20 0.00 2.17
829 834 8.443953 TTTTTCCATCAAAATGTCCGAAATTT 57.556 26.923 0.00 0.00 33.82 1.82
830 835 7.714813 ACTTTTTCCATCAAAATGTCCGAAATT 59.285 29.630 0.00 0.00 37.66 1.82
831 836 7.216494 ACTTTTTCCATCAAAATGTCCGAAAT 58.784 30.769 0.00 0.00 37.66 2.17
832 837 6.578023 ACTTTTTCCATCAAAATGTCCGAAA 58.422 32.000 0.00 0.00 37.66 3.46
836 841 7.281999 TCCAAAACTTTTTCCATCAAAATGTCC 59.718 33.333 0.00 0.00 40.00 4.02
872 877 3.954200 TCTCTCATTTGGCATGCACTTA 58.046 40.909 21.36 1.47 0.00 2.24
873 878 2.799017 TCTCTCATTTGGCATGCACTT 58.201 42.857 21.36 0.00 0.00 3.16
878 883 4.142249 TGCAAGAATCTCTCATTTGGCATG 60.142 41.667 0.00 0.00 0.00 4.06
883 888 7.591165 TCTCTTTTGCAAGAATCTCTCATTTG 58.409 34.615 0.00 0.00 38.63 2.32
884 889 7.756395 TCTCTTTTGCAAGAATCTCTCATTT 57.244 32.000 0.00 0.00 38.63 2.32
885 890 7.756395 TTCTCTTTTGCAAGAATCTCTCATT 57.244 32.000 0.00 0.00 38.63 2.57
886 891 7.941431 ATTCTCTTTTGCAAGAATCTCTCAT 57.059 32.000 5.68 0.00 37.63 2.90
887 892 7.756395 AATTCTCTTTTGCAAGAATCTCTCA 57.244 32.000 10.93 0.00 40.47 3.27
943 968 9.511272 GGTCCCTAAATTTGTTTTACTCTCTAA 57.489 33.333 0.00 0.00 0.00 2.10
976 1001 3.818787 CGAATGTGCTGGGCTGCC 61.819 66.667 11.05 11.05 0.00 4.85
983 1008 1.442520 CGGGCAAACGAATGTGCTG 60.443 57.895 0.00 0.00 40.70 4.41
992 1017 2.018544 TTTGACTGACGGGCAAACG 58.981 52.632 11.44 0.00 46.84 3.60
1102 1127 1.552792 CTGGAGAGGAGGGAGTTGAAC 59.447 57.143 0.00 0.00 0.00 3.18
1130 1155 4.393778 GTGGGAGGGGTCGGAGGA 62.394 72.222 0.00 0.00 0.00 3.71
1156 1181 4.821589 CGGAAGAGGTGGAGCGGC 62.822 72.222 0.00 0.00 0.00 6.53
1394 1428 1.573829 GGCATTTCGTCGAACAGGCA 61.574 55.000 20.58 3.67 0.00 4.75
1685 1720 2.380064 TGCATCCTGTCAAAAACCCT 57.620 45.000 0.00 0.00 0.00 4.34
1693 1728 1.870064 TCCTCTGATGCATCCTGTCA 58.130 50.000 23.67 5.47 0.00 3.58
1729 1764 2.126142 TACCCTCCCACCATGGCA 59.874 61.111 13.04 0.00 35.79 4.92
1750 1785 2.358957 TCCTCAAACATGCCATTCTCG 58.641 47.619 0.00 0.00 0.00 4.04
1776 1811 2.046285 ATTGCCCGGAAAGCCTTCG 61.046 57.895 0.73 0.00 31.77 3.79
1905 1940 1.548357 CCCATAGAGCCCCATCCTCG 61.548 65.000 0.00 0.00 34.56 4.63
2032 2067 2.178106 ACCAAGTACCATTGAACCCCAA 59.822 45.455 0.00 0.00 39.41 4.12
2221 2256 2.500098 CTCCTCGGTTGGATGGACTTTA 59.500 50.000 0.00 0.00 35.30 1.85
2386 2421 4.006319 ACCTGCAAGCTAAATCTTGAGTC 58.994 43.478 7.60 0.00 44.61 3.36
2596 2631 5.006746 ACTGAAAGAGTCGTGAACAATTCAC 59.993 40.000 10.96 10.96 46.75 3.18
2608 2643 3.312828 CTCTGAACCACTGAAAGAGTCG 58.687 50.000 0.00 0.00 37.43 4.18
2727 2763 6.471233 TGAGCATAGAGTAAATACAGCAGT 57.529 37.500 0.00 0.00 0.00 4.40
2736 2772 7.937649 ACGTACATGTATGAGCATAGAGTAAA 58.062 34.615 27.85 0.00 0.00 2.01
2764 2800 1.961793 TGCTGTAATAACATCCGCCC 58.038 50.000 0.00 0.00 34.37 6.13
2770 2806 5.390613 GCACTTCGTTTGCTGTAATAACAT 58.609 37.500 0.00 0.00 37.00 2.71
2771 2807 4.319911 GGCACTTCGTTTGCTGTAATAACA 60.320 41.667 5.81 0.00 40.07 2.41
2896 2932 4.388469 GCGCCAATTTCTGAAGCAATTAAA 59.612 37.500 0.00 0.00 0.00 1.52
2899 2935 2.028748 AGCGCCAATTTCTGAAGCAATT 60.029 40.909 2.29 0.00 32.04 2.32
2917 2954 5.371115 TTCTGGTGAAAAATAAGGAAGCG 57.629 39.130 0.00 0.00 0.00 4.68
2998 3037 3.450457 CCTCATCTAGCAACTCACTTCCT 59.550 47.826 0.00 0.00 0.00 3.36
2999 3038 3.196685 ACCTCATCTAGCAACTCACTTCC 59.803 47.826 0.00 0.00 0.00 3.46
3000 3039 4.464069 ACCTCATCTAGCAACTCACTTC 57.536 45.455 0.00 0.00 0.00 3.01
3003 3042 4.180057 CTCAACCTCATCTAGCAACTCAC 58.820 47.826 0.00 0.00 0.00 3.51
3019 3058 1.604278 GGTTCTGCTGTCAACTCAACC 59.396 52.381 0.00 0.00 0.00 3.77
3020 3059 2.288666 TGGTTCTGCTGTCAACTCAAC 58.711 47.619 0.00 0.00 0.00 3.18
3021 3060 2.708216 TGGTTCTGCTGTCAACTCAA 57.292 45.000 0.00 0.00 0.00 3.02
3194 3235 2.900716 TTCAGTCGATGGTCACACAA 57.099 45.000 0.00 0.00 0.00 3.33
3198 3239 2.349886 GCTCATTTCAGTCGATGGTCAC 59.650 50.000 0.00 0.00 0.00 3.67
3255 3296 9.710900 AACTCAAGTCAAAGAGAATTTTGTTTT 57.289 25.926 0.00 0.00 38.77 2.43
3258 3299 7.761249 CCAAACTCAAGTCAAAGAGAATTTTGT 59.239 33.333 0.00 0.00 38.77 2.83
3265 3307 4.164221 ACCTCCAAACTCAAGTCAAAGAGA 59.836 41.667 0.00 0.00 35.83 3.10
3345 3387 4.865925 TGTTGTCGTCCATTTTATAGTCGG 59.134 41.667 0.00 0.00 0.00 4.79
3392 3434 0.327191 GGGAGGAGGGACCAACCATA 60.327 60.000 8.55 0.00 42.04 2.74
3417 3459 2.119484 TTGTGTAGCCGGTCCCAAGG 62.119 60.000 1.90 0.00 0.00 3.61
3442 3484 7.415206 CCAGCTATGATGTTTTAAGGTAACACC 60.415 40.741 0.00 0.00 38.23 4.16
3484 3526 9.710818 AAGAGTTCCACCACTATAAATCTACTA 57.289 33.333 0.00 0.00 0.00 1.82
3726 3779 8.704668 TCTAAGCAACCATATGAGTCATCTAAA 58.295 33.333 9.42 0.00 0.00 1.85
3732 3785 6.115446 CCTTTCTAAGCAACCATATGAGTCA 58.885 40.000 3.65 0.00 0.00 3.41
3745 3809 7.238710 AGGTTTTAAGATTCCCTTTCTAAGCA 58.761 34.615 0.00 0.00 36.34 3.91
3755 3819 6.901300 ACATCTAGGAGGTTTTAAGATTCCC 58.099 40.000 0.00 0.00 0.00 3.97
3793 3857 5.637810 GCAGACTGCAGTAAATAGTACAACA 59.362 40.000 21.73 0.00 44.26 3.33
3810 3877 3.562505 GCATTTCTGACTTTGCAGACTG 58.437 45.455 0.00 0.00 44.08 3.51
3831 3898 6.573664 TTAGTCTTGGAATTCAATGTGTGG 57.426 37.500 7.93 0.00 34.45 4.17
3834 3901 8.526147 AGGAAATTAGTCTTGGAATTCAATGTG 58.474 33.333 7.93 0.00 34.45 3.21
3839 3906 5.123820 CGCAGGAAATTAGTCTTGGAATTCA 59.876 40.000 7.93 0.00 0.00 2.57
3862 3929 1.335810 CATGGATTTGGATCAGTGCCG 59.664 52.381 0.00 0.00 33.77 5.69
3881 3948 2.426522 GCTTAGGAGTGTTGATGCACA 58.573 47.619 0.00 0.00 41.52 4.57
4040 4185 2.165641 CTCACGGTCACAGGTATAGCAA 59.834 50.000 4.48 0.00 0.00 3.91
4041 4186 1.749063 CTCACGGTCACAGGTATAGCA 59.251 52.381 4.48 0.00 0.00 3.49
4042 4187 2.022195 TCTCACGGTCACAGGTATAGC 58.978 52.381 0.00 0.00 0.00 2.97
4043 4188 3.181489 GGTTCTCACGGTCACAGGTATAG 60.181 52.174 0.00 0.00 0.00 1.31
4044 4189 2.756760 GGTTCTCACGGTCACAGGTATA 59.243 50.000 0.00 0.00 0.00 1.47
4045 4190 1.549170 GGTTCTCACGGTCACAGGTAT 59.451 52.381 0.00 0.00 0.00 2.73
4046 4191 0.963962 GGTTCTCACGGTCACAGGTA 59.036 55.000 0.00 0.00 0.00 3.08
4047 4192 1.046472 TGGTTCTCACGGTCACAGGT 61.046 55.000 0.00 0.00 0.00 4.00
4048 4193 0.321671 ATGGTTCTCACGGTCACAGG 59.678 55.000 0.00 0.00 0.00 4.00
4049 4194 2.069273 GAATGGTTCTCACGGTCACAG 58.931 52.381 0.00 0.00 0.00 3.66
4050 4195 1.270625 GGAATGGTTCTCACGGTCACA 60.271 52.381 0.00 0.00 0.00 3.58
4051 4196 1.270625 TGGAATGGTTCTCACGGTCAC 60.271 52.381 0.00 0.00 0.00 3.67
4052 4197 1.052617 TGGAATGGTTCTCACGGTCA 58.947 50.000 0.00 0.00 0.00 4.02
4053 4198 2.009774 CATGGAATGGTTCTCACGGTC 58.990 52.381 0.00 0.00 41.79 4.79
4054 4199 2.113860 CATGGAATGGTTCTCACGGT 57.886 50.000 0.00 0.00 41.79 4.83
4055 4200 2.420022 GAACATGGAATGGTTCTCACGG 59.580 50.000 0.00 0.00 46.57 4.94
4056 4201 2.420022 GGAACATGGAATGGTTCTCACG 59.580 50.000 0.00 0.00 46.57 4.35
4061 4206 3.420893 TGACAGGAACATGGAATGGTTC 58.579 45.455 0.00 0.00 46.57 3.62
4062 4207 3.524095 TGACAGGAACATGGAATGGTT 57.476 42.857 0.00 0.00 46.57 3.67
4066 4211 4.229123 AGGATCTTGACAGGAACATGGAAT 59.771 41.667 0.00 0.00 0.00 3.01
4067 4212 3.588842 AGGATCTTGACAGGAACATGGAA 59.411 43.478 0.00 0.00 0.00 3.53
4068 4213 3.184628 AGGATCTTGACAGGAACATGGA 58.815 45.455 0.00 0.00 0.00 3.41
4069 4214 3.641434 AGGATCTTGACAGGAACATGG 57.359 47.619 0.00 0.00 0.00 3.66
4070 4215 5.972107 AAAAGGATCTTGACAGGAACATG 57.028 39.130 0.00 0.00 0.00 3.21
4071 4216 5.182001 CGAAAAAGGATCTTGACAGGAACAT 59.818 40.000 0.00 0.00 0.00 2.71
4072 4217 4.515191 CGAAAAAGGATCTTGACAGGAACA 59.485 41.667 0.00 0.00 0.00 3.18
4073 4218 4.755123 TCGAAAAAGGATCTTGACAGGAAC 59.245 41.667 0.00 0.00 0.00 3.62
4074 4219 4.968259 TCGAAAAAGGATCTTGACAGGAA 58.032 39.130 0.00 0.00 0.00 3.36
4075 4220 4.040461 ACTCGAAAAAGGATCTTGACAGGA 59.960 41.667 0.00 0.00 0.00 3.86
4076 4221 4.319177 ACTCGAAAAAGGATCTTGACAGG 58.681 43.478 0.00 0.00 0.00 4.00
4077 4222 4.991056 TGACTCGAAAAAGGATCTTGACAG 59.009 41.667 0.00 0.00 0.00 3.51
4078 4223 4.956085 TGACTCGAAAAAGGATCTTGACA 58.044 39.130 0.00 0.00 0.00 3.58
4079 4224 6.100792 GATGACTCGAAAAAGGATCTTGAC 57.899 41.667 0.00 0.00 0.00 3.18
4113 4258 9.998106 GTTACATAACATCCTAATCCAGTACAT 57.002 33.333 0.00 0.00 36.25 2.29
4114 4259 9.209048 AGTTACATAACATCCTAATCCAGTACA 57.791 33.333 4.67 0.00 38.62 2.90
4115 4260 9.477484 CAGTTACATAACATCCTAATCCAGTAC 57.523 37.037 4.67 0.00 38.62 2.73
4116 4261 9.429109 TCAGTTACATAACATCCTAATCCAGTA 57.571 33.333 4.67 0.00 38.62 2.74
4117 4262 8.319057 TCAGTTACATAACATCCTAATCCAGT 57.681 34.615 4.67 0.00 38.62 4.00
4118 4263 9.784531 ATTCAGTTACATAACATCCTAATCCAG 57.215 33.333 4.67 0.00 38.62 3.86
4119 4264 9.778741 GATTCAGTTACATAACATCCTAATCCA 57.221 33.333 4.67 0.00 38.62 3.41
4120 4265 9.778741 TGATTCAGTTACATAACATCCTAATCC 57.221 33.333 4.67 0.00 38.62 3.01
4122 4267 9.784531 CCTGATTCAGTTACATAACATCCTAAT 57.215 33.333 12.54 0.00 38.62 1.73
4123 4268 8.768397 ACCTGATTCAGTTACATAACATCCTAA 58.232 33.333 12.54 0.00 38.62 2.69
4124 4269 8.204160 CACCTGATTCAGTTACATAACATCCTA 58.796 37.037 12.54 0.00 38.62 2.94
4125 4270 7.050377 CACCTGATTCAGTTACATAACATCCT 58.950 38.462 12.54 0.00 38.62 3.24
4126 4271 6.238484 GCACCTGATTCAGTTACATAACATCC 60.238 42.308 12.54 0.00 38.62 3.51
4127 4272 6.540189 AGCACCTGATTCAGTTACATAACATC 59.460 38.462 12.54 0.40 38.62 3.06
4128 4273 6.418101 AGCACCTGATTCAGTTACATAACAT 58.582 36.000 12.54 0.00 38.62 2.71
4129 4274 5.804639 AGCACCTGATTCAGTTACATAACA 58.195 37.500 12.54 0.00 38.62 2.41
4130 4275 5.294552 GGAGCACCTGATTCAGTTACATAAC 59.705 44.000 12.54 0.00 36.46 1.89
4131 4276 5.428253 GGAGCACCTGATTCAGTTACATAA 58.572 41.667 12.54 0.00 0.00 1.90
4132 4277 4.141711 GGGAGCACCTGATTCAGTTACATA 60.142 45.833 12.54 0.00 35.85 2.29
4133 4278 3.370953 GGGAGCACCTGATTCAGTTACAT 60.371 47.826 12.54 0.00 35.85 2.29
4134 4279 2.027192 GGGAGCACCTGATTCAGTTACA 60.027 50.000 12.54 0.00 35.85 2.41
4135 4280 2.027192 TGGGAGCACCTGATTCAGTTAC 60.027 50.000 12.54 1.56 41.11 2.50
4136 4281 2.265367 TGGGAGCACCTGATTCAGTTA 58.735 47.619 12.54 0.00 41.11 2.24
4137 4282 1.067295 TGGGAGCACCTGATTCAGTT 58.933 50.000 12.54 0.00 41.11 3.16
4138 4283 1.064906 CATGGGAGCACCTGATTCAGT 60.065 52.381 12.54 0.00 41.11 3.41
4139 4284 1.676746 CATGGGAGCACCTGATTCAG 58.323 55.000 6.70 6.70 41.11 3.02
4140 4285 0.256752 CCATGGGAGCACCTGATTCA 59.743 55.000 2.85 0.00 41.11 2.57
4141 4286 0.257039 ACCATGGGAGCACCTGATTC 59.743 55.000 18.09 0.00 41.11 2.52
4142 4287 1.595311 TACCATGGGAGCACCTGATT 58.405 50.000 18.09 0.00 41.11 2.57
4143 4288 1.825105 ATACCATGGGAGCACCTGAT 58.175 50.000 18.09 0.00 41.11 2.90
4144 4289 1.490490 GAATACCATGGGAGCACCTGA 59.510 52.381 18.09 0.00 41.11 3.86
4145 4290 1.492176 AGAATACCATGGGAGCACCTG 59.508 52.381 18.09 0.00 41.11 4.00
4146 4291 1.898863 AGAATACCATGGGAGCACCT 58.101 50.000 18.09 0.30 41.11 4.00
4147 4292 2.301346 CAAGAATACCATGGGAGCACC 58.699 52.381 18.09 0.00 40.81 5.01
4148 4293 1.678101 GCAAGAATACCATGGGAGCAC 59.322 52.381 18.09 3.10 0.00 4.40
4149 4294 1.565759 AGCAAGAATACCATGGGAGCA 59.434 47.619 18.09 0.00 0.00 4.26
4150 4295 2.355010 AGCAAGAATACCATGGGAGC 57.645 50.000 18.09 6.89 0.00 4.70
4151 4296 3.817647 GCTAAGCAAGAATACCATGGGAG 59.182 47.826 18.09 0.00 0.00 4.30
4152 4297 3.201930 TGCTAAGCAAGAATACCATGGGA 59.798 43.478 18.09 8.35 34.76 4.37
4153 4298 3.554934 TGCTAAGCAAGAATACCATGGG 58.445 45.455 18.09 0.00 34.76 4.00
4166 4311 9.801873 GGATAGTTAAATCAAATTTGCTAAGCA 57.198 29.630 13.54 0.00 36.47 3.91
4171 4316 9.657419 CCAAAGGATAGTTAAATCAAATTTGCT 57.343 29.630 13.54 0.29 33.82 3.91
4172 4317 8.882736 CCCAAAGGATAGTTAAATCAAATTTGC 58.117 33.333 13.54 0.00 32.07 3.68
4192 4337 1.889170 GCTTCCTTGACCTTCCCAAAG 59.111 52.381 0.00 0.00 0.00 2.77
4193 4338 1.499007 AGCTTCCTTGACCTTCCCAAA 59.501 47.619 0.00 0.00 0.00 3.28
4194 4339 1.149101 AGCTTCCTTGACCTTCCCAA 58.851 50.000 0.00 0.00 0.00 4.12
4195 4340 1.628846 GTAGCTTCCTTGACCTTCCCA 59.371 52.381 0.00 0.00 0.00 4.37
4196 4341 1.909986 AGTAGCTTCCTTGACCTTCCC 59.090 52.381 0.00 0.00 0.00 3.97
4197 4342 2.417515 CGAGTAGCTTCCTTGACCTTCC 60.418 54.545 0.00 0.00 0.00 3.46
4198 4343 2.231721 ACGAGTAGCTTCCTTGACCTTC 59.768 50.000 0.00 0.00 0.00 3.46
4199 4344 2.249139 ACGAGTAGCTTCCTTGACCTT 58.751 47.619 0.00 0.00 0.00 3.50
4200 4345 1.926108 ACGAGTAGCTTCCTTGACCT 58.074 50.000 0.00 0.00 0.00 3.85
4201 4346 2.029290 TCAACGAGTAGCTTCCTTGACC 60.029 50.000 0.00 0.00 0.00 4.02
4202 4347 3.299340 TCAACGAGTAGCTTCCTTGAC 57.701 47.619 0.00 0.00 0.00 3.18
4203 4348 3.368427 CCATCAACGAGTAGCTTCCTTGA 60.368 47.826 0.00 0.00 30.46 3.02
4204 4349 2.932614 CCATCAACGAGTAGCTTCCTTG 59.067 50.000 0.00 0.00 0.00 3.61
4205 4350 2.832129 TCCATCAACGAGTAGCTTCCTT 59.168 45.455 0.00 0.00 0.00 3.36
4206 4351 2.457598 TCCATCAACGAGTAGCTTCCT 58.542 47.619 0.00 0.00 0.00 3.36
4207 4352 2.961526 TCCATCAACGAGTAGCTTCC 57.038 50.000 0.00 0.00 0.00 3.46
4208 4353 3.619038 CCTTTCCATCAACGAGTAGCTTC 59.381 47.826 0.00 0.00 0.00 3.86
4209 4354 3.260884 TCCTTTCCATCAACGAGTAGCTT 59.739 43.478 0.00 0.00 0.00 3.74
4210 4355 2.832129 TCCTTTCCATCAACGAGTAGCT 59.168 45.455 0.00 0.00 0.00 3.32
4211 4356 2.930682 GTCCTTTCCATCAACGAGTAGC 59.069 50.000 0.00 0.00 0.00 3.58
4212 4357 4.158764 AGAGTCCTTTCCATCAACGAGTAG 59.841 45.833 0.00 0.00 0.00 2.57
4213 4358 4.082190 CAGAGTCCTTTCCATCAACGAGTA 60.082 45.833 0.00 0.00 0.00 2.59
4214 4359 2.900546 AGAGTCCTTTCCATCAACGAGT 59.099 45.455 0.00 0.00 0.00 4.18
4215 4360 3.056536 TCAGAGTCCTTTCCATCAACGAG 60.057 47.826 0.00 0.00 0.00 4.18
4216 4361 2.897326 TCAGAGTCCTTTCCATCAACGA 59.103 45.455 0.00 0.00 0.00 3.85
4217 4362 3.319137 TCAGAGTCCTTTCCATCAACG 57.681 47.619 0.00 0.00 0.00 4.10
4218 4363 6.094186 GGTTAATCAGAGTCCTTTCCATCAAC 59.906 42.308 0.00 0.00 0.00 3.18
4219 4364 6.180472 GGTTAATCAGAGTCCTTTCCATCAA 58.820 40.000 0.00 0.00 0.00 2.57
4220 4365 5.250543 TGGTTAATCAGAGTCCTTTCCATCA 59.749 40.000 0.00 0.00 0.00 3.07
4221 4366 5.745227 TGGTTAATCAGAGTCCTTTCCATC 58.255 41.667 0.00 0.00 0.00 3.51
4222 4367 5.339530 CCTGGTTAATCAGAGTCCTTTCCAT 60.340 44.000 17.60 0.00 36.93 3.41
4223 4368 4.019321 CCTGGTTAATCAGAGTCCTTTCCA 60.019 45.833 17.60 0.00 36.93 3.53
4224 4369 4.019231 ACCTGGTTAATCAGAGTCCTTTCC 60.019 45.833 17.60 0.00 36.93 3.13
4225 4370 4.938226 CACCTGGTTAATCAGAGTCCTTTC 59.062 45.833 17.60 0.00 36.93 2.62
4226 4371 4.597507 TCACCTGGTTAATCAGAGTCCTTT 59.402 41.667 17.60 0.00 36.93 3.11
4227 4372 4.168101 TCACCTGGTTAATCAGAGTCCTT 58.832 43.478 17.60 0.00 36.93 3.36
4228 4373 3.772025 CTCACCTGGTTAATCAGAGTCCT 59.228 47.826 17.60 0.00 36.93 3.85
4229 4374 3.769844 TCTCACCTGGTTAATCAGAGTCC 59.230 47.826 17.60 0.00 36.93 3.85
4230 4375 4.464597 ACTCTCACCTGGTTAATCAGAGTC 59.535 45.833 17.60 0.00 35.31 3.36
4231 4376 4.421131 ACTCTCACCTGGTTAATCAGAGT 58.579 43.478 17.60 9.29 36.93 3.24
4232 4377 4.142049 GGACTCTCACCTGGTTAATCAGAG 60.142 50.000 17.60 8.66 36.93 3.35
4233 4378 3.769844 GGACTCTCACCTGGTTAATCAGA 59.230 47.826 17.60 0.00 36.93 3.27
4234 4379 3.118592 GGGACTCTCACCTGGTTAATCAG 60.119 52.174 8.89 8.89 34.70 2.90
4235 4380 2.838202 GGGACTCTCACCTGGTTAATCA 59.162 50.000 0.00 0.00 0.00 2.57
4236 4381 2.170817 GGGGACTCTCACCTGGTTAATC 59.829 54.545 0.00 0.00 36.87 1.75
4237 4382 2.197465 GGGGACTCTCACCTGGTTAAT 58.803 52.381 0.00 0.00 36.87 1.40
4238 4383 1.652947 GGGGACTCTCACCTGGTTAA 58.347 55.000 0.00 0.00 36.87 2.01
4239 4384 0.613853 CGGGGACTCTCACCTGGTTA 60.614 60.000 0.00 0.00 37.97 2.85
4240 4385 1.913762 CGGGGACTCTCACCTGGTT 60.914 63.158 0.00 0.00 37.97 3.67
4241 4386 2.283966 CGGGGACTCTCACCTGGT 60.284 66.667 0.00 0.00 37.97 4.00
4242 4387 3.775654 GCGGGGACTCTCACCTGG 61.776 72.222 0.00 0.00 37.97 4.45
4243 4388 2.303549 GATGCGGGGACTCTCACCTG 62.304 65.000 0.00 0.00 37.97 4.00
4244 4389 2.039624 ATGCGGGGACTCTCACCT 59.960 61.111 0.00 0.00 37.97 4.00
4245 4390 2.022240 GAGATGCGGGGACTCTCACC 62.022 65.000 0.00 0.00 36.31 4.02
4246 4391 1.040339 AGAGATGCGGGGACTCTCAC 61.040 60.000 0.00 0.00 38.29 3.51
4247 4392 1.039785 CAGAGATGCGGGGACTCTCA 61.040 60.000 0.00 0.00 38.69 3.27
4248 4393 1.040339 ACAGAGATGCGGGGACTCTC 61.040 60.000 0.00 0.00 38.69 3.20
4249 4394 0.616111 AACAGAGATGCGGGGACTCT 60.616 55.000 0.00 0.00 40.94 3.24
4250 4395 0.250513 AAACAGAGATGCGGGGACTC 59.749 55.000 0.00 0.00 0.00 3.36
4251 4396 0.693049 AAAACAGAGATGCGGGGACT 59.307 50.000 0.00 0.00 0.00 3.85
4252 4397 1.087501 GAAAACAGAGATGCGGGGAC 58.912 55.000 0.00 0.00 0.00 4.46
4253 4398 0.035439 GGAAAACAGAGATGCGGGGA 60.035 55.000 0.00 0.00 0.00 4.81
4254 4399 0.322456 TGGAAAACAGAGATGCGGGG 60.322 55.000 0.00 0.00 0.00 5.73
4255 4400 1.755179 ATGGAAAACAGAGATGCGGG 58.245 50.000 0.00 0.00 0.00 6.13
4256 4401 3.012518 AGAATGGAAAACAGAGATGCGG 58.987 45.455 0.00 0.00 0.00 5.69
4257 4402 4.083110 ACAAGAATGGAAAACAGAGATGCG 60.083 41.667 0.00 0.00 0.00 4.73
4258 4403 5.382618 ACAAGAATGGAAAACAGAGATGC 57.617 39.130 0.00 0.00 0.00 3.91
4259 4404 7.439157 TGTACAAGAATGGAAAACAGAGATG 57.561 36.000 0.00 0.00 0.00 2.90
4260 4405 8.641498 ATTGTACAAGAATGGAAAACAGAGAT 57.359 30.769 14.65 0.00 0.00 2.75
4261 4406 8.463930 AATTGTACAAGAATGGAAAACAGAGA 57.536 30.769 14.65 0.00 0.00 3.10
4267 4412 9.921637 GGTTCATAATTGTACAAGAATGGAAAA 57.078 29.630 22.88 13.21 0.00 2.29
4268 4413 9.308000 AGGTTCATAATTGTACAAGAATGGAAA 57.692 29.630 22.88 13.69 0.00 3.13
4269 4414 8.877864 AGGTTCATAATTGTACAAGAATGGAA 57.122 30.769 22.88 15.75 0.00 3.53
4270 4415 8.877864 AAGGTTCATAATTGTACAAGAATGGA 57.122 30.769 22.88 16.61 0.00 3.41
4271 4416 7.910162 CGAAGGTTCATAATTGTACAAGAATGG 59.090 37.037 22.88 10.33 0.00 3.16
4272 4417 8.826546 CGAAGGTTCATAATTGTACAAGAATG 57.173 34.615 19.65 19.65 0.00 2.67
4297 4442 1.599916 GCAATCTCGTACGGAGCTACC 60.600 57.143 16.52 0.00 42.82 3.18
4298 4443 1.334243 AGCAATCTCGTACGGAGCTAC 59.666 52.381 16.52 1.81 42.82 3.58
4299 4444 1.676746 AGCAATCTCGTACGGAGCTA 58.323 50.000 16.52 0.00 42.82 3.32
4300 4445 0.818296 AAGCAATCTCGTACGGAGCT 59.182 50.000 16.52 14.06 42.82 4.09
4301 4446 2.033049 TCTAAGCAATCTCGTACGGAGC 59.967 50.000 16.52 12.08 42.82 4.70
4302 4447 3.064958 TGTCTAAGCAATCTCGTACGGAG 59.935 47.826 16.52 11.49 44.58 4.63
4303 4448 3.011818 TGTCTAAGCAATCTCGTACGGA 58.988 45.455 16.52 11.97 0.00 4.69
4304 4449 3.416119 TGTCTAAGCAATCTCGTACGG 57.584 47.619 16.52 6.42 0.00 4.02
4305 4450 8.897457 ATATATTGTCTAAGCAATCTCGTACG 57.103 34.615 9.53 9.53 39.50 3.67
4309 4454 9.322776 GCAAAATATATTGTCTAAGCAATCTCG 57.677 33.333 0.00 0.00 39.50 4.04
4310 4455 9.322776 CGCAAAATATATTGTCTAAGCAATCTC 57.677 33.333 0.00 0.00 39.50 2.75
4311 4456 9.056005 TCGCAAAATATATTGTCTAAGCAATCT 57.944 29.630 0.00 0.00 39.50 2.40
4312 4457 9.831737 ATCGCAAAATATATTGTCTAAGCAATC 57.168 29.630 0.00 0.00 39.50 2.67
4313 4458 9.831737 GATCGCAAAATATATTGTCTAAGCAAT 57.168 29.630 0.00 0.00 41.42 3.56
4314 4459 9.056005 AGATCGCAAAATATATTGTCTAAGCAA 57.944 29.630 0.00 0.00 32.80 3.91
4315 4460 8.607441 AGATCGCAAAATATATTGTCTAAGCA 57.393 30.769 0.00 0.00 32.80 3.91
4316 4461 9.322776 CAAGATCGCAAAATATATTGTCTAAGC 57.677 33.333 0.00 0.00 32.80 3.09
4317 4462 9.322776 GCAAGATCGCAAAATATATTGTCTAAG 57.677 33.333 0.00 0.00 32.80 2.18
4318 4463 9.056005 AGCAAGATCGCAAAATATATTGTCTAA 57.944 29.630 0.00 0.00 32.80 2.10
4319 4464 8.498358 CAGCAAGATCGCAAAATATATTGTCTA 58.502 33.333 0.00 0.00 32.80 2.59
4320 4465 7.358066 CAGCAAGATCGCAAAATATATTGTCT 58.642 34.615 0.00 0.00 32.80 3.41
4321 4466 6.087291 GCAGCAAGATCGCAAAATATATTGTC 59.913 38.462 0.00 0.00 32.80 3.18
4322 4467 5.916883 GCAGCAAGATCGCAAAATATATTGT 59.083 36.000 0.00 0.00 32.80 2.71
4323 4468 6.147581 AGCAGCAAGATCGCAAAATATATTG 58.852 36.000 0.00 0.00 0.00 1.90
4324 4469 6.323203 AGCAGCAAGATCGCAAAATATATT 57.677 33.333 0.00 0.00 0.00 1.28
4325 4470 5.954296 AGCAGCAAGATCGCAAAATATAT 57.046 34.783 0.00 0.00 0.00 0.86
4326 4471 7.300320 CAATAGCAGCAAGATCGCAAAATATA 58.700 34.615 0.00 0.00 0.00 0.86
4327 4472 5.954296 ATAGCAGCAAGATCGCAAAATAT 57.046 34.783 0.00 0.00 0.00 1.28
4328 4473 5.513376 CAATAGCAGCAAGATCGCAAAATA 58.487 37.500 0.00 0.00 0.00 1.40
4329 4474 4.357142 CAATAGCAGCAAGATCGCAAAAT 58.643 39.130 0.00 0.00 0.00 1.82
4330 4475 3.761657 CAATAGCAGCAAGATCGCAAAA 58.238 40.909 0.00 0.00 0.00 2.44
4331 4476 2.478370 GCAATAGCAGCAAGATCGCAAA 60.478 45.455 0.00 0.00 41.58 3.68
4332 4477 1.064505 GCAATAGCAGCAAGATCGCAA 59.935 47.619 0.00 0.00 41.58 4.85
4333 4478 0.659427 GCAATAGCAGCAAGATCGCA 59.341 50.000 0.00 0.00 41.58 5.10
4334 4479 0.942962 AGCAATAGCAGCAAGATCGC 59.057 50.000 0.00 0.00 45.49 4.58
4335 4480 2.207590 TGAGCAATAGCAGCAAGATCG 58.792 47.619 0.00 0.00 45.49 3.69
4336 4481 4.832590 ATTGAGCAATAGCAGCAAGATC 57.167 40.909 0.00 0.00 45.49 2.75
4337 4482 5.009410 GGTTATTGAGCAATAGCAGCAAGAT 59.991 40.000 15.66 0.00 45.49 2.40
4338 4483 4.336433 GGTTATTGAGCAATAGCAGCAAGA 59.664 41.667 15.66 0.00 45.49 3.02
4339 4484 4.337555 AGGTTATTGAGCAATAGCAGCAAG 59.662 41.667 15.66 0.00 45.49 4.01
4340 4485 4.272489 AGGTTATTGAGCAATAGCAGCAA 58.728 39.130 15.66 0.00 45.49 3.91
4341 4486 3.879295 GAGGTTATTGAGCAATAGCAGCA 59.121 43.478 15.66 0.00 45.49 4.41
4342 4487 3.251972 GGAGGTTATTGAGCAATAGCAGC 59.748 47.826 15.66 7.40 45.49 5.25
4343 4488 4.454678 TGGAGGTTATTGAGCAATAGCAG 58.545 43.478 15.66 0.00 45.49 4.24
4344 4489 4.502105 TGGAGGTTATTGAGCAATAGCA 57.498 40.909 15.66 0.00 45.49 3.49
4345 4490 4.457257 GGATGGAGGTTATTGAGCAATAGC 59.543 45.833 8.11 8.11 42.56 2.97
4346 4491 5.704515 CAGGATGGAGGTTATTGAGCAATAG 59.295 44.000 3.45 0.00 35.02 1.73
4347 4492 5.369404 TCAGGATGGAGGTTATTGAGCAATA 59.631 40.000 0.00 0.00 36.16 1.90
4348 4493 4.166725 TCAGGATGGAGGTTATTGAGCAAT 59.833 41.667 0.97 0.97 36.16 3.56
4349 4494 3.523157 TCAGGATGGAGGTTATTGAGCAA 59.477 43.478 0.00 0.00 36.16 3.91
4350 4495 3.114606 TCAGGATGGAGGTTATTGAGCA 58.885 45.455 0.00 0.00 36.16 4.26
4351 4496 3.845781 TCAGGATGGAGGTTATTGAGC 57.154 47.619 0.00 0.00 36.16 4.26
4352 4497 5.933617 TGATTCAGGATGGAGGTTATTGAG 58.066 41.667 0.00 0.00 36.16 3.02
4353 4498 5.974156 TGATTCAGGATGGAGGTTATTGA 57.026 39.130 0.00 0.00 36.16 2.57
4354 4499 6.540995 AGATGATTCAGGATGGAGGTTATTG 58.459 40.000 0.00 0.00 36.16 1.90
4355 4500 6.776887 AGATGATTCAGGATGGAGGTTATT 57.223 37.500 0.00 0.00 36.16 1.40
4356 4501 6.102321 ACAAGATGATTCAGGATGGAGGTTAT 59.898 38.462 0.00 0.00 36.16 1.89
4357 4502 5.429762 ACAAGATGATTCAGGATGGAGGTTA 59.570 40.000 0.00 0.00 36.16 2.85
4358 4503 4.229123 ACAAGATGATTCAGGATGGAGGTT 59.771 41.667 0.00 0.00 36.16 3.50
4359 4504 3.784763 ACAAGATGATTCAGGATGGAGGT 59.215 43.478 0.00 0.00 36.16 3.85
4360 4505 4.434545 ACAAGATGATTCAGGATGGAGG 57.565 45.455 0.00 0.00 36.16 4.30
4361 4506 6.120905 AGAAACAAGATGATTCAGGATGGAG 58.879 40.000 3.69 0.00 32.41 3.86
4362 4507 6.070951 AGAAACAAGATGATTCAGGATGGA 57.929 37.500 3.69 0.00 32.41 3.41
4363 4508 6.602406 AGAAGAAACAAGATGATTCAGGATGG 59.398 38.462 3.69 0.00 32.41 3.51
4364 4509 7.627298 AGAAGAAACAAGATGATTCAGGATG 57.373 36.000 3.69 0.00 32.41 3.51
4365 4510 7.122353 CCAAGAAGAAACAAGATGATTCAGGAT 59.878 37.037 3.69 0.00 32.41 3.24
4366 4511 6.432162 CCAAGAAGAAACAAGATGATTCAGGA 59.568 38.462 3.69 0.00 32.41 3.86
4367 4512 6.432162 TCCAAGAAGAAACAAGATGATTCAGG 59.568 38.462 3.69 0.00 32.41 3.86
4368 4513 7.444629 TCCAAGAAGAAACAAGATGATTCAG 57.555 36.000 3.69 0.00 32.41 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.