Multiple sequence alignment - TraesCS1A01G098800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G098800 chr1A 100.000 2891 0 0 1 2891 95050419 95047529 0.000000e+00 5339
1 TraesCS1A01G098800 chr1A 99.796 2452 5 0 440 2891 95527500 95529951 0.000000e+00 4501
2 TraesCS1A01G098800 chr1A 92.917 240 17 0 2248 2487 84798531 84798292 1.650000e-92 350
3 TraesCS1A01G098800 chr1A 85.253 217 22 6 1986 2198 95531718 95531928 6.270000e-52 215
4 TraesCS1A01G098800 chr1B 90.211 1798 129 21 439 2199 152836756 152838543 0.000000e+00 2302
5 TraesCS1A01G098800 chr1D 90.012 1672 99 31 529 2167 99547333 99545697 0.000000e+00 2100
6 TraesCS1A01G098800 chr1D 87.528 441 49 3 1 435 191864008 191863568 3.320000e-139 505
7 TraesCS1A01G098800 chr1D 85.455 440 58 3 7 441 127496122 127495684 1.220000e-123 453
8 TraesCS1A01G098800 chr1D 90.945 254 22 1 2240 2492 40915084 40914831 9.920000e-90 340
9 TraesCS1A01G098800 chr5D 88.182 440 47 3 1 435 421572426 421572865 1.190000e-143 520
10 TraesCS1A01G098800 chr5D 86.261 444 54 4 1 437 278143253 278143696 2.610000e-130 475
11 TraesCS1A01G098800 chr3A 88.295 393 44 2 2501 2891 25235061 25235453 1.210000e-128 470
12 TraesCS1A01G098800 chr7B 85.714 448 54 6 1 441 721097903 721098347 5.640000e-127 464
13 TraesCS1A01G098800 chr6D 85.235 447 53 5 7 441 27115951 27115506 5.680000e-122 448
14 TraesCS1A01G098800 chr6D 82.878 403 52 13 2503 2890 389300608 389301008 2.130000e-91 346
15 TraesCS1A01G098800 chr7D 84.305 446 64 3 1 441 10091804 10092248 5.720000e-117 431
16 TraesCS1A01G098800 chr7D 92.083 240 18 1 2249 2487 392619108 392619347 1.280000e-88 337
17 TraesCS1A01G098800 chr7D 81.266 395 59 10 2504 2884 254321392 254320999 3.620000e-79 305
18 TraesCS1A01G098800 chr5A 84.340 447 62 6 1 441 72225703 72225259 5.720000e-117 431
19 TraesCS1A01G098800 chr5A 84.354 441 64 1 1 436 72324555 72324115 7.400000e-116 427
20 TraesCS1A01G098800 chr2A 84.198 405 48 10 2501 2891 748077668 748077266 2.100000e-101 379
21 TraesCS1A01G098800 chr2A 84.000 400 50 6 2504 2891 685747938 685748335 3.520000e-99 372
22 TraesCS1A01G098800 chr2A 89.888 267 22 4 2245 2508 80279075 80278811 3.570000e-89 339
23 TraesCS1A01G098800 chr2A 82.262 389 55 10 2500 2876 758682313 758681927 9.990000e-85 324
24 TraesCS1A01G098800 chr6A 91.968 249 19 1 2240 2487 258132255 258132007 5.930000e-92 348
25 TraesCS1A01G098800 chr3B 92.562 242 17 1 2247 2487 507886119 507885878 2.130000e-91 346
26 TraesCS1A01G098800 chr4A 90.625 256 21 3 2233 2487 364000387 364000134 1.280000e-88 337
27 TraesCS1A01G098800 chr3D 89.811 265 24 3 2240 2503 279935409 279935147 1.280000e-88 337
28 TraesCS1A01G098800 chrUn 81.530 379 54 11 2504 2868 45879347 45878971 6.060000e-77 298
29 TraesCS1A01G098800 chr2B 88.841 233 24 2 2646 2876 476403131 476403363 4.710000e-73 285


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G098800 chr1A 95047529 95050419 2890 True 5339 5339 100.0000 1 2891 1 chr1A.!!$R2 2890
1 TraesCS1A01G098800 chr1A 95527500 95531928 4428 False 2358 4501 92.5245 440 2891 2 chr1A.!!$F1 2451
2 TraesCS1A01G098800 chr1B 152836756 152838543 1787 False 2302 2302 90.2110 439 2199 1 chr1B.!!$F1 1760
3 TraesCS1A01G098800 chr1D 99545697 99547333 1636 True 2100 2100 90.0120 529 2167 1 chr1D.!!$R2 1638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
241 242 0.026285 GCACACGGTTCGTCATATGC 59.974 55.0 0.0 0.0 38.32 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2604 2660 4.892934 ACTGGAACAAAGGCTCAATTACAA 59.107 37.5 0.0 0.0 38.7 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.612412 GCGTCCGGTGGTGGTGAA 62.612 66.667 0.00 0.00 0.00 3.18
42 43 2.345991 CGTCCGGTGGTGGTGAAT 59.654 61.111 0.00 0.00 0.00 2.57
43 44 2.032634 CGTCCGGTGGTGGTGAATG 61.033 63.158 0.00 0.00 0.00 2.67
44 45 1.072505 GTCCGGTGGTGGTGAATGT 59.927 57.895 0.00 0.00 0.00 2.71
45 46 0.536460 GTCCGGTGGTGGTGAATGTT 60.536 55.000 0.00 0.00 0.00 2.71
46 47 0.536233 TCCGGTGGTGGTGAATGTTG 60.536 55.000 0.00 0.00 0.00 3.33
47 48 1.523154 CCGGTGGTGGTGAATGTTGG 61.523 60.000 0.00 0.00 0.00 3.77
48 49 1.665442 GGTGGTGGTGAATGTTGGC 59.335 57.895 0.00 0.00 0.00 4.52
49 50 1.665442 GTGGTGGTGAATGTTGGCC 59.335 57.895 0.00 0.00 0.00 5.36
50 51 1.900981 TGGTGGTGAATGTTGGCCG 60.901 57.895 0.00 0.00 0.00 6.13
51 52 2.635443 GGTGGTGAATGTTGGCCGG 61.635 63.158 0.00 0.00 0.00 6.13
52 53 2.282816 TGGTGAATGTTGGCCGGG 60.283 61.111 2.18 0.00 0.00 5.73
53 54 2.034999 GGTGAATGTTGGCCGGGA 59.965 61.111 2.18 0.00 0.00 5.14
54 55 1.379843 GGTGAATGTTGGCCGGGAT 60.380 57.895 2.18 0.00 0.00 3.85
55 56 0.106918 GGTGAATGTTGGCCGGGATA 60.107 55.000 2.18 0.00 0.00 2.59
56 57 1.683629 GGTGAATGTTGGCCGGGATAA 60.684 52.381 2.18 0.00 0.00 1.75
57 58 2.096248 GTGAATGTTGGCCGGGATAAA 58.904 47.619 2.18 0.00 0.00 1.40
58 59 2.494073 GTGAATGTTGGCCGGGATAAAA 59.506 45.455 2.18 0.00 0.00 1.52
59 60 3.056465 GTGAATGTTGGCCGGGATAAAAA 60.056 43.478 2.18 0.00 0.00 1.94
60 61 3.056465 TGAATGTTGGCCGGGATAAAAAC 60.056 43.478 2.18 0.00 0.00 2.43
61 62 1.258676 TGTTGGCCGGGATAAAAACC 58.741 50.000 2.18 0.00 0.00 3.27
62 63 1.203075 TGTTGGCCGGGATAAAAACCT 60.203 47.619 2.18 0.00 0.00 3.50
63 64 1.203758 GTTGGCCGGGATAAAAACCTG 59.796 52.381 2.18 0.00 0.00 4.00
64 65 0.699399 TGGCCGGGATAAAAACCTGA 59.301 50.000 2.18 0.00 35.98 3.86
65 66 1.286553 TGGCCGGGATAAAAACCTGAT 59.713 47.619 2.18 0.00 35.98 2.90
66 67 1.954382 GGCCGGGATAAAAACCTGATC 59.046 52.381 2.18 0.00 35.98 2.92
67 68 2.422945 GGCCGGGATAAAAACCTGATCT 60.423 50.000 2.18 0.00 35.98 2.75
68 69 3.181448 GGCCGGGATAAAAACCTGATCTA 60.181 47.826 2.18 0.00 35.98 1.98
69 70 4.506802 GGCCGGGATAAAAACCTGATCTAT 60.507 45.833 2.18 0.00 35.98 1.98
70 71 4.695928 GCCGGGATAAAAACCTGATCTATC 59.304 45.833 2.18 0.00 35.98 2.08
71 72 5.513267 GCCGGGATAAAAACCTGATCTATCT 60.513 44.000 2.18 0.00 35.98 1.98
72 73 6.534634 CCGGGATAAAAACCTGATCTATCTT 58.465 40.000 0.00 0.00 35.98 2.40
73 74 6.428159 CCGGGATAAAAACCTGATCTATCTTG 59.572 42.308 0.00 0.00 35.98 3.02
74 75 6.428159 CGGGATAAAAACCTGATCTATCTTGG 59.572 42.308 0.00 0.00 35.98 3.61
75 76 7.518188 GGGATAAAAACCTGATCTATCTTGGA 58.482 38.462 0.00 0.00 0.00 3.53
76 77 8.166726 GGGATAAAAACCTGATCTATCTTGGAT 58.833 37.037 0.00 0.00 0.00 3.41
77 78 9.225436 GGATAAAAACCTGATCTATCTTGGATC 57.775 37.037 0.00 0.00 39.76 3.36
78 79 8.839310 ATAAAAACCTGATCTATCTTGGATCG 57.161 34.615 0.00 0.00 41.56 3.69
79 80 4.881019 AACCTGATCTATCTTGGATCGG 57.119 45.455 0.00 0.00 42.83 4.18
80 81 2.564947 ACCTGATCTATCTTGGATCGGC 59.435 50.000 6.93 0.00 42.23 5.54
81 82 2.416566 CCTGATCTATCTTGGATCGGCG 60.417 54.545 0.00 0.00 42.23 6.46
82 83 1.546029 TGATCTATCTTGGATCGGCGG 59.454 52.381 7.21 0.00 41.56 6.13
83 84 0.247736 ATCTATCTTGGATCGGCGGC 59.752 55.000 7.21 0.00 0.00 6.53
84 85 1.734477 CTATCTTGGATCGGCGGCG 60.734 63.158 27.15 27.15 0.00 6.46
85 86 3.220999 TATCTTGGATCGGCGGCGG 62.221 63.158 31.73 14.16 0.00 6.13
97 98 4.445545 CGGCGGCAAAGCTCGTTC 62.446 66.667 10.53 0.00 37.29 3.95
98 99 4.103103 GGCGGCAAAGCTCGTTCC 62.103 66.667 3.07 0.00 37.29 3.62
99 100 4.103103 GCGGCAAAGCTCGTTCCC 62.103 66.667 0.00 0.00 0.00 3.97
100 101 2.358737 CGGCAAAGCTCGTTCCCT 60.359 61.111 0.00 0.00 0.00 4.20
101 102 1.966451 CGGCAAAGCTCGTTCCCTT 60.966 57.895 0.00 0.00 0.00 3.95
102 103 1.876664 GGCAAAGCTCGTTCCCTTC 59.123 57.895 0.00 0.00 0.00 3.46
103 104 0.606673 GGCAAAGCTCGTTCCCTTCT 60.607 55.000 0.00 0.00 0.00 2.85
104 105 1.239347 GCAAAGCTCGTTCCCTTCTT 58.761 50.000 0.00 0.00 0.00 2.52
105 106 2.423577 GCAAAGCTCGTTCCCTTCTTA 58.576 47.619 0.00 0.00 0.00 2.10
106 107 2.812011 GCAAAGCTCGTTCCCTTCTTAA 59.188 45.455 0.00 0.00 0.00 1.85
107 108 3.252458 GCAAAGCTCGTTCCCTTCTTAAA 59.748 43.478 0.00 0.00 0.00 1.52
108 109 4.613850 GCAAAGCTCGTTCCCTTCTTAAAG 60.614 45.833 0.00 0.00 0.00 1.85
118 119 3.537793 CCTTCTTAAAGGTGTTGTCGC 57.462 47.619 0.00 0.00 46.10 5.19
119 120 2.096417 CCTTCTTAAAGGTGTTGTCGCG 60.096 50.000 0.00 0.00 46.10 5.87
120 121 1.504359 TCTTAAAGGTGTTGTCGCGG 58.496 50.000 6.13 0.00 0.00 6.46
121 122 1.202557 TCTTAAAGGTGTTGTCGCGGT 60.203 47.619 6.13 0.00 0.00 5.68
122 123 1.600485 CTTAAAGGTGTTGTCGCGGTT 59.400 47.619 6.13 0.00 0.00 4.44
123 124 1.219646 TAAAGGTGTTGTCGCGGTTC 58.780 50.000 6.13 0.00 0.00 3.62
124 125 0.463116 AAAGGTGTTGTCGCGGTTCT 60.463 50.000 6.13 0.00 0.00 3.01
125 126 0.463116 AAGGTGTTGTCGCGGTTCTT 60.463 50.000 6.13 0.00 0.00 2.52
126 127 0.390124 AGGTGTTGTCGCGGTTCTTA 59.610 50.000 6.13 0.00 0.00 2.10
127 128 1.001633 AGGTGTTGTCGCGGTTCTTAT 59.998 47.619 6.13 0.00 0.00 1.73
128 129 1.802365 GGTGTTGTCGCGGTTCTTATT 59.198 47.619 6.13 0.00 0.00 1.40
129 130 2.412325 GGTGTTGTCGCGGTTCTTATTG 60.412 50.000 6.13 0.00 0.00 1.90
130 131 1.195900 TGTTGTCGCGGTTCTTATTGC 59.804 47.619 6.13 0.00 0.00 3.56
131 132 0.800012 TTGTCGCGGTTCTTATTGCC 59.200 50.000 6.13 0.00 0.00 4.52
132 133 1.022451 TGTCGCGGTTCTTATTGCCC 61.022 55.000 6.13 0.00 0.00 5.36
133 134 1.812093 TCGCGGTTCTTATTGCCCG 60.812 57.895 6.13 0.00 43.22 6.13
134 135 2.104253 CGCGGTTCTTATTGCCCGT 61.104 57.895 0.00 0.00 42.36 5.28
135 136 1.719709 GCGGTTCTTATTGCCCGTC 59.280 57.895 0.00 0.00 42.36 4.79
136 137 2.003672 CGGTTCTTATTGCCCGTCG 58.996 57.895 0.00 0.00 35.78 5.12
137 138 1.719709 GGTTCTTATTGCCCGTCGC 59.280 57.895 0.00 0.00 38.31 5.19
138 139 1.347221 GTTCTTATTGCCCGTCGCG 59.653 57.895 0.00 0.00 42.08 5.87
139 140 1.079681 TTCTTATTGCCCGTCGCGT 60.080 52.632 5.77 0.00 42.08 6.01
140 141 0.671163 TTCTTATTGCCCGTCGCGTT 60.671 50.000 5.77 0.00 42.08 4.84
141 142 1.060308 CTTATTGCCCGTCGCGTTG 59.940 57.895 5.77 0.00 42.08 4.10
142 143 2.896428 CTTATTGCCCGTCGCGTTGC 62.896 60.000 5.77 5.46 42.08 4.17
143 144 3.943479 TATTGCCCGTCGCGTTGCT 62.943 57.895 5.77 0.00 42.08 3.91
150 151 3.414700 GTCGCGTTGCTCCAGGTG 61.415 66.667 5.77 0.00 0.00 4.00
151 152 3.611674 TCGCGTTGCTCCAGGTGA 61.612 61.111 5.77 0.00 0.00 4.02
152 153 2.664851 CGCGTTGCTCCAGGTGAA 60.665 61.111 0.00 0.00 0.00 3.18
153 154 2.250939 CGCGTTGCTCCAGGTGAAA 61.251 57.895 0.00 0.00 0.00 2.69
154 155 1.282875 GCGTTGCTCCAGGTGAAAC 59.717 57.895 2.48 2.48 0.00 2.78
155 156 1.166531 GCGTTGCTCCAGGTGAAACT 61.167 55.000 10.20 0.00 36.74 2.66
156 157 0.868406 CGTTGCTCCAGGTGAAACTC 59.132 55.000 10.20 0.00 36.74 3.01
157 158 1.541233 CGTTGCTCCAGGTGAAACTCT 60.541 52.381 10.20 0.00 36.74 3.24
158 159 1.876156 GTTGCTCCAGGTGAAACTCTG 59.124 52.381 5.22 0.00 36.74 3.35
159 160 1.423584 TGCTCCAGGTGAAACTCTGA 58.576 50.000 0.00 0.00 37.32 3.27
160 161 1.980765 TGCTCCAGGTGAAACTCTGAT 59.019 47.619 0.00 0.00 37.32 2.90
161 162 2.027745 TGCTCCAGGTGAAACTCTGATC 60.028 50.000 0.00 0.00 37.32 2.92
162 163 2.679349 GCTCCAGGTGAAACTCTGATCC 60.679 54.545 0.00 0.00 37.32 3.36
163 164 2.836981 CTCCAGGTGAAACTCTGATCCT 59.163 50.000 0.00 0.00 37.32 3.24
164 165 2.834549 TCCAGGTGAAACTCTGATCCTC 59.165 50.000 0.00 0.00 37.32 3.71
165 166 2.417924 CCAGGTGAAACTCTGATCCTCG 60.418 54.545 0.00 0.00 37.32 4.63
166 167 1.827969 AGGTGAAACTCTGATCCTCGG 59.172 52.381 0.00 0.00 36.74 4.63
167 168 1.134670 GGTGAAACTCTGATCCTCGGG 60.135 57.143 0.00 0.00 36.74 5.14
168 169 1.550976 GTGAAACTCTGATCCTCGGGT 59.449 52.381 0.00 0.00 0.00 5.28
169 170 1.825474 TGAAACTCTGATCCTCGGGTC 59.175 52.381 0.00 0.00 0.00 4.46
170 171 0.818296 AAACTCTGATCCTCGGGTCG 59.182 55.000 0.00 0.00 0.00 4.79
171 172 0.034380 AACTCTGATCCTCGGGTCGA 60.034 55.000 0.00 0.00 0.00 4.20
172 173 0.748729 ACTCTGATCCTCGGGTCGAC 60.749 60.000 7.13 7.13 0.00 4.20
173 174 1.448922 CTCTGATCCTCGGGTCGACC 61.449 65.000 27.04 27.04 0.00 4.79
187 188 4.008933 GACCGGTGGCAGCACTCT 62.009 66.667 14.63 0.00 0.00 3.24
188 189 4.320456 ACCGGTGGCAGCACTCTG 62.320 66.667 17.80 0.00 43.16 3.35
190 191 4.320456 CGGTGGCAGCACTCTGGT 62.320 66.667 17.80 0.00 40.65 4.00
192 193 2.111878 GTGGCAGCACTCTGGTGT 59.888 61.111 0.00 0.00 46.67 4.16
194 195 2.740055 GGCAGCACTCTGGTGTCG 60.740 66.667 0.00 0.00 46.67 4.35
195 196 2.029666 GCAGCACTCTGGTGTCGT 59.970 61.111 3.57 0.00 46.67 4.34
196 197 1.289066 GCAGCACTCTGGTGTCGTA 59.711 57.895 3.57 0.00 46.67 3.43
197 198 0.319555 GCAGCACTCTGGTGTCGTAA 60.320 55.000 3.57 0.00 46.67 3.18
198 199 1.419374 CAGCACTCTGGTGTCGTAAC 58.581 55.000 0.00 0.00 44.65 2.50
199 200 0.317479 AGCACTCTGGTGTCGTAACC 59.683 55.000 2.77 2.77 44.65 2.85
200 201 0.317479 GCACTCTGGTGTCGTAACCT 59.683 55.000 10.01 0.00 44.65 3.50
201 202 1.270147 GCACTCTGGTGTCGTAACCTT 60.270 52.381 10.01 0.00 44.65 3.50
202 203 2.805657 GCACTCTGGTGTCGTAACCTTT 60.806 50.000 10.01 0.00 44.65 3.11
203 204 3.057734 CACTCTGGTGTCGTAACCTTTC 58.942 50.000 10.01 0.00 41.16 2.62
204 205 2.963782 ACTCTGGTGTCGTAACCTTTCT 59.036 45.455 10.01 0.00 41.16 2.52
205 206 3.243771 ACTCTGGTGTCGTAACCTTTCTG 60.244 47.826 10.01 1.08 41.16 3.02
206 207 2.960384 TCTGGTGTCGTAACCTTTCTGA 59.040 45.455 10.01 0.59 41.16 3.27
207 208 3.385433 TCTGGTGTCGTAACCTTTCTGAA 59.615 43.478 10.01 0.00 41.16 3.02
208 209 3.724374 TGGTGTCGTAACCTTTCTGAAG 58.276 45.455 10.01 0.00 41.16 3.02
215 216 4.404691 CCTTTCTGAAGGCGCCTT 57.595 55.556 40.90 40.90 45.59 4.35
223 224 2.090693 GAAGGCGCCTTCTTGTAGC 58.909 57.895 46.69 28.62 46.38 3.58
224 225 0.673644 GAAGGCGCCTTCTTGTAGCA 60.674 55.000 46.69 0.00 46.38 3.49
225 226 0.955919 AAGGCGCCTTCTTGTAGCAC 60.956 55.000 35.84 0.00 0.00 4.40
226 227 1.671054 GGCGCCTTCTTGTAGCACA 60.671 57.895 22.15 0.00 0.00 4.57
227 228 1.497722 GCGCCTTCTTGTAGCACAC 59.502 57.895 0.00 0.00 0.00 3.82
228 229 1.781555 CGCCTTCTTGTAGCACACG 59.218 57.895 0.00 0.00 0.00 4.49
229 230 1.626654 CGCCTTCTTGTAGCACACGG 61.627 60.000 0.00 0.00 0.00 4.94
230 231 0.602905 GCCTTCTTGTAGCACACGGT 60.603 55.000 0.00 0.00 0.00 4.83
231 232 1.878953 CCTTCTTGTAGCACACGGTT 58.121 50.000 0.00 0.00 0.00 4.44
232 233 1.798813 CCTTCTTGTAGCACACGGTTC 59.201 52.381 0.00 0.00 0.00 3.62
233 234 1.455786 CTTCTTGTAGCACACGGTTCG 59.544 52.381 0.00 0.00 0.00 3.95
234 235 0.386476 TCTTGTAGCACACGGTTCGT 59.614 50.000 0.00 0.00 42.36 3.85
235 236 0.782384 CTTGTAGCACACGGTTCGTC 59.218 55.000 0.00 0.00 38.32 4.20
236 237 0.102663 TTGTAGCACACGGTTCGTCA 59.897 50.000 0.00 0.00 38.32 4.35
237 238 0.315886 TGTAGCACACGGTTCGTCAT 59.684 50.000 0.00 0.00 38.32 3.06
238 239 1.540707 TGTAGCACACGGTTCGTCATA 59.459 47.619 0.00 0.00 38.32 2.15
239 240 2.164827 TGTAGCACACGGTTCGTCATAT 59.835 45.455 0.00 0.00 38.32 1.78
240 241 1.640428 AGCACACGGTTCGTCATATG 58.360 50.000 0.00 0.00 38.32 1.78
241 242 0.026285 GCACACGGTTCGTCATATGC 59.974 55.000 0.00 0.00 38.32 3.14
242 243 0.297525 CACACGGTTCGTCATATGCG 59.702 55.000 11.69 11.69 38.32 4.73
243 244 0.804544 ACACGGTTCGTCATATGCGG 60.805 55.000 16.01 3.72 38.32 5.69
244 245 1.881252 ACGGTTCGTCATATGCGGC 60.881 57.895 16.01 0.00 33.69 6.53
245 246 1.591594 CGGTTCGTCATATGCGGCT 60.592 57.895 16.01 0.00 0.00 5.52
246 247 1.151777 CGGTTCGTCATATGCGGCTT 61.152 55.000 16.01 0.00 0.00 4.35
247 248 0.582005 GGTTCGTCATATGCGGCTTC 59.418 55.000 16.01 7.28 0.00 3.86
248 249 1.286501 GTTCGTCATATGCGGCTTCA 58.713 50.000 16.01 0.00 0.00 3.02
249 250 1.867233 GTTCGTCATATGCGGCTTCAT 59.133 47.619 16.01 0.00 0.00 2.57
250 251 1.783284 TCGTCATATGCGGCTTCATC 58.217 50.000 16.01 0.00 0.00 2.92
251 252 1.341209 TCGTCATATGCGGCTTCATCT 59.659 47.619 16.01 0.00 0.00 2.90
252 253 1.723542 CGTCATATGCGGCTTCATCTC 59.276 52.381 0.00 0.00 0.00 2.75
253 254 2.608998 CGTCATATGCGGCTTCATCTCT 60.609 50.000 0.00 0.00 0.00 3.10
254 255 3.397482 GTCATATGCGGCTTCATCTCTT 58.603 45.455 0.00 0.00 0.00 2.85
255 256 3.431572 GTCATATGCGGCTTCATCTCTTC 59.568 47.826 0.00 0.00 0.00 2.87
256 257 3.070015 TCATATGCGGCTTCATCTCTTCA 59.930 43.478 0.00 0.00 0.00 3.02
257 258 2.634815 ATGCGGCTTCATCTCTTCAT 57.365 45.000 0.00 0.00 0.00 2.57
258 259 1.660167 TGCGGCTTCATCTCTTCATG 58.340 50.000 0.00 0.00 0.00 3.07
259 260 1.207811 TGCGGCTTCATCTCTTCATGA 59.792 47.619 0.00 0.00 0.00 3.07
260 261 2.158856 TGCGGCTTCATCTCTTCATGAT 60.159 45.455 0.00 0.00 32.69 2.45
261 262 2.223611 GCGGCTTCATCTCTTCATGATG 59.776 50.000 0.00 0.00 41.75 3.07
262 263 3.725490 CGGCTTCATCTCTTCATGATGA 58.275 45.455 10.59 10.59 45.69 2.92
263 264 3.493877 CGGCTTCATCTCTTCATGATGAC 59.506 47.826 7.19 0.00 46.60 3.06
264 265 4.449131 GGCTTCATCTCTTCATGATGACA 58.551 43.478 7.19 0.00 46.60 3.58
265 266 5.064558 GGCTTCATCTCTTCATGATGACAT 58.935 41.667 7.19 0.75 46.60 3.06
274 275 1.660167 CATGATGACATGCTCACGGT 58.340 50.000 0.00 0.00 45.51 4.83
275 276 2.011947 CATGATGACATGCTCACGGTT 58.988 47.619 0.00 0.00 45.51 4.44
276 277 1.441738 TGATGACATGCTCACGGTTG 58.558 50.000 0.00 0.00 0.00 3.77
277 278 1.001860 TGATGACATGCTCACGGTTGA 59.998 47.619 0.00 0.00 0.00 3.18
278 279 6.252566 CATGATGACATGCTCACGGTTGAG 62.253 50.000 0.00 0.00 45.51 3.02
284 285 2.663196 CTCACGGTTGAGGACCCC 59.337 66.667 0.00 0.00 46.35 4.95
285 286 3.296709 CTCACGGTTGAGGACCCCG 62.297 68.421 5.46 5.46 46.35 5.73
286 287 4.388499 CACGGTTGAGGACCCCGG 62.388 72.222 11.05 0.00 46.35 5.73
287 288 4.948080 ACGGTTGAGGACCCCGGT 62.948 66.667 11.05 0.00 46.35 5.28
288 289 3.633116 CGGTTGAGGACCCCGGTT 61.633 66.667 0.00 0.00 46.35 4.44
289 290 2.033602 GGTTGAGGACCCCGGTTG 59.966 66.667 0.00 0.00 43.06 3.77
290 291 2.671963 GTTGAGGACCCCGGTTGC 60.672 66.667 0.00 0.00 0.00 4.17
291 292 2.852075 TTGAGGACCCCGGTTGCT 60.852 61.111 0.00 0.00 0.00 3.91
292 293 2.890766 TTGAGGACCCCGGTTGCTC 61.891 63.158 13.20 13.20 0.00 4.26
293 294 3.003763 GAGGACCCCGGTTGCTCT 61.004 66.667 12.91 0.00 0.00 4.09
294 295 2.529389 AGGACCCCGGTTGCTCTT 60.529 61.111 0.00 0.00 0.00 2.85
295 296 2.359975 GGACCCCGGTTGCTCTTG 60.360 66.667 0.00 0.00 0.00 3.02
296 297 2.430367 GACCCCGGTTGCTCTTGT 59.570 61.111 0.00 0.00 0.00 3.16
297 298 1.675219 GACCCCGGTTGCTCTTGTA 59.325 57.895 0.00 0.00 0.00 2.41
298 299 0.391263 GACCCCGGTTGCTCTTGTAG 60.391 60.000 0.00 0.00 0.00 2.74
299 300 1.125711 ACCCCGGTTGCTCTTGTAGT 61.126 55.000 0.00 0.00 0.00 2.73
300 301 0.899720 CCCCGGTTGCTCTTGTAGTA 59.100 55.000 0.00 0.00 0.00 1.82
301 302 1.405121 CCCCGGTTGCTCTTGTAGTAC 60.405 57.143 0.00 0.00 0.00 2.73
302 303 1.549170 CCCGGTTGCTCTTGTAGTACT 59.451 52.381 0.00 0.00 0.00 2.73
303 304 2.756760 CCCGGTTGCTCTTGTAGTACTA 59.243 50.000 0.00 0.00 0.00 1.82
304 305 3.181489 CCCGGTTGCTCTTGTAGTACTAG 60.181 52.174 1.87 5.49 0.00 2.57
305 306 3.181489 CCGGTTGCTCTTGTAGTACTAGG 60.181 52.174 1.87 4.47 0.00 3.02
306 307 3.181489 CGGTTGCTCTTGTAGTACTAGGG 60.181 52.174 1.87 9.26 0.00 3.53
307 308 3.132467 GGTTGCTCTTGTAGTACTAGGGG 59.868 52.174 12.68 7.29 0.00 4.79
308 309 3.752359 TGCTCTTGTAGTACTAGGGGT 57.248 47.619 12.68 0.00 0.00 4.95
309 310 4.868172 TGCTCTTGTAGTACTAGGGGTA 57.132 45.455 12.68 3.88 0.00 3.69
310 311 5.197224 TGCTCTTGTAGTACTAGGGGTAA 57.803 43.478 12.68 0.00 31.56 2.85
311 312 5.774179 TGCTCTTGTAGTACTAGGGGTAAT 58.226 41.667 12.68 0.00 33.13 1.89
312 313 5.597182 TGCTCTTGTAGTACTAGGGGTAATG 59.403 44.000 12.68 0.00 30.94 1.90
313 314 5.597594 GCTCTTGTAGTACTAGGGGTAATGT 59.402 44.000 12.68 0.00 30.94 2.71
314 315 6.097981 GCTCTTGTAGTACTAGGGGTAATGTT 59.902 42.308 12.68 0.00 30.94 2.71
315 316 7.286316 GCTCTTGTAGTACTAGGGGTAATGTTA 59.714 40.741 12.68 0.00 30.94 2.41
316 317 8.525290 TCTTGTAGTACTAGGGGTAATGTTAC 57.475 38.462 1.87 0.00 30.94 2.50
317 318 8.339247 TCTTGTAGTACTAGGGGTAATGTTACT 58.661 37.037 1.87 0.00 34.16 2.24
318 319 7.886629 TGTAGTACTAGGGGTAATGTTACTG 57.113 40.000 1.87 0.00 34.16 2.74
319 320 5.866159 AGTACTAGGGGTAATGTTACTGC 57.134 43.478 0.00 0.00 34.16 4.40
320 321 3.814005 ACTAGGGGTAATGTTACTGCG 57.186 47.619 0.00 0.00 34.16 5.18
321 322 2.159000 ACTAGGGGTAATGTTACTGCGC 60.159 50.000 0.00 0.00 34.16 6.09
322 323 0.909623 AGGGGTAATGTTACTGCGCT 59.090 50.000 9.73 0.00 34.16 5.92
323 324 1.134491 AGGGGTAATGTTACTGCGCTC 60.134 52.381 9.73 0.00 34.16 5.03
324 325 1.406341 GGGGTAATGTTACTGCGCTCA 60.406 52.381 9.73 0.44 34.16 4.26
325 326 2.352388 GGGTAATGTTACTGCGCTCAA 58.648 47.619 9.73 0.00 34.16 3.02
326 327 2.095372 GGGTAATGTTACTGCGCTCAAC 59.905 50.000 9.73 10.51 34.16 3.18
327 328 2.222729 GGTAATGTTACTGCGCTCAACG 60.223 50.000 9.73 0.00 38.09 4.10
328 329 1.508632 AATGTTACTGCGCTCAACGT 58.491 45.000 9.73 8.52 46.11 3.99
329 330 1.068474 ATGTTACTGCGCTCAACGTC 58.932 50.000 9.73 0.00 46.11 4.34
330 331 0.031585 TGTTACTGCGCTCAACGTCT 59.968 50.000 9.73 0.00 46.11 4.18
331 332 1.137513 GTTACTGCGCTCAACGTCTT 58.862 50.000 9.73 0.00 46.11 3.01
332 333 1.525619 GTTACTGCGCTCAACGTCTTT 59.474 47.619 9.73 0.00 46.11 2.52
333 334 1.136690 TACTGCGCTCAACGTCTTTG 58.863 50.000 9.73 0.00 46.11 2.77
334 335 0.810031 ACTGCGCTCAACGTCTTTGT 60.810 50.000 9.73 0.00 46.11 2.83
335 336 1.136690 CTGCGCTCAACGTCTTTGTA 58.863 50.000 9.73 0.00 46.11 2.41
336 337 1.726791 CTGCGCTCAACGTCTTTGTAT 59.273 47.619 9.73 0.00 46.11 2.29
337 338 1.724623 TGCGCTCAACGTCTTTGTATC 59.275 47.619 9.73 0.00 46.11 2.24
338 339 1.060698 GCGCTCAACGTCTTTGTATCC 59.939 52.381 0.00 0.00 46.11 2.59
339 340 2.607187 CGCTCAACGTCTTTGTATCCT 58.393 47.619 0.00 0.00 36.49 3.24
340 341 2.345641 CGCTCAACGTCTTTGTATCCTG 59.654 50.000 0.00 0.00 36.49 3.86
341 342 3.326747 GCTCAACGTCTTTGTATCCTGT 58.673 45.455 0.00 0.00 36.49 4.00
342 343 3.368236 GCTCAACGTCTTTGTATCCTGTC 59.632 47.826 0.00 0.00 36.49 3.51
343 344 4.810790 CTCAACGTCTTTGTATCCTGTCT 58.189 43.478 0.00 0.00 36.49 3.41
344 345 5.209818 TCAACGTCTTTGTATCCTGTCTT 57.790 39.130 0.00 0.00 36.49 3.01
345 346 4.988540 TCAACGTCTTTGTATCCTGTCTTG 59.011 41.667 0.00 0.00 36.49 3.02
346 347 3.926616 ACGTCTTTGTATCCTGTCTTGG 58.073 45.455 0.00 0.00 0.00 3.61
347 348 3.576982 ACGTCTTTGTATCCTGTCTTGGA 59.423 43.478 0.00 0.00 40.82 3.53
348 349 3.927142 CGTCTTTGTATCCTGTCTTGGAC 59.073 47.826 0.00 0.00 39.17 4.02
349 350 3.927142 GTCTTTGTATCCTGTCTTGGACG 59.073 47.826 0.00 0.00 39.17 4.79
350 351 3.576982 TCTTTGTATCCTGTCTTGGACGT 59.423 43.478 0.00 0.00 39.17 4.34
351 352 3.313012 TTGTATCCTGTCTTGGACGTG 57.687 47.619 0.00 0.00 39.17 4.49
352 353 2.244695 TGTATCCTGTCTTGGACGTGT 58.755 47.619 0.00 0.00 39.17 4.49
353 354 2.029380 TGTATCCTGTCTTGGACGTGTG 60.029 50.000 0.00 0.00 39.17 3.82
354 355 0.320771 ATCCTGTCTTGGACGTGTGC 60.321 55.000 0.00 0.00 39.17 4.57
355 356 2.310233 CCTGTCTTGGACGTGTGCG 61.310 63.158 0.00 0.00 44.93 5.34
367 368 2.143621 CGTGTGCGTATGTTGTGATG 57.856 50.000 0.00 0.00 0.00 3.07
368 369 1.201910 CGTGTGCGTATGTTGTGATGG 60.202 52.381 0.00 0.00 0.00 3.51
369 370 2.073056 GTGTGCGTATGTTGTGATGGA 58.927 47.619 0.00 0.00 0.00 3.41
370 371 2.094258 GTGTGCGTATGTTGTGATGGAG 59.906 50.000 0.00 0.00 0.00 3.86
371 372 2.289382 TGTGCGTATGTTGTGATGGAGT 60.289 45.455 0.00 0.00 0.00 3.85
372 373 2.094258 GTGCGTATGTTGTGATGGAGTG 59.906 50.000 0.00 0.00 0.00 3.51
373 374 2.028567 TGCGTATGTTGTGATGGAGTGA 60.029 45.455 0.00 0.00 0.00 3.41
374 375 2.604914 GCGTATGTTGTGATGGAGTGAG 59.395 50.000 0.00 0.00 0.00 3.51
375 376 3.849911 CGTATGTTGTGATGGAGTGAGT 58.150 45.455 0.00 0.00 0.00 3.41
376 377 4.245660 CGTATGTTGTGATGGAGTGAGTT 58.754 43.478 0.00 0.00 0.00 3.01
377 378 4.690748 CGTATGTTGTGATGGAGTGAGTTT 59.309 41.667 0.00 0.00 0.00 2.66
378 379 5.389830 CGTATGTTGTGATGGAGTGAGTTTG 60.390 44.000 0.00 0.00 0.00 2.93
379 380 3.884895 TGTTGTGATGGAGTGAGTTTGT 58.115 40.909 0.00 0.00 0.00 2.83
380 381 5.029807 TGTTGTGATGGAGTGAGTTTGTA 57.970 39.130 0.00 0.00 0.00 2.41
381 382 5.620206 TGTTGTGATGGAGTGAGTTTGTAT 58.380 37.500 0.00 0.00 0.00 2.29
382 383 6.061441 TGTTGTGATGGAGTGAGTTTGTATT 58.939 36.000 0.00 0.00 0.00 1.89
383 384 6.545666 TGTTGTGATGGAGTGAGTTTGTATTT 59.454 34.615 0.00 0.00 0.00 1.40
384 385 7.717436 TGTTGTGATGGAGTGAGTTTGTATTTA 59.283 33.333 0.00 0.00 0.00 1.40
385 386 8.564574 GTTGTGATGGAGTGAGTTTGTATTTAA 58.435 33.333 0.00 0.00 0.00 1.52
386 387 8.684386 TGTGATGGAGTGAGTTTGTATTTAAA 57.316 30.769 0.00 0.00 0.00 1.52
387 388 9.295825 TGTGATGGAGTGAGTTTGTATTTAAAT 57.704 29.630 5.89 5.89 0.00 1.40
403 404 9.891828 TGTATTTAAATTATGATTGATCGGTGC 57.108 29.630 5.91 0.00 0.00 5.01
419 420 9.478768 TTGATCGGTGCTTTATATATAAAACGA 57.521 29.630 22.22 22.22 32.39 3.85
420 421 9.135843 TGATCGGTGCTTTATATATAAAACGAG 57.864 33.333 23.19 13.99 32.88 4.18
421 422 7.878477 TCGGTGCTTTATATATAAAACGAGG 57.122 36.000 16.69 7.83 32.39 4.63
422 423 6.366877 TCGGTGCTTTATATATAAAACGAGGC 59.633 38.462 16.69 15.63 32.39 4.70
423 424 6.531439 GGTGCTTTATATATAAAACGAGGCG 58.469 40.000 16.69 6.67 32.39 5.52
424 425 6.366877 GGTGCTTTATATATAAAACGAGGCGA 59.633 38.462 16.69 6.81 32.39 5.54
425 426 7.095523 GGTGCTTTATATATAAAACGAGGCGAA 60.096 37.037 16.69 2.32 32.39 4.70
426 427 8.277713 GTGCTTTATATATAAAACGAGGCGAAA 58.722 33.333 16.69 1.77 32.39 3.46
427 428 8.492748 TGCTTTATATATAAAACGAGGCGAAAG 58.507 33.333 16.69 5.83 32.39 2.62
428 429 7.477733 GCTTTATATATAAAACGAGGCGAAAGC 59.522 37.037 16.69 10.91 43.08 3.51
465 466 2.725641 CGTCCACTGACCGTCACA 59.274 61.111 0.00 0.00 38.32 3.58
2637 2693 3.305335 CCTTTGTTCCAGTTTTCCCATCG 60.305 47.826 0.00 0.00 0.00 3.84
2873 2929 6.441274 ACACTGACTTTGTTGCAATAATGAG 58.559 36.000 22.84 14.87 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.894547 ATTCACCACCACCGGACGC 62.895 63.158 9.46 0.00 0.00 5.19
25 26 2.032634 CATTCACCACCACCGGACG 61.033 63.158 9.46 0.00 0.00 4.79
26 27 0.536460 AACATTCACCACCACCGGAC 60.536 55.000 9.46 0.00 0.00 4.79
27 28 0.536233 CAACATTCACCACCACCGGA 60.536 55.000 9.46 0.00 0.00 5.14
28 29 1.523154 CCAACATTCACCACCACCGG 61.523 60.000 0.00 0.00 0.00 5.28
29 30 1.956043 CCAACATTCACCACCACCG 59.044 57.895 0.00 0.00 0.00 4.94
30 31 1.665442 GCCAACATTCACCACCACC 59.335 57.895 0.00 0.00 0.00 4.61
31 32 1.665442 GGCCAACATTCACCACCAC 59.335 57.895 0.00 0.00 0.00 4.16
32 33 1.900981 CGGCCAACATTCACCACCA 60.901 57.895 2.24 0.00 0.00 4.17
33 34 2.635443 CCGGCCAACATTCACCACC 61.635 63.158 2.24 0.00 0.00 4.61
34 35 2.635443 CCCGGCCAACATTCACCAC 61.635 63.158 2.24 0.00 0.00 4.16
35 36 2.148723 ATCCCGGCCAACATTCACCA 62.149 55.000 2.24 0.00 0.00 4.17
36 37 0.106918 TATCCCGGCCAACATTCACC 60.107 55.000 2.24 0.00 0.00 4.02
37 38 1.757682 TTATCCCGGCCAACATTCAC 58.242 50.000 2.24 0.00 0.00 3.18
38 39 2.516227 TTTATCCCGGCCAACATTCA 57.484 45.000 2.24 0.00 0.00 2.57
39 40 3.517602 GTTTTTATCCCGGCCAACATTC 58.482 45.455 2.24 0.00 0.00 2.67
40 41 2.235155 GGTTTTTATCCCGGCCAACATT 59.765 45.455 2.24 0.00 0.00 2.71
41 42 1.828595 GGTTTTTATCCCGGCCAACAT 59.171 47.619 2.24 0.00 0.00 2.71
42 43 1.203075 AGGTTTTTATCCCGGCCAACA 60.203 47.619 2.24 0.00 0.00 3.33
43 44 1.203758 CAGGTTTTTATCCCGGCCAAC 59.796 52.381 2.24 0.00 0.00 3.77
44 45 1.075698 TCAGGTTTTTATCCCGGCCAA 59.924 47.619 2.24 0.00 0.00 4.52
45 46 0.699399 TCAGGTTTTTATCCCGGCCA 59.301 50.000 2.24 0.00 0.00 5.36
46 47 1.954382 GATCAGGTTTTTATCCCGGCC 59.046 52.381 0.00 0.00 0.00 6.13
47 48 2.932261 AGATCAGGTTTTTATCCCGGC 58.068 47.619 0.00 0.00 0.00 6.13
48 49 6.115448 AGATAGATCAGGTTTTTATCCCGG 57.885 41.667 0.00 0.00 0.00 5.73
49 50 6.428159 CCAAGATAGATCAGGTTTTTATCCCG 59.572 42.308 0.00 0.00 0.00 5.14
50 51 7.518188 TCCAAGATAGATCAGGTTTTTATCCC 58.482 38.462 0.00 0.00 0.00 3.85
51 52 9.225436 GATCCAAGATAGATCAGGTTTTTATCC 57.775 37.037 0.00 0.00 39.97 2.59
52 53 8.930760 CGATCCAAGATAGATCAGGTTTTTATC 58.069 37.037 0.00 0.00 40.17 1.75
53 54 7.880195 CCGATCCAAGATAGATCAGGTTTTTAT 59.120 37.037 0.00 0.00 40.17 1.40
54 55 7.217200 CCGATCCAAGATAGATCAGGTTTTTA 58.783 38.462 0.00 0.00 40.17 1.52
55 56 6.058183 CCGATCCAAGATAGATCAGGTTTTT 58.942 40.000 0.00 0.00 40.17 1.94
56 57 5.615289 CCGATCCAAGATAGATCAGGTTTT 58.385 41.667 0.00 0.00 40.17 2.43
57 58 4.503991 GCCGATCCAAGATAGATCAGGTTT 60.504 45.833 0.00 0.00 40.17 3.27
58 59 3.007398 GCCGATCCAAGATAGATCAGGTT 59.993 47.826 0.00 0.00 40.17 3.50
59 60 2.564947 GCCGATCCAAGATAGATCAGGT 59.435 50.000 0.00 0.00 40.17 4.00
60 61 2.416566 CGCCGATCCAAGATAGATCAGG 60.417 54.545 0.00 0.00 40.17 3.86
61 62 2.416566 CCGCCGATCCAAGATAGATCAG 60.417 54.545 0.00 0.00 40.17 2.90
62 63 1.546029 CCGCCGATCCAAGATAGATCA 59.454 52.381 0.00 0.00 40.17 2.92
63 64 1.737363 GCCGCCGATCCAAGATAGATC 60.737 57.143 0.00 0.00 37.39 2.75
64 65 0.247736 GCCGCCGATCCAAGATAGAT 59.752 55.000 0.00 0.00 0.00 1.98
65 66 1.666011 GCCGCCGATCCAAGATAGA 59.334 57.895 0.00 0.00 0.00 1.98
66 67 1.734477 CGCCGCCGATCCAAGATAG 60.734 63.158 0.00 0.00 36.29 2.08
67 68 2.338620 CGCCGCCGATCCAAGATA 59.661 61.111 0.00 0.00 36.29 1.98
68 69 4.609018 CCGCCGCCGATCCAAGAT 62.609 66.667 0.00 0.00 36.29 2.40
80 81 4.445545 GAACGAGCTTTGCCGCCG 62.446 66.667 0.00 0.00 0.00 6.46
81 82 4.103103 GGAACGAGCTTTGCCGCC 62.103 66.667 0.00 0.00 0.00 6.13
82 83 4.103103 GGGAACGAGCTTTGCCGC 62.103 66.667 0.00 0.00 0.00 6.53
83 84 1.912371 GAAGGGAACGAGCTTTGCCG 61.912 60.000 3.32 0.00 41.71 5.69
84 85 0.606673 AGAAGGGAACGAGCTTTGCC 60.607 55.000 0.56 0.56 37.24 4.52
85 86 1.239347 AAGAAGGGAACGAGCTTTGC 58.761 50.000 0.00 0.00 0.00 3.68
86 87 5.035784 CTTTAAGAAGGGAACGAGCTTTG 57.964 43.478 0.00 0.00 0.00 2.77
99 100 2.096417 CCGCGACAACACCTTTAAGAAG 60.096 50.000 8.23 0.00 0.00 2.85
100 101 1.868498 CCGCGACAACACCTTTAAGAA 59.132 47.619 8.23 0.00 0.00 2.52
101 102 1.202557 ACCGCGACAACACCTTTAAGA 60.203 47.619 8.23 0.00 0.00 2.10
102 103 1.223187 ACCGCGACAACACCTTTAAG 58.777 50.000 8.23 0.00 0.00 1.85
103 104 1.598601 GAACCGCGACAACACCTTTAA 59.401 47.619 8.23 0.00 0.00 1.52
104 105 1.202557 AGAACCGCGACAACACCTTTA 60.203 47.619 8.23 0.00 0.00 1.85
105 106 0.463116 AGAACCGCGACAACACCTTT 60.463 50.000 8.23 0.00 0.00 3.11
106 107 0.463116 AAGAACCGCGACAACACCTT 60.463 50.000 8.23 0.00 0.00 3.50
107 108 0.390124 TAAGAACCGCGACAACACCT 59.610 50.000 8.23 0.00 0.00 4.00
108 109 1.435577 ATAAGAACCGCGACAACACC 58.564 50.000 8.23 0.00 0.00 4.16
109 110 2.834689 CAATAAGAACCGCGACAACAC 58.165 47.619 8.23 0.00 0.00 3.32
110 111 1.195900 GCAATAAGAACCGCGACAACA 59.804 47.619 8.23 0.00 0.00 3.33
111 112 1.465187 GGCAATAAGAACCGCGACAAC 60.465 52.381 8.23 0.00 0.00 3.32
112 113 0.800012 GGCAATAAGAACCGCGACAA 59.200 50.000 8.23 0.00 0.00 3.18
113 114 1.022451 GGGCAATAAGAACCGCGACA 61.022 55.000 8.23 0.00 0.00 4.35
114 115 1.719709 GGGCAATAAGAACCGCGAC 59.280 57.895 8.23 0.00 0.00 5.19
115 116 1.812093 CGGGCAATAAGAACCGCGA 60.812 57.895 8.23 0.00 39.85 5.87
116 117 2.707039 CGGGCAATAAGAACCGCG 59.293 61.111 0.00 0.00 39.85 6.46
119 120 1.719709 GCGACGGGCAATAAGAACC 59.280 57.895 0.00 0.00 42.87 3.62
120 121 1.347221 CGCGACGGGCAATAAGAAC 59.653 57.895 0.00 0.00 43.84 3.01
121 122 0.671163 AACGCGACGGGCAATAAGAA 60.671 50.000 15.93 0.00 43.84 2.52
122 123 1.079681 AACGCGACGGGCAATAAGA 60.080 52.632 15.93 0.00 43.84 2.10
123 124 1.060308 CAACGCGACGGGCAATAAG 59.940 57.895 15.93 0.00 43.84 1.73
124 125 3.029564 GCAACGCGACGGGCAATAA 62.030 57.895 15.93 0.00 43.84 1.40
125 126 3.492545 GCAACGCGACGGGCAATA 61.493 61.111 15.93 0.00 43.84 1.90
133 134 3.414700 CACCTGGAGCAACGCGAC 61.415 66.667 15.93 0.83 0.00 5.19
134 135 2.652382 TTTCACCTGGAGCAACGCGA 62.652 55.000 15.93 0.00 0.00 5.87
135 136 2.250939 TTTCACCTGGAGCAACGCG 61.251 57.895 3.53 3.53 0.00 6.01
136 137 1.166531 AGTTTCACCTGGAGCAACGC 61.167 55.000 0.00 0.00 0.00 4.84
137 138 0.868406 GAGTTTCACCTGGAGCAACG 59.132 55.000 0.00 0.00 0.00 4.10
138 139 1.876156 CAGAGTTTCACCTGGAGCAAC 59.124 52.381 0.00 0.00 0.00 4.17
139 140 1.768275 TCAGAGTTTCACCTGGAGCAA 59.232 47.619 0.00 0.00 0.00 3.91
140 141 1.423584 TCAGAGTTTCACCTGGAGCA 58.576 50.000 0.00 0.00 0.00 4.26
141 142 2.626840 GATCAGAGTTTCACCTGGAGC 58.373 52.381 0.00 0.00 0.00 4.70
142 143 2.836981 AGGATCAGAGTTTCACCTGGAG 59.163 50.000 0.00 0.00 0.00 3.86
143 144 2.834549 GAGGATCAGAGTTTCACCTGGA 59.165 50.000 0.00 0.00 33.17 3.86
144 145 2.417924 CGAGGATCAGAGTTTCACCTGG 60.418 54.545 0.00 0.00 33.17 4.45
145 146 2.417924 CCGAGGATCAGAGTTTCACCTG 60.418 54.545 0.00 0.00 33.17 4.00
146 147 1.827969 CCGAGGATCAGAGTTTCACCT 59.172 52.381 0.00 0.00 33.17 4.00
147 148 1.134670 CCCGAGGATCAGAGTTTCACC 60.135 57.143 0.00 0.00 33.17 4.02
148 149 1.550976 ACCCGAGGATCAGAGTTTCAC 59.449 52.381 0.00 0.00 33.17 3.18
149 150 1.825474 GACCCGAGGATCAGAGTTTCA 59.175 52.381 0.00 0.00 33.17 2.69
150 151 1.202313 CGACCCGAGGATCAGAGTTTC 60.202 57.143 0.00 0.00 33.17 2.78
151 152 0.818296 CGACCCGAGGATCAGAGTTT 59.182 55.000 0.00 0.00 33.17 2.66
152 153 0.034380 TCGACCCGAGGATCAGAGTT 60.034 55.000 0.00 0.00 33.17 3.01
153 154 0.748729 GTCGACCCGAGGATCAGAGT 60.749 60.000 3.51 0.00 36.23 3.24
154 155 1.448922 GGTCGACCCGAGGATCAGAG 61.449 65.000 24.75 0.00 36.23 3.35
155 156 1.453379 GGTCGACCCGAGGATCAGA 60.453 63.158 24.75 0.00 36.23 3.27
156 157 3.121019 GGTCGACCCGAGGATCAG 58.879 66.667 24.75 0.00 36.23 2.90
170 171 4.008933 AGAGTGCTGCCACCGGTC 62.009 66.667 2.59 0.00 43.09 4.79
171 172 4.320456 CAGAGTGCTGCCACCGGT 62.320 66.667 0.00 0.00 43.09 5.28
173 174 4.320456 ACCAGAGTGCTGCCACCG 62.320 66.667 0.00 0.00 43.09 4.94
174 175 2.670934 CACCAGAGTGCTGCCACC 60.671 66.667 0.00 0.00 43.09 4.61
183 184 2.963782 AGAAAGGTTACGACACCAGAGT 59.036 45.455 9.91 0.00 39.62 3.24
184 185 3.005472 TCAGAAAGGTTACGACACCAGAG 59.995 47.826 9.91 0.00 39.62 3.35
185 186 2.960384 TCAGAAAGGTTACGACACCAGA 59.040 45.455 9.91 0.00 39.62 3.86
186 187 3.380479 TCAGAAAGGTTACGACACCAG 57.620 47.619 9.91 0.00 39.62 4.00
187 188 3.493699 CCTTCAGAAAGGTTACGACACCA 60.494 47.826 9.91 0.00 46.10 4.17
188 189 3.064931 CCTTCAGAAAGGTTACGACACC 58.935 50.000 0.00 0.00 46.10 4.16
206 207 0.955919 GTGCTACAAGAAGGCGCCTT 60.956 55.000 40.90 40.90 39.23 4.35
207 208 1.376037 GTGCTACAAGAAGGCGCCT 60.376 57.895 27.08 27.08 0.00 5.52
208 209 1.671054 TGTGCTACAAGAAGGCGCC 60.671 57.895 21.89 21.89 35.87 6.53
209 210 1.497722 GTGTGCTACAAGAAGGCGC 59.502 57.895 0.00 0.00 37.05 6.53
210 211 1.626654 CCGTGTGCTACAAGAAGGCG 61.627 60.000 4.37 0.00 28.78 5.52
211 212 0.602905 ACCGTGTGCTACAAGAAGGC 60.603 55.000 4.37 0.00 28.78 4.35
212 213 1.798813 GAACCGTGTGCTACAAGAAGG 59.201 52.381 4.37 3.26 28.78 3.46
213 214 1.455786 CGAACCGTGTGCTACAAGAAG 59.544 52.381 4.37 0.00 28.78 2.85
214 215 1.202440 ACGAACCGTGTGCTACAAGAA 60.202 47.619 0.00 0.00 39.18 2.52
215 216 0.386476 ACGAACCGTGTGCTACAAGA 59.614 50.000 0.00 0.00 39.18 3.02
216 217 0.782384 GACGAACCGTGTGCTACAAG 59.218 55.000 0.00 0.00 41.37 3.16
217 218 0.102663 TGACGAACCGTGTGCTACAA 59.897 50.000 0.00 0.00 41.37 2.41
218 219 0.315886 ATGACGAACCGTGTGCTACA 59.684 50.000 0.00 0.00 41.37 2.74
219 220 2.267188 TATGACGAACCGTGTGCTAC 57.733 50.000 0.00 0.00 41.37 3.58
220 221 2.804647 CATATGACGAACCGTGTGCTA 58.195 47.619 0.00 0.00 41.37 3.49
221 222 1.640428 CATATGACGAACCGTGTGCT 58.360 50.000 0.00 0.00 41.37 4.40
222 223 0.026285 GCATATGACGAACCGTGTGC 59.974 55.000 6.97 0.00 41.37 4.57
223 224 0.297525 CGCATATGACGAACCGTGTG 59.702 55.000 6.97 0.00 41.37 3.82
224 225 0.804544 CCGCATATGACGAACCGTGT 60.805 55.000 17.40 0.00 41.37 4.49
225 226 1.924335 CCGCATATGACGAACCGTG 59.076 57.895 17.40 0.85 41.37 4.94
226 227 1.881252 GCCGCATATGACGAACCGT 60.881 57.895 17.40 0.00 45.10 4.83
227 228 1.151777 AAGCCGCATATGACGAACCG 61.152 55.000 17.40 6.23 0.00 4.44
228 229 0.582005 GAAGCCGCATATGACGAACC 59.418 55.000 17.40 8.16 0.00 3.62
229 230 1.286501 TGAAGCCGCATATGACGAAC 58.713 50.000 17.40 10.84 0.00 3.95
230 231 2.135139 GATGAAGCCGCATATGACGAA 58.865 47.619 17.40 2.86 0.00 3.85
231 232 1.341209 AGATGAAGCCGCATATGACGA 59.659 47.619 17.40 2.07 0.00 4.20
232 233 1.723542 GAGATGAAGCCGCATATGACG 59.276 52.381 6.97 9.57 0.00 4.35
233 234 3.037431 AGAGATGAAGCCGCATATGAC 57.963 47.619 6.97 0.00 0.00 3.06
234 235 3.070015 TGAAGAGATGAAGCCGCATATGA 59.930 43.478 6.97 0.00 0.00 2.15
235 236 3.396560 TGAAGAGATGAAGCCGCATATG 58.603 45.455 0.00 0.00 0.00 1.78
236 237 3.758755 TGAAGAGATGAAGCCGCATAT 57.241 42.857 0.00 0.00 0.00 1.78
237 238 3.070015 TCATGAAGAGATGAAGCCGCATA 59.930 43.478 0.00 0.00 29.11 3.14
238 239 2.158856 TCATGAAGAGATGAAGCCGCAT 60.159 45.455 0.00 0.00 29.11 4.73
239 240 1.207811 TCATGAAGAGATGAAGCCGCA 59.792 47.619 0.00 0.00 29.11 5.69
240 241 1.945387 TCATGAAGAGATGAAGCCGC 58.055 50.000 0.00 0.00 29.11 6.53
241 242 3.725490 TCATCATGAAGAGATGAAGCCG 58.275 45.455 0.00 0.00 46.36 5.52
256 257 2.011947 CAACCGTGAGCATGTCATCAT 58.988 47.619 0.00 0.00 37.56 2.45
257 258 1.001860 TCAACCGTGAGCATGTCATCA 59.998 47.619 0.00 0.00 37.56 3.07
258 259 1.662629 CTCAACCGTGAGCATGTCATC 59.337 52.381 0.00 0.00 44.74 2.92
259 260 1.730501 CTCAACCGTGAGCATGTCAT 58.269 50.000 0.00 0.00 44.74 3.06
260 261 3.215642 CTCAACCGTGAGCATGTCA 57.784 52.632 0.00 0.00 44.74 3.58
273 274 2.671963 GCAACCGGGGTCCTCAAC 60.672 66.667 6.32 0.00 0.00 3.18
274 275 2.852075 AGCAACCGGGGTCCTCAA 60.852 61.111 6.32 0.00 0.00 3.02
275 276 3.319198 GAGCAACCGGGGTCCTCA 61.319 66.667 6.32 0.00 0.00 3.86
276 277 2.593956 AAGAGCAACCGGGGTCCTC 61.594 63.158 6.32 0.00 35.95 3.71
277 278 2.529389 AAGAGCAACCGGGGTCCT 60.529 61.111 6.32 0.00 35.95 3.85
278 279 1.833787 TACAAGAGCAACCGGGGTCC 61.834 60.000 6.32 0.00 35.95 4.46
279 280 0.391263 CTACAAGAGCAACCGGGGTC 60.391 60.000 6.32 3.76 35.57 4.46
280 281 1.125711 ACTACAAGAGCAACCGGGGT 61.126 55.000 6.32 0.00 0.00 4.95
281 282 0.899720 TACTACAAGAGCAACCGGGG 59.100 55.000 6.32 0.00 0.00 5.73
282 283 1.549170 AGTACTACAAGAGCAACCGGG 59.451 52.381 6.32 0.00 0.00 5.73
283 284 3.181489 CCTAGTACTACAAGAGCAACCGG 60.181 52.174 0.00 0.00 0.00 5.28
284 285 3.181489 CCCTAGTACTACAAGAGCAACCG 60.181 52.174 0.00 0.00 0.00 4.44
285 286 3.132467 CCCCTAGTACTACAAGAGCAACC 59.868 52.174 0.00 0.00 0.00 3.77
286 287 3.768215 ACCCCTAGTACTACAAGAGCAAC 59.232 47.826 0.00 0.00 0.00 4.17
287 288 4.057063 ACCCCTAGTACTACAAGAGCAA 57.943 45.455 0.00 0.00 0.00 3.91
288 289 3.752359 ACCCCTAGTACTACAAGAGCA 57.248 47.619 0.00 0.00 0.00 4.26
289 290 5.597594 ACATTACCCCTAGTACTACAAGAGC 59.402 44.000 0.00 0.00 0.00 4.09
290 291 7.657023 AACATTACCCCTAGTACTACAAGAG 57.343 40.000 0.00 0.00 0.00 2.85
291 292 8.339247 AGTAACATTACCCCTAGTACTACAAGA 58.661 37.037 0.00 0.00 34.19 3.02
292 293 8.411683 CAGTAACATTACCCCTAGTACTACAAG 58.588 40.741 0.00 0.00 34.19 3.16
293 294 7.147846 GCAGTAACATTACCCCTAGTACTACAA 60.148 40.741 0.00 0.00 34.19 2.41
294 295 6.322201 GCAGTAACATTACCCCTAGTACTACA 59.678 42.308 0.00 0.00 34.19 2.74
295 296 6.514048 CGCAGTAACATTACCCCTAGTACTAC 60.514 46.154 0.00 0.00 34.19 2.73
296 297 5.532406 CGCAGTAACATTACCCCTAGTACTA 59.468 44.000 1.89 1.89 34.19 1.82
297 298 4.340381 CGCAGTAACATTACCCCTAGTACT 59.660 45.833 0.00 0.00 34.19 2.73
298 299 4.614946 CGCAGTAACATTACCCCTAGTAC 58.385 47.826 0.00 0.00 34.19 2.73
299 300 3.068590 GCGCAGTAACATTACCCCTAGTA 59.931 47.826 0.30 0.00 34.19 1.82
300 301 2.159000 GCGCAGTAACATTACCCCTAGT 60.159 50.000 0.30 0.00 34.19 2.57
301 302 2.102588 AGCGCAGTAACATTACCCCTAG 59.897 50.000 11.47 0.00 34.19 3.02
302 303 2.101917 GAGCGCAGTAACATTACCCCTA 59.898 50.000 11.47 0.00 34.19 3.53
303 304 0.909623 AGCGCAGTAACATTACCCCT 59.090 50.000 11.47 0.00 34.19 4.79
304 305 1.296727 GAGCGCAGTAACATTACCCC 58.703 55.000 11.47 0.00 34.19 4.95
305 306 2.018542 TGAGCGCAGTAACATTACCC 57.981 50.000 11.47 0.00 34.19 3.69
306 307 2.222729 CGTTGAGCGCAGTAACATTACC 60.223 50.000 11.47 0.00 34.19 2.85
307 308 2.410730 ACGTTGAGCGCAGTAACATTAC 59.589 45.455 11.47 0.00 46.11 1.89
308 309 2.664568 GACGTTGAGCGCAGTAACATTA 59.335 45.455 11.47 0.00 46.11 1.90
309 310 1.459592 GACGTTGAGCGCAGTAACATT 59.540 47.619 11.47 1.35 46.11 2.71
310 311 1.068474 GACGTTGAGCGCAGTAACAT 58.932 50.000 11.47 0.00 46.11 2.71
311 312 0.031585 AGACGTTGAGCGCAGTAACA 59.968 50.000 11.47 0.00 46.11 2.41
312 313 1.137513 AAGACGTTGAGCGCAGTAAC 58.862 50.000 11.47 10.70 46.11 2.50
313 314 1.525197 CAAAGACGTTGAGCGCAGTAA 59.475 47.619 11.47 0.00 46.11 2.24
314 315 1.136690 CAAAGACGTTGAGCGCAGTA 58.863 50.000 11.47 0.00 46.11 2.74
315 316 0.810031 ACAAAGACGTTGAGCGCAGT 60.810 50.000 11.47 0.48 46.11 4.40
316 317 1.136690 TACAAAGACGTTGAGCGCAG 58.863 50.000 11.47 0.00 46.11 5.18
317 318 1.724623 GATACAAAGACGTTGAGCGCA 59.275 47.619 11.47 0.00 46.11 6.09
318 319 1.060698 GGATACAAAGACGTTGAGCGC 59.939 52.381 8.17 0.00 46.11 5.92
319 320 2.345641 CAGGATACAAAGACGTTGAGCG 59.654 50.000 8.17 0.00 39.87 5.03
320 321 3.326747 ACAGGATACAAAGACGTTGAGC 58.673 45.455 8.17 0.00 39.87 4.26
321 322 4.810790 AGACAGGATACAAAGACGTTGAG 58.189 43.478 8.17 0.00 39.87 3.02
322 323 4.866508 AGACAGGATACAAAGACGTTGA 57.133 40.909 8.17 0.00 39.87 3.18
323 324 4.152402 CCAAGACAGGATACAAAGACGTTG 59.848 45.833 0.00 0.00 43.43 4.10
324 325 4.039973 TCCAAGACAGGATACAAAGACGTT 59.960 41.667 0.00 0.00 41.41 3.99
325 326 3.576982 TCCAAGACAGGATACAAAGACGT 59.423 43.478 0.00 0.00 41.41 4.34
326 327 3.927142 GTCCAAGACAGGATACAAAGACG 59.073 47.826 0.00 0.00 40.42 4.18
327 328 3.927142 CGTCCAAGACAGGATACAAAGAC 59.073 47.826 0.00 0.00 40.42 3.01
328 329 3.576982 ACGTCCAAGACAGGATACAAAGA 59.423 43.478 0.00 0.00 40.42 2.52
329 330 3.679980 CACGTCCAAGACAGGATACAAAG 59.320 47.826 0.00 0.00 40.42 2.77
330 331 3.070446 ACACGTCCAAGACAGGATACAAA 59.930 43.478 0.00 0.00 40.42 2.83
331 332 2.631062 ACACGTCCAAGACAGGATACAA 59.369 45.455 0.00 0.00 40.42 2.41
332 333 2.029380 CACACGTCCAAGACAGGATACA 60.029 50.000 0.00 0.00 40.42 2.29
333 334 2.607187 CACACGTCCAAGACAGGATAC 58.393 52.381 0.00 0.00 40.42 2.24
334 335 1.067142 GCACACGTCCAAGACAGGATA 60.067 52.381 0.00 0.00 40.42 2.59
335 336 0.320771 GCACACGTCCAAGACAGGAT 60.321 55.000 0.00 0.00 40.42 3.24
336 337 1.069090 GCACACGTCCAAGACAGGA 59.931 57.895 0.00 0.00 34.64 3.86
337 338 2.310233 CGCACACGTCCAAGACAGG 61.310 63.158 0.00 0.00 32.09 4.00
338 339 3.234390 CGCACACGTCCAAGACAG 58.766 61.111 0.00 0.00 32.09 3.51
349 350 2.073056 TCCATCACAACATACGCACAC 58.927 47.619 0.00 0.00 0.00 3.82
350 351 2.289382 ACTCCATCACAACATACGCACA 60.289 45.455 0.00 0.00 0.00 4.57
351 352 2.094258 CACTCCATCACAACATACGCAC 59.906 50.000 0.00 0.00 0.00 5.34
352 353 2.028567 TCACTCCATCACAACATACGCA 60.029 45.455 0.00 0.00 0.00 5.24
353 354 2.604914 CTCACTCCATCACAACATACGC 59.395 50.000 0.00 0.00 0.00 4.42
354 355 3.849911 ACTCACTCCATCACAACATACG 58.150 45.455 0.00 0.00 0.00 3.06
355 356 5.470098 ACAAACTCACTCCATCACAACATAC 59.530 40.000 0.00 0.00 0.00 2.39
356 357 5.620206 ACAAACTCACTCCATCACAACATA 58.380 37.500 0.00 0.00 0.00 2.29
357 358 4.464008 ACAAACTCACTCCATCACAACAT 58.536 39.130 0.00 0.00 0.00 2.71
358 359 3.884895 ACAAACTCACTCCATCACAACA 58.115 40.909 0.00 0.00 0.00 3.33
359 360 6.560253 AATACAAACTCACTCCATCACAAC 57.440 37.500 0.00 0.00 0.00 3.32
360 361 8.684386 TTAAATACAAACTCACTCCATCACAA 57.316 30.769 0.00 0.00 0.00 3.33
361 362 8.684386 TTTAAATACAAACTCACTCCATCACA 57.316 30.769 0.00 0.00 0.00 3.58
377 378 9.891828 GCACCGATCAATCATAATTTAAATACA 57.108 29.630 0.01 0.00 0.00 2.29
393 394 9.478768 TCGTTTTATATATAAAGCACCGATCAA 57.521 29.630 23.58 4.56 34.42 2.57
394 395 9.135843 CTCGTTTTATATATAAAGCACCGATCA 57.864 33.333 23.58 5.13 34.42 2.92
395 396 8.592998 CCTCGTTTTATATATAAAGCACCGATC 58.407 37.037 23.58 8.22 34.42 3.69
396 397 7.064253 GCCTCGTTTTATATATAAAGCACCGAT 59.936 37.037 23.58 0.00 34.42 4.18
397 398 6.366877 GCCTCGTTTTATATATAAAGCACCGA 59.633 38.462 23.58 21.08 34.42 4.69
398 399 6.531439 GCCTCGTTTTATATATAAAGCACCG 58.469 40.000 23.58 19.10 34.42 4.94
399 400 6.366877 TCGCCTCGTTTTATATATAAAGCACC 59.633 38.462 23.58 12.12 34.42 5.01
400 401 7.342318 TCGCCTCGTTTTATATATAAAGCAC 57.658 36.000 23.58 16.43 34.42 4.40
401 402 7.949903 TTCGCCTCGTTTTATATATAAAGCA 57.050 32.000 23.58 13.98 34.42 3.91
402 403 7.477733 GCTTTCGCCTCGTTTTATATATAAAGC 59.522 37.037 17.54 17.54 37.73 3.51
403 404 8.861277 GCTTTCGCCTCGTTTTATATATAAAG 57.139 34.615 15.65 7.74 34.13 1.85
423 424 5.116528 CCGAACATTAACGAAAAAGGCTTTC 59.883 40.000 13.76 0.41 0.00 2.62
424 425 4.979815 CCGAACATTAACGAAAAAGGCTTT 59.020 37.500 6.68 6.68 0.00 3.51
425 426 4.542735 CCGAACATTAACGAAAAAGGCTT 58.457 39.130 0.00 0.00 0.00 4.35
426 427 3.610821 GCCGAACATTAACGAAAAAGGCT 60.611 43.478 0.00 0.00 37.97 4.58
427 428 2.659757 GCCGAACATTAACGAAAAAGGC 59.340 45.455 0.00 0.00 0.00 4.35
428 429 2.906161 CGCCGAACATTAACGAAAAAGG 59.094 45.455 0.00 0.00 0.00 3.11
429 430 3.547601 ACGCCGAACATTAACGAAAAAG 58.452 40.909 0.00 0.00 0.00 2.27
430 431 3.543670 GACGCCGAACATTAACGAAAAA 58.456 40.909 0.00 0.00 0.00 1.94
431 432 2.096318 GGACGCCGAACATTAACGAAAA 60.096 45.455 0.00 0.00 0.00 2.29
432 433 1.460359 GGACGCCGAACATTAACGAAA 59.540 47.619 0.00 0.00 0.00 3.46
433 434 1.070038 GGACGCCGAACATTAACGAA 58.930 50.000 0.00 0.00 0.00 3.85
434 435 0.038435 TGGACGCCGAACATTAACGA 60.038 50.000 0.00 0.00 0.00 3.85
435 436 0.094046 GTGGACGCCGAACATTAACG 59.906 55.000 0.00 0.00 0.00 3.18
436 437 1.127951 CAGTGGACGCCGAACATTAAC 59.872 52.381 0.00 0.00 0.00 2.01
437 438 1.001068 TCAGTGGACGCCGAACATTAA 59.999 47.619 0.00 0.00 0.00 1.40
465 466 3.659786 TCGTGAATCATCGGAACTTTGT 58.340 40.909 5.66 0.00 0.00 2.83
2604 2660 4.892934 ACTGGAACAAAGGCTCAATTACAA 59.107 37.500 0.00 0.00 38.70 2.41
2637 2693 2.425143 TTCAGATCCTGCAATGTCCC 57.575 50.000 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.