Multiple sequence alignment - TraesCS1A01G097600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G097600 chr1A 100.000 5893 0 0 1 5893 94108991 94114883 0.000000e+00 10883.0
1 TraesCS1A01G097600 chr1A 88.350 515 43 11 5395 5893 240324342 240323829 2.350000e-168 603.0
2 TraesCS1A01G097600 chr1A 88.031 518 42 8 5395 5893 202085166 202084650 3.930000e-166 595.0
3 TraesCS1A01G097600 chr1A 94.884 215 7 2 3354 3564 53267918 53267704 3.400000e-87 333.0
4 TraesCS1A01G097600 chr1A 94.884 215 7 2 3354 3564 70910385 70910599 3.400000e-87 333.0
5 TraesCS1A01G097600 chr1D 94.807 2561 80 17 2880 5400 98840291 98842838 0.000000e+00 3943.0
6 TraesCS1A01G097600 chr1D 93.892 1097 45 11 737 1823 98839091 98840175 0.000000e+00 1635.0
7 TraesCS1A01G097600 chr1D 91.057 492 34 7 5395 5877 431050174 431050664 0.000000e+00 656.0
8 TraesCS1A01G097600 chr1D 88.446 502 50 6 2197 2693 22784488 22784986 3.040000e-167 599.0
9 TraesCS1A01G097600 chr1D 88.623 501 44 11 2202 2693 22783563 22784059 1.090000e-166 597.0
10 TraesCS1A01G097600 chr1D 87.986 283 22 8 312 589 98838487 98838762 2.050000e-84 324.0
11 TraesCS1A01G097600 chr1D 81.148 366 48 11 4 349 474233813 474234177 2.090000e-69 274.0
12 TraesCS1A01G097600 chr1D 87.200 125 8 6 520 639 98839121 98839242 1.030000e-27 135.0
13 TraesCS1A01G097600 chr1D 92.135 89 4 2 2726 2813 98840181 98840267 8.020000e-24 122.0
14 TraesCS1A01G097600 chr1B 94.853 2273 88 12 2811 5071 154160974 154158719 0.000000e+00 3522.0
15 TraesCS1A01G097600 chr1B 93.366 1417 60 9 1 1396 154162851 154161448 0.000000e+00 2065.0
16 TraesCS1A01G097600 chr1B 93.878 294 14 3 1532 1823 154161393 154161102 1.950000e-119 440.0
17 TraesCS1A01G097600 chr1B 77.778 342 56 14 21 344 553628690 553629029 6.030000e-45 193.0
18 TraesCS1A01G097600 chr1B 95.556 90 3 1 2725 2813 154161096 154161007 6.160000e-30 143.0
19 TraesCS1A01G097600 chr1B 91.089 101 8 1 549 648 154162055 154161955 1.030000e-27 135.0
20 TraesCS1A01G097600 chr1B 73.256 344 62 22 1817 2149 659899507 659899831 1.350000e-16 99.0
21 TraesCS1A01G097600 chr1B 97.143 35 1 0 4945 4979 154158716 154158682 6.380000e-05 60.2
22 TraesCS1A01G097600 chr2A 86.606 881 92 15 1814 2690 423188136 423188994 0.000000e+00 950.0
23 TraesCS1A01G097600 chr2A 95.349 215 7 2 3353 3564 26137308 26137522 7.320000e-89 339.0
24 TraesCS1A01G097600 chr4D 86.261 888 87 19 1814 2693 4821497 4822357 0.000000e+00 931.0
25 TraesCS1A01G097600 chr2B 85.939 889 103 14 1814 2693 75686976 75687851 0.000000e+00 929.0
26 TraesCS1A01G097600 chr2B 88.409 509 46 11 5395 5893 671036360 671035855 8.450000e-168 601.0
27 TraesCS1A01G097600 chr2B 79.370 349 34 24 1 322 655519347 655519684 1.660000e-50 211.0
28 TraesCS1A01G097600 chr5D 86.005 886 91 27 1817 2692 546925991 546925129 0.000000e+00 918.0
29 TraesCS1A01G097600 chr7B 85.537 885 91 20 1818 2692 62766666 62765809 0.000000e+00 891.0
30 TraesCS1A01G097600 chr7B 87.059 765 86 12 1938 2693 117792539 117791779 0.000000e+00 852.0
31 TraesCS1A01G097600 chr7B 87.695 512 52 10 5391 5893 523738751 523738242 2.370000e-163 586.0
32 TraesCS1A01G097600 chr7B 75.000 336 53 21 1819 2142 34033759 34034075 6.200000e-25 126.0
33 TraesCS1A01G097600 chr5B 85.061 897 100 22 1816 2702 43862402 43861530 0.000000e+00 883.0
34 TraesCS1A01G097600 chr5B 84.058 483 59 11 1818 2294 689480854 689480384 3.240000e-122 449.0
35 TraesCS1A01G097600 chr6B 84.284 859 99 22 1818 2668 616933516 616932686 0.000000e+00 806.0
36 TraesCS1A01G097600 chr6B 86.639 479 53 8 1818 2294 644071156 644071625 2.430000e-143 520.0
37 TraesCS1A01G097600 chr6B 76.897 290 52 12 2814 3095 226359129 226359411 3.680000e-32 150.0
38 TraesCS1A01G097600 chr6D 90.562 498 30 7 5410 5893 261017330 261017824 1.380000e-180 643.0
39 TraesCS1A01G097600 chr7D 89.587 509 46 7 5391 5893 412766275 412765768 1.790000e-179 640.0
40 TraesCS1A01G097600 chr7D 86.207 203 20 6 146 344 561717728 561717530 4.630000e-51 213.0
41 TraesCS1A01G097600 chr7D 78.571 350 45 24 1 329 32866177 32866517 2.780000e-48 204.0
42 TraesCS1A01G097600 chr3D 88.605 509 49 8 5391 5893 298983790 298983285 1.400000e-170 610.0
43 TraesCS1A01G097600 chr3D 81.543 363 41 21 6 349 338882055 338881700 5.820000e-70 276.0
44 TraesCS1A01G097600 chr6A 88.566 516 38 12 5395 5893 410343976 410344487 1.820000e-169 606.0
45 TraesCS1A01G097600 chr6A 97.391 115 3 0 3885 3999 19079797 19079683 4.660000e-46 196.0
46 TraesCS1A01G097600 chr6A 78.073 301 54 10 2814 3107 151469674 151469379 4.690000e-41 180.0
47 TraesCS1A01G097600 chr7A 85.329 593 62 16 1818 2405 674070953 674071525 1.830000e-164 590.0
48 TraesCS1A01G097600 chr7A 88.312 385 31 8 1817 2200 674070588 674070959 3.240000e-122 449.0
49 TraesCS1A01G097600 chr7A 95.349 215 6 2 3354 3564 121569686 121569472 7.320000e-89 339.0
50 TraesCS1A01G097600 chr7A 82.534 292 38 9 67 348 646554050 646553762 1.640000e-60 244.0
51 TraesCS1A01G097600 chr7A 96.610 118 4 0 3882 3999 636855896 636856013 4.660000e-46 196.0
52 TraesCS1A01G097600 chr7A 75.535 327 53 18 1817 2135 78563962 78564269 1.030000e-27 135.0
53 TraesCS1A01G097600 chr4A 93.373 332 16 1 3668 3999 605434393 605434068 2.470000e-133 486.0
54 TraesCS1A01G097600 chr4A 95.349 215 6 2 3354 3564 475744836 475744622 7.320000e-89 339.0
55 TraesCS1A01G097600 chr4A 78.743 334 59 9 2814 3139 669572275 669572604 4.630000e-51 213.0
56 TraesCS1A01G097600 chr4A 96.610 118 4 0 3882 3999 430624892 430625009 4.660000e-46 196.0
57 TraesCS1A01G097600 chr3B 87.167 413 46 7 1885 2294 50153134 50152726 4.160000e-126 462.0
58 TraesCS1A01G097600 chrUn 87.637 364 29 13 1818 2178 271619050 271619400 5.500000e-110 409.0
59 TraesCS1A01G097600 chrUn 87.637 364 29 13 1818 2178 271627173 271627523 5.500000e-110 409.0
60 TraesCS1A01G097600 chrUn 81.351 370 44 16 3 349 150141243 150140876 1.620000e-70 278.0
61 TraesCS1A01G097600 chr5A 95.349 215 6 2 3354 3564 447135395 447135609 7.320000e-89 339.0
62 TraesCS1A01G097600 chr5A 97.391 115 3 0 3885 3999 430260890 430260776 4.660000e-46 196.0
63 TraesCS1A01G097600 chr5A 97.391 115 3 0 3885 3999 519794410 519794296 4.660000e-46 196.0
64 TraesCS1A01G097600 chr3A 95.349 215 6 2 3354 3564 85415160 85415374 7.320000e-89 339.0
65 TraesCS1A01G097600 chr3A 97.391 115 3 0 3885 3999 46417494 46417380 4.660000e-46 196.0
66 TraesCS1A01G097600 chr4B 81.616 359 49 12 1 349 44311266 44311617 1.250000e-71 281.0
67 TraesCS1A01G097600 chr4B 79.487 312 48 11 45 349 44470457 44470759 2.150000e-49 207.0
68 TraesCS1A01G097600 chr4B 79.032 310 49 11 47 349 44659695 44659995 1.300000e-46 198.0
69 TraesCS1A01G097600 chr2D 80.464 302 39 12 59 349 609766601 609766309 4.630000e-51 213.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G097600 chr1A 94108991 94114883 5892 False 10883.000000 10883 100.000000 1 5893 1 chr1A.!!$F2 5892
1 TraesCS1A01G097600 chr1A 240323829 240324342 513 True 603.000000 603 88.350000 5395 5893 1 chr1A.!!$R3 498
2 TraesCS1A01G097600 chr1A 202084650 202085166 516 True 595.000000 595 88.031000 5395 5893 1 chr1A.!!$R2 498
3 TraesCS1A01G097600 chr1D 98838487 98842838 4351 False 1231.800000 3943 91.204000 312 5400 5 chr1D.!!$F4 5088
4 TraesCS1A01G097600 chr1D 22783563 22784986 1423 False 598.000000 599 88.534500 2197 2693 2 chr1D.!!$F3 496
5 TraesCS1A01G097600 chr1B 154158682 154162851 4169 True 1060.866667 3522 94.314167 1 5071 6 chr1B.!!$R1 5070
6 TraesCS1A01G097600 chr2A 423188136 423188994 858 False 950.000000 950 86.606000 1814 2690 1 chr2A.!!$F2 876
7 TraesCS1A01G097600 chr4D 4821497 4822357 860 False 931.000000 931 86.261000 1814 2693 1 chr4D.!!$F1 879
8 TraesCS1A01G097600 chr2B 75686976 75687851 875 False 929.000000 929 85.939000 1814 2693 1 chr2B.!!$F1 879
9 TraesCS1A01G097600 chr2B 671035855 671036360 505 True 601.000000 601 88.409000 5395 5893 1 chr2B.!!$R1 498
10 TraesCS1A01G097600 chr5D 546925129 546925991 862 True 918.000000 918 86.005000 1817 2692 1 chr5D.!!$R1 875
11 TraesCS1A01G097600 chr7B 62765809 62766666 857 True 891.000000 891 85.537000 1818 2692 1 chr7B.!!$R1 874
12 TraesCS1A01G097600 chr7B 117791779 117792539 760 True 852.000000 852 87.059000 1938 2693 1 chr7B.!!$R2 755
13 TraesCS1A01G097600 chr7B 523738242 523738751 509 True 586.000000 586 87.695000 5391 5893 1 chr7B.!!$R3 502
14 TraesCS1A01G097600 chr5B 43861530 43862402 872 True 883.000000 883 85.061000 1816 2702 1 chr5B.!!$R1 886
15 TraesCS1A01G097600 chr6B 616932686 616933516 830 True 806.000000 806 84.284000 1818 2668 1 chr6B.!!$R1 850
16 TraesCS1A01G097600 chr7D 412765768 412766275 507 True 640.000000 640 89.587000 5391 5893 1 chr7D.!!$R1 502
17 TraesCS1A01G097600 chr3D 298983285 298983790 505 True 610.000000 610 88.605000 5391 5893 1 chr3D.!!$R1 502
18 TraesCS1A01G097600 chr6A 410343976 410344487 511 False 606.000000 606 88.566000 5395 5893 1 chr6A.!!$F1 498
19 TraesCS1A01G097600 chr7A 674070588 674071525 937 False 519.500000 590 86.820500 1817 2405 2 chr7A.!!$F3 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
868 1059 0.729140 CACGCGAGTTGGGATTTTGC 60.729 55.000 15.93 0.00 46.40 3.68 F
1671 1876 2.041350 AGGTCGGAGAGTTCCTCTTGTA 59.959 50.000 0.00 0.00 41.35 2.41 F
1866 2073 0.668535 GAAGGGTTGTGGTGCTTCAC 59.331 55.000 0.00 3.59 38.09 3.18 F
2324 2921 0.975040 GAGCAAGAGGAGCAGGGAGA 60.975 60.000 0.00 0.00 0.00 3.71 F
2355 2953 1.017387 GGCATGATCTTCGTGGGTTC 58.983 55.000 0.00 0.00 34.08 3.62 F
2447 3049 1.238439 CCACCATCAACTGACACCAC 58.762 55.000 0.00 0.00 0.00 4.16 F
2448 3050 1.476652 CCACCATCAACTGACACCACA 60.477 52.381 0.00 0.00 0.00 4.17 F
4532 5210 1.187974 CACCCAATGACATGTGCCAT 58.812 50.000 1.15 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1727 1932 0.942252 AGACCCGCTTTTCGACAAAC 59.058 50.000 0.00 0.0 41.67 2.93 R
3347 4017 0.465460 GAAACAGAGGCCACACCACA 60.465 55.000 5.01 0.0 43.14 4.17 R
3348 4018 0.465460 TGAAACAGAGGCCACACCAC 60.465 55.000 5.01 0.0 43.14 4.16 R
4167 4845 4.843220 CTGAGAAAGAACAGCACCATTT 57.157 40.909 0.00 0.0 0.00 2.32 R
4340 5018 1.383409 TGGGCTGACCATTGCATCA 59.617 52.632 0.00 0.0 46.80 3.07 R
4478 5156 1.005340 CTTCATTCTCAGAGCCACGC 58.995 55.000 0.00 0.0 0.00 5.34 R
4556 5234 1.045407 TTTGCACCGACCTCAGTAGT 58.955 50.000 0.00 0.0 0.00 2.73 R
5461 6151 0.447801 CTCATCGGGCAGGTTTTTCG 59.552 55.000 0.00 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 78 7.155328 TGTTGTGGTAAACTTTGACAAATGTT 58.845 30.769 0.05 5.66 35.73 2.71
101 103 5.757886 TGTATACTTGCAAAACTTCAGCAC 58.242 37.500 0.00 0.00 38.11 4.40
109 111 4.737765 TGCAAAACTTCAGCACGAAATAAC 59.262 37.500 0.00 0.00 32.55 1.89
113 115 7.516627 GCAAAACTTCAGCACGAAATAACATTT 60.517 33.333 0.00 0.00 31.71 2.32
122 124 5.172411 GCACGAAATAACATTTGTGAAACGT 59.828 36.000 10.74 0.00 44.19 3.99
175 179 7.571080 AAACTGGCATTTTTGAAACATCAAT 57.429 28.000 0.00 0.00 0.00 2.57
646 657 1.557371 TCGGAGAGCAGAAGAGAGAGA 59.443 52.381 0.00 0.00 0.00 3.10
647 658 1.942657 CGGAGAGCAGAAGAGAGAGAG 59.057 57.143 0.00 0.00 0.00 3.20
648 659 2.419990 CGGAGAGCAGAAGAGAGAGAGA 60.420 54.545 0.00 0.00 0.00 3.10
735 852 4.339872 TTTTGCAGCAAATTCACTGGAT 57.660 36.364 21.25 0.00 34.02 3.41
794 985 7.489757 CCTAAAATTTCACGAAAACCTGAACAA 59.510 33.333 0.00 0.00 33.56 2.83
868 1059 0.729140 CACGCGAGTTGGGATTTTGC 60.729 55.000 15.93 0.00 46.40 3.68
932 1127 2.606751 TTCCCCTTCGACTCTTCTCT 57.393 50.000 0.00 0.00 0.00 3.10
1245 1449 3.748568 ACGGCTTTCTGTTTCAGATTCTC 59.251 43.478 0.24 0.00 40.39 2.87
1254 1458 2.997986 GTTTCAGATTCTCGGCGGTTTA 59.002 45.455 7.21 0.00 0.00 2.01
1434 1638 5.870706 TCTCTATCTTCTTCTGCTATCCGA 58.129 41.667 0.00 0.00 0.00 4.55
1471 1675 9.289782 AGCTTTGTATCATTTACATAGATTCCC 57.710 33.333 7.20 0.00 31.19 3.97
1488 1692 4.829872 TTCCCGGTTCTCAAATAGCTTA 57.170 40.909 0.00 0.00 0.00 3.09
1497 1702 7.530863 GGTTCTCAAATAGCTTAAGTTCTTGG 58.469 38.462 4.02 0.00 0.00 3.61
1671 1876 2.041350 AGGTCGGAGAGTTCCTCTTGTA 59.959 50.000 0.00 0.00 41.35 2.41
1727 1932 7.704789 TTCATCATGTTTACATCTCTGATCG 57.295 36.000 0.00 0.00 33.61 3.69
1764 1969 6.575254 GCGGGTCTCAGAAATCCAAGATATAT 60.575 42.308 0.00 0.00 0.00 0.86
1795 2002 9.486497 TGTATACTCTTTCGATCTCGTAGTATT 57.514 33.333 16.53 8.18 40.80 1.89
1797 2004 5.976586 ACTCTTTCGATCTCGTAGTATTCG 58.023 41.667 0.00 0.00 40.80 3.34
1851 2058 4.530875 ACTAAGCTCCCATGATTTGAAGG 58.469 43.478 0.00 0.00 0.00 3.46
1866 2073 0.668535 GAAGGGTTGTGGTGCTTCAC 59.331 55.000 0.00 3.59 38.09 3.18
2064 2273 8.184192 ACATTCATGGATATTTTCGAAGTTCAC 58.816 33.333 3.32 0.00 0.00 3.18
2065 2274 6.344572 TCATGGATATTTTCGAAGTTCACG 57.655 37.500 3.32 0.00 0.00 4.35
2067 2276 4.250464 TGGATATTTTCGAAGTTCACGCT 58.750 39.130 3.32 0.00 0.00 5.07
2068 2277 4.328983 TGGATATTTTCGAAGTTCACGCTC 59.671 41.667 3.32 0.00 0.00 5.03
2070 2279 3.521524 ATTTTCGAAGTTCACGCTCAC 57.478 42.857 3.32 0.00 0.00 3.51
2073 2282 2.218953 TCGAAGTTCACGCTCACTTT 57.781 45.000 3.32 0.00 33.22 2.66
2074 2283 2.546778 TCGAAGTTCACGCTCACTTTT 58.453 42.857 3.32 0.00 33.22 2.27
2075 2284 3.708890 TCGAAGTTCACGCTCACTTTTA 58.291 40.909 3.32 0.00 33.22 1.52
2078 2287 4.898488 CGAAGTTCACGCTCACTTTTAAAG 59.102 41.667 2.81 2.81 33.22 1.85
2079 2288 5.501897 CGAAGTTCACGCTCACTTTTAAAGT 60.502 40.000 4.30 4.30 44.06 2.66
2080 2289 5.813080 AGTTCACGCTCACTTTTAAAGTT 57.187 34.783 7.71 0.00 40.46 2.66
2082 2291 6.027749 AGTTCACGCTCACTTTTAAAGTTTG 58.972 36.000 7.71 5.22 40.46 2.93
2084 2293 5.328691 TCACGCTCACTTTTAAAGTTTGTG 58.671 37.500 7.71 13.02 40.46 3.33
2087 2296 5.798434 ACGCTCACTTTTAAAGTTTGTGAAC 59.202 36.000 19.57 7.41 40.46 3.18
2089 2298 6.237201 CGCTCACTTTTAAAGTTTGTGAACAC 60.237 38.462 7.71 0.00 40.46 3.32
2093 2302 9.535878 TCACTTTTAAAGTTTGTGAACACTTTT 57.464 25.926 7.71 5.08 39.69 2.27
2094 2303 9.579610 CACTTTTAAAGTTTGTGAACACTTTTG 57.420 29.630 7.71 0.00 39.69 2.44
2101 2310 8.600449 AAGTTTGTGAACACTTTTGAAATTCA 57.400 26.923 6.51 0.00 38.26 2.57
2102 2311 8.600449 AGTTTGTGAACACTTTTGAAATTCAA 57.400 26.923 4.03 4.03 38.26 2.69
2103 2312 9.050601 AGTTTGTGAACACTTTTGAAATTCAAA 57.949 25.926 16.28 16.28 40.00 2.69
2104 2313 9.657121 GTTTGTGAACACTTTTGAAATTCAAAA 57.343 25.926 26.19 26.19 42.45 2.44
2156 2365 9.746711 GAAATCCATGAATATATTTCGAACTCG 57.253 33.333 0.00 0.00 41.45 4.18
2157 2366 8.833231 AATCCATGAATATATTTCGAACTCGT 57.167 30.769 0.00 0.00 40.80 4.18
2158 2367 7.637709 TCCATGAATATATTTCGAACTCGTG 57.362 36.000 0.00 0.25 40.80 4.35
2160 2369 7.923878 TCCATGAATATATTTCGAACTCGTGAA 59.076 33.333 0.00 0.00 40.80 3.18
2162 2371 9.521179 CATGAATATATTTCGAACTCGTGAATG 57.479 33.333 0.00 0.00 40.80 2.67
2164 2373 9.093970 TGAATATATTTCGAACTCGTGAATGTT 57.906 29.630 0.00 0.00 40.80 2.71
2169 2378 2.609916 TCGAACTCGTGAATGTTTTGCA 59.390 40.909 0.00 0.00 40.80 4.08
2170 2379 3.064134 TCGAACTCGTGAATGTTTTGCAA 59.936 39.130 0.00 0.00 40.80 4.08
2172 2381 4.264145 CGAACTCGTGAATGTTTTGCAAAA 59.736 37.500 20.46 20.46 34.11 2.44
2173 2382 5.051774 CGAACTCGTGAATGTTTTGCAAAAT 60.052 36.000 26.24 11.85 34.11 1.82
2174 2383 6.507771 CGAACTCGTGAATGTTTTGCAAAATT 60.508 34.615 26.24 17.71 34.11 1.82
2176 2385 5.809562 ACTCGTGAATGTTTTGCAAAATTCA 59.190 32.000 26.02 26.02 42.25 2.57
2177 2386 6.479660 ACTCGTGAATGTTTTGCAAAATTCAT 59.520 30.769 29.58 24.08 44.88 2.57
2178 2387 6.647569 TCGTGAATGTTTTGCAAAATTCATG 58.352 32.000 31.84 31.84 44.88 3.07
2179 2388 5.846994 CGTGAATGTTTTGCAAAATTCATGG 59.153 36.000 30.98 24.47 44.88 3.66
2183 2392 8.248945 TGAATGTTTTGCAAAATTCATGGTTTT 58.751 25.926 26.02 13.89 40.41 2.43
2192 2401 9.443283 TGCAAAATTCATGGTTTTTAAATTTCG 57.557 25.926 0.00 0.00 31.17 3.46
2324 2921 0.975040 GAGCAAGAGGAGCAGGGAGA 60.975 60.000 0.00 0.00 0.00 3.71
2343 2941 1.822613 CAAGCTGAGCGGGCATGAT 60.823 57.895 0.00 0.00 31.17 2.45
2355 2953 1.017387 GGCATGATCTTCGTGGGTTC 58.983 55.000 0.00 0.00 34.08 3.62
2391 2992 6.087555 GTGTTATAGCAACAATTTCACGGTTG 59.912 38.462 0.00 0.00 43.53 3.77
2447 3049 1.238439 CCACCATCAACTGACACCAC 58.762 55.000 0.00 0.00 0.00 4.16
2448 3050 1.476652 CCACCATCAACTGACACCACA 60.477 52.381 0.00 0.00 0.00 4.17
2500 3102 3.996363 GCACCAAACAATTTCATTCTCCC 59.004 43.478 0.00 0.00 0.00 4.30
2536 3140 3.879295 CAGTCTCCAACAACACTGACATT 59.121 43.478 0.00 0.00 38.90 2.71
2580 3185 9.723601 ACCATCAAAACATAATTAAAGCACAAT 57.276 25.926 0.00 0.00 0.00 2.71
2712 3317 5.717119 AGTTATTTTCCAATTCAGCAGCTG 58.283 37.500 17.10 17.10 0.00 4.24
2713 3318 5.477984 AGTTATTTTCCAATTCAGCAGCTGA 59.522 36.000 21.85 21.85 38.87 4.26
2714 3319 6.154021 AGTTATTTTCCAATTCAGCAGCTGAT 59.846 34.615 25.94 8.90 40.39 2.90
2715 3320 4.445452 TTTTCCAATTCAGCAGCTGATC 57.555 40.909 25.94 0.00 40.39 2.92
2716 3321 3.361281 TTCCAATTCAGCAGCTGATCT 57.639 42.857 25.94 13.52 40.39 2.75
2717 3322 3.361281 TCCAATTCAGCAGCTGATCTT 57.639 42.857 25.94 18.38 40.39 2.40
2718 3323 3.276857 TCCAATTCAGCAGCTGATCTTC 58.723 45.455 25.94 0.00 40.39 2.87
2719 3324 3.014623 CCAATTCAGCAGCTGATCTTCA 58.985 45.455 25.94 11.09 40.39 3.02
2720 3325 3.442625 CCAATTCAGCAGCTGATCTTCAA 59.557 43.478 25.94 10.32 40.39 2.69
2721 3326 4.082408 CCAATTCAGCAGCTGATCTTCAAA 60.082 41.667 25.94 9.55 40.39 2.69
2722 3327 5.466819 CAATTCAGCAGCTGATCTTCAAAA 58.533 37.500 25.94 8.77 40.39 2.44
2723 3328 5.717078 ATTCAGCAGCTGATCTTCAAAAA 57.283 34.783 25.94 8.01 40.39 1.94
2873 3514 5.385509 ACAAAGGAATTTTACCATCCACG 57.614 39.130 0.00 0.00 35.62 4.94
2876 3517 3.016736 AGGAATTTTACCATCCACGCAG 58.983 45.455 0.00 0.00 35.62 5.18
2933 3574 4.122143 GCAAAGGCCATAATAAGTTGCA 57.878 40.909 5.01 0.00 39.65 4.08
2934 3575 4.696455 GCAAAGGCCATAATAAGTTGCAT 58.304 39.130 5.01 0.00 39.65 3.96
2939 3580 9.160496 CAAAGGCCATAATAAGTTGCATAAAAA 57.840 29.630 5.01 0.00 0.00 1.94
2996 3657 8.408043 TTTGATTTGAAGCTTCTTAGGATTCA 57.592 30.769 26.09 15.45 37.32 2.57
3200 3865 7.709182 TGTGGTTCCGTATCTATTTCAGTTATG 59.291 37.037 0.00 0.00 0.00 1.90
3202 3867 7.924412 TGGTTCCGTATCTATTTCAGTTATGAC 59.076 37.037 0.00 0.00 34.35 3.06
3347 4017 4.546829 TTAGATTACGACAAACAGGGCT 57.453 40.909 0.00 0.00 0.00 5.19
3348 4018 2.699954 AGATTACGACAAACAGGGCTG 58.300 47.619 0.00 0.00 0.00 4.85
3437 4112 3.053831 ACTCCGGTGTGGTTTCTATTG 57.946 47.619 8.68 0.00 39.52 1.90
3441 4116 4.258543 TCCGGTGTGGTTTCTATTGAATC 58.741 43.478 0.00 0.00 39.52 2.52
3485 4160 7.636150 TTTTCATCCATTCATCTCTTTCTCC 57.364 36.000 0.00 0.00 0.00 3.71
3536 4211 2.778659 GCTGCATTTTCTAGAACAGCG 58.221 47.619 22.56 15.09 40.83 5.18
3593 4271 6.645415 CGTAGTTTGTCAGAACTCCTTACAAT 59.355 38.462 4.37 0.00 38.40 2.71
3677 4355 4.142773 ACGGTTGGTTCTAATGTATTTGCG 60.143 41.667 0.00 0.00 0.00 4.85
3697 4375 4.632251 TGCGGTACAATTGTATTTCGATGT 59.368 37.500 27.34 4.45 32.54 3.06
4122 4800 6.709018 TTTTTCTTTTCTTGGATCCGTCTT 57.291 33.333 7.39 0.00 0.00 3.01
4167 4845 6.938698 TGTGGGACTTATTTCAGTAGGTAA 57.061 37.500 0.00 0.00 0.00 2.85
4171 4849 8.674607 GTGGGACTTATTTCAGTAGGTAAAATG 58.325 37.037 0.00 0.00 0.00 2.32
4178 4856 4.634012 TCAGTAGGTAAAATGGTGCTGT 57.366 40.909 0.00 0.00 0.00 4.40
4224 4902 8.153479 TCTTATGGTGCACATGTTATAATGTC 57.847 34.615 20.43 0.00 38.75 3.06
4478 5156 2.125350 GCTTGCTCTCACCCTCGG 60.125 66.667 0.00 0.00 0.00 4.63
4532 5210 1.187974 CACCCAATGACATGTGCCAT 58.812 50.000 1.15 0.00 0.00 4.40
4556 5234 4.373116 GACCTGAGGCGAACGGCA 62.373 66.667 21.28 2.42 46.16 5.69
4607 5285 3.776781 CCCCATGCGTACGACCCA 61.777 66.667 21.65 8.10 0.00 4.51
4670 5348 5.562890 GCATGATGATGAACATGGTCATGAG 60.563 44.000 30.53 11.52 42.53 2.90
4694 5372 1.145900 TGGAAGATTTGGGAGGGCCA 61.146 55.000 6.18 0.00 35.15 5.36
4784 5462 1.023513 GGCGGCAGGAGCATGATATC 61.024 60.000 3.07 0.00 44.61 1.63
4874 5552 1.398390 CAAGGTAATTCTGACGCCAGC 59.602 52.381 0.00 0.00 40.20 4.85
4985 5663 8.654230 TTTTTGCTGTTGTAATTTTCTATGCA 57.346 26.923 0.00 0.00 0.00 3.96
4989 5667 6.862608 TGCTGTTGTAATTTTCTATGCAGTTG 59.137 34.615 0.00 0.00 0.00 3.16
5017 5695 1.138247 CAATCTGGCTGCTTTCCGC 59.862 57.895 0.00 0.00 39.77 5.54
5186 5865 6.786207 TCTCGTTTCAGAGTGTATCATAGTG 58.214 40.000 0.00 0.00 39.21 2.74
5191 5870 3.694566 TCAGAGTGTATCATAGTGTGCGT 59.305 43.478 0.00 0.00 0.00 5.24
5217 5896 8.922058 TCTTATTCGTTGGTAGACAAATAGAC 57.078 34.615 0.00 0.00 41.58 2.59
5220 5899 6.961359 TTCGTTGGTAGACAAATAGACATG 57.039 37.500 0.00 0.00 41.58 3.21
5424 6114 3.402681 CAGACCCCACATCCCGCT 61.403 66.667 0.00 0.00 0.00 5.52
5478 6170 1.154035 GCGAAAAACCTGCCCGATG 60.154 57.895 0.00 0.00 0.00 3.84
5595 6288 0.534877 CGGTGCCCTGCATATAAGCA 60.535 55.000 2.21 2.21 41.91 3.91
5854 6573 0.965866 AAGCGATGGAGTGGTCGAGA 60.966 55.000 0.00 0.00 40.11 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 42 9.495572 AAAGTTTACCACAACAAAAATTCAGAA 57.504 25.926 0.00 0.00 0.00 3.02
47 49 8.433421 TTTGTCAAAGTTTACCACAACAAAAA 57.567 26.923 0.00 0.00 33.76 1.94
76 78 6.695278 GTGCTGAAGTTTTGCAAGTATACAAA 59.305 34.615 5.50 0.00 38.50 2.83
101 103 6.344624 CCACACGTTTCACAAATGTTATTTCG 60.345 38.462 0.00 0.00 38.51 3.46
109 111 5.518128 TGATTTTCCACACGTTTCACAAATG 59.482 36.000 0.00 0.00 0.00 2.32
113 115 4.082733 TGTTGATTTTCCACACGTTTCACA 60.083 37.500 0.00 0.00 0.00 3.58
122 124 5.738909 ACATTTTGGTGTTGATTTTCCACA 58.261 33.333 0.00 0.00 0.00 4.17
196 200 4.827304 TTTCAGCACGAAATGACATTCA 57.173 36.364 0.05 0.00 38.72 2.57
223 227 7.477494 ACTTTGACAAATGTTTAGTACGCTTT 58.523 30.769 0.05 0.00 0.00 3.51
459 464 8.072321 AGAGCTGAGAAGTGATGTAAAATAGA 57.928 34.615 0.00 0.00 0.00 1.98
639 650 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
640 651 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
641 652 6.418057 AATCTCTCTCTCTCTCTCTCTCTC 57.582 45.833 0.00 0.00 0.00 3.20
642 653 6.614906 AGAAATCTCTCTCTCTCTCTCTCTCT 59.385 42.308 0.00 0.00 0.00 3.10
644 655 6.821616 AGAAATCTCTCTCTCTCTCTCTCT 57.178 41.667 0.00 0.00 0.00 3.10
894 1089 0.765510 AAAGTGAGGGGAGAAAGCGT 59.234 50.000 0.00 0.00 0.00 5.07
932 1127 1.001760 GAGGTGAGGGTGGGAGCTA 59.998 63.158 0.00 0.00 0.00 3.32
1187 1390 0.190815 AGGCCCAAACCAAGAACCAT 59.809 50.000 0.00 0.00 0.00 3.55
1245 1449 1.531149 CATGGAAGCTATAAACCGCCG 59.469 52.381 0.00 0.00 0.00 6.46
1254 1458 5.690464 AGAACTCTGTTCATGGAAGCTAT 57.310 39.130 12.16 0.00 0.00 2.97
1300 1504 3.370527 GGAAGGATCACGGATCAAAGGAA 60.371 47.826 13.59 0.00 40.50 3.36
1471 1675 6.969828 AGAACTTAAGCTATTTGAGAACCG 57.030 37.500 1.29 0.00 0.00 4.44
1488 1692 7.514721 TGTTCAGTATAGTTTCCCAAGAACTT 58.485 34.615 0.00 0.00 38.28 2.66
1497 1702 8.784043 ACAGAAATGTTGTTCAGTATAGTTTCC 58.216 33.333 0.00 0.00 0.00 3.13
1671 1876 2.936919 TCAGAGCACACAAACCTGAT 57.063 45.000 0.00 0.00 0.00 2.90
1727 1932 0.942252 AGACCCGCTTTTCGACAAAC 59.058 50.000 0.00 0.00 41.67 2.93
1795 2002 8.020777 AGATAGATCGATAGTAATCCTACCGA 57.979 38.462 0.00 0.00 37.40 4.69
1851 2058 2.551912 CCCGTGAAGCACCACAACC 61.552 63.158 8.80 0.00 36.89 3.77
1893 2100 1.710809 ACAATCTTACAAGTGGGGCCT 59.289 47.619 0.84 0.00 0.00 5.19
2038 2247 8.184192 GTGAACTTCGAAAATATCCATGAATGT 58.816 33.333 0.00 0.00 0.00 2.71
2039 2248 7.374228 CGTGAACTTCGAAAATATCCATGAATG 59.626 37.037 0.00 0.00 0.00 2.67
2042 2251 5.220586 GCGTGAACTTCGAAAATATCCATGA 60.221 40.000 0.00 0.00 0.00 3.07
2043 2252 4.963953 GCGTGAACTTCGAAAATATCCATG 59.036 41.667 0.00 0.00 0.00 3.66
2044 2253 4.876107 AGCGTGAACTTCGAAAATATCCAT 59.124 37.500 0.00 0.00 0.00 3.41
2046 2255 4.328983 TGAGCGTGAACTTCGAAAATATCC 59.671 41.667 0.00 0.00 0.00 2.59
2047 2256 5.062308 AGTGAGCGTGAACTTCGAAAATATC 59.938 40.000 0.00 0.00 0.00 1.63
2048 2257 4.929808 AGTGAGCGTGAACTTCGAAAATAT 59.070 37.500 0.00 0.00 0.00 1.28
2049 2258 4.304110 AGTGAGCGTGAACTTCGAAAATA 58.696 39.130 0.00 0.00 0.00 1.40
2050 2259 3.131396 AGTGAGCGTGAACTTCGAAAAT 58.869 40.909 0.00 0.00 0.00 1.82
2051 2260 2.546778 AGTGAGCGTGAACTTCGAAAA 58.453 42.857 0.00 0.00 0.00 2.29
2055 2264 4.446857 TTAAAAGTGAGCGTGAACTTCG 57.553 40.909 0.35 0.00 35.60 3.79
2056 2265 5.807344 ACTTTAAAAGTGAGCGTGAACTTC 58.193 37.500 0.00 0.00 41.01 3.01
2059 2268 5.798434 ACAAACTTTAAAAGTGAGCGTGAAC 59.202 36.000 0.00 0.00 41.91 3.18
2061 2270 5.122554 TCACAAACTTTAAAAGTGAGCGTGA 59.877 36.000 7.81 0.00 41.91 4.35
2062 2271 5.328691 TCACAAACTTTAAAAGTGAGCGTG 58.671 37.500 7.81 0.00 41.91 5.34
2064 2273 5.797934 TGTTCACAAACTTTAAAAGTGAGCG 59.202 36.000 15.14 0.00 41.91 5.03
2065 2274 6.806739 AGTGTTCACAAACTTTAAAAGTGAGC 59.193 34.615 14.15 14.15 41.91 4.26
2067 2276 9.535878 AAAAGTGTTCACAAACTTTAAAAGTGA 57.464 25.926 5.74 7.81 43.92 3.41
2068 2277 9.579610 CAAAAGTGTTCACAAACTTTAAAAGTG 57.420 29.630 5.74 0.00 43.92 3.16
2075 2284 9.050601 TGAATTTCAAAAGTGTTCACAAACTTT 57.949 25.926 5.74 0.00 46.03 2.66
2130 2339 9.746711 CGAGTTCGAAATATATTCATGGATTTC 57.253 33.333 0.00 0.69 43.02 2.17
2131 2340 9.273016 ACGAGTTCGAAATATATTCATGGATTT 57.727 29.630 8.72 0.00 43.02 2.17
2135 2344 7.637709 TCACGAGTTCGAAATATATTCATGG 57.362 36.000 8.72 0.00 43.02 3.66
2136 2345 9.521179 CATTCACGAGTTCGAAATATATTCATG 57.479 33.333 8.72 0.00 43.02 3.07
2137 2346 9.261180 ACATTCACGAGTTCGAAATATATTCAT 57.739 29.630 8.72 0.00 43.02 2.57
2139 2348 9.916397 AAACATTCACGAGTTCGAAATATATTC 57.084 29.630 8.72 0.00 43.02 1.75
2141 2350 9.702726 CAAAACATTCACGAGTTCGAAATATAT 57.297 29.630 8.72 0.00 43.02 0.86
2144 2353 5.849081 GCAAAACATTCACGAGTTCGAAATA 59.151 36.000 8.72 0.00 43.02 1.40
2146 2355 4.032355 GCAAAACATTCACGAGTTCGAAA 58.968 39.130 8.72 2.91 43.02 3.46
2150 2359 5.694674 TTTTGCAAAACATTCACGAGTTC 57.305 34.783 20.46 0.00 0.00 3.01
2151 2360 6.312426 TGAATTTTGCAAAACATTCACGAGTT 59.688 30.769 26.02 15.04 27.80 3.01
2152 2361 5.809562 TGAATTTTGCAAAACATTCACGAGT 59.190 32.000 26.02 8.61 27.80 4.18
2153 2362 6.271396 TGAATTTTGCAAAACATTCACGAG 57.729 33.333 26.02 0.00 27.80 4.18
2154 2363 6.292757 CCATGAATTTTGCAAAACATTCACGA 60.293 34.615 29.56 16.17 32.75 4.35
2155 2364 5.846994 CCATGAATTTTGCAAAACATTCACG 59.153 36.000 29.56 24.70 32.75 4.35
2156 2365 6.727215 ACCATGAATTTTGCAAAACATTCAC 58.273 32.000 29.56 17.60 32.75 3.18
2157 2366 6.939132 ACCATGAATTTTGCAAAACATTCA 57.061 29.167 29.30 29.30 33.79 2.57
2158 2367 8.631676 AAAACCATGAATTTTGCAAAACATTC 57.368 26.923 26.05 24.05 0.00 2.67
2166 2375 9.443283 CGAAATTTAAAAACCATGAATTTTGCA 57.557 25.926 14.79 0.00 32.00 4.08
2238 2828 8.470040 AATTGACGATCATTTTCCATTTGAAG 57.530 30.769 0.00 0.00 33.63 3.02
2324 2921 2.547640 ATCATGCCCGCTCAGCTTGT 62.548 55.000 0.00 0.00 36.89 3.16
2343 2941 1.206132 ACATATGCGAACCCACGAAGA 59.794 47.619 1.58 0.00 35.09 2.87
2355 2953 5.234116 TGTTGCTATAACACTCACATATGCG 59.766 40.000 1.58 0.00 0.00 4.73
2391 2992 3.576118 TGAGAGCTCCTATTCCATGCTAC 59.424 47.826 10.93 0.00 33.83 3.58
2506 3108 5.527582 AGTGTTGTTGGAGACTGTATTTGTC 59.472 40.000 0.00 0.00 34.88 3.18
2574 3179 8.700722 TGGATTTTATATGTGTTGAATTGTGC 57.299 30.769 0.00 0.00 0.00 4.57
2629 3234 9.645059 CACTCTGAGATTAACTCTTTTGTATCA 57.355 33.333 12.44 0.00 45.13 2.15
2634 3239 8.824159 TCTTCACTCTGAGATTAACTCTTTTG 57.176 34.615 12.44 0.00 45.13 2.44
2723 3328 4.098501 GCCCTACATTAGCTGCTGATTTTT 59.901 41.667 13.43 0.00 0.00 1.94
2727 3332 1.072965 GGCCCTACATTAGCTGCTGAT 59.927 52.381 13.43 6.78 0.00 2.90
2799 3404 9.487790 GAAAAATTCCTCCATTAACAATGTCAA 57.512 29.630 0.00 0.00 37.18 3.18
2836 3477 6.954616 TTCCTTTGTTTTTCCTTCGAAAAC 57.045 33.333 0.00 0.75 45.43 2.43
2996 3657 2.099405 CGGGGGAACATTAAAGCACAT 58.901 47.619 0.00 0.00 0.00 3.21
3200 3865 4.970662 TTAGGCAAAAGATGAGCATGTC 57.029 40.909 0.00 0.00 0.00 3.06
3305 3975 0.916086 ACCCAAGGATATTGACCGCA 59.084 50.000 0.00 0.00 0.00 5.69
3347 4017 0.465460 GAAACAGAGGCCACACCACA 60.465 55.000 5.01 0.00 43.14 4.17
3348 4018 0.465460 TGAAACAGAGGCCACACCAC 60.465 55.000 5.01 0.00 43.14 4.16
3437 4112 8.738645 AATGACACCCTCACTATTTTAGATTC 57.261 34.615 0.00 0.00 0.00 2.52
3441 4116 8.335532 TGAAAATGACACCCTCACTATTTTAG 57.664 34.615 0.00 0.00 0.00 1.85
3485 4160 9.944663 TTGTAAACATAACTTTTAGACAAGCTG 57.055 29.630 0.00 0.00 0.00 4.24
3677 4355 8.234546 ACAGAAACATCGAAATACAATTGTACC 58.765 33.333 20.26 11.41 32.72 3.34
4023 4701 5.547465 AGTGTATCGAAGACAAATGGAACA 58.453 37.500 5.19 0.00 43.16 3.18
4029 4707 6.072673 GGTTCCAAAGTGTATCGAAGACAAAT 60.073 38.462 5.19 0.00 42.51 2.32
4038 4716 5.411361 TCTTTGATGGTTCCAAAGTGTATCG 59.589 40.000 13.23 0.00 46.30 2.92
4146 4824 7.832187 CCATTTTACCTACTGAAATAAGTCCCA 59.168 37.037 0.00 0.00 0.00 4.37
4150 4828 7.888546 AGCACCATTTTACCTACTGAAATAAGT 59.111 33.333 0.00 0.00 0.00 2.24
4167 4845 4.843220 CTGAGAAAGAACAGCACCATTT 57.157 40.909 0.00 0.00 0.00 2.32
4224 4902 6.490040 TCCCTGAAAGTGACAAATAGGAAAAG 59.510 38.462 0.00 0.00 0.00 2.27
4340 5018 1.383409 TGGGCTGACCATTGCATCA 59.617 52.632 0.00 0.00 46.80 3.07
4478 5156 1.005340 CTTCATTCTCAGAGCCACGC 58.995 55.000 0.00 0.00 0.00 5.34
4553 5231 1.215647 CACCGACCTCAGTAGTGCC 59.784 63.158 0.00 0.00 0.00 5.01
4556 5234 1.045407 TTTGCACCGACCTCAGTAGT 58.955 50.000 0.00 0.00 0.00 2.73
4598 5276 0.179094 TGCCGAATGATGGGTCGTAC 60.179 55.000 0.00 0.00 35.48 3.67
4670 5348 2.305009 CCTCCCAAATCTTCCAGATGC 58.695 52.381 0.00 0.00 34.65 3.91
4694 5372 3.795688 TTCCTGCAAGATGGTCTTTCT 57.204 42.857 0.00 0.00 33.78 2.52
4893 5571 4.806247 GGTGTGATTGCACTCTGATAGTAC 59.194 45.833 5.59 0.00 45.36 2.73
4985 5663 3.555586 GCCAGATTGCAACAAATCCAACT 60.556 43.478 0.00 0.00 37.28 3.16
4989 5667 2.613691 CAGCCAGATTGCAACAAATCC 58.386 47.619 0.00 0.00 37.28 3.01
5134 5813 5.723295 ACCCAAACATCATGTAATGCTTTC 58.277 37.500 0.00 0.00 46.21 2.62
5186 5865 3.922240 TCTACCAACGAATAAGAACGCAC 59.078 43.478 0.00 0.00 0.00 5.34
5191 5870 9.362539 GTCTATTTGTCTACCAACGAATAAGAA 57.637 33.333 0.00 0.00 35.87 2.52
5293 5981 4.085357 TGTGCCATGTTTTCTACTCTGT 57.915 40.909 0.00 0.00 0.00 3.41
5296 5984 7.761409 TGATATTTGTGCCATGTTTTCTACTC 58.239 34.615 0.00 0.00 0.00 2.59
5327 6015 9.236006 GGAGAAATTATATTCTACCATGCACAT 57.764 33.333 0.00 0.00 39.70 3.21
5424 6114 1.020333 CGGTTATTTTGCGGGTCGGA 61.020 55.000 0.00 0.00 0.00 4.55
5461 6151 0.447801 CTCATCGGGCAGGTTTTTCG 59.552 55.000 0.00 0.00 0.00 3.46
5508 6200 1.446618 GCCGCAGCCCTCAAAATTG 60.447 57.895 0.00 0.00 0.00 2.32
5520 6213 2.100991 GCCGAGATTTTGCCGCAG 59.899 61.111 0.00 0.00 0.00 5.18
5595 6288 3.966543 CCCCACCAACCGCTTCCT 61.967 66.667 0.00 0.00 0.00 3.36
5731 6440 3.093172 CAAGGGGGAGAGGGGAGC 61.093 72.222 0.00 0.00 0.00 4.70
5854 6573 4.496336 GGGCTGCGGGAGATGCTT 62.496 66.667 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.