Multiple sequence alignment - TraesCS1A01G097300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G097300 chr1A 100.000 3993 0 0 1 3993 93404931 93400939 0.000000e+00 7374.0
1 TraesCS1A01G097300 chr1A 78.912 147 24 6 205 349 343655231 343655372 4.250000e-15 93.5
2 TraesCS1A01G097300 chr1A 100.000 28 0 0 318 345 425749376 425749403 7.000000e-03 52.8
3 TraesCS1A01G097300 chr1D 92.664 3626 156 56 405 3988 97925353 97921796 0.000000e+00 5121.0
4 TraesCS1A01G097300 chr1D 93.659 205 12 1 1 205 432685737 432685940 5.010000e-79 305.0
5 TraesCS1A01G097300 chr1D 93.939 99 5 1 309 406 97925531 97925433 8.940000e-32 148.0
6 TraesCS1A01G097300 chr1D 74.742 194 37 9 224 410 270213575 270213763 4.280000e-10 76.8
7 TraesCS1A01G097300 chr1B 91.727 3481 174 50 402 3829 155403596 155407015 0.000000e+00 4728.0
8 TraesCS1A01G097300 chr1B 90.152 660 46 13 3339 3988 155407026 155407676 0.000000e+00 841.0
9 TraesCS1A01G097300 chr1B 93.659 205 13 0 1 205 450904313 450904517 1.390000e-79 307.0
10 TraesCS1A01G097300 chr1B 91.919 99 7 1 309 406 155403421 155403519 1.940000e-28 137.0
11 TraesCS1A01G097300 chr7D 94.146 205 12 0 1 205 635569355 635569559 3.000000e-81 313.0
12 TraesCS1A01G097300 chr3D 94.146 205 12 0 1 205 15617864 15618068 3.000000e-81 313.0
13 TraesCS1A01G097300 chr3D 95.812 191 8 0 1 191 394910472 394910662 3.880000e-80 309.0
14 TraesCS1A01G097300 chr3D 91.781 219 11 3 1 213 22042484 22042701 8.390000e-77 298.0
15 TraesCS1A01G097300 chr4D 93.659 205 12 1 1 205 319701044 319701247 5.010000e-79 305.0
16 TraesCS1A01G097300 chr2B 93.237 207 12 2 1 206 691015819 691015614 1.800000e-78 303.0
17 TraesCS1A01G097300 chr2B 100.000 28 0 0 318 345 699289620 699289647 7.000000e-03 52.8
18 TraesCS1A01G097300 chr4B 90.991 222 20 0 1 222 139589867 139589646 2.330000e-77 300.0
19 TraesCS1A01G097300 chr5D 80.682 88 8 8 313 395 190484434 190484517 4.310000e-05 60.2
20 TraesCS1A01G097300 chr3B 96.774 31 1 0 314 344 295420927 295420957 7.000000e-03 52.8
21 TraesCS1A01G097300 chr2A 100.000 28 0 0 318 345 718244935 718244962 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G097300 chr1A 93400939 93404931 3992 True 7374.0 7374 100.0000 1 3993 1 chr1A.!!$R1 3992
1 TraesCS1A01G097300 chr1D 97921796 97925531 3735 True 2634.5 5121 93.3015 309 3988 2 chr1D.!!$R1 3679
2 TraesCS1A01G097300 chr1B 155403421 155407676 4255 False 1902.0 4728 91.2660 309 3988 3 chr1B.!!$F2 3679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.105408 GGCTTGGGCTTGGCATATTG 59.895 55.0 0.00 0.00 38.73 1.90 F
30 31 0.105408 GCTTGGGCTTGGCATATTGG 59.895 55.0 0.00 0.00 35.22 3.16 F
1405 1519 0.322456 TCGCCCTTGTTGCTAGCAAT 60.322 50.0 31.46 0.00 38.28 3.56 F
2257 2393 0.250989 TAAAGTCCCACGGCAAAGGG 60.251 55.0 0.39 0.39 46.90 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1338 1452 1.191647 CGGTAAATATGAAGCGGACGC 59.808 52.381 8.91 8.91 42.33 5.19 R
1557 1671 1.338890 GGAGAGGGAGTAGTTGGGGC 61.339 65.000 0.00 0.00 0.00 5.80 R
2667 2820 1.061131 CGTTGCAAAGCGTCTAGGATG 59.939 52.381 0.00 0.00 0.00 3.51 R
3230 3393 1.674651 GCACCTTCCCTTTCGGTCC 60.675 63.158 0.00 0.00 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.351054 CTGGACGGGCTTGGGCTT 62.351 66.667 0.00 0.00 38.73 4.35
21 22 4.659172 TGGACGGGCTTGGGCTTG 62.659 66.667 0.00 0.00 38.73 4.01
26 27 2.043046 GGGCTTGGGCTTGGCATA 60.043 61.111 0.00 0.00 38.73 3.14
27 28 1.458209 GGGCTTGGGCTTGGCATAT 60.458 57.895 0.00 0.00 38.73 1.78
28 29 1.050421 GGGCTTGGGCTTGGCATATT 61.050 55.000 0.00 0.00 38.73 1.28
29 30 0.105408 GGCTTGGGCTTGGCATATTG 59.895 55.000 0.00 0.00 38.73 1.90
30 31 0.105408 GCTTGGGCTTGGCATATTGG 59.895 55.000 0.00 0.00 35.22 3.16
31 32 0.105408 CTTGGGCTTGGCATATTGGC 59.895 55.000 0.00 0.00 44.03 4.52
43 44 5.888412 GGCATATTGGCATTTTAACGAAG 57.112 39.130 0.00 0.00 43.14 3.79
44 45 5.587289 GGCATATTGGCATTTTAACGAAGA 58.413 37.500 0.00 0.00 43.14 2.87
45 46 5.687285 GGCATATTGGCATTTTAACGAAGAG 59.313 40.000 0.00 0.00 43.14 2.85
46 47 5.687285 GCATATTGGCATTTTAACGAAGAGG 59.313 40.000 0.00 0.00 0.00 3.69
47 48 3.569250 TTGGCATTTTAACGAAGAGGC 57.431 42.857 0.00 0.00 0.00 4.70
48 49 1.816224 TGGCATTTTAACGAAGAGGCC 59.184 47.619 0.00 0.00 40.51 5.19
49 50 1.134367 GGCATTTTAACGAAGAGGCCC 59.866 52.381 0.00 0.00 34.17 5.80
50 51 1.816224 GCATTTTAACGAAGAGGCCCA 59.184 47.619 0.00 0.00 0.00 5.36
51 52 2.159379 GCATTTTAACGAAGAGGCCCAG 60.159 50.000 0.00 0.00 0.00 4.45
52 53 1.530323 TTTTAACGAAGAGGCCCAGC 58.470 50.000 0.00 0.00 0.00 4.85
84 85 3.596362 CCCTAAGGGCTTTTCAGGG 57.404 57.895 3.08 3.08 40.10 4.45
85 86 0.684479 CCCTAAGGGCTTTTCAGGGC 60.684 60.000 4.44 0.00 39.62 5.19
86 87 0.332972 CCTAAGGGCTTTTCAGGGCT 59.667 55.000 0.00 0.00 0.00 5.19
87 88 1.272704 CCTAAGGGCTTTTCAGGGCTT 60.273 52.381 0.00 0.00 0.00 4.35
88 89 2.529632 CTAAGGGCTTTTCAGGGCTTT 58.470 47.619 0.00 0.00 33.62 3.51
89 90 1.806496 AAGGGCTTTTCAGGGCTTTT 58.194 45.000 0.00 0.00 0.00 2.27
90 91 1.806496 AGGGCTTTTCAGGGCTTTTT 58.194 45.000 0.00 0.00 0.00 1.94
91 92 2.970987 AGGGCTTTTCAGGGCTTTTTA 58.029 42.857 0.00 0.00 0.00 1.52
92 93 2.632996 AGGGCTTTTCAGGGCTTTTTAC 59.367 45.455 0.00 0.00 0.00 2.01
93 94 2.289444 GGGCTTTTCAGGGCTTTTTACC 60.289 50.000 0.00 0.00 0.00 2.85
94 95 2.367241 GGCTTTTCAGGGCTTTTTACCA 59.633 45.455 0.00 0.00 0.00 3.25
95 96 3.554960 GGCTTTTCAGGGCTTTTTACCAG 60.555 47.826 0.00 0.00 0.00 4.00
96 97 3.320826 GCTTTTCAGGGCTTTTTACCAGA 59.679 43.478 0.00 0.00 0.00 3.86
97 98 4.021104 GCTTTTCAGGGCTTTTTACCAGAT 60.021 41.667 0.00 0.00 0.00 2.90
98 99 5.467035 TTTTCAGGGCTTTTTACCAGATG 57.533 39.130 0.00 0.00 0.00 2.90
99 100 4.380843 TTCAGGGCTTTTTACCAGATGA 57.619 40.909 0.00 0.00 0.00 2.92
100 101 3.955471 TCAGGGCTTTTTACCAGATGAG 58.045 45.455 0.00 0.00 0.00 2.90
101 102 2.424956 CAGGGCTTTTTACCAGATGAGC 59.575 50.000 0.00 0.00 0.00 4.26
102 103 1.751351 GGGCTTTTTACCAGATGAGCC 59.249 52.381 3.67 3.67 46.81 4.70
103 104 1.401905 GGCTTTTTACCAGATGAGCCG 59.598 52.381 0.00 0.00 40.10 5.52
104 105 1.401905 GCTTTTTACCAGATGAGCCGG 59.598 52.381 0.00 0.00 0.00 6.13
105 106 2.017049 CTTTTTACCAGATGAGCCGGG 58.983 52.381 2.18 0.00 0.00 5.73
106 107 0.393808 TTTTACCAGATGAGCCGGGC 60.394 55.000 12.11 12.11 0.00 6.13
107 108 1.271840 TTTACCAGATGAGCCGGGCT 61.272 55.000 24.13 24.13 43.88 5.19
108 109 1.271840 TTACCAGATGAGCCGGGCTT 61.272 55.000 24.71 8.19 39.88 4.35
109 110 1.971505 TACCAGATGAGCCGGGCTTG 61.972 60.000 24.71 16.89 39.88 4.01
110 111 2.515523 CAGATGAGCCGGGCTTGG 60.516 66.667 24.71 7.42 39.88 3.61
111 112 3.801997 AGATGAGCCGGGCTTGGG 61.802 66.667 24.71 0.00 39.88 4.12
118 119 2.600173 CCGGGCTTGGGCTTGAAA 60.600 61.111 0.00 0.00 38.73 2.69
119 120 2.206536 CCGGGCTTGGGCTTGAAAA 61.207 57.895 0.00 0.00 38.73 2.29
135 136 6.743575 CTTGAAAAGTAGGACCAATGGTAG 57.256 41.667 4.23 0.00 39.70 3.18
136 137 5.174037 TGAAAAGTAGGACCAATGGTAGG 57.826 43.478 4.23 0.00 35.25 3.18
137 138 4.018779 TGAAAAGTAGGACCAATGGTAGGG 60.019 45.833 4.23 0.00 35.25 3.53
138 139 1.508256 AGTAGGACCAATGGTAGGGC 58.492 55.000 4.23 0.00 35.25 5.19
141 142 4.986467 GACCAATGGTAGGGCCTG 57.014 61.111 18.53 0.00 35.25 4.85
142 143 1.227383 GACCAATGGTAGGGCCTGG 59.773 63.158 18.53 11.33 38.26 4.45
143 144 2.284515 GACCAATGGTAGGGCCTGGG 62.285 65.000 18.53 10.21 37.01 4.45
144 145 2.006415 CCAATGGTAGGGCCTGGGA 61.006 63.158 18.53 0.00 38.35 4.37
145 146 1.533711 CAATGGTAGGGCCTGGGAG 59.466 63.158 18.53 0.00 38.35 4.30
146 147 1.697754 AATGGTAGGGCCTGGGAGG 60.698 63.158 18.53 0.00 38.80 4.30
147 148 3.739080 ATGGTAGGGCCTGGGAGGG 62.739 68.421 18.53 0.00 35.37 4.30
206 207 3.271250 GCCCATGGCCAGGTATATG 57.729 57.895 17.55 5.65 44.06 1.78
207 208 0.405585 GCCCATGGCCAGGTATATGT 59.594 55.000 17.55 0.00 44.06 2.29
208 209 1.203050 GCCCATGGCCAGGTATATGTT 60.203 52.381 17.55 0.00 44.06 2.71
209 210 2.795329 CCCATGGCCAGGTATATGTTC 58.205 52.381 17.55 0.00 0.00 3.18
210 211 2.108075 CCCATGGCCAGGTATATGTTCA 59.892 50.000 17.55 0.00 0.00 3.18
211 212 3.436325 CCCATGGCCAGGTATATGTTCAA 60.436 47.826 17.55 0.00 0.00 2.69
212 213 3.569701 CCATGGCCAGGTATATGTTCAAC 59.430 47.826 17.55 0.00 0.00 3.18
213 214 4.464008 CATGGCCAGGTATATGTTCAACT 58.536 43.478 13.05 0.00 0.00 3.16
214 215 5.456042 CCATGGCCAGGTATATGTTCAACTA 60.456 44.000 17.55 0.00 0.00 2.24
215 216 5.031066 TGGCCAGGTATATGTTCAACTAC 57.969 43.478 0.00 0.00 0.00 2.73
216 217 4.141574 TGGCCAGGTATATGTTCAACTACC 60.142 45.833 0.00 0.00 34.99 3.18
217 218 4.141574 GGCCAGGTATATGTTCAACTACCA 60.142 45.833 0.00 0.00 36.83 3.25
218 219 5.433526 GCCAGGTATATGTTCAACTACCAA 58.566 41.667 7.11 0.00 36.83 3.67
219 220 5.883673 GCCAGGTATATGTTCAACTACCAAA 59.116 40.000 7.11 0.00 36.83 3.28
220 221 6.376018 GCCAGGTATATGTTCAACTACCAAAA 59.624 38.462 7.11 0.00 36.83 2.44
221 222 7.068226 GCCAGGTATATGTTCAACTACCAAAAT 59.932 37.037 7.11 0.00 36.83 1.82
222 223 8.405531 CCAGGTATATGTTCAACTACCAAAATG 58.594 37.037 7.11 0.00 36.83 2.32
223 224 8.956426 CAGGTATATGTTCAACTACCAAAATGT 58.044 33.333 7.11 0.00 36.83 2.71
224 225 8.956426 AGGTATATGTTCAACTACCAAAATGTG 58.044 33.333 7.11 0.00 36.83 3.21
225 226 8.952278 GGTATATGTTCAACTACCAAAATGTGA 58.048 33.333 0.55 0.00 34.91 3.58
229 230 6.744112 TGTTCAACTACCAAAATGTGATTCC 58.256 36.000 0.00 0.00 0.00 3.01
230 231 6.549364 TGTTCAACTACCAAAATGTGATTCCT 59.451 34.615 0.00 0.00 0.00 3.36
231 232 6.817765 TCAACTACCAAAATGTGATTCCTC 57.182 37.500 0.00 0.00 0.00 3.71
232 233 6.303054 TCAACTACCAAAATGTGATTCCTCA 58.697 36.000 0.00 0.00 0.00 3.86
233 234 6.775142 TCAACTACCAAAATGTGATTCCTCAA 59.225 34.615 0.00 0.00 31.85 3.02
234 235 7.286546 TCAACTACCAAAATGTGATTCCTCAAA 59.713 33.333 0.00 0.00 31.85 2.69
235 236 6.981722 ACTACCAAAATGTGATTCCTCAAAC 58.018 36.000 0.00 0.00 31.85 2.93
236 237 6.777580 ACTACCAAAATGTGATTCCTCAAACT 59.222 34.615 0.00 0.00 31.85 2.66
237 238 6.089249 ACCAAAATGTGATTCCTCAAACTC 57.911 37.500 0.00 0.00 31.85 3.01
238 239 5.598005 ACCAAAATGTGATTCCTCAAACTCA 59.402 36.000 0.00 0.00 31.85 3.41
239 240 6.268387 ACCAAAATGTGATTCCTCAAACTCAT 59.732 34.615 0.00 0.00 31.85 2.90
240 241 7.156673 CCAAAATGTGATTCCTCAAACTCATT 58.843 34.615 0.00 0.00 31.85 2.57
241 242 7.330208 CCAAAATGTGATTCCTCAAACTCATTC 59.670 37.037 0.00 0.00 31.85 2.67
242 243 7.528996 AAATGTGATTCCTCAAACTCATTCA 57.471 32.000 0.00 0.00 31.85 2.57
243 244 7.528996 AATGTGATTCCTCAAACTCATTCAA 57.471 32.000 0.00 0.00 31.85 2.69
244 245 7.713734 ATGTGATTCCTCAAACTCATTCAAT 57.286 32.000 0.00 0.00 31.85 2.57
245 246 6.916440 TGTGATTCCTCAAACTCATTCAATG 58.084 36.000 0.00 0.00 31.85 2.82
246 247 6.071784 TGTGATTCCTCAAACTCATTCAATGG 60.072 38.462 0.00 0.00 31.85 3.16
247 248 6.151648 GTGATTCCTCAAACTCATTCAATGGA 59.848 38.462 0.00 0.00 31.85 3.41
248 249 6.893554 TGATTCCTCAAACTCATTCAATGGAT 59.106 34.615 0.00 0.00 0.00 3.41
249 250 6.764308 TTCCTCAAACTCATTCAATGGATC 57.236 37.500 0.00 0.00 0.00 3.36
250 251 5.818887 TCCTCAAACTCATTCAATGGATCA 58.181 37.500 0.00 0.00 0.00 2.92
251 252 6.247676 TCCTCAAACTCATTCAATGGATCAA 58.752 36.000 0.00 0.00 0.00 2.57
252 253 6.376299 TCCTCAAACTCATTCAATGGATCAAG 59.624 38.462 0.00 0.00 0.00 3.02
253 254 6.376299 CCTCAAACTCATTCAATGGATCAAGA 59.624 38.462 0.00 0.00 0.00 3.02
254 255 7.149569 TCAAACTCATTCAATGGATCAAGAC 57.850 36.000 0.00 0.00 0.00 3.01
255 256 6.716173 TCAAACTCATTCAATGGATCAAGACA 59.284 34.615 0.00 0.00 0.00 3.41
256 257 6.506500 AACTCATTCAATGGATCAAGACAC 57.493 37.500 0.00 0.00 0.00 3.67
257 258 5.563592 ACTCATTCAATGGATCAAGACACA 58.436 37.500 0.00 0.00 0.00 3.72
258 259 6.005823 ACTCATTCAATGGATCAAGACACAA 58.994 36.000 0.00 0.00 0.00 3.33
259 260 6.491062 ACTCATTCAATGGATCAAGACACAAA 59.509 34.615 0.00 0.00 0.00 2.83
260 261 6.680810 TCATTCAATGGATCAAGACACAAAC 58.319 36.000 0.00 0.00 0.00 2.93
261 262 6.491062 TCATTCAATGGATCAAGACACAAACT 59.509 34.615 0.00 0.00 0.00 2.66
262 263 5.947228 TCAATGGATCAAGACACAAACTC 57.053 39.130 0.00 0.00 0.00 3.01
263 264 5.624159 TCAATGGATCAAGACACAAACTCT 58.376 37.500 0.00 0.00 0.00 3.24
264 265 6.768483 TCAATGGATCAAGACACAAACTCTA 58.232 36.000 0.00 0.00 0.00 2.43
265 266 7.397221 TCAATGGATCAAGACACAAACTCTAT 58.603 34.615 0.00 0.00 0.00 1.98
266 267 7.884877 TCAATGGATCAAGACACAAACTCTATT 59.115 33.333 0.00 0.00 0.00 1.73
267 268 9.166173 CAATGGATCAAGACACAAACTCTATTA 57.834 33.333 0.00 0.00 0.00 0.98
268 269 9.739276 AATGGATCAAGACACAAACTCTATTAA 57.261 29.630 0.00 0.00 0.00 1.40
269 270 8.777865 TGGATCAAGACACAAACTCTATTAAG 57.222 34.615 0.00 0.00 0.00 1.85
270 271 7.334421 TGGATCAAGACACAAACTCTATTAAGC 59.666 37.037 0.00 0.00 0.00 3.09
271 272 6.706055 TCAAGACACAAACTCTATTAAGCG 57.294 37.500 0.00 0.00 0.00 4.68
272 273 6.220930 TCAAGACACAAACTCTATTAAGCGT 58.779 36.000 0.00 0.00 0.00 5.07
273 274 6.145534 TCAAGACACAAACTCTATTAAGCGTG 59.854 38.462 0.00 0.00 0.00 5.34
274 275 5.779922 AGACACAAACTCTATTAAGCGTGA 58.220 37.500 0.00 0.00 0.00 4.35
275 276 5.634020 AGACACAAACTCTATTAAGCGTGAC 59.366 40.000 0.00 0.00 0.00 3.67
276 277 5.539048 ACACAAACTCTATTAAGCGTGACT 58.461 37.500 0.00 0.00 0.00 3.41
277 278 6.684686 ACACAAACTCTATTAAGCGTGACTA 58.315 36.000 0.00 0.00 0.00 2.59
278 279 7.149973 ACACAAACTCTATTAAGCGTGACTAA 58.850 34.615 0.00 0.00 0.00 2.24
279 280 7.328737 ACACAAACTCTATTAAGCGTGACTAAG 59.671 37.037 0.00 0.00 0.00 2.18
280 281 7.328737 CACAAACTCTATTAAGCGTGACTAAGT 59.671 37.037 0.00 0.00 0.00 2.24
281 282 8.517878 ACAAACTCTATTAAGCGTGACTAAGTA 58.482 33.333 0.00 0.00 0.00 2.24
282 283 9.517609 CAAACTCTATTAAGCGTGACTAAGTAT 57.482 33.333 0.00 0.00 0.00 2.12
285 286 8.505625 ACTCTATTAAGCGTGACTAAGTATAGC 58.494 37.037 0.00 0.00 31.96 2.97
286 287 8.387190 TCTATTAAGCGTGACTAAGTATAGCA 57.613 34.615 0.00 0.00 31.96 3.49
287 288 8.843262 TCTATTAAGCGTGACTAAGTATAGCAA 58.157 33.333 0.00 0.00 31.96 3.91
288 289 9.459640 CTATTAAGCGTGACTAAGTATAGCAAA 57.540 33.333 0.00 0.00 31.96 3.68
289 290 8.712285 ATTAAGCGTGACTAAGTATAGCAAAA 57.288 30.769 0.00 0.00 31.96 2.44
290 291 8.712285 TTAAGCGTGACTAAGTATAGCAAAAT 57.288 30.769 0.00 0.00 31.96 1.82
291 292 9.806203 TTAAGCGTGACTAAGTATAGCAAAATA 57.194 29.630 0.00 0.00 31.96 1.40
292 293 8.712285 AAGCGTGACTAAGTATAGCAAAATAA 57.288 30.769 0.00 0.00 31.96 1.40
293 294 8.354011 AGCGTGACTAAGTATAGCAAAATAAG 57.646 34.615 0.00 0.00 31.96 1.73
294 295 7.980099 AGCGTGACTAAGTATAGCAAAATAAGT 59.020 33.333 0.00 0.00 31.96 2.24
295 296 9.241317 GCGTGACTAAGTATAGCAAAATAAGTA 57.759 33.333 0.00 0.00 31.96 2.24
299 300 9.708092 GACTAAGTATAGCAAAATAAGTAGGGG 57.292 37.037 0.00 0.00 31.96 4.79
300 301 8.657712 ACTAAGTATAGCAAAATAAGTAGGGGG 58.342 37.037 0.00 0.00 31.96 5.40
301 302 7.701257 AAGTATAGCAAAATAAGTAGGGGGA 57.299 36.000 0.00 0.00 0.00 4.81
302 303 7.317722 AGTATAGCAAAATAAGTAGGGGGAG 57.682 40.000 0.00 0.00 0.00 4.30
303 304 7.080353 AGTATAGCAAAATAAGTAGGGGGAGA 58.920 38.462 0.00 0.00 0.00 3.71
304 305 4.779993 AGCAAAATAAGTAGGGGGAGAG 57.220 45.455 0.00 0.00 0.00 3.20
305 306 4.371681 AGCAAAATAAGTAGGGGGAGAGA 58.628 43.478 0.00 0.00 0.00 3.10
306 307 4.788617 AGCAAAATAAGTAGGGGGAGAGAA 59.211 41.667 0.00 0.00 0.00 2.87
307 308 4.882427 GCAAAATAAGTAGGGGGAGAGAAC 59.118 45.833 0.00 0.00 0.00 3.01
311 312 3.691698 AAGTAGGGGGAGAGAACTAGG 57.308 52.381 0.00 0.00 0.00 3.02
366 367 8.336235 AGGATTGTAAGGAACATGGATTTAAGA 58.664 33.333 0.00 0.00 38.10 2.10
390 392 2.022195 CAAGATCAGGTCATGCAAGGG 58.978 52.381 0.00 0.00 0.00 3.95
403 486 5.008712 GTCATGCAAGGGTAGGCTTAAATAC 59.991 44.000 0.00 0.00 0.00 1.89
411 494 9.708092 CAAGGGTAGGCTTAAATACTATCTAAC 57.292 37.037 0.00 0.00 0.00 2.34
441 524 7.280205 ACATAGCAGTTAAATCGAAGGGTTTAG 59.720 37.037 0.00 0.00 0.00 1.85
447 530 8.726988 CAGTTAAATCGAAGGGTTTAGAATCAA 58.273 33.333 0.00 0.00 0.00 2.57
453 536 4.395231 CGAAGGGTTTAGAATCAAGGAACC 59.605 45.833 0.00 0.00 39.16 3.62
460 543 7.110155 GGTTTAGAATCAAGGAACCATGAGTA 58.890 38.462 0.00 0.00 39.56 2.59
462 545 4.759782 AGAATCAAGGAACCATGAGTACG 58.240 43.478 0.00 0.00 0.00 3.67
464 547 5.129485 AGAATCAAGGAACCATGAGTACGAT 59.871 40.000 0.00 0.00 0.00 3.73
502 585 7.606349 AGCAACAAAAAGAAAGAAAAGAGACT 58.394 30.769 0.00 0.00 0.00 3.24
509 592 7.888250 AAAGAAAGAAAAGAGACTGAACCAT 57.112 32.000 0.00 0.00 0.00 3.55
518 601 8.738645 AAAAGAGACTGAACCATATTATCACC 57.261 34.615 0.00 0.00 0.00 4.02
525 608 4.806775 TGAACCATATTATCACCAACGTCG 59.193 41.667 0.00 0.00 0.00 5.12
540 623 1.107538 CGTCGGCAGATAAGGAGGGA 61.108 60.000 0.00 0.00 0.00 4.20
546 629 3.697166 GGCAGATAAGGAGGGACAAAAA 58.303 45.455 0.00 0.00 0.00 1.94
553 636 1.285950 GAGGGACAAAAAGCGGTGC 59.714 57.895 0.00 0.00 0.00 5.01
555 638 2.050442 GGACAAAAAGCGGTGCGG 60.050 61.111 0.00 0.00 0.00 5.69
685 775 3.691609 GCAGATAAGGAGGGACAAACAAG 59.308 47.826 0.00 0.00 0.00 3.16
687 777 3.267031 AGATAAGGAGGGACAAACAAGGG 59.733 47.826 0.00 0.00 0.00 3.95
689 779 0.478507 AGGAGGGACAAACAAGGGTG 59.521 55.000 0.00 0.00 0.00 4.61
693 783 2.040412 GAGGGACAAACAAGGGTGATCT 59.960 50.000 0.00 0.00 0.00 2.75
695 785 3.264450 AGGGACAAACAAGGGTGATCTAG 59.736 47.826 0.00 0.00 0.00 2.43
696 786 3.263425 GGGACAAACAAGGGTGATCTAGA 59.737 47.826 0.00 0.00 0.00 2.43
737 839 5.740838 GGCAACTACAAGTTTATTTTCGC 57.259 39.130 0.00 0.00 36.03 4.70
739 841 5.458015 GCAACTACAAGTTTATTTTCGCCT 58.542 37.500 0.00 0.00 36.03 5.52
740 842 5.918576 GCAACTACAAGTTTATTTTCGCCTT 59.081 36.000 0.00 0.00 36.03 4.35
741 843 7.079475 GCAACTACAAGTTTATTTTCGCCTTA 58.921 34.615 0.00 0.00 36.03 2.69
783 886 4.600012 AAGAGATGGAAACGCATTAACG 57.400 40.909 0.00 0.00 39.50 3.18
800 903 0.878416 ACGCGCATTAACACCAACAT 59.122 45.000 5.73 0.00 0.00 2.71
806 909 3.611293 CGCATTAACACCAACATCAGCAA 60.611 43.478 0.00 0.00 0.00 3.91
820 923 4.263905 ACATCAGCAAATAAGGAGGGACAA 60.264 41.667 0.00 0.00 0.00 3.18
825 928 5.011023 CAGCAAATAAGGAGGGACAAAAAGT 59.989 40.000 0.00 0.00 0.00 2.66
830 933 1.133482 AGGAGGGACAAAAAGTGGTGG 60.133 52.381 0.00 0.00 0.00 4.61
831 934 1.133606 GGAGGGACAAAAAGTGGTGGA 60.134 52.381 0.00 0.00 0.00 4.02
832 935 2.490902 GGAGGGACAAAAAGTGGTGGAT 60.491 50.000 0.00 0.00 0.00 3.41
848 951 3.808174 GGTGGATCAAAGTAGATAACGGC 59.192 47.826 0.00 0.00 0.00 5.68
913 1016 5.007332 ACATGTTTCGTCACTCCTACAAAAC 59.993 40.000 0.00 0.00 0.00 2.43
917 1023 1.269936 CGTCACTCCTACAAAACGGGT 60.270 52.381 0.00 0.00 0.00 5.28
931 1037 4.335400 AAACGGGTTGAGCATTCATTTT 57.665 36.364 0.00 0.00 32.27 1.82
972 1078 4.522789 ACAAAAATTCCGTGCTAGGATTGT 59.477 37.500 10.07 10.07 40.48 2.71
980 1086 5.353938 TCCGTGCTAGGATTGTATGTTTAC 58.646 41.667 0.00 0.00 34.92 2.01
994 1100 9.661563 ATTGTATGTTTACGATCTTTACCAGAA 57.338 29.630 0.00 0.00 34.16 3.02
995 1101 9.491675 TTGTATGTTTACGATCTTTACCAGAAA 57.508 29.630 0.00 0.00 34.16 2.52
999 1105 9.840427 ATGTTTACGATCTTTACCAGAAATTTG 57.160 29.630 0.00 0.00 34.16 2.32
1000 1106 9.058174 TGTTTACGATCTTTACCAGAAATTTGA 57.942 29.630 0.00 0.00 34.16 2.69
1003 1109 7.088589 ACGATCTTTACCAGAAATTTGATGG 57.911 36.000 14.69 14.69 40.10 3.51
1004 1110 6.884295 ACGATCTTTACCAGAAATTTGATGGA 59.116 34.615 20.70 6.57 37.54 3.41
1005 1111 7.148239 ACGATCTTTACCAGAAATTTGATGGAC 60.148 37.037 20.70 0.00 37.54 4.02
1006 1112 7.066284 CGATCTTTACCAGAAATTTGATGGACT 59.934 37.037 20.70 6.68 37.54 3.85
1007 1113 8.655935 ATCTTTACCAGAAATTTGATGGACTT 57.344 30.769 20.70 6.12 37.54 3.01
1008 1114 8.477419 TCTTTACCAGAAATTTGATGGACTTT 57.523 30.769 20.70 5.84 37.54 2.66
1009 1115 8.923270 TCTTTACCAGAAATTTGATGGACTTTT 58.077 29.630 20.70 5.56 37.54 2.27
1010 1116 9.196552 CTTTACCAGAAATTTGATGGACTTTTC 57.803 33.333 20.70 0.00 37.54 2.29
1011 1117 6.983906 ACCAGAAATTTGATGGACTTTTCT 57.016 33.333 20.70 0.00 37.17 2.52
1012 1118 6.752168 ACCAGAAATTTGATGGACTTTTCTG 58.248 36.000 20.70 13.90 46.49 3.02
1013 1119 5.636543 CCAGAAATTTGATGGACTTTTCTGC 59.363 40.000 14.95 0.00 45.99 4.26
1014 1120 5.636543 CAGAAATTTGATGGACTTTTCTGCC 59.363 40.000 9.86 0.00 43.41 4.85
1015 1121 5.541484 AGAAATTTGATGGACTTTTCTGCCT 59.459 36.000 0.00 0.00 35.81 4.75
1016 1122 5.397142 AATTTGATGGACTTTTCTGCCTC 57.603 39.130 0.00 0.00 0.00 4.70
1017 1123 3.507162 TTGATGGACTTTTCTGCCTCA 57.493 42.857 0.00 0.00 0.00 3.86
1057 1163 4.629634 TCAACTATGTTGTTGCTACGATGG 59.370 41.667 9.78 0.00 44.83 3.51
1077 1183 9.950680 ACGATGGTATCAACAAATTTCAATATC 57.049 29.630 0.00 0.00 0.00 1.63
1115 1229 9.672673 AGCAACATAGCTACTATAAAATATGGG 57.327 33.333 0.00 0.00 44.50 4.00
1116 1230 9.449719 GCAACATAGCTACTATAAAATATGGGT 57.550 33.333 0.00 0.00 0.00 4.51
1294 1408 3.383620 TGTTTTCATGCTCGGCAAAAT 57.616 38.095 2.68 0.00 43.62 1.82
1358 1472 1.191647 GCGTCCGCTTCATATTTACCG 59.808 52.381 4.10 0.00 38.26 4.02
1405 1519 0.322456 TCGCCCTTGTTGCTAGCAAT 60.322 50.000 31.46 0.00 38.28 3.56
1510 1624 5.620879 GCCTAGCCAGAGATCAAAAACAAAG 60.621 44.000 0.00 0.00 0.00 2.77
1557 1671 2.937959 CTTCTCCTCTCCCCTCCCCG 62.938 70.000 0.00 0.00 0.00 5.73
1574 1688 1.686110 CGCCCCAACTACTCCCTCT 60.686 63.158 0.00 0.00 0.00 3.69
2031 2160 2.971997 GCGGTTCATACTGCGATCA 58.028 52.632 0.00 0.00 45.99 2.92
2101 2231 3.955471 TCATTAGAGCCTCTGGTTTTGG 58.045 45.455 3.98 0.00 0.00 3.28
2257 2393 0.250989 TAAAGTCCCACGGCAAAGGG 60.251 55.000 0.39 0.39 46.90 3.95
2494 2631 4.051237 GTTTTTCACTTCATTCTGGCACC 58.949 43.478 0.00 0.00 0.00 5.01
2525 2662 4.446371 CACCCATCAACCAGTAATCTCTC 58.554 47.826 0.00 0.00 0.00 3.20
2532 2669 7.829211 CCATCAACCAGTAATCTCTCCTTTTTA 59.171 37.037 0.00 0.00 0.00 1.52
2597 2749 3.025262 GGAGTTAGTGGTCCTAGTCTGG 58.975 54.545 0.00 0.00 0.00 3.86
2667 2820 8.871686 ATTGTGTATTGAACTTTTTCACTTCC 57.128 30.769 0.00 0.00 41.64 3.46
2671 2824 7.595130 GTGTATTGAACTTTTTCACTTCCATCC 59.405 37.037 0.00 0.00 41.64 3.51
2746 2899 1.272490 CTAGGTCTCGACAACAAGCCA 59.728 52.381 0.00 0.00 0.00 4.75
2759 2912 0.820891 CAAGCCACAGAACCAGCAGT 60.821 55.000 0.00 0.00 0.00 4.40
3016 3178 3.301554 CCCACAATTGGTGCGCCA 61.302 61.111 16.89 16.89 46.50 5.69
3230 3393 0.943835 TGTCAGTGTGTCGCATTCGG 60.944 55.000 0.00 0.00 36.13 4.30
3304 3467 2.079158 CTGGTCAGTGGCTGTATGTTG 58.921 52.381 0.00 0.00 32.61 3.33
3305 3468 1.419762 TGGTCAGTGGCTGTATGTTGT 59.580 47.619 0.00 0.00 32.61 3.32
3307 3470 2.484264 GGTCAGTGGCTGTATGTTGTTC 59.516 50.000 0.00 0.00 32.61 3.18
3308 3471 3.403038 GTCAGTGGCTGTATGTTGTTCT 58.597 45.455 0.00 0.00 32.61 3.01
3309 3472 3.187227 GTCAGTGGCTGTATGTTGTTCTG 59.813 47.826 0.00 0.00 32.61 3.02
3310 3473 3.141398 CAGTGGCTGTATGTTGTTCTGT 58.859 45.455 0.00 0.00 0.00 3.41
3311 3474 3.187227 CAGTGGCTGTATGTTGTTCTGTC 59.813 47.826 0.00 0.00 0.00 3.51
3312 3475 3.138304 GTGGCTGTATGTTGTTCTGTCA 58.862 45.455 0.00 0.00 0.00 3.58
3323 3486 2.256306 TGTTCTGTCATGGTAGGCTCA 58.744 47.619 0.00 0.00 0.00 4.26
3669 3833 2.825532 ACCACCATGAAATTACACCTGC 59.174 45.455 0.00 0.00 0.00 4.85
3673 3837 4.644234 CACCATGAAATTACACCTGCCATA 59.356 41.667 0.00 0.00 0.00 2.74
3816 3982 0.538584 TGCTGCCTCTCTACCATGTG 59.461 55.000 0.00 0.00 0.00 3.21
3817 3983 0.813210 GCTGCCTCTCTACCATGTGC 60.813 60.000 0.00 0.00 0.00 4.57
3819 3985 1.227380 GCCTCTCTACCATGTGCGG 60.227 63.158 0.00 0.00 0.00 5.69
3877 4544 9.906660 TTACAACCATCTAATCATCACAAAAAC 57.093 29.630 0.00 0.00 0.00 2.43
3962 4632 3.507162 TTCTCCAGGACTTTTCATGCA 57.493 42.857 0.00 0.00 31.87 3.96
3984 4654 2.242043 AGCATGGTTTCCCTGAACAAG 58.758 47.619 0.00 0.00 0.00 3.16
3985 4655 1.337167 GCATGGTTTCCCTGAACAAGC 60.337 52.381 0.00 0.00 0.00 4.01
3986 4656 1.962807 CATGGTTTCCCTGAACAAGCA 59.037 47.619 0.00 0.00 0.00 3.91
3987 4657 2.380064 TGGTTTCCCTGAACAAGCAT 57.620 45.000 0.00 0.00 0.00 3.79
3988 4658 3.517296 TGGTTTCCCTGAACAAGCATA 57.483 42.857 0.00 0.00 0.00 3.14
3989 4659 4.046286 TGGTTTCCCTGAACAAGCATAT 57.954 40.909 0.00 0.00 0.00 1.78
3990 4660 3.763360 TGGTTTCCCTGAACAAGCATATG 59.237 43.478 0.00 0.00 0.00 1.78
3991 4661 3.763897 GGTTTCCCTGAACAAGCATATGT 59.236 43.478 4.29 0.00 34.24 2.29
3992 4662 4.380867 GGTTTCCCTGAACAAGCATATGTG 60.381 45.833 4.29 0.00 32.81 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.351054 AAGCCCAAGCCCGTCCAG 62.351 66.667 0.00 0.00 41.25 3.86
4 5 4.659172 CAAGCCCAAGCCCGTCCA 62.659 66.667 0.00 0.00 41.25 4.02
9 10 1.050421 AATATGCCAAGCCCAAGCCC 61.050 55.000 0.00 0.00 41.25 5.19
10 11 0.105408 CAATATGCCAAGCCCAAGCC 59.895 55.000 0.00 0.00 41.25 4.35
11 12 0.105408 CCAATATGCCAAGCCCAAGC 59.895 55.000 0.00 0.00 40.32 4.01
12 13 0.105408 GCCAATATGCCAAGCCCAAG 59.895 55.000 0.00 0.00 0.00 3.61
13 14 0.616964 TGCCAATATGCCAAGCCCAA 60.617 50.000 0.00 0.00 0.00 4.12
14 15 0.398806 ATGCCAATATGCCAAGCCCA 60.399 50.000 0.00 0.00 0.00 5.36
15 16 0.760572 AATGCCAATATGCCAAGCCC 59.239 50.000 0.00 0.00 0.00 5.19
16 17 2.625695 AAATGCCAATATGCCAAGCC 57.374 45.000 0.00 0.00 0.00 4.35
17 18 4.025813 CGTTAAAATGCCAATATGCCAAGC 60.026 41.667 0.00 0.00 0.00 4.01
18 19 5.347342 TCGTTAAAATGCCAATATGCCAAG 58.653 37.500 0.00 0.00 0.00 3.61
19 20 5.330455 TCGTTAAAATGCCAATATGCCAA 57.670 34.783 0.00 0.00 0.00 4.52
20 21 4.991153 TCGTTAAAATGCCAATATGCCA 57.009 36.364 0.00 0.00 0.00 4.92
21 22 5.587289 TCTTCGTTAAAATGCCAATATGCC 58.413 37.500 0.00 0.00 0.00 4.40
22 23 5.687285 CCTCTTCGTTAAAATGCCAATATGC 59.313 40.000 0.00 0.00 0.00 3.14
23 24 5.687285 GCCTCTTCGTTAAAATGCCAATATG 59.313 40.000 0.00 0.00 0.00 1.78
24 25 5.221244 GGCCTCTTCGTTAAAATGCCAATAT 60.221 40.000 0.00 0.00 37.58 1.28
25 26 4.097286 GGCCTCTTCGTTAAAATGCCAATA 59.903 41.667 0.00 0.00 37.58 1.90
26 27 3.119137 GGCCTCTTCGTTAAAATGCCAAT 60.119 43.478 0.00 0.00 37.58 3.16
27 28 2.230266 GGCCTCTTCGTTAAAATGCCAA 59.770 45.455 0.00 0.00 37.58 4.52
28 29 1.816224 GGCCTCTTCGTTAAAATGCCA 59.184 47.619 0.00 0.00 37.58 4.92
29 30 1.134367 GGGCCTCTTCGTTAAAATGCC 59.866 52.381 0.84 0.00 36.92 4.40
30 31 1.816224 TGGGCCTCTTCGTTAAAATGC 59.184 47.619 4.53 0.00 0.00 3.56
31 32 2.159379 GCTGGGCCTCTTCGTTAAAATG 60.159 50.000 4.53 0.00 0.00 2.32
32 33 2.092323 GCTGGGCCTCTTCGTTAAAAT 58.908 47.619 4.53 0.00 0.00 1.82
33 34 1.530323 GCTGGGCCTCTTCGTTAAAA 58.470 50.000 4.53 0.00 0.00 1.52
34 35 0.322187 GGCTGGGCCTCTTCGTTAAA 60.322 55.000 4.53 0.00 46.69 1.52
35 36 1.298667 GGCTGGGCCTCTTCGTTAA 59.701 57.895 4.53 0.00 46.69 2.01
36 37 2.987125 GGCTGGGCCTCTTCGTTA 59.013 61.111 4.53 0.00 46.69 3.18
67 68 0.332972 AGCCCTGAAAAGCCCTTAGG 59.667 55.000 0.00 0.00 0.00 2.69
68 69 2.222227 AAGCCCTGAAAAGCCCTTAG 57.778 50.000 0.00 0.00 0.00 2.18
69 70 2.694616 AAAGCCCTGAAAAGCCCTTA 57.305 45.000 0.00 0.00 0.00 2.69
70 71 1.806496 AAAAGCCCTGAAAAGCCCTT 58.194 45.000 0.00 0.00 0.00 3.95
71 72 1.806496 AAAAAGCCCTGAAAAGCCCT 58.194 45.000 0.00 0.00 0.00 5.19
72 73 2.289444 GGTAAAAAGCCCTGAAAAGCCC 60.289 50.000 0.00 0.00 0.00 5.19
73 74 2.367241 TGGTAAAAAGCCCTGAAAAGCC 59.633 45.455 0.00 0.00 0.00 4.35
74 75 3.320826 TCTGGTAAAAAGCCCTGAAAAGC 59.679 43.478 0.00 0.00 0.00 3.51
75 76 5.243730 TCATCTGGTAAAAAGCCCTGAAAAG 59.756 40.000 0.00 0.00 0.00 2.27
76 77 5.144100 TCATCTGGTAAAAAGCCCTGAAAA 58.856 37.500 0.00 0.00 0.00 2.29
77 78 4.735369 TCATCTGGTAAAAAGCCCTGAAA 58.265 39.130 0.00 0.00 0.00 2.69
78 79 4.335416 CTCATCTGGTAAAAAGCCCTGAA 58.665 43.478 0.00 0.00 0.00 3.02
79 80 3.873801 GCTCATCTGGTAAAAAGCCCTGA 60.874 47.826 0.00 0.00 0.00 3.86
80 81 2.424956 GCTCATCTGGTAAAAAGCCCTG 59.575 50.000 0.00 0.00 0.00 4.45
81 82 2.621668 GGCTCATCTGGTAAAAAGCCCT 60.622 50.000 0.00 0.00 42.75 5.19
82 83 1.751351 GGCTCATCTGGTAAAAAGCCC 59.249 52.381 0.00 0.00 42.75 5.19
83 84 1.401905 CGGCTCATCTGGTAAAAAGCC 59.598 52.381 1.10 1.10 44.60 4.35
84 85 1.401905 CCGGCTCATCTGGTAAAAAGC 59.598 52.381 0.00 0.00 36.43 3.51
85 86 2.017049 CCCGGCTCATCTGGTAAAAAG 58.983 52.381 0.00 0.00 39.73 2.27
86 87 1.953311 GCCCGGCTCATCTGGTAAAAA 60.953 52.381 0.71 0.00 39.73 1.94
87 88 0.393808 GCCCGGCTCATCTGGTAAAA 60.394 55.000 0.71 0.00 39.73 1.52
88 89 1.223487 GCCCGGCTCATCTGGTAAA 59.777 57.895 0.71 0.00 39.73 2.01
89 90 1.271840 AAGCCCGGCTCATCTGGTAA 61.272 55.000 13.72 0.00 38.25 2.85
90 91 1.689233 AAGCCCGGCTCATCTGGTA 60.689 57.895 13.72 0.00 38.25 3.25
91 92 3.011517 AAGCCCGGCTCATCTGGT 61.012 61.111 13.72 0.00 38.25 4.00
92 93 2.515523 CAAGCCCGGCTCATCTGG 60.516 66.667 13.72 0.00 38.25 3.86
93 94 2.515523 CCAAGCCCGGCTCATCTG 60.516 66.667 13.72 7.15 38.25 2.90
94 95 3.801997 CCCAAGCCCGGCTCATCT 61.802 66.667 13.72 0.00 38.25 2.90
101 102 2.158561 CTTTTCAAGCCCAAGCCCGG 62.159 60.000 0.00 0.00 41.25 5.73
102 103 1.290009 CTTTTCAAGCCCAAGCCCG 59.710 57.895 0.00 0.00 41.25 6.13
103 104 1.546029 CTACTTTTCAAGCCCAAGCCC 59.454 52.381 0.00 0.00 41.25 5.19
104 105 1.546029 CCTACTTTTCAAGCCCAAGCC 59.454 52.381 0.00 0.00 41.25 4.35
105 106 2.229062 GTCCTACTTTTCAAGCCCAAGC 59.771 50.000 0.00 0.00 40.32 4.01
106 107 2.820197 GGTCCTACTTTTCAAGCCCAAG 59.180 50.000 0.00 0.00 0.00 3.61
107 108 2.175931 TGGTCCTACTTTTCAAGCCCAA 59.824 45.455 0.00 0.00 0.00 4.12
108 109 1.777878 TGGTCCTACTTTTCAAGCCCA 59.222 47.619 0.00 0.00 0.00 5.36
109 110 2.579410 TGGTCCTACTTTTCAAGCCC 57.421 50.000 0.00 0.00 0.00 5.19
110 111 3.193479 CCATTGGTCCTACTTTTCAAGCC 59.807 47.826 0.00 0.00 0.00 4.35
111 112 3.826729 ACCATTGGTCCTACTTTTCAAGC 59.173 43.478 1.37 0.00 0.00 4.01
112 113 5.648092 CCTACCATTGGTCCTACTTTTCAAG 59.352 44.000 12.68 0.00 37.09 3.02
113 114 5.515886 CCCTACCATTGGTCCTACTTTTCAA 60.516 44.000 12.68 0.00 37.09 2.69
114 115 4.018779 CCCTACCATTGGTCCTACTTTTCA 60.019 45.833 12.68 0.00 37.09 2.69
115 116 4.524053 CCCTACCATTGGTCCTACTTTTC 58.476 47.826 12.68 0.00 37.09 2.29
116 117 3.308904 GCCCTACCATTGGTCCTACTTTT 60.309 47.826 12.68 0.00 37.09 2.27
117 118 2.241430 GCCCTACCATTGGTCCTACTTT 59.759 50.000 12.68 0.00 37.09 2.66
118 119 1.844497 GCCCTACCATTGGTCCTACTT 59.156 52.381 12.68 0.00 37.09 2.24
119 120 1.508256 GCCCTACCATTGGTCCTACT 58.492 55.000 12.68 0.00 37.09 2.57
120 121 0.472898 GGCCCTACCATTGGTCCTAC 59.527 60.000 12.68 0.97 37.09 3.18
121 122 0.345502 AGGCCCTACCATTGGTCCTA 59.654 55.000 12.68 0.00 43.14 2.94
122 123 1.084842 AGGCCCTACCATTGGTCCT 59.915 57.895 12.68 9.80 43.14 3.85
123 124 1.227383 CAGGCCCTACCATTGGTCC 59.773 63.158 12.68 7.41 43.14 4.46
124 125 1.227383 CCAGGCCCTACCATTGGTC 59.773 63.158 12.68 0.00 43.14 4.02
125 126 2.316586 CCCAGGCCCTACCATTGGT 61.317 63.158 13.94 13.94 43.14 3.67
126 127 1.999634 CTCCCAGGCCCTACCATTGG 62.000 65.000 0.00 0.00 43.14 3.16
127 128 1.533711 CTCCCAGGCCCTACCATTG 59.466 63.158 0.00 0.00 43.14 2.82
128 129 1.697754 CCTCCCAGGCCCTACCATT 60.698 63.158 0.00 0.00 43.14 3.16
129 130 2.039405 CCTCCCAGGCCCTACCAT 60.039 66.667 0.00 0.00 43.14 3.55
130 131 4.431524 CCCTCCCAGGCCCTACCA 62.432 72.222 0.00 0.00 43.14 3.25
189 190 2.108075 TGAACATATACCTGGCCATGGG 59.892 50.000 20.97 16.10 0.00 4.00
190 191 3.507162 TGAACATATACCTGGCCATGG 57.493 47.619 5.51 13.05 0.00 3.66
191 192 4.464008 AGTTGAACATATACCTGGCCATG 58.536 43.478 5.51 6.06 0.00 3.66
192 193 4.796110 AGTTGAACATATACCTGGCCAT 57.204 40.909 5.51 0.00 0.00 4.40
193 194 4.141574 GGTAGTTGAACATATACCTGGCCA 60.142 45.833 4.71 4.71 35.75 5.36
194 195 4.141574 TGGTAGTTGAACATATACCTGGCC 60.142 45.833 11.86 0.00 38.78 5.36
195 196 5.031066 TGGTAGTTGAACATATACCTGGC 57.969 43.478 11.86 0.00 38.78 4.85
196 197 7.931578 TTTTGGTAGTTGAACATATACCTGG 57.068 36.000 11.86 0.00 38.78 4.45
197 198 8.956426 ACATTTTGGTAGTTGAACATATACCTG 58.044 33.333 11.86 6.01 38.78 4.00
198 199 8.956426 CACATTTTGGTAGTTGAACATATACCT 58.044 33.333 11.86 0.00 38.78 3.08
199 200 8.952278 TCACATTTTGGTAGTTGAACATATACC 58.048 33.333 0.00 1.72 38.53 2.73
203 204 8.519526 GGAATCACATTTTGGTAGTTGAACATA 58.480 33.333 0.00 0.00 0.00 2.29
204 205 7.233348 AGGAATCACATTTTGGTAGTTGAACAT 59.767 33.333 0.00 0.00 0.00 2.71
205 206 6.549364 AGGAATCACATTTTGGTAGTTGAACA 59.451 34.615 0.00 0.00 0.00 3.18
206 207 6.981722 AGGAATCACATTTTGGTAGTTGAAC 58.018 36.000 0.00 0.00 0.00 3.18
207 208 6.775142 TGAGGAATCACATTTTGGTAGTTGAA 59.225 34.615 0.00 0.00 0.00 2.69
208 209 6.303054 TGAGGAATCACATTTTGGTAGTTGA 58.697 36.000 0.00 0.00 0.00 3.18
209 210 6.573664 TGAGGAATCACATTTTGGTAGTTG 57.426 37.500 0.00 0.00 0.00 3.16
210 211 7.287696 AGTTTGAGGAATCACATTTTGGTAGTT 59.712 33.333 0.00 0.00 0.00 2.24
211 212 6.777580 AGTTTGAGGAATCACATTTTGGTAGT 59.222 34.615 0.00 0.00 0.00 2.73
212 213 7.040478 TGAGTTTGAGGAATCACATTTTGGTAG 60.040 37.037 0.00 0.00 0.00 3.18
213 214 6.775142 TGAGTTTGAGGAATCACATTTTGGTA 59.225 34.615 0.00 0.00 0.00 3.25
214 215 5.598005 TGAGTTTGAGGAATCACATTTTGGT 59.402 36.000 0.00 0.00 0.00 3.67
215 216 6.088016 TGAGTTTGAGGAATCACATTTTGG 57.912 37.500 0.00 0.00 0.00 3.28
216 217 7.868922 TGAATGAGTTTGAGGAATCACATTTTG 59.131 33.333 0.00 0.00 0.00 2.44
217 218 7.954835 TGAATGAGTTTGAGGAATCACATTTT 58.045 30.769 0.00 0.00 0.00 1.82
218 219 7.528996 TGAATGAGTTTGAGGAATCACATTT 57.471 32.000 0.00 0.00 0.00 2.32
219 220 7.528996 TTGAATGAGTTTGAGGAATCACATT 57.471 32.000 0.00 0.00 0.00 2.71
220 221 7.363530 CCATTGAATGAGTTTGAGGAATCACAT 60.364 37.037 6.76 0.00 0.00 3.21
221 222 6.071784 CCATTGAATGAGTTTGAGGAATCACA 60.072 38.462 6.76 0.00 0.00 3.58
222 223 6.151648 TCCATTGAATGAGTTTGAGGAATCAC 59.848 38.462 6.76 0.00 0.00 3.06
223 224 6.247676 TCCATTGAATGAGTTTGAGGAATCA 58.752 36.000 6.76 0.00 0.00 2.57
224 225 6.764308 TCCATTGAATGAGTTTGAGGAATC 57.236 37.500 6.76 0.00 0.00 2.52
225 226 6.893554 TGATCCATTGAATGAGTTTGAGGAAT 59.106 34.615 6.76 0.00 0.00 3.01
226 227 6.247676 TGATCCATTGAATGAGTTTGAGGAA 58.752 36.000 6.76 0.00 0.00 3.36
227 228 5.818887 TGATCCATTGAATGAGTTTGAGGA 58.181 37.500 6.76 0.00 0.00 3.71
228 229 6.376299 TCTTGATCCATTGAATGAGTTTGAGG 59.624 38.462 6.76 0.00 0.00 3.86
229 230 7.094506 TGTCTTGATCCATTGAATGAGTTTGAG 60.095 37.037 6.76 0.00 0.00 3.02
230 231 6.716173 TGTCTTGATCCATTGAATGAGTTTGA 59.284 34.615 6.76 0.00 0.00 2.69
231 232 6.805271 GTGTCTTGATCCATTGAATGAGTTTG 59.195 38.462 6.76 0.00 0.00 2.93
232 233 6.491062 TGTGTCTTGATCCATTGAATGAGTTT 59.509 34.615 6.76 0.00 0.00 2.66
233 234 6.005823 TGTGTCTTGATCCATTGAATGAGTT 58.994 36.000 6.76 0.00 0.00 3.01
234 235 5.563592 TGTGTCTTGATCCATTGAATGAGT 58.436 37.500 6.76 0.00 0.00 3.41
235 236 6.505044 TTGTGTCTTGATCCATTGAATGAG 57.495 37.500 6.76 0.00 0.00 2.90
236 237 6.491062 AGTTTGTGTCTTGATCCATTGAATGA 59.509 34.615 6.76 0.00 0.00 2.57
237 238 6.684686 AGTTTGTGTCTTGATCCATTGAATG 58.315 36.000 0.00 0.00 0.00 2.67
238 239 6.718454 AGAGTTTGTGTCTTGATCCATTGAAT 59.282 34.615 0.00 0.00 0.00 2.57
239 240 6.064060 AGAGTTTGTGTCTTGATCCATTGAA 58.936 36.000 0.00 0.00 0.00 2.69
240 241 5.624159 AGAGTTTGTGTCTTGATCCATTGA 58.376 37.500 0.00 0.00 0.00 2.57
241 242 5.954296 AGAGTTTGTGTCTTGATCCATTG 57.046 39.130 0.00 0.00 0.00 2.82
242 243 9.739276 TTAATAGAGTTTGTGTCTTGATCCATT 57.261 29.630 0.00 0.00 0.00 3.16
243 244 9.388506 CTTAATAGAGTTTGTGTCTTGATCCAT 57.611 33.333 0.00 0.00 0.00 3.41
244 245 7.334421 GCTTAATAGAGTTTGTGTCTTGATCCA 59.666 37.037 0.00 0.00 0.00 3.41
245 246 7.464710 CGCTTAATAGAGTTTGTGTCTTGATCC 60.465 40.741 0.00 0.00 0.00 3.36
246 247 7.063544 ACGCTTAATAGAGTTTGTGTCTTGATC 59.936 37.037 0.00 0.00 29.36 2.92
247 248 6.874134 ACGCTTAATAGAGTTTGTGTCTTGAT 59.126 34.615 0.00 0.00 29.36 2.57
248 249 6.145534 CACGCTTAATAGAGTTTGTGTCTTGA 59.854 38.462 0.00 0.00 31.55 3.02
249 250 6.145534 TCACGCTTAATAGAGTTTGTGTCTTG 59.854 38.462 0.00 0.00 31.55 3.02
250 251 6.145696 GTCACGCTTAATAGAGTTTGTGTCTT 59.854 38.462 0.00 0.00 31.55 3.01
251 252 5.634020 GTCACGCTTAATAGAGTTTGTGTCT 59.366 40.000 0.00 0.00 31.55 3.41
252 253 5.634020 AGTCACGCTTAATAGAGTTTGTGTC 59.366 40.000 0.00 0.00 31.55 3.67
253 254 5.539048 AGTCACGCTTAATAGAGTTTGTGT 58.461 37.500 0.00 0.00 31.55 3.72
254 255 7.328737 ACTTAGTCACGCTTAATAGAGTTTGTG 59.671 37.037 0.00 0.00 31.55 3.33
255 256 7.376615 ACTTAGTCACGCTTAATAGAGTTTGT 58.623 34.615 0.00 0.00 31.55 2.83
256 257 7.813852 ACTTAGTCACGCTTAATAGAGTTTG 57.186 36.000 0.00 0.00 31.55 2.93
259 260 8.505625 GCTATACTTAGTCACGCTTAATAGAGT 58.494 37.037 0.00 0.00 34.49 3.24
260 261 8.504815 TGCTATACTTAGTCACGCTTAATAGAG 58.495 37.037 0.00 0.00 0.00 2.43
261 262 8.387190 TGCTATACTTAGTCACGCTTAATAGA 57.613 34.615 0.00 0.00 0.00 1.98
262 263 9.459640 TTTGCTATACTTAGTCACGCTTAATAG 57.540 33.333 0.00 0.00 0.00 1.73
263 264 9.806203 TTTTGCTATACTTAGTCACGCTTAATA 57.194 29.630 0.00 0.00 0.00 0.98
264 265 8.712285 TTTTGCTATACTTAGTCACGCTTAAT 57.288 30.769 0.00 0.00 0.00 1.40
265 266 8.712285 ATTTTGCTATACTTAGTCACGCTTAA 57.288 30.769 0.00 0.00 0.00 1.85
266 267 9.806203 TTATTTTGCTATACTTAGTCACGCTTA 57.194 29.630 0.00 0.00 0.00 3.09
267 268 8.712285 TTATTTTGCTATACTTAGTCACGCTT 57.288 30.769 0.00 0.00 0.00 4.68
268 269 7.980099 ACTTATTTTGCTATACTTAGTCACGCT 59.020 33.333 0.00 0.00 0.00 5.07
269 270 8.128016 ACTTATTTTGCTATACTTAGTCACGC 57.872 34.615 0.00 0.00 0.00 5.34
273 274 9.708092 CCCCTACTTATTTTGCTATACTTAGTC 57.292 37.037 0.00 0.00 0.00 2.59
274 275 8.657712 CCCCCTACTTATTTTGCTATACTTAGT 58.342 37.037 0.00 0.00 0.00 2.24
275 276 8.877195 TCCCCCTACTTATTTTGCTATACTTAG 58.123 37.037 0.00 0.00 0.00 2.18
276 277 8.802057 TCCCCCTACTTATTTTGCTATACTTA 57.198 34.615 0.00 0.00 0.00 2.24
277 278 7.571357 TCTCCCCCTACTTATTTTGCTATACTT 59.429 37.037 0.00 0.00 0.00 2.24
278 279 7.080353 TCTCCCCCTACTTATTTTGCTATACT 58.920 38.462 0.00 0.00 0.00 2.12
279 280 7.234988 TCTCTCCCCCTACTTATTTTGCTATAC 59.765 40.741 0.00 0.00 0.00 1.47
280 281 7.310634 TCTCTCCCCCTACTTATTTTGCTATA 58.689 38.462 0.00 0.00 0.00 1.31
281 282 6.151049 TCTCTCCCCCTACTTATTTTGCTAT 58.849 40.000 0.00 0.00 0.00 2.97
282 283 5.535029 TCTCTCCCCCTACTTATTTTGCTA 58.465 41.667 0.00 0.00 0.00 3.49
283 284 4.371681 TCTCTCCCCCTACTTATTTTGCT 58.628 43.478 0.00 0.00 0.00 3.91
284 285 4.772886 TCTCTCCCCCTACTTATTTTGC 57.227 45.455 0.00 0.00 0.00 3.68
285 286 6.314899 AGTTCTCTCCCCCTACTTATTTTG 57.685 41.667 0.00 0.00 0.00 2.44
286 287 6.616137 CCTAGTTCTCTCCCCCTACTTATTTT 59.384 42.308 0.00 0.00 0.00 1.82
287 288 6.144625 CCTAGTTCTCTCCCCCTACTTATTT 58.855 44.000 0.00 0.00 0.00 1.40
288 289 5.198219 ACCTAGTTCTCTCCCCCTACTTATT 59.802 44.000 0.00 0.00 0.00 1.40
289 290 4.738132 ACCTAGTTCTCTCCCCCTACTTAT 59.262 45.833 0.00 0.00 0.00 1.73
290 291 4.125282 ACCTAGTTCTCTCCCCCTACTTA 58.875 47.826 0.00 0.00 0.00 2.24
291 292 2.934511 ACCTAGTTCTCTCCCCCTACTT 59.065 50.000 0.00 0.00 0.00 2.24
292 293 2.587053 ACCTAGTTCTCTCCCCCTACT 58.413 52.381 0.00 0.00 0.00 2.57
293 294 4.745484 ATACCTAGTTCTCTCCCCCTAC 57.255 50.000 0.00 0.00 0.00 3.18
294 295 5.746013 TCTATACCTAGTTCTCTCCCCCTA 58.254 45.833 0.00 0.00 0.00 3.53
295 296 4.589566 TCTATACCTAGTTCTCTCCCCCT 58.410 47.826 0.00 0.00 0.00 4.79
296 297 5.015391 TGATCTATACCTAGTTCTCTCCCCC 59.985 48.000 0.00 0.00 0.00 5.40
297 298 6.142259 TGATCTATACCTAGTTCTCTCCCC 57.858 45.833 0.00 0.00 0.00 4.81
298 299 6.152154 GCTTGATCTATACCTAGTTCTCTCCC 59.848 46.154 0.00 0.00 0.00 4.30
299 300 6.717540 TGCTTGATCTATACCTAGTTCTCTCC 59.282 42.308 0.00 0.00 0.00 3.71
300 301 7.753309 TGCTTGATCTATACCTAGTTCTCTC 57.247 40.000 0.00 0.00 0.00 3.20
301 302 7.782644 AGTTGCTTGATCTATACCTAGTTCTCT 59.217 37.037 0.00 0.00 0.00 3.10
302 303 7.947282 AGTTGCTTGATCTATACCTAGTTCTC 58.053 38.462 0.00 0.00 0.00 2.87
303 304 7.014808 GGAGTTGCTTGATCTATACCTAGTTCT 59.985 40.741 0.00 0.00 0.00 3.01
304 305 7.014808 AGGAGTTGCTTGATCTATACCTAGTTC 59.985 40.741 0.00 0.00 0.00 3.01
305 306 6.841755 AGGAGTTGCTTGATCTATACCTAGTT 59.158 38.462 0.00 0.00 0.00 2.24
306 307 6.377912 AGGAGTTGCTTGATCTATACCTAGT 58.622 40.000 0.00 0.00 0.00 2.57
307 308 6.909550 AGGAGTTGCTTGATCTATACCTAG 57.090 41.667 0.00 0.00 0.00 3.02
311 312 9.149225 CATGATTAGGAGTTGCTTGATCTATAC 57.851 37.037 0.00 0.00 0.00 1.47
366 367 4.885907 CCTTGCATGACCTGATCTTGTAAT 59.114 41.667 0.00 0.00 36.78 1.89
378 379 0.034089 AAGCCTACCCTTGCATGACC 60.034 55.000 0.00 0.00 0.00 4.02
411 494 7.226720 ACCCTTCGATTTAACTGCTATGTTATG 59.773 37.037 0.00 0.00 33.16 1.90
441 524 4.755411 TCGTACTCATGGTTCCTTGATTC 58.245 43.478 7.67 2.61 0.00 2.52
447 530 4.181578 CGAAAATCGTACTCATGGTTCCT 58.818 43.478 0.00 0.00 34.72 3.36
453 536 3.634730 AACGCGAAAATCGTACTCATG 57.365 42.857 15.93 0.00 42.81 3.07
460 543 2.598589 TGCTACTAACGCGAAAATCGT 58.401 42.857 15.93 3.24 42.81 3.73
462 545 4.316375 TGTTGCTACTAACGCGAAAATC 57.684 40.909 15.93 0.00 33.28 2.17
464 547 4.533225 TTTGTTGCTACTAACGCGAAAA 57.467 36.364 15.93 0.00 33.28 2.29
502 585 4.806775 CGACGTTGGTGATAATATGGTTCA 59.193 41.667 0.00 0.00 0.00 3.18
509 592 2.427812 TCTGCCGACGTTGGTGATAATA 59.572 45.455 22.97 0.00 0.00 0.98
518 601 1.560923 CTCCTTATCTGCCGACGTTG 58.439 55.000 0.00 0.00 0.00 4.10
525 608 3.366052 TTTTGTCCCTCCTTATCTGCC 57.634 47.619 0.00 0.00 0.00 4.85
540 623 0.526739 GTTTCCGCACCGCTTTTTGT 60.527 50.000 0.00 0.00 0.00 2.83
546 629 1.108776 TATCTAGTTTCCGCACCGCT 58.891 50.000 0.00 0.00 0.00 5.52
592 675 9.613957 CTAGTACGACAAAAATCGATCTCATAT 57.386 33.333 0.00 0.00 45.13 1.78
599 682 6.903883 ATTGCTAGTACGACAAAAATCGAT 57.096 33.333 1.63 0.00 45.13 3.59
638 725 5.195001 ACATTGGTGTTAATGTGTTCCAC 57.805 39.130 3.57 0.00 46.44 4.02
654 741 3.474600 CCTCCTTATCTGCTGACATTGG 58.525 50.000 0.00 0.00 0.00 3.16
658 745 2.111384 GTCCCTCCTTATCTGCTGACA 58.889 52.381 0.00 0.00 0.00 3.58
703 805 9.660180 AAACTTGTAGTTGCCTATTTTTCAAAA 57.340 25.926 0.00 0.00 38.66 2.44
717 819 9.620660 ATTAAGGCGAAAATAAACTTGTAGTTG 57.379 29.630 0.00 0.00 38.66 3.16
783 886 2.518949 CTGATGTTGGTGTTAATGCGC 58.481 47.619 0.00 0.00 0.00 6.09
800 903 4.380843 TTTGTCCCTCCTTATTTGCTGA 57.619 40.909 0.00 0.00 0.00 4.26
806 909 4.832823 CACCACTTTTTGTCCCTCCTTATT 59.167 41.667 0.00 0.00 0.00 1.40
820 923 7.119262 CGTTATCTACTTTGATCCACCACTTTT 59.881 37.037 0.00 0.00 0.00 2.27
825 928 4.682320 GCCGTTATCTACTTTGATCCACCA 60.682 45.833 0.00 0.00 0.00 4.17
830 933 3.973657 TCGGCCGTTATCTACTTTGATC 58.026 45.455 27.15 0.00 0.00 2.92
831 934 3.799232 GCTCGGCCGTTATCTACTTTGAT 60.799 47.826 27.15 0.00 0.00 2.57
832 935 2.480759 GCTCGGCCGTTATCTACTTTGA 60.481 50.000 27.15 0.00 0.00 2.69
848 951 0.736636 TCATACGTGTAGTGGCTCGG 59.263 55.000 0.00 0.00 0.00 4.63
913 1016 2.412770 GCAAAAATGAATGCTCAACCCG 59.587 45.455 0.00 0.00 39.46 5.28
955 1061 4.689612 ACATACAATCCTAGCACGGAAT 57.310 40.909 0.00 0.00 36.49 3.01
960 1066 6.924060 AGATCGTAAACATACAATCCTAGCAC 59.076 38.462 0.00 0.00 0.00 4.40
980 1086 7.066284 AGTCCATCAAATTTCTGGTAAAGATCG 59.934 37.037 13.48 0.00 33.93 3.69
994 1100 4.834496 TGAGGCAGAAAAGTCCATCAAATT 59.166 37.500 0.00 0.00 0.00 1.82
995 1101 4.410099 TGAGGCAGAAAAGTCCATCAAAT 58.590 39.130 0.00 0.00 0.00 2.32
997 1103 3.072915 TCTGAGGCAGAAAAGTCCATCAA 59.927 43.478 0.00 0.00 37.57 2.57
998 1104 2.639347 TCTGAGGCAGAAAAGTCCATCA 59.361 45.455 0.00 0.00 37.57 3.07
999 1105 3.340814 TCTGAGGCAGAAAAGTCCATC 57.659 47.619 0.00 0.00 37.57 3.51
1000 1106 3.795688 TTCTGAGGCAGAAAAGTCCAT 57.204 42.857 7.36 0.00 45.84 3.41
1009 1115 3.507162 TCCAACAAATTCTGAGGCAGA 57.493 42.857 0.00 0.00 38.87 4.26
1010 1116 3.571401 AGTTCCAACAAATTCTGAGGCAG 59.429 43.478 0.00 0.00 0.00 4.85
1011 1117 3.565307 AGTTCCAACAAATTCTGAGGCA 58.435 40.909 0.00 0.00 0.00 4.75
1012 1118 4.590850 AAGTTCCAACAAATTCTGAGGC 57.409 40.909 0.00 0.00 0.00 4.70
1013 1119 6.147864 TGAAAGTTCCAACAAATTCTGAGG 57.852 37.500 0.00 0.00 0.00 3.86
1014 1120 7.260603 AGTTGAAAGTTCCAACAAATTCTGAG 58.739 34.615 7.77 0.00 44.54 3.35
1015 1121 7.169158 AGTTGAAAGTTCCAACAAATTCTGA 57.831 32.000 7.77 0.00 44.54 3.27
1016 1122 8.971321 CATAGTTGAAAGTTCCAACAAATTCTG 58.029 33.333 7.77 0.00 44.54 3.02
1017 1123 8.695456 ACATAGTTGAAAGTTCCAACAAATTCT 58.305 29.630 7.77 0.00 44.54 2.40
1114 1228 4.157840 GGAGAACACACATTGGGATTAACC 59.842 45.833 0.00 0.00 38.08 2.85
1115 1229 4.764823 TGGAGAACACACATTGGGATTAAC 59.235 41.667 0.00 0.00 0.00 2.01
1116 1230 4.991776 TGGAGAACACACATTGGGATTAA 58.008 39.130 0.00 0.00 0.00 1.40
1117 1231 4.649267 TGGAGAACACACATTGGGATTA 57.351 40.909 0.00 0.00 0.00 1.75
1118 1232 3.524095 TGGAGAACACACATTGGGATT 57.476 42.857 0.00 0.00 0.00 3.01
1221 1335 2.681097 GCCCATGTCTCCTCTTACCAAC 60.681 54.545 0.00 0.00 0.00 3.77
1222 1336 1.559682 GCCCATGTCTCCTCTTACCAA 59.440 52.381 0.00 0.00 0.00 3.67
1223 1337 1.204146 GCCCATGTCTCCTCTTACCA 58.796 55.000 0.00 0.00 0.00 3.25
1224 1338 1.204146 TGCCCATGTCTCCTCTTACC 58.796 55.000 0.00 0.00 0.00 2.85
1225 1339 2.843701 CATGCCCATGTCTCCTCTTAC 58.156 52.381 0.13 0.00 34.23 2.34
1233 1347 7.013655 GAATAAGTTCAATACATGCCCATGTCT 59.986 37.037 16.45 5.41 41.15 3.41
1234 1348 7.141363 GAATAAGTTCAATACATGCCCATGTC 58.859 38.462 16.45 2.84 41.15 3.06
1235 1349 6.238731 CGAATAAGTTCAATACATGCCCATGT 60.239 38.462 17.05 17.05 43.01 3.21
1236 1350 6.144854 CGAATAAGTTCAATACATGCCCATG 58.855 40.000 6.71 6.71 38.22 3.66
1338 1452 1.191647 CGGTAAATATGAAGCGGACGC 59.808 52.381 8.91 8.91 42.33 5.19
1358 1472 1.462283 GCGAAAAGTACTCCCGTTTCC 59.538 52.381 10.68 2.92 0.00 3.13
1367 1481 2.473984 CGAAAACGGAGCGAAAAGTACT 59.526 45.455 0.00 0.00 0.00 2.73
1519 1633 4.471386 AGAAGAGATAGCAACCAAGGCTAA 59.529 41.667 0.00 0.00 46.03 3.09
1557 1671 1.338890 GGAGAGGGAGTAGTTGGGGC 61.339 65.000 0.00 0.00 0.00 5.80
1574 1688 1.480954 GAAGAAGCGTATGTGGGAGGA 59.519 52.381 0.00 0.00 0.00 3.71
1825 1941 1.988982 GCACATCCTCCCTCCTTCCC 61.989 65.000 0.00 0.00 0.00 3.97
1829 1945 2.373707 GCAGCACATCCTCCCTCCT 61.374 63.158 0.00 0.00 0.00 3.69
2031 2160 7.716998 ACAGCCTGAACGATATAATCAAGAATT 59.283 33.333 0.00 0.00 0.00 2.17
2052 2181 0.747255 TGATCGCTCTAGGAACAGCC 59.253 55.000 0.00 0.00 31.37 4.85
2101 2231 3.367498 CGCCACCCTATCTTATACTCTGC 60.367 52.174 0.00 0.00 0.00 4.26
2267 2404 6.582636 TGAGTACACACACTGATTCTCTTTT 58.417 36.000 0.00 0.00 0.00 2.27
2494 2631 4.758251 TGATGGGTGCACGGCTCG 62.758 66.667 11.45 0.00 0.00 5.03
2525 2662 7.872483 ACATATCAGTTTTGCCAACTAAAAAGG 59.128 33.333 0.00 0.00 0.00 3.11
2532 2669 6.491403 AGAGAAACATATCAGTTTTGCCAACT 59.509 34.615 0.00 0.00 41.48 3.16
2611 2763 8.524870 AAAAAGATGTTCAATACACATTCAGC 57.475 30.769 0.00 0.00 40.19 4.26
2667 2820 1.061131 CGTTGCAAAGCGTCTAGGATG 59.939 52.381 0.00 0.00 0.00 3.51
2671 2824 4.725758 GCGTTGCAAAGCGTCTAG 57.274 55.556 21.24 0.00 0.00 2.43
2746 2899 3.290948 TGGTTTAACTGCTGGTTCTGT 57.709 42.857 0.00 0.00 39.17 3.41
2759 2912 5.209818 TGGTGTTGTTGTTGTTGGTTTAA 57.790 34.783 0.00 0.00 0.00 1.52
2803 2956 3.545633 GTGATCTTCTCGTTGTTGTTGC 58.454 45.455 0.00 0.00 0.00 4.17
2804 2957 3.362986 CCGTGATCTTCTCGTTGTTGTTG 60.363 47.826 0.00 0.00 32.17 3.33
2805 2958 2.800544 CCGTGATCTTCTCGTTGTTGTT 59.199 45.455 0.00 0.00 32.17 2.83
3230 3393 1.674651 GCACCTTCCCTTTCGGTCC 60.675 63.158 0.00 0.00 0.00 4.46
3304 3467 3.334583 TTGAGCCTACCATGACAGAAC 57.665 47.619 0.00 0.00 0.00 3.01
3305 3468 3.327757 AGTTTGAGCCTACCATGACAGAA 59.672 43.478 0.00 0.00 0.00 3.02
3307 3470 3.005554 CAGTTTGAGCCTACCATGACAG 58.994 50.000 0.00 0.00 0.00 3.51
3308 3471 2.371841 ACAGTTTGAGCCTACCATGACA 59.628 45.455 0.00 0.00 0.00 3.58
3309 3472 2.744202 CACAGTTTGAGCCTACCATGAC 59.256 50.000 0.00 0.00 0.00 3.06
3310 3473 2.637382 TCACAGTTTGAGCCTACCATGA 59.363 45.455 0.00 0.00 0.00 3.07
3311 3474 3.057969 TCACAGTTTGAGCCTACCATG 57.942 47.619 0.00 0.00 0.00 3.66
3312 3475 4.307032 AATCACAGTTTGAGCCTACCAT 57.693 40.909 0.00 0.00 37.77 3.55
3323 3486 6.357367 ACAAACTCTGGACTAATCACAGTTT 58.643 36.000 0.00 0.00 33.22 2.66
3706 3870 3.706086 TCCAACTCTGTATATGCTGAGCA 59.294 43.478 21.95 10.59 44.86 4.26
3816 3982 2.082354 GCAAGAAGCAGACTACCGC 58.918 57.895 0.00 0.00 44.79 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.