Multiple sequence alignment - TraesCS1A01G096400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G096400 chr1A 100.000 3410 0 0 1 3410 91669915 91673324 0.000000e+00 6298.0
1 TraesCS1A01G096400 chr1A 98.963 1157 7 4 2259 3410 91675338 91674182 0.000000e+00 2065.0
2 TraesCS1A01G096400 chr1A 93.310 284 12 2 3125 3401 531284690 531284973 2.450000e-111 412.0
3 TraesCS1A01G096400 chr1A 94.681 188 10 0 1 188 73409037 73408850 3.330000e-75 292.0
4 TraesCS1A01G096400 chr1A 94.681 188 10 0 1 188 179524453 179524640 3.330000e-75 292.0
5 TraesCS1A01G096400 chr1B 92.126 1689 100 21 574 2259 156266479 156264821 0.000000e+00 2351.0
6 TraesCS1A01G096400 chr1B 95.395 304 13 1 2260 2562 561641216 561640913 1.840000e-132 483.0
7 TraesCS1A01G096400 chr1B 74.667 225 35 14 444 664 589059317 589059111 2.820000e-11 80.5
8 TraesCS1A01G096400 chr1D 91.646 1592 93 23 667 2256 97311736 97313289 0.000000e+00 2167.0
9 TraesCS1A01G096400 chr1D 88.934 244 26 1 2275 2517 322626690 322626933 1.990000e-77 300.0
10 TraesCS1A01G096400 chr1D 85.821 268 35 3 2256 2522 92060385 92060650 7.200000e-72 281.0
11 TraesCS1A01G096400 chr1D 94.194 155 9 0 3152 3306 450509195 450509041 1.580000e-58 237.0
12 TraesCS1A01G096400 chr1D 97.436 39 1 0 2586 2624 92090671 92090709 2.200000e-07 67.6
13 TraesCS1A01G096400 chr5B 93.791 306 18 1 2260 2564 461647826 461647521 3.100000e-125 459.0
14 TraesCS1A01G096400 chr5B 93.092 304 14 2 3105 3401 461647407 461647104 4.040000e-119 438.0
15 TraesCS1A01G096400 chr5B 94.014 284 10 2 3125 3401 289773525 289773242 1.130000e-114 424.0
16 TraesCS1A01G096400 chr7B 93.399 303 19 1 2259 2560 733097489 733097791 6.710000e-122 448.0
17 TraesCS1A01G096400 chr7B 86.307 241 10 10 2904 3121 552669169 552668929 1.220000e-59 241.0
18 TraesCS1A01G096400 chr7B 97.674 43 1 0 2587 2629 552670013 552669971 1.310000e-09 75.0
19 TraesCS1A01G096400 chr2A 92.208 308 11 2 2811 3116 775533545 775533249 1.130000e-114 424.0
20 TraesCS1A01G096400 chr2A 91.379 232 5 3 2586 2813 775533886 775533666 1.540000e-78 303.0
21 TraesCS1A01G096400 chr2A 93.434 198 12 1 1 197 531928376 531928179 3.330000e-75 292.0
22 TraesCS1A01G096400 chr2A 93.684 190 12 0 1 190 80584456 80584645 5.570000e-73 285.0
23 TraesCS1A01G096400 chr2A 97.297 37 1 0 2586 2622 351182602 351182638 2.840000e-06 63.9
24 TraesCS1A01G096400 chr7A 91.475 305 25 1 2259 2562 43463462 43463766 5.260000e-113 418.0
25 TraesCS1A01G096400 chr7A 94.681 188 10 0 1 188 321180017 321180204 3.330000e-75 292.0
26 TraesCS1A01G096400 chr7A 93.717 191 12 0 1 191 206762003 206761813 1.550000e-73 287.0
27 TraesCS1A01G096400 chr7A 92.053 151 5 4 3258 3401 43463995 43464145 4.460000e-49 206.0
28 TraesCS1A01G096400 chr6D 90.461 304 28 1 2260 2562 360632727 360633030 1.910000e-107 399.0
29 TraesCS1A01G096400 chr6D 83.648 159 19 3 285 437 57994413 57994570 3.550000e-30 143.0
30 TraesCS1A01G096400 chr6D 87.778 90 11 0 2428 2517 447994084 447994173 4.650000e-19 106.0
31 TraesCS1A01G096400 chr5A 90.164 305 28 2 2260 2562 166538127 166537823 2.470000e-106 396.0
32 TraesCS1A01G096400 chr5A 94.681 188 10 0 1 188 297765242 297765055 3.330000e-75 292.0
33 TraesCS1A01G096400 chr5A 82.609 184 15 3 2638 2806 17077066 17076885 2.740000e-31 147.0
34 TraesCS1A01G096400 chr2D 90.132 304 29 1 2260 2562 286123104 286122801 8.870000e-106 394.0
35 TraesCS1A01G096400 chr2D 91.065 291 23 3 2275 2562 409527321 409527031 1.150000e-104 390.0
36 TraesCS1A01G096400 chr2D 91.279 172 10 4 3137 3306 80814029 80813861 2.650000e-56 230.0
37 TraesCS1A01G096400 chr2D 77.887 407 50 22 285 665 203042537 203042145 2.060000e-52 217.0
38 TraesCS1A01G096400 chr2D 89.344 122 4 7 3289 3401 80774568 80774447 9.860000e-31 145.0
39 TraesCS1A01G096400 chr2D 89.344 122 4 6 3289 3401 80813842 80813721 9.860000e-31 145.0
40 TraesCS1A01G096400 chr2D 81.319 182 21 3 2638 2806 610365367 610365186 5.940000e-28 135.0
41 TraesCS1A01G096400 chr6A 89.299 271 29 0 2257 2527 562258403 562258673 1.170000e-89 340.0
42 TraesCS1A01G096400 chr6A 94.709 189 10 0 1 189 111959354 111959166 9.250000e-76 294.0
43 TraesCS1A01G096400 chr6A 91.279 172 11 4 3137 3306 562262465 562262634 7.360000e-57 231.0
44 TraesCS1A01G096400 chr6A 94.737 38 2 0 2586 2623 562260819 562260856 3.670000e-05 60.2
45 TraesCS1A01G096400 chr3A 94.180 189 11 0 1 189 333547453 333547265 4.310000e-74 289.0
46 TraesCS1A01G096400 chr5D 91.860 172 11 3 3137 3306 59821711 59821541 1.580000e-58 237.0
47 TraesCS1A01G096400 chr5D 90.164 122 3 3 3289 3401 59821522 59821401 2.120000e-32 150.0
48 TraesCS1A01G096400 chr4A 91.279 172 11 4 3137 3306 38335545 38335714 7.360000e-57 231.0
49 TraesCS1A01G096400 chr4A 83.152 184 16 2 2638 2806 662966135 662965952 1.640000e-33 154.0
50 TraesCS1A01G096400 chr4A 83.152 184 14 3 2638 2806 713856356 713856175 5.890000e-33 152.0
51 TraesCS1A01G096400 chr4A 80.838 167 23 7 2646 2803 402266620 402266786 4.620000e-24 122.0
52 TraesCS1A01G096400 chr4A 85.714 91 10 2 291 379 581931436 581931347 3.620000e-15 93.5
53 TraesCS1A01G096400 chr4B 85.909 220 21 4 2281 2500 292152381 292152590 3.420000e-55 226.0
54 TraesCS1A01G096400 chr4B 88.235 85 6 3 285 366 31639569 31639652 7.790000e-17 99.0
55 TraesCS1A01G096400 chr4B 86.207 87 12 0 2431 2517 178644661 178644575 1.010000e-15 95.3
56 TraesCS1A01G096400 chr4B 91.304 46 4 0 2811 2856 329098143 329098188 2.840000e-06 63.9
57 TraesCS1A01G096400 chr6B 90.643 171 5 1 2862 3032 623722573 623722732 2.060000e-52 217.0
58 TraesCS1A01G096400 chr6B 97.183 71 2 0 2970 3040 623722853 623722923 1.660000e-23 121.0
59 TraesCS1A01G096400 chr6B 95.775 71 1 1 2586 2654 623722371 623722441 2.780000e-21 113.0
60 TraesCS1A01G096400 chr6B 80.769 156 16 11 2970 3116 623722792 623722942 3.600000e-20 110.0
61 TraesCS1A01G096400 chr6B 96.825 63 2 0 2970 3032 623722731 623722793 4.650000e-19 106.0
62 TraesCS1A01G096400 chr3B 82.888 187 16 3 2635 2806 520150139 520150324 1.640000e-33 154.0
63 TraesCS1A01G096400 chr3B 82.888 187 15 3 2635 2806 21936143 21936327 5.890000e-33 152.0
64 TraesCS1A01G096400 chr3D 87.778 90 11 0 2428 2517 364620381 364620470 4.650000e-19 106.0
65 TraesCS1A01G096400 chr3D 87.778 90 11 0 2428 2517 434686520 434686431 4.650000e-19 106.0
66 TraesCS1A01G096400 chr4D 90.566 53 5 0 444 496 19201799 19201851 1.700000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G096400 chr1A 91669915 91673324 3409 False 6298.0 6298 100.000000 1 3410 1 chr1A.!!$F1 3409
1 TraesCS1A01G096400 chr1A 91674182 91675338 1156 True 2065.0 2065 98.963000 2259 3410 1 chr1A.!!$R2 1151
2 TraesCS1A01G096400 chr1B 156264821 156266479 1658 True 2351.0 2351 92.126000 574 2259 1 chr1B.!!$R1 1685
3 TraesCS1A01G096400 chr1D 97311736 97313289 1553 False 2167.0 2167 91.646000 667 2256 1 chr1D.!!$F3 1589
4 TraesCS1A01G096400 chr5B 461647104 461647826 722 True 448.5 459 93.441500 2260 3401 2 chr5B.!!$R2 1141
5 TraesCS1A01G096400 chr2A 775533249 775533886 637 True 363.5 424 91.793500 2586 3116 2 chr2A.!!$R2 530
6 TraesCS1A01G096400 chr7A 43463462 43464145 683 False 312.0 418 91.764000 2259 3401 2 chr7A.!!$F2 1142
7 TraesCS1A01G096400 chr6A 562258403 562262634 4231 False 210.4 340 91.771667 2257 3306 3 chr6A.!!$F1 1049

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 170 0.179234 TTGGAAGACACCTGACGCAA 59.821 50.0 0.00 0.0 0.00 4.85 F
212 213 0.320073 TCCCGGCTTCGTTTGTGTAG 60.320 55.0 0.00 0.0 0.00 2.74 F
213 214 0.320073 CCCGGCTTCGTTTGTGTAGA 60.320 55.0 0.00 0.0 0.00 2.59 F
1677 1689 0.463833 GTCAATCGATTTCGGGGGCT 60.464 55.0 8.21 0.0 40.29 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1489 1499 0.107263 TCTGTGCTGTCTTGGTTGCA 60.107 50.000 0.0 0.0 0.0 4.08 R
1940 1952 0.109039 GTCTGCTGTCGTCTCCTTCC 60.109 60.000 0.0 0.0 0.0 3.46 R
2068 2080 0.750911 CCTTGGAGCCAGCAGATTCC 60.751 60.000 0.0 0.0 0.0 3.01 R
2850 5078 4.046938 TGAATCTGAGCCGATACTTCAC 57.953 45.455 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.474816 GACATAGGAGTGTCGGATTGC 58.525 52.381 0.00 0.00 39.12 3.56
25 26 1.831106 ACATAGGAGTGTCGGATTGCA 59.169 47.619 0.00 0.00 0.00 4.08
26 27 2.236146 ACATAGGAGTGTCGGATTGCAA 59.764 45.455 0.00 0.00 0.00 4.08
27 28 3.270027 CATAGGAGTGTCGGATTGCAAA 58.730 45.455 1.71 0.00 0.00 3.68
28 29 2.270352 AGGAGTGTCGGATTGCAAAA 57.730 45.000 1.71 0.00 0.00 2.44
29 30 1.880027 AGGAGTGTCGGATTGCAAAAC 59.120 47.619 1.71 0.26 0.00 2.43
30 31 1.399727 GGAGTGTCGGATTGCAAAACG 60.400 52.381 16.99 16.99 0.00 3.60
31 32 0.591170 AGTGTCGGATTGCAAAACGG 59.409 50.000 21.03 14.34 32.27 4.44
32 33 0.589223 GTGTCGGATTGCAAAACGGA 59.411 50.000 21.03 15.98 32.27 4.69
33 34 0.589223 TGTCGGATTGCAAAACGGAC 59.411 50.000 25.53 25.53 45.03 4.79
34 35 0.589223 GTCGGATTGCAAAACGGACA 59.411 50.000 26.43 10.48 44.49 4.02
35 36 1.002251 GTCGGATTGCAAAACGGACAA 60.002 47.619 26.43 10.22 44.49 3.18
36 37 1.002251 TCGGATTGCAAAACGGACAAC 60.002 47.619 21.03 0.00 32.27 3.32
37 38 1.268794 CGGATTGCAAAACGGACAACA 60.269 47.619 15.75 0.00 0.00 3.33
38 39 2.393764 GGATTGCAAAACGGACAACAG 58.606 47.619 1.71 0.00 0.00 3.16
39 40 2.034053 GGATTGCAAAACGGACAACAGA 59.966 45.455 1.71 0.00 0.00 3.41
40 41 2.842208 TTGCAAAACGGACAACAGAG 57.158 45.000 0.00 0.00 0.00 3.35
41 42 2.031258 TGCAAAACGGACAACAGAGA 57.969 45.000 0.00 0.00 0.00 3.10
42 43 2.360844 TGCAAAACGGACAACAGAGAA 58.639 42.857 0.00 0.00 0.00 2.87
43 44 2.750166 TGCAAAACGGACAACAGAGAAA 59.250 40.909 0.00 0.00 0.00 2.52
44 45 3.191581 TGCAAAACGGACAACAGAGAAAA 59.808 39.130 0.00 0.00 0.00 2.29
45 46 4.142271 TGCAAAACGGACAACAGAGAAAAT 60.142 37.500 0.00 0.00 0.00 1.82
46 47 4.207019 GCAAAACGGACAACAGAGAAAATG 59.793 41.667 0.00 0.00 0.00 2.32
47 48 3.626028 AACGGACAACAGAGAAAATGC 57.374 42.857 0.00 0.00 0.00 3.56
48 49 2.851195 ACGGACAACAGAGAAAATGCT 58.149 42.857 0.00 0.00 0.00 3.79
49 50 2.808543 ACGGACAACAGAGAAAATGCTC 59.191 45.455 0.00 0.00 35.11 4.26
50 51 2.159787 CGGACAACAGAGAAAATGCTCG 60.160 50.000 0.00 0.00 39.87 5.03
51 52 2.160417 GGACAACAGAGAAAATGCTCGG 59.840 50.000 0.00 0.00 39.87 4.63
52 53 3.067106 GACAACAGAGAAAATGCTCGGA 58.933 45.455 0.00 0.00 39.87 4.55
53 54 3.679389 ACAACAGAGAAAATGCTCGGAT 58.321 40.909 0.00 0.00 39.87 4.18
54 55 3.438087 ACAACAGAGAAAATGCTCGGATG 59.562 43.478 0.00 0.00 39.87 3.51
55 56 2.012673 ACAGAGAAAATGCTCGGATGC 58.987 47.619 0.00 0.00 39.87 3.91
62 63 4.842292 TGCTCGGATGCATGAGAC 57.158 55.556 16.17 9.01 38.12 3.36
63 64 1.899617 TGCTCGGATGCATGAGACA 59.100 52.632 16.17 11.01 38.12 3.41
64 65 0.249955 TGCTCGGATGCATGAGACAA 59.750 50.000 16.17 0.74 38.12 3.18
65 66 1.338960 TGCTCGGATGCATGAGACAAA 60.339 47.619 16.17 0.00 38.12 2.83
66 67 1.063174 GCTCGGATGCATGAGACAAAC 59.937 52.381 16.17 0.00 34.04 2.93
67 68 2.349590 CTCGGATGCATGAGACAAACA 58.650 47.619 2.46 0.00 34.04 2.83
68 69 2.076100 TCGGATGCATGAGACAAACAC 58.924 47.619 2.46 0.00 0.00 3.32
69 70 1.201954 CGGATGCATGAGACAAACACG 60.202 52.381 2.46 0.00 0.00 4.49
70 71 1.806542 GGATGCATGAGACAAACACGT 59.193 47.619 2.46 0.00 0.00 4.49
71 72 3.000041 GGATGCATGAGACAAACACGTA 59.000 45.455 2.46 0.00 0.00 3.57
72 73 3.623060 GGATGCATGAGACAAACACGTAT 59.377 43.478 2.46 0.00 0.00 3.06
73 74 4.494690 GGATGCATGAGACAAACACGTATG 60.495 45.833 2.46 0.00 0.00 2.39
74 75 3.398406 TGCATGAGACAAACACGTATGT 58.602 40.909 0.00 0.00 42.46 2.29
75 76 4.561105 TGCATGAGACAAACACGTATGTA 58.439 39.130 0.00 0.00 38.45 2.29
76 77 4.991687 TGCATGAGACAAACACGTATGTAA 59.008 37.500 0.00 0.00 38.45 2.41
77 78 5.467063 TGCATGAGACAAACACGTATGTAAA 59.533 36.000 0.00 0.00 38.45 2.01
78 79 6.148645 TGCATGAGACAAACACGTATGTAAAT 59.851 34.615 0.00 0.00 38.45 1.40
79 80 6.465781 GCATGAGACAAACACGTATGTAAATG 59.534 38.462 0.00 1.20 38.45 2.32
80 81 5.922546 TGAGACAAACACGTATGTAAATGC 58.077 37.500 0.00 0.00 38.45 3.56
81 82 4.953269 AGACAAACACGTATGTAAATGCG 58.047 39.130 1.40 1.40 38.45 4.73
82 83 4.687018 AGACAAACACGTATGTAAATGCGA 59.313 37.500 10.58 0.00 38.45 5.10
83 84 5.350365 AGACAAACACGTATGTAAATGCGAT 59.650 36.000 10.58 0.00 38.45 4.58
84 85 5.320723 ACAAACACGTATGTAAATGCGATG 58.679 37.500 10.58 7.28 38.45 3.84
85 86 5.106869 ACAAACACGTATGTAAATGCGATGT 60.107 36.000 10.58 7.86 38.45 3.06
86 87 6.091034 ACAAACACGTATGTAAATGCGATGTA 59.909 34.615 10.58 0.00 38.45 2.29
87 88 5.630896 ACACGTATGTAAATGCGATGTAC 57.369 39.130 10.58 0.00 37.26 2.90
88 89 5.103687 ACACGTATGTAAATGCGATGTACA 58.896 37.500 10.58 0.00 37.26 2.90
89 90 5.751509 ACACGTATGTAAATGCGATGTACAT 59.248 36.000 8.43 8.43 40.60 2.29
90 91 6.064525 CACGTATGTAAATGCGATGTACATG 58.935 40.000 14.43 6.99 38.56 3.21
91 92 5.980715 ACGTATGTAAATGCGATGTACATGA 59.019 36.000 14.43 0.00 38.56 3.07
92 93 6.645003 ACGTATGTAAATGCGATGTACATGAT 59.355 34.615 14.43 0.00 38.56 2.45
93 94 6.949877 CGTATGTAAATGCGATGTACATGATG 59.050 38.462 14.43 4.04 38.56 3.07
94 95 7.148820 CGTATGTAAATGCGATGTACATGATGA 60.149 37.037 14.43 0.00 38.56 2.92
95 96 6.285790 TGTAAATGCGATGTACATGATGAC 57.714 37.500 14.43 0.00 0.00 3.06
96 97 5.814705 TGTAAATGCGATGTACATGATGACA 59.185 36.000 14.43 5.39 0.00 3.58
97 98 6.482973 TGTAAATGCGATGTACATGATGACAT 59.517 34.615 14.43 6.03 38.99 3.06
113 114 7.753309 TGATGACATGATATGAAATGCATGA 57.247 32.000 0.00 0.00 40.58 3.07
114 115 7.590279 TGATGACATGATATGAAATGCATGAC 58.410 34.615 0.00 0.00 40.58 3.06
115 116 6.945938 TGACATGATATGAAATGCATGACA 57.054 33.333 0.00 4.07 40.58 3.58
116 117 7.519032 TGACATGATATGAAATGCATGACAT 57.481 32.000 18.34 18.34 40.58 3.06
117 118 7.367285 TGACATGATATGAAATGCATGACATG 58.633 34.615 21.41 11.27 45.76 3.21
131 132 5.908916 CATGACATGCAAACAAATGACAA 57.091 34.783 1.71 0.00 33.42 3.18
132 133 5.911421 CATGACATGCAAACAAATGACAAG 58.089 37.500 1.71 0.00 33.42 3.16
133 134 4.370049 TGACATGCAAACAAATGACAAGG 58.630 39.130 0.00 0.00 0.00 3.61
134 135 3.132925 ACATGCAAACAAATGACAAGGC 58.867 40.909 0.00 0.00 0.00 4.35
135 136 2.975732 TGCAAACAAATGACAAGGCA 57.024 40.000 0.00 0.00 0.00 4.75
136 137 3.257469 TGCAAACAAATGACAAGGCAA 57.743 38.095 0.00 0.00 0.00 4.52
137 138 2.935201 TGCAAACAAATGACAAGGCAAC 59.065 40.909 0.00 0.00 0.00 4.17
138 139 2.935201 GCAAACAAATGACAAGGCAACA 59.065 40.909 0.00 0.00 41.41 3.33
139 140 3.373439 GCAAACAAATGACAAGGCAACAA 59.627 39.130 0.00 0.00 41.41 2.83
140 141 4.727448 GCAAACAAATGACAAGGCAACAAC 60.727 41.667 0.00 0.00 41.41 3.32
141 142 3.883830 ACAAATGACAAGGCAACAACA 57.116 38.095 0.00 0.00 41.41 3.33
142 143 3.784338 ACAAATGACAAGGCAACAACAG 58.216 40.909 0.00 0.00 41.41 3.16
143 144 2.514205 AATGACAAGGCAACAACAGC 57.486 45.000 0.00 0.00 41.41 4.40
144 145 0.311790 ATGACAAGGCAACAACAGCG 59.688 50.000 0.00 0.00 41.41 5.18
145 146 0.746204 TGACAAGGCAACAACAGCGA 60.746 50.000 0.00 0.00 41.41 4.93
146 147 0.380378 GACAAGGCAACAACAGCGAA 59.620 50.000 0.00 0.00 41.41 4.70
147 148 1.001378 GACAAGGCAACAACAGCGAAT 60.001 47.619 0.00 0.00 41.41 3.34
148 149 2.225491 GACAAGGCAACAACAGCGAATA 59.775 45.455 0.00 0.00 41.41 1.75
149 150 2.621055 ACAAGGCAACAACAGCGAATAA 59.379 40.909 0.00 0.00 41.41 1.40
150 151 3.255642 ACAAGGCAACAACAGCGAATAAT 59.744 39.130 0.00 0.00 41.41 1.28
151 152 4.236935 CAAGGCAACAACAGCGAATAATT 58.763 39.130 0.00 0.00 41.41 1.40
152 153 3.836949 AGGCAACAACAGCGAATAATTG 58.163 40.909 0.00 0.00 41.41 2.32
153 154 2.923020 GGCAACAACAGCGAATAATTGG 59.077 45.455 0.00 0.00 0.00 3.16
154 155 3.366883 GGCAACAACAGCGAATAATTGGA 60.367 43.478 0.00 0.00 0.00 3.53
155 156 4.233789 GCAACAACAGCGAATAATTGGAA 58.766 39.130 0.00 0.00 0.00 3.53
156 157 4.324402 GCAACAACAGCGAATAATTGGAAG 59.676 41.667 0.00 0.00 0.00 3.46
157 158 5.698832 CAACAACAGCGAATAATTGGAAGA 58.301 37.500 0.00 0.00 0.00 2.87
158 159 5.296813 ACAACAGCGAATAATTGGAAGAC 57.703 39.130 0.00 0.00 0.00 3.01
159 160 4.759693 ACAACAGCGAATAATTGGAAGACA 59.240 37.500 0.00 0.00 0.00 3.41
160 161 4.946784 ACAGCGAATAATTGGAAGACAC 57.053 40.909 0.00 0.00 0.00 3.67
161 162 3.689649 ACAGCGAATAATTGGAAGACACC 59.310 43.478 0.00 0.00 0.00 4.16
162 163 3.941483 CAGCGAATAATTGGAAGACACCT 59.059 43.478 0.00 0.00 0.00 4.00
163 164 3.941483 AGCGAATAATTGGAAGACACCTG 59.059 43.478 0.00 0.00 0.00 4.00
164 165 3.938963 GCGAATAATTGGAAGACACCTGA 59.061 43.478 0.00 0.00 0.00 3.86
165 166 4.201822 GCGAATAATTGGAAGACACCTGAC 60.202 45.833 0.00 0.00 0.00 3.51
166 167 4.032900 CGAATAATTGGAAGACACCTGACG 59.967 45.833 0.00 0.00 0.00 4.35
167 168 1.523758 AATTGGAAGACACCTGACGC 58.476 50.000 0.00 0.00 0.00 5.19
168 169 0.396435 ATTGGAAGACACCTGACGCA 59.604 50.000 0.00 0.00 0.00 5.24
169 170 0.179234 TTGGAAGACACCTGACGCAA 59.821 50.000 0.00 0.00 0.00 4.85
170 171 0.531974 TGGAAGACACCTGACGCAAC 60.532 55.000 0.00 0.00 0.00 4.17
171 172 1.557443 GGAAGACACCTGACGCAACG 61.557 60.000 0.00 0.00 0.00 4.10
172 173 1.557443 GAAGACACCTGACGCAACGG 61.557 60.000 0.00 0.00 0.00 4.44
173 174 2.279918 GACACCTGACGCAACGGT 60.280 61.111 0.00 0.00 0.00 4.83
174 175 2.279918 ACACCTGACGCAACGGTC 60.280 61.111 0.00 0.00 37.45 4.79
175 176 2.029073 CACCTGACGCAACGGTCT 59.971 61.111 0.00 0.00 37.81 3.85
176 177 2.022129 CACCTGACGCAACGGTCTC 61.022 63.158 0.00 0.00 37.81 3.36
177 178 2.805353 CCTGACGCAACGGTCTCG 60.805 66.667 0.00 1.31 43.02 4.04
178 179 2.805353 CTGACGCAACGGTCTCGG 60.805 66.667 6.87 0.00 41.39 4.63
179 180 4.351938 TGACGCAACGGTCTCGGG 62.352 66.667 6.87 0.00 41.39 5.14
180 181 4.047059 GACGCAACGGTCTCGGGA 62.047 66.667 6.87 0.00 41.39 5.14
181 182 4.353437 ACGCAACGGTCTCGGGAC 62.353 66.667 6.97 6.97 41.39 4.46
194 195 4.948257 GGGACGTTACACCCCATC 57.052 61.111 4.43 0.00 40.19 3.51
195 196 1.222661 GGGACGTTACACCCCATCC 59.777 63.158 4.43 0.00 40.19 3.51
196 197 1.222661 GGACGTTACACCCCATCCC 59.777 63.158 0.00 0.00 0.00 3.85
197 198 1.153509 GACGTTACACCCCATCCCG 60.154 63.158 0.00 0.00 0.00 5.14
198 199 2.188469 CGTTACACCCCATCCCGG 59.812 66.667 0.00 0.00 0.00 5.73
199 200 2.124445 GTTACACCCCATCCCGGC 60.124 66.667 0.00 0.00 0.00 6.13
200 201 2.285818 TTACACCCCATCCCGGCT 60.286 61.111 0.00 0.00 0.00 5.52
201 202 1.926489 TTACACCCCATCCCGGCTT 60.926 57.895 0.00 0.00 0.00 4.35
202 203 1.917336 TTACACCCCATCCCGGCTTC 61.917 60.000 0.00 0.00 0.00 3.86
203 204 4.856801 CACCCCATCCCGGCTTCG 62.857 72.222 0.00 0.00 0.00 3.79
205 206 4.109675 CCCCATCCCGGCTTCGTT 62.110 66.667 0.00 0.00 0.00 3.85
206 207 2.045340 CCCATCCCGGCTTCGTTT 60.045 61.111 0.00 0.00 0.00 3.60
207 208 2.406616 CCCATCCCGGCTTCGTTTG 61.407 63.158 0.00 0.00 0.00 2.93
208 209 1.674322 CCATCCCGGCTTCGTTTGT 60.674 57.895 0.00 0.00 0.00 2.83
209 210 1.501741 CATCCCGGCTTCGTTTGTG 59.498 57.895 0.00 0.00 0.00 3.33
210 211 1.072505 ATCCCGGCTTCGTTTGTGT 59.927 52.632 0.00 0.00 0.00 3.72
211 212 0.322322 ATCCCGGCTTCGTTTGTGTA 59.678 50.000 0.00 0.00 0.00 2.90
212 213 0.320073 TCCCGGCTTCGTTTGTGTAG 60.320 55.000 0.00 0.00 0.00 2.74
213 214 0.320073 CCCGGCTTCGTTTGTGTAGA 60.320 55.000 0.00 0.00 0.00 2.59
214 215 1.674817 CCCGGCTTCGTTTGTGTAGAT 60.675 52.381 0.00 0.00 0.00 1.98
215 216 1.659098 CCGGCTTCGTTTGTGTAGATC 59.341 52.381 0.00 0.00 0.00 2.75
216 217 1.659098 CGGCTTCGTTTGTGTAGATCC 59.341 52.381 0.00 0.00 0.00 3.36
217 218 2.674177 CGGCTTCGTTTGTGTAGATCCT 60.674 50.000 0.00 0.00 0.00 3.24
218 219 3.335579 GGCTTCGTTTGTGTAGATCCTT 58.664 45.455 0.00 0.00 0.00 3.36
219 220 3.751698 GGCTTCGTTTGTGTAGATCCTTT 59.248 43.478 0.00 0.00 0.00 3.11
220 221 4.933400 GGCTTCGTTTGTGTAGATCCTTTA 59.067 41.667 0.00 0.00 0.00 1.85
221 222 5.063564 GGCTTCGTTTGTGTAGATCCTTTAG 59.936 44.000 0.00 0.00 0.00 1.85
222 223 5.446073 GCTTCGTTTGTGTAGATCCTTTAGC 60.446 44.000 0.00 0.00 0.00 3.09
223 224 5.401531 TCGTTTGTGTAGATCCTTTAGCT 57.598 39.130 0.00 0.00 0.00 3.32
224 225 6.519679 TCGTTTGTGTAGATCCTTTAGCTA 57.480 37.500 0.00 0.00 0.00 3.32
225 226 6.927416 TCGTTTGTGTAGATCCTTTAGCTAA 58.073 36.000 0.86 0.86 0.00 3.09
226 227 7.553334 TCGTTTGTGTAGATCCTTTAGCTAAT 58.447 34.615 7.08 0.00 0.00 1.73
227 228 7.705325 TCGTTTGTGTAGATCCTTTAGCTAATC 59.295 37.037 7.08 1.72 0.00 1.75
228 229 7.707035 CGTTTGTGTAGATCCTTTAGCTAATCT 59.293 37.037 7.08 9.55 33.27 2.40
229 230 9.036671 GTTTGTGTAGATCCTTTAGCTAATCTC 57.963 37.037 7.08 2.46 31.25 2.75
230 231 7.898014 TGTGTAGATCCTTTAGCTAATCTCA 57.102 36.000 7.08 5.26 31.25 3.27
231 232 8.306313 TGTGTAGATCCTTTAGCTAATCTCAA 57.694 34.615 7.08 0.00 31.25 3.02
232 233 8.928448 TGTGTAGATCCTTTAGCTAATCTCAAT 58.072 33.333 7.08 0.00 31.25 2.57
233 234 9.771534 GTGTAGATCCTTTAGCTAATCTCAATT 57.228 33.333 7.08 0.00 31.25 2.32
241 242 9.837525 CCTTTAGCTAATCTCAATTAATGATGC 57.162 33.333 7.08 0.00 37.44 3.91
244 245 7.812690 AGCTAATCTCAATTAATGATGCACA 57.187 32.000 0.00 0.00 37.44 4.57
245 246 8.229253 AGCTAATCTCAATTAATGATGCACAA 57.771 30.769 0.00 0.00 37.44 3.33
246 247 8.350722 AGCTAATCTCAATTAATGATGCACAAG 58.649 33.333 0.00 0.00 37.44 3.16
247 248 8.347771 GCTAATCTCAATTAATGATGCACAAGA 58.652 33.333 0.00 0.00 37.44 3.02
250 251 9.932207 AATCTCAATTAATGATGCACAAGAAAA 57.068 25.926 0.00 0.00 37.44 2.29
251 252 9.932207 ATCTCAATTAATGATGCACAAGAAAAA 57.068 25.926 0.00 0.00 37.44 1.94
292 293 9.849166 TTTAATCGAACTGAAACTTTTCTTTGT 57.151 25.926 3.48 0.00 38.02 2.83
293 294 7.971004 AATCGAACTGAAACTTTTCTTTGTC 57.029 32.000 3.48 0.00 38.02 3.18
294 295 5.875930 TCGAACTGAAACTTTTCTTTGTCC 58.124 37.500 3.48 0.00 38.02 4.02
295 296 5.646360 TCGAACTGAAACTTTTCTTTGTCCT 59.354 36.000 3.48 0.00 38.02 3.85
296 297 6.819649 TCGAACTGAAACTTTTCTTTGTCCTA 59.180 34.615 3.48 0.00 38.02 2.94
297 298 6.905609 CGAACTGAAACTTTTCTTTGTCCTAC 59.094 38.462 3.48 0.00 38.02 3.18
298 299 7.201617 CGAACTGAAACTTTTCTTTGTCCTACT 60.202 37.037 3.48 0.00 38.02 2.57
299 300 7.555306 ACTGAAACTTTTCTTTGTCCTACTC 57.445 36.000 3.48 0.00 38.02 2.59
300 301 7.110155 ACTGAAACTTTTCTTTGTCCTACTCA 58.890 34.615 3.48 0.00 38.02 3.41
301 302 7.775561 ACTGAAACTTTTCTTTGTCCTACTCAT 59.224 33.333 3.48 0.00 38.02 2.90
302 303 8.519799 TGAAACTTTTCTTTGTCCTACTCATT 57.480 30.769 3.48 0.00 38.02 2.57
303 304 8.621286 TGAAACTTTTCTTTGTCCTACTCATTC 58.379 33.333 3.48 0.00 38.02 2.67
304 305 7.511959 AACTTTTCTTTGTCCTACTCATTCC 57.488 36.000 0.00 0.00 0.00 3.01
305 306 6.004574 ACTTTTCTTTGTCCTACTCATTCCC 58.995 40.000 0.00 0.00 0.00 3.97
306 307 5.843019 TTTCTTTGTCCTACTCATTCCCT 57.157 39.130 0.00 0.00 0.00 4.20
307 308 5.843019 TTCTTTGTCCTACTCATTCCCTT 57.157 39.130 0.00 0.00 0.00 3.95
308 309 6.945636 TTCTTTGTCCTACTCATTCCCTTA 57.054 37.500 0.00 0.00 0.00 2.69
309 310 6.945636 TCTTTGTCCTACTCATTCCCTTAA 57.054 37.500 0.00 0.00 0.00 1.85
310 311 7.324388 TCTTTGTCCTACTCATTCCCTTAAA 57.676 36.000 0.00 0.00 0.00 1.52
311 312 7.751646 TCTTTGTCCTACTCATTCCCTTAAAA 58.248 34.615 0.00 0.00 0.00 1.52
312 313 7.664318 TCTTTGTCCTACTCATTCCCTTAAAAC 59.336 37.037 0.00 0.00 0.00 2.43
313 314 6.442541 TGTCCTACTCATTCCCTTAAAACA 57.557 37.500 0.00 0.00 0.00 2.83
314 315 6.843752 TGTCCTACTCATTCCCTTAAAACAA 58.156 36.000 0.00 0.00 0.00 2.83
315 316 7.291566 TGTCCTACTCATTCCCTTAAAACAAA 58.708 34.615 0.00 0.00 0.00 2.83
316 317 7.780745 TGTCCTACTCATTCCCTTAAAACAAAA 59.219 33.333 0.00 0.00 0.00 2.44
317 318 8.635328 GTCCTACTCATTCCCTTAAAACAAAAA 58.365 33.333 0.00 0.00 0.00 1.94
352 353 9.767684 TTAACTTATGAAAAGCATCATGTAACG 57.232 29.630 9.21 0.00 40.21 3.18
353 354 7.377766 ACTTATGAAAAGCATCATGTAACGT 57.622 32.000 9.21 0.00 40.21 3.99
354 355 7.816640 ACTTATGAAAAGCATCATGTAACGTT 58.183 30.769 5.88 5.88 40.21 3.99
355 356 7.750458 ACTTATGAAAAGCATCATGTAACGTTG 59.250 33.333 11.99 0.00 40.21 4.10
356 357 4.793071 TGAAAAGCATCATGTAACGTTGG 58.207 39.130 11.99 0.00 0.00 3.77
357 358 4.517075 TGAAAAGCATCATGTAACGTTGGA 59.483 37.500 11.99 3.68 0.00 3.53
358 359 4.419522 AAAGCATCATGTAACGTTGGAC 57.580 40.909 11.99 2.19 0.00 4.02
359 360 9.878273 ATGAAAAGCATCATGTAACGTTGGACG 62.878 40.741 11.99 0.00 41.94 4.79
370 371 2.363788 CGTTGGACGGAAGAATCAGA 57.636 50.000 0.00 0.00 38.08 3.27
371 372 2.893637 CGTTGGACGGAAGAATCAGAT 58.106 47.619 0.00 0.00 38.08 2.90
372 373 3.262420 CGTTGGACGGAAGAATCAGATT 58.738 45.455 0.00 0.00 38.08 2.40
373 374 4.430007 CGTTGGACGGAAGAATCAGATTA 58.570 43.478 0.00 0.00 38.08 1.75
374 375 4.868171 CGTTGGACGGAAGAATCAGATTAA 59.132 41.667 0.00 0.00 38.08 1.40
375 376 5.523916 CGTTGGACGGAAGAATCAGATTAAT 59.476 40.000 0.00 0.00 38.08 1.40
376 377 6.037172 CGTTGGACGGAAGAATCAGATTAATT 59.963 38.462 0.00 0.00 38.08 1.40
377 378 7.223971 CGTTGGACGGAAGAATCAGATTAATTA 59.776 37.037 0.00 0.00 38.08 1.40
378 379 9.057089 GTTGGACGGAAGAATCAGATTAATTAT 57.943 33.333 0.00 0.00 0.00 1.28
380 381 9.929180 TGGACGGAAGAATCAGATTAATTATAG 57.071 33.333 0.00 0.00 0.00 1.31
381 382 9.930693 GGACGGAAGAATCAGATTAATTATAGT 57.069 33.333 0.00 0.00 0.00 2.12
395 396 9.845305 GATTAATTATAGTGTCGTTCTTTTCCG 57.155 33.333 0.00 0.00 0.00 4.30
396 397 5.713822 ATTATAGTGTCGTTCTTTTCCGC 57.286 39.130 0.00 0.00 0.00 5.54
397 398 2.806608 TAGTGTCGTTCTTTTCCGCT 57.193 45.000 0.00 0.00 0.00 5.52
398 399 1.949465 AGTGTCGTTCTTTTCCGCTT 58.051 45.000 0.00 0.00 0.00 4.68
399 400 2.285977 AGTGTCGTTCTTTTCCGCTTT 58.714 42.857 0.00 0.00 0.00 3.51
400 401 2.681344 AGTGTCGTTCTTTTCCGCTTTT 59.319 40.909 0.00 0.00 0.00 2.27
401 402 2.781646 GTGTCGTTCTTTTCCGCTTTTG 59.218 45.455 0.00 0.00 0.00 2.44
402 403 2.678836 TGTCGTTCTTTTCCGCTTTTGA 59.321 40.909 0.00 0.00 0.00 2.69
403 404 3.314080 TGTCGTTCTTTTCCGCTTTTGAT 59.686 39.130 0.00 0.00 0.00 2.57
404 405 4.201970 TGTCGTTCTTTTCCGCTTTTGATT 60.202 37.500 0.00 0.00 0.00 2.57
405 406 5.007823 TGTCGTTCTTTTCCGCTTTTGATTA 59.992 36.000 0.00 0.00 0.00 1.75
406 407 6.084277 GTCGTTCTTTTCCGCTTTTGATTAT 58.916 36.000 0.00 0.00 0.00 1.28
407 408 6.248629 GTCGTTCTTTTCCGCTTTTGATTATC 59.751 38.462 0.00 0.00 0.00 1.75
408 409 5.225129 CGTTCTTTTCCGCTTTTGATTATCG 59.775 40.000 0.00 0.00 0.00 2.92
409 410 4.658071 TCTTTTCCGCTTTTGATTATCGC 58.342 39.130 0.00 0.00 0.00 4.58
410 411 4.155099 TCTTTTCCGCTTTTGATTATCGCA 59.845 37.500 0.00 0.00 0.00 5.10
411 412 4.630894 TTTCCGCTTTTGATTATCGCAT 57.369 36.364 0.00 0.00 0.00 4.73
412 413 3.607422 TCCGCTTTTGATTATCGCATG 57.393 42.857 0.00 0.00 0.00 4.06
413 414 2.942376 TCCGCTTTTGATTATCGCATGT 59.058 40.909 0.00 0.00 0.00 3.21
414 415 3.038017 CCGCTTTTGATTATCGCATGTG 58.962 45.455 0.00 0.00 0.00 3.21
415 416 3.487376 CCGCTTTTGATTATCGCATGTGT 60.487 43.478 6.09 0.00 0.00 3.72
416 417 4.260579 CCGCTTTTGATTATCGCATGTGTA 60.261 41.667 6.09 0.00 0.00 2.90
417 418 4.900182 CGCTTTTGATTATCGCATGTGTAG 59.100 41.667 6.09 0.00 0.00 2.74
418 419 5.502382 CGCTTTTGATTATCGCATGTGTAGT 60.502 40.000 6.09 0.00 0.00 2.73
419 420 5.678483 GCTTTTGATTATCGCATGTGTAGTG 59.322 40.000 6.09 0.00 0.00 2.74
420 421 6.675486 GCTTTTGATTATCGCATGTGTAGTGT 60.675 38.462 6.09 0.00 0.00 3.55
421 422 5.717038 TTGATTATCGCATGTGTAGTGTG 57.283 39.130 6.09 0.00 0.00 3.82
422 423 4.754322 TGATTATCGCATGTGTAGTGTGT 58.246 39.130 6.09 0.00 0.00 3.72
423 424 5.175127 TGATTATCGCATGTGTAGTGTGTT 58.825 37.500 6.09 0.00 0.00 3.32
424 425 5.641636 TGATTATCGCATGTGTAGTGTGTTT 59.358 36.000 6.09 0.00 0.00 2.83
425 426 6.814146 TGATTATCGCATGTGTAGTGTGTTTA 59.186 34.615 6.09 0.00 0.00 2.01
426 427 7.332182 TGATTATCGCATGTGTAGTGTGTTTAA 59.668 33.333 6.09 0.00 0.00 1.52
427 428 5.933187 ATCGCATGTGTAGTGTGTTTAAA 57.067 34.783 6.09 0.00 0.00 1.52
428 429 5.933187 TCGCATGTGTAGTGTGTTTAAAT 57.067 34.783 6.09 0.00 0.00 1.40
429 430 7.603963 ATCGCATGTGTAGTGTGTTTAAATA 57.396 32.000 6.09 0.00 0.00 1.40
430 431 6.823531 TCGCATGTGTAGTGTGTTTAAATAC 58.176 36.000 6.09 8.05 0.00 1.89
431 432 6.019152 CGCATGTGTAGTGTGTTTAAATACC 58.981 40.000 11.97 4.50 0.00 2.73
432 433 6.128391 CGCATGTGTAGTGTGTTTAAATACCT 60.128 38.462 11.97 10.67 0.00 3.08
433 434 7.241376 GCATGTGTAGTGTGTTTAAATACCTC 58.759 38.462 11.97 6.08 0.00 3.85
434 435 7.094975 GCATGTGTAGTGTGTTTAAATACCTCA 60.095 37.037 11.97 4.94 0.00 3.86
435 436 8.779303 CATGTGTAGTGTGTTTAAATACCTCAA 58.221 33.333 11.97 0.00 0.00 3.02
436 437 8.373048 TGTGTAGTGTGTTTAAATACCTCAAG 57.627 34.615 11.97 0.00 0.00 3.02
437 438 8.205512 TGTGTAGTGTGTTTAAATACCTCAAGA 58.794 33.333 11.97 0.00 0.00 3.02
438 439 8.709646 GTGTAGTGTGTTTAAATACCTCAAGAG 58.290 37.037 11.97 0.00 0.00 2.85
439 440 6.803154 AGTGTGTTTAAATACCTCAAGAGC 57.197 37.500 11.97 0.00 0.00 4.09
440 441 5.705905 AGTGTGTTTAAATACCTCAAGAGCC 59.294 40.000 11.97 0.00 0.00 4.70
441 442 5.705905 GTGTGTTTAAATACCTCAAGAGCCT 59.294 40.000 11.97 0.00 0.00 4.58
442 443 6.206829 GTGTGTTTAAATACCTCAAGAGCCTT 59.793 38.462 11.97 0.00 0.00 4.35
443 444 7.389607 GTGTGTTTAAATACCTCAAGAGCCTTA 59.610 37.037 11.97 0.00 0.00 2.69
444 445 7.940137 TGTGTTTAAATACCTCAAGAGCCTTAA 59.060 33.333 11.97 0.00 0.00 1.85
445 446 8.789762 GTGTTTAAATACCTCAAGAGCCTTAAA 58.210 33.333 3.84 0.00 0.00 1.52
446 447 9.357161 TGTTTAAATACCTCAAGAGCCTTAAAA 57.643 29.630 0.00 0.00 0.00 1.52
451 452 9.920946 AAATACCTCAAGAGCCTTAAAATATCA 57.079 29.630 0.00 0.00 0.00 2.15
454 455 8.829373 ACCTCAAGAGCCTTAAAATATCATTT 57.171 30.769 0.00 0.00 0.00 2.32
455 456 9.920946 ACCTCAAGAGCCTTAAAATATCATTTA 57.079 29.630 0.00 0.00 0.00 1.40
461 462 9.082313 AGAGCCTTAAAATATCATTTATGTGGG 57.918 33.333 0.00 0.00 0.00 4.61
462 463 8.782137 AGCCTTAAAATATCATTTATGTGGGT 57.218 30.769 0.00 0.00 0.00 4.51
463 464 9.212593 AGCCTTAAAATATCATTTATGTGGGTT 57.787 29.630 0.00 0.00 0.00 4.11
464 465 9.476202 GCCTTAAAATATCATTTATGTGGGTTC 57.524 33.333 0.00 0.00 0.00 3.62
465 466 9.981114 CCTTAAAATATCATTTATGTGGGTTCC 57.019 33.333 0.00 0.00 0.00 3.62
468 469 7.839680 AAATATCATTTATGTGGGTTCCTCC 57.160 36.000 0.00 0.00 0.00 4.30
469 470 6.786843 ATATCATTTATGTGGGTTCCTCCT 57.213 37.500 0.00 0.00 36.25 3.69
470 471 7.888514 ATATCATTTATGTGGGTTCCTCCTA 57.111 36.000 0.00 0.00 36.25 2.94
471 472 6.590656 ATCATTTATGTGGGTTCCTCCTAA 57.409 37.500 0.00 0.00 36.25 2.69
472 473 6.395780 TCATTTATGTGGGTTCCTCCTAAA 57.604 37.500 0.00 0.00 36.25 1.85
473 474 6.795590 TCATTTATGTGGGTTCCTCCTAAAA 58.204 36.000 0.00 0.00 36.25 1.52
474 475 7.418378 TCATTTATGTGGGTTCCTCCTAAAAT 58.582 34.615 0.00 0.00 36.25 1.82
475 476 8.561769 TCATTTATGTGGGTTCCTCCTAAAATA 58.438 33.333 0.00 0.00 36.25 1.40
476 477 9.367160 CATTTATGTGGGTTCCTCCTAAAATAT 57.633 33.333 0.00 0.00 36.25 1.28
477 478 8.990163 TTTATGTGGGTTCCTCCTAAAATATC 57.010 34.615 0.00 0.00 36.25 1.63
478 479 6.848562 ATGTGGGTTCCTCCTAAAATATCT 57.151 37.500 0.00 0.00 36.25 1.98
479 480 6.248569 TGTGGGTTCCTCCTAAAATATCTC 57.751 41.667 0.00 0.00 36.25 2.75
480 481 5.729229 TGTGGGTTCCTCCTAAAATATCTCA 59.271 40.000 0.00 0.00 36.25 3.27
481 482 6.389869 TGTGGGTTCCTCCTAAAATATCTCAT 59.610 38.462 0.00 0.00 36.25 2.90
482 483 7.091993 TGTGGGTTCCTCCTAAAATATCTCATT 60.092 37.037 0.00 0.00 36.25 2.57
483 484 7.780271 GTGGGTTCCTCCTAAAATATCTCATTT 59.220 37.037 0.00 0.00 36.25 2.32
484 485 7.998964 TGGGTTCCTCCTAAAATATCTCATTTC 59.001 37.037 0.00 0.00 36.25 2.17
485 486 7.448777 GGGTTCCTCCTAAAATATCTCATTTCC 59.551 40.741 0.00 0.00 36.25 3.13
486 487 8.221251 GGTTCCTCCTAAAATATCTCATTTCCT 58.779 37.037 0.00 0.00 0.00 3.36
487 488 9.634021 GTTCCTCCTAAAATATCTCATTTCCTT 57.366 33.333 0.00 0.00 0.00 3.36
500 501 7.831691 TCTCATTTCCTTTACACCATTTTGA 57.168 32.000 0.00 0.00 0.00 2.69
501 502 7.657336 TCTCATTTCCTTTACACCATTTTGAC 58.343 34.615 0.00 0.00 0.00 3.18
502 503 6.442952 TCATTTCCTTTACACCATTTTGACG 58.557 36.000 0.00 0.00 0.00 4.35
503 504 5.838531 TTTCCTTTACACCATTTTGACGT 57.161 34.783 0.00 0.00 0.00 4.34
504 505 5.838531 TTCCTTTACACCATTTTGACGTT 57.161 34.783 0.00 0.00 0.00 3.99
505 506 5.427036 TCCTTTACACCATTTTGACGTTC 57.573 39.130 0.00 0.00 0.00 3.95
506 507 5.127491 TCCTTTACACCATTTTGACGTTCT 58.873 37.500 0.00 0.00 0.00 3.01
507 508 5.008217 TCCTTTACACCATTTTGACGTTCTG 59.992 40.000 0.00 0.00 0.00 3.02
508 509 5.220970 CCTTTACACCATTTTGACGTTCTGT 60.221 40.000 0.00 0.00 0.00 3.41
522 523 4.950050 ACGTTCTGTCATCCAATCCTATC 58.050 43.478 0.00 0.00 0.00 2.08
523 524 4.405680 ACGTTCTGTCATCCAATCCTATCA 59.594 41.667 0.00 0.00 0.00 2.15
524 525 4.987285 CGTTCTGTCATCCAATCCTATCAG 59.013 45.833 0.00 0.00 0.00 2.90
525 526 5.221322 CGTTCTGTCATCCAATCCTATCAGA 60.221 44.000 0.00 0.00 0.00 3.27
526 527 5.798125 TCTGTCATCCAATCCTATCAGAC 57.202 43.478 0.00 0.00 0.00 3.51
527 528 5.462240 TCTGTCATCCAATCCTATCAGACT 58.538 41.667 0.00 0.00 0.00 3.24
528 529 6.614657 TCTGTCATCCAATCCTATCAGACTA 58.385 40.000 0.00 0.00 0.00 2.59
529 530 7.244558 TCTGTCATCCAATCCTATCAGACTAT 58.755 38.462 0.00 0.00 0.00 2.12
530 531 7.178097 TCTGTCATCCAATCCTATCAGACTATG 59.822 40.741 0.00 0.00 0.00 2.23
531 532 6.784473 TGTCATCCAATCCTATCAGACTATGT 59.216 38.462 0.00 0.00 0.00 2.29
532 533 7.039434 TGTCATCCAATCCTATCAGACTATGTC 60.039 40.741 0.00 0.00 0.00 3.06
533 534 7.012607 TCATCCAATCCTATCAGACTATGTCA 58.987 38.462 0.46 0.00 34.60 3.58
534 535 6.907853 TCCAATCCTATCAGACTATGTCAG 57.092 41.667 0.46 0.00 34.60 3.51
535 536 6.614657 TCCAATCCTATCAGACTATGTCAGA 58.385 40.000 0.46 0.00 34.60 3.27
536 537 6.491745 TCCAATCCTATCAGACTATGTCAGAC 59.508 42.308 0.00 0.00 31.35 3.51
537 538 6.377780 CAATCCTATCAGACTATGTCAGACG 58.622 44.000 0.00 0.00 31.35 4.18
538 539 5.037383 TCCTATCAGACTATGTCAGACGT 57.963 43.478 0.00 0.00 31.35 4.34
539 540 4.816925 TCCTATCAGACTATGTCAGACGTG 59.183 45.833 5.44 0.00 31.35 4.49
540 541 4.023622 CCTATCAGACTATGTCAGACGTGG 60.024 50.000 5.44 5.01 31.35 4.94
541 542 2.092323 TCAGACTATGTCAGACGTGGG 58.908 52.381 10.65 4.04 34.60 4.61
542 543 1.819288 CAGACTATGTCAGACGTGGGT 59.181 52.381 10.65 6.94 34.60 4.51
543 544 2.093106 AGACTATGTCAGACGTGGGTC 58.907 52.381 10.65 14.16 43.76 4.46
553 554 4.221422 CGTGGGTCGATGCGGGAT 62.221 66.667 0.00 0.00 42.86 3.85
554 555 2.588877 GTGGGTCGATGCGGGATG 60.589 66.667 0.00 0.00 0.00 3.51
555 556 3.860605 TGGGTCGATGCGGGATGG 61.861 66.667 0.00 0.00 0.00 3.51
556 557 4.626081 GGGTCGATGCGGGATGGG 62.626 72.222 0.00 0.00 0.00 4.00
560 561 4.648626 CGATGCGGGATGGGCCAT 62.649 66.667 21.39 21.39 38.95 4.40
561 562 2.756400 GATGCGGGATGGGCCATA 59.244 61.111 21.26 3.17 38.95 2.74
562 563 1.377725 GATGCGGGATGGGCCATAG 60.378 63.158 21.26 14.88 38.95 2.23
563 564 1.841302 GATGCGGGATGGGCCATAGA 61.841 60.000 21.26 1.78 38.95 1.98
564 565 1.426251 ATGCGGGATGGGCCATAGAA 61.426 55.000 21.26 9.18 38.95 2.10
565 566 1.150536 GCGGGATGGGCCATAGAAA 59.849 57.895 21.26 0.00 38.95 2.52
566 567 0.467290 GCGGGATGGGCCATAGAAAA 60.467 55.000 21.26 0.00 38.95 2.29
567 568 2.026905 GCGGGATGGGCCATAGAAAAA 61.027 52.381 21.26 0.00 38.95 1.94
589 590 3.724508 AAGGCACTCACGATATCTCTG 57.275 47.619 0.34 0.00 38.49 3.35
591 592 2.360483 AGGCACTCACGATATCTCTGTG 59.640 50.000 0.34 2.22 34.96 3.66
786 788 0.888619 GTTGGGCCTCTTTGCTTACC 59.111 55.000 4.53 0.00 0.00 2.85
855 864 5.447624 ACCATATGTGAATGTGATGCATG 57.552 39.130 2.46 0.00 37.96 4.06
898 907 2.365941 TGTAGGTGACGGAATGACACAA 59.634 45.455 0.00 0.00 43.72 3.33
916 925 5.111293 ACACAATGCTCCTTTCAAAAAGTG 58.889 37.500 0.00 0.00 0.00 3.16
973 982 6.829229 TCTAGTATGAACAGGTCGAGAAAA 57.171 37.500 0.00 0.00 0.00 2.29
1032 1041 1.488393 CCCTTTCCTCAGTCATCCTCC 59.512 57.143 0.00 0.00 0.00 4.30
1058 1067 1.719063 TTCTCAGGGCTTTGTGGGCT 61.719 55.000 0.00 0.00 0.00 5.19
1072 1081 1.210478 GTGGGCTCTGCTTTCCATCTA 59.790 52.381 0.00 0.00 0.00 1.98
1079 1088 4.034975 GCTCTGCTTTCCATCTACATGAAC 59.965 45.833 0.00 0.00 30.57 3.18
1174 1184 4.803426 CGTGCCTCGACTGCTCCC 62.803 72.222 4.04 0.00 42.86 4.30
1188 1198 1.852309 TGCTCCCATCTCTCTCTCTCT 59.148 52.381 0.00 0.00 0.00 3.10
1189 1199 2.158623 TGCTCCCATCTCTCTCTCTCTC 60.159 54.545 0.00 0.00 0.00 3.20
1190 1200 2.107204 GCTCCCATCTCTCTCTCTCTCT 59.893 54.545 0.00 0.00 0.00 3.10
1191 1201 3.808618 GCTCCCATCTCTCTCTCTCTCTC 60.809 56.522 0.00 0.00 0.00 3.20
1192 1202 3.649981 CTCCCATCTCTCTCTCTCTCTCT 59.350 52.174 0.00 0.00 0.00 3.10
1193 1203 3.648067 TCCCATCTCTCTCTCTCTCTCTC 59.352 52.174 0.00 0.00 0.00 3.20
1221 1231 1.076777 CATCCCACTTCGCCCCATT 60.077 57.895 0.00 0.00 0.00 3.16
1226 1236 2.046285 CACTTCGCCCCATTGGACC 61.046 63.158 3.62 0.00 35.39 4.46
1336 1346 2.846206 TCTGTCCTATGGCATCCAGTTT 59.154 45.455 1.65 0.00 36.75 2.66
1383 1393 1.915141 AGCCACTGAGTTGGGATTTG 58.085 50.000 0.00 0.00 37.10 2.32
1390 1400 2.886523 CTGAGTTGGGATTTGCAGTCAA 59.113 45.455 3.94 0.00 0.00 3.18
1391 1401 3.499338 TGAGTTGGGATTTGCAGTCAAT 58.501 40.909 3.94 0.00 31.33 2.57
1442 1452 2.435069 AGATGCACTCAGCTTAGCAGAT 59.565 45.455 7.07 0.00 45.94 2.90
1447 1457 3.656066 TCAGCTTAGCAGATGAGCG 57.344 52.632 7.07 0.00 45.00 5.03
1455 1465 4.450419 GCTTAGCAGATGAGCGTCATAATT 59.550 41.667 0.00 0.00 37.20 1.40
1457 1467 3.801698 AGCAGATGAGCGTCATAATTGT 58.198 40.909 1.28 0.00 37.20 2.71
1461 1471 5.463392 GCAGATGAGCGTCATAATTGTCTAA 59.537 40.000 1.28 0.00 37.20 2.10
1462 1472 6.018751 GCAGATGAGCGTCATAATTGTCTAAA 60.019 38.462 1.28 0.00 37.20 1.85
1489 1499 9.566432 AACTCACTTGATTTTACTCTTCATTCT 57.434 29.630 0.00 0.00 0.00 2.40
1491 1501 7.810658 TCACTTGATTTTACTCTTCATTCTGC 58.189 34.615 0.00 0.00 0.00 4.26
1492 1502 7.445096 TCACTTGATTTTACTCTTCATTCTGCA 59.555 33.333 0.00 0.00 0.00 4.41
1493 1503 8.077991 CACTTGATTTTACTCTTCATTCTGCAA 58.922 33.333 0.00 0.00 0.00 4.08
1494 1504 8.078596 ACTTGATTTTACTCTTCATTCTGCAAC 58.921 33.333 0.00 0.00 0.00 4.17
1576 1588 3.496875 CTCGGAGCAGGAGCCATCG 62.497 68.421 0.00 0.00 43.56 3.84
1636 1648 1.045911 GTCATCTCCCGCTTCTCCCT 61.046 60.000 0.00 0.00 0.00 4.20
1666 1678 2.506217 GCTCGTGCGGTCAATCGA 60.506 61.111 0.00 0.00 0.00 3.59
1677 1689 0.463833 GTCAATCGATTTCGGGGGCT 60.464 55.000 8.21 0.00 40.29 5.19
1706 1718 1.529244 GCCACTGCACAGGAAGGTT 60.529 57.895 3.88 0.00 37.47 3.50
1733 1745 1.298014 GTTCTCCCTGTGGCTCCTG 59.702 63.158 0.00 0.00 0.00 3.86
1757 1769 1.007618 GGTAGTACGAGATGCCGCC 60.008 63.158 0.00 0.00 0.00 6.13
1774 1786 4.393155 CGGTGCCAGTGCTAGCCA 62.393 66.667 13.29 0.00 38.71 4.75
1775 1787 2.437359 GGTGCCAGTGCTAGCCAG 60.437 66.667 13.29 1.47 38.71 4.85
1820 1832 1.472728 GGCATACCGTTCTACCCACAG 60.473 57.143 0.00 0.00 0.00 3.66
2043 2055 1.377202 GACCGGGCTGCATTCAAGA 60.377 57.895 6.32 0.00 0.00 3.02
2068 2080 0.531090 TTCGTGGTCTTCGTTGTGGG 60.531 55.000 0.00 0.00 0.00 4.61
2089 2101 2.850828 AATCTGCTGGCTCCAAGGGC 62.851 60.000 0.00 0.00 0.00 5.19
2106 2118 1.102222 GGCGACCGACTCTGTATCCT 61.102 60.000 0.00 0.00 0.00 3.24
2156 2168 4.274421 TGACGAGATTCAGACGTATGAC 57.726 45.455 13.34 2.25 40.29 3.06
2194 2206 3.469008 TCGTGTCATTTTGGACTCTGT 57.531 42.857 0.00 0.00 38.61 3.41
2420 2432 5.489637 TGGCTACTTTGAACCCTATTTCCTA 59.510 40.000 0.00 0.00 0.00 2.94
2850 5078 6.037786 TCTTGCGATTAGGTATATCCAAGG 57.962 41.667 0.00 0.00 39.02 3.61
3167 6734 5.516339 GCATCCAGAAAATGAAATTGTACCG 59.484 40.000 0.00 0.00 36.10 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.033574 CCGACACTCCTATGTCCTCC 58.966 60.000 0.53 0.00 45.23 4.30
1 2 2.054232 TCCGACACTCCTATGTCCTC 57.946 55.000 0.53 0.00 45.23 3.71
3 4 2.803492 GCAATCCGACACTCCTATGTCC 60.803 54.545 0.53 0.00 45.23 4.02
4 5 2.159099 TGCAATCCGACACTCCTATGTC 60.159 50.000 0.00 0.00 44.68 3.06
6 7 2.602257 TGCAATCCGACACTCCTATG 57.398 50.000 0.00 0.00 0.00 2.23
8 9 3.071479 GTTTTGCAATCCGACACTCCTA 58.929 45.455 0.00 0.00 0.00 2.94
9 10 1.880027 GTTTTGCAATCCGACACTCCT 59.120 47.619 0.00 0.00 0.00 3.69
10 11 1.399727 CGTTTTGCAATCCGACACTCC 60.400 52.381 11.58 0.00 0.00 3.85
11 12 1.399727 CCGTTTTGCAATCCGACACTC 60.400 52.381 16.97 0.00 0.00 3.51
12 13 0.591170 CCGTTTTGCAATCCGACACT 59.409 50.000 16.97 0.00 0.00 3.55
13 14 0.589223 TCCGTTTTGCAATCCGACAC 59.411 50.000 16.97 0.95 0.00 3.67
14 15 0.589223 GTCCGTTTTGCAATCCGACA 59.411 50.000 16.97 3.67 0.00 4.35
15 16 0.589223 TGTCCGTTTTGCAATCCGAC 59.411 50.000 16.97 14.59 0.00 4.79
16 17 1.002251 GTTGTCCGTTTTGCAATCCGA 60.002 47.619 16.97 4.93 0.00 4.55
17 18 1.268794 TGTTGTCCGTTTTGCAATCCG 60.269 47.619 0.00 5.58 0.00 4.18
18 19 2.034053 TCTGTTGTCCGTTTTGCAATCC 59.966 45.455 0.00 0.00 0.00 3.01
19 20 3.003275 TCTCTGTTGTCCGTTTTGCAATC 59.997 43.478 0.00 0.00 0.00 2.67
20 21 2.948979 TCTCTGTTGTCCGTTTTGCAAT 59.051 40.909 0.00 0.00 0.00 3.56
21 22 2.360844 TCTCTGTTGTCCGTTTTGCAA 58.639 42.857 0.00 0.00 0.00 4.08
22 23 2.031258 TCTCTGTTGTCCGTTTTGCA 57.969 45.000 0.00 0.00 0.00 4.08
23 24 3.414549 TTTCTCTGTTGTCCGTTTTGC 57.585 42.857 0.00 0.00 0.00 3.68
24 25 4.207019 GCATTTTCTCTGTTGTCCGTTTTG 59.793 41.667 0.00 0.00 0.00 2.44
25 26 4.097892 AGCATTTTCTCTGTTGTCCGTTTT 59.902 37.500 0.00 0.00 0.00 2.43
26 27 3.632145 AGCATTTTCTCTGTTGTCCGTTT 59.368 39.130 0.00 0.00 0.00 3.60
27 28 3.214328 AGCATTTTCTCTGTTGTCCGTT 58.786 40.909 0.00 0.00 0.00 4.44
28 29 2.808543 GAGCATTTTCTCTGTTGTCCGT 59.191 45.455 0.00 0.00 0.00 4.69
29 30 2.159787 CGAGCATTTTCTCTGTTGTCCG 60.160 50.000 0.00 0.00 0.00 4.79
30 31 2.160417 CCGAGCATTTTCTCTGTTGTCC 59.840 50.000 0.00 0.00 0.00 4.02
31 32 3.067106 TCCGAGCATTTTCTCTGTTGTC 58.933 45.455 0.00 0.00 0.00 3.18
32 33 3.126001 TCCGAGCATTTTCTCTGTTGT 57.874 42.857 0.00 0.00 0.00 3.32
33 34 3.730061 GCATCCGAGCATTTTCTCTGTTG 60.730 47.826 0.00 0.00 0.00 3.33
34 35 2.421424 GCATCCGAGCATTTTCTCTGTT 59.579 45.455 0.00 0.00 0.00 3.16
35 36 2.012673 GCATCCGAGCATTTTCTCTGT 58.987 47.619 0.00 0.00 0.00 3.41
36 37 2.011947 TGCATCCGAGCATTTTCTCTG 58.988 47.619 0.00 0.00 40.11 3.35
37 38 2.408271 TGCATCCGAGCATTTTCTCT 57.592 45.000 0.00 0.00 40.11 3.10
46 47 1.063174 GTTTGTCTCATGCATCCGAGC 59.937 52.381 8.78 5.66 0.00 5.03
47 48 2.094894 GTGTTTGTCTCATGCATCCGAG 59.905 50.000 7.55 7.55 0.00 4.63
48 49 2.076100 GTGTTTGTCTCATGCATCCGA 58.924 47.619 0.00 0.00 0.00 4.55
49 50 1.201954 CGTGTTTGTCTCATGCATCCG 60.202 52.381 0.00 0.00 0.00 4.18
50 51 1.806542 ACGTGTTTGTCTCATGCATCC 59.193 47.619 0.00 0.00 0.00 3.51
51 52 4.093408 ACATACGTGTTTGTCTCATGCATC 59.907 41.667 0.00 0.00 34.01 3.91
52 53 4.002982 ACATACGTGTTTGTCTCATGCAT 58.997 39.130 0.00 0.00 34.01 3.96
53 54 3.398406 ACATACGTGTTTGTCTCATGCA 58.602 40.909 0.00 0.00 34.01 3.96
54 55 5.524511 TTACATACGTGTTTGTCTCATGC 57.475 39.130 0.00 0.00 39.77 4.06
55 56 6.465781 GCATTTACATACGTGTTTGTCTCATG 59.534 38.462 0.00 4.51 39.77 3.07
56 57 6.542852 GCATTTACATACGTGTTTGTCTCAT 58.457 36.000 0.00 0.00 39.77 2.90
57 58 5.388994 CGCATTTACATACGTGTTTGTCTCA 60.389 40.000 0.00 0.00 39.77 3.27
58 59 5.013236 CGCATTTACATACGTGTTTGTCTC 58.987 41.667 0.00 0.00 39.77 3.36
59 60 4.687018 TCGCATTTACATACGTGTTTGTCT 59.313 37.500 0.00 0.00 39.77 3.41
60 61 4.948588 TCGCATTTACATACGTGTTTGTC 58.051 39.130 0.00 0.00 39.77 3.18
61 62 4.994220 TCGCATTTACATACGTGTTTGT 57.006 36.364 0.00 1.83 39.77 2.83
62 63 5.320723 ACATCGCATTTACATACGTGTTTG 58.679 37.500 0.00 0.00 39.77 2.93
63 64 5.539582 ACATCGCATTTACATACGTGTTT 57.460 34.783 0.00 0.00 39.77 2.83
64 65 5.577554 TGTACATCGCATTTACATACGTGTT 59.422 36.000 0.00 0.00 39.77 3.32
65 66 5.103687 TGTACATCGCATTTACATACGTGT 58.896 37.500 0.00 0.00 42.39 4.49
66 67 5.629348 TGTACATCGCATTTACATACGTG 57.371 39.130 0.00 0.00 0.00 4.49
67 68 5.980715 TCATGTACATCGCATTTACATACGT 59.019 36.000 5.07 0.00 35.20 3.57
68 69 6.446659 TCATGTACATCGCATTTACATACG 57.553 37.500 5.07 0.00 35.20 3.06
69 70 7.952101 GTCATCATGTACATCGCATTTACATAC 59.048 37.037 5.07 1.85 35.20 2.39
70 71 7.655328 TGTCATCATGTACATCGCATTTACATA 59.345 33.333 5.07 1.06 35.20 2.29
71 72 6.482973 TGTCATCATGTACATCGCATTTACAT 59.517 34.615 5.07 3.55 36.99 2.29
72 73 5.814705 TGTCATCATGTACATCGCATTTACA 59.185 36.000 5.07 2.04 0.00 2.41
73 74 6.285790 TGTCATCATGTACATCGCATTTAC 57.714 37.500 5.07 0.00 0.00 2.01
74 75 6.890558 CATGTCATCATGTACATCGCATTTA 58.109 36.000 5.07 0.00 44.37 1.40
75 76 5.754778 CATGTCATCATGTACATCGCATTT 58.245 37.500 5.07 0.00 44.37 2.32
76 77 5.352643 CATGTCATCATGTACATCGCATT 57.647 39.130 5.07 0.00 44.37 3.56
85 86 9.238368 ATGCATTTCATATCATGTCATCATGTA 57.762 29.630 0.00 2.11 41.56 2.29
86 87 8.028938 CATGCATTTCATATCATGTCATCATGT 58.971 33.333 0.00 0.27 41.53 3.21
87 88 8.243426 TCATGCATTTCATATCATGTCATCATG 58.757 33.333 0.00 2.27 41.82 3.07
88 89 8.244113 GTCATGCATTTCATATCATGTCATCAT 58.756 33.333 0.00 0.00 37.95 2.45
89 90 7.229707 TGTCATGCATTTCATATCATGTCATCA 59.770 33.333 0.00 0.00 37.95 3.07
90 91 7.590279 TGTCATGCATTTCATATCATGTCATC 58.410 34.615 0.00 0.00 37.95 2.92
91 92 7.519032 TGTCATGCATTTCATATCATGTCAT 57.481 32.000 0.00 0.00 37.95 3.06
92 93 6.945938 TGTCATGCATTTCATATCATGTCA 57.054 33.333 0.00 0.00 37.95 3.58
93 94 7.796958 CATGTCATGCATTTCATATCATGTC 57.203 36.000 11.48 0.00 38.76 3.06
109 110 5.107259 CCTTGTCATTTGTTTGCATGTCATG 60.107 40.000 8.56 8.56 0.00 3.07
110 111 4.992319 CCTTGTCATTTGTTTGCATGTCAT 59.008 37.500 0.00 0.00 0.00 3.06
111 112 4.370049 CCTTGTCATTTGTTTGCATGTCA 58.630 39.130 0.00 0.00 0.00 3.58
112 113 3.184986 GCCTTGTCATTTGTTTGCATGTC 59.815 43.478 0.00 0.00 0.00 3.06
113 114 3.132925 GCCTTGTCATTTGTTTGCATGT 58.867 40.909 0.00 0.00 0.00 3.21
114 115 3.132160 TGCCTTGTCATTTGTTTGCATG 58.868 40.909 0.00 0.00 0.00 4.06
115 116 3.472283 TGCCTTGTCATTTGTTTGCAT 57.528 38.095 0.00 0.00 0.00 3.96
116 117 2.935201 GTTGCCTTGTCATTTGTTTGCA 59.065 40.909 0.00 0.00 0.00 4.08
117 118 2.935201 TGTTGCCTTGTCATTTGTTTGC 59.065 40.909 0.00 0.00 0.00 3.68
118 119 4.391216 TGTTGTTGCCTTGTCATTTGTTTG 59.609 37.500 0.00 0.00 0.00 2.93
119 120 4.573900 TGTTGTTGCCTTGTCATTTGTTT 58.426 34.783 0.00 0.00 0.00 2.83
120 121 4.183101 CTGTTGTTGCCTTGTCATTTGTT 58.817 39.130 0.00 0.00 0.00 2.83
121 122 3.784338 CTGTTGTTGCCTTGTCATTTGT 58.216 40.909 0.00 0.00 0.00 2.83
122 123 2.540931 GCTGTTGTTGCCTTGTCATTTG 59.459 45.455 0.00 0.00 0.00 2.32
123 124 2.799207 CGCTGTTGTTGCCTTGTCATTT 60.799 45.455 0.00 0.00 0.00 2.32
124 125 1.269206 CGCTGTTGTTGCCTTGTCATT 60.269 47.619 0.00 0.00 0.00 2.57
125 126 0.311790 CGCTGTTGTTGCCTTGTCAT 59.688 50.000 0.00 0.00 0.00 3.06
126 127 0.746204 TCGCTGTTGTTGCCTTGTCA 60.746 50.000 0.00 0.00 0.00 3.58
127 128 0.380378 TTCGCTGTTGTTGCCTTGTC 59.620 50.000 0.00 0.00 0.00 3.18
128 129 1.032014 ATTCGCTGTTGTTGCCTTGT 58.968 45.000 0.00 0.00 0.00 3.16
129 130 2.987413 TATTCGCTGTTGTTGCCTTG 57.013 45.000 0.00 0.00 0.00 3.61
130 131 4.236935 CAATTATTCGCTGTTGTTGCCTT 58.763 39.130 0.00 0.00 0.00 4.35
131 132 3.367292 CCAATTATTCGCTGTTGTTGCCT 60.367 43.478 0.00 0.00 0.00 4.75
132 133 2.923020 CCAATTATTCGCTGTTGTTGCC 59.077 45.455 0.00 0.00 0.00 4.52
133 134 3.832276 TCCAATTATTCGCTGTTGTTGC 58.168 40.909 0.00 0.00 0.00 4.17
134 135 5.569059 GTCTTCCAATTATTCGCTGTTGTTG 59.431 40.000 0.00 0.00 0.00 3.33
135 136 5.240623 TGTCTTCCAATTATTCGCTGTTGTT 59.759 36.000 0.00 0.00 0.00 2.83
136 137 4.759693 TGTCTTCCAATTATTCGCTGTTGT 59.240 37.500 0.00 0.00 0.00 3.32
137 138 5.088739 GTGTCTTCCAATTATTCGCTGTTG 58.911 41.667 0.00 0.00 0.00 3.33
138 139 4.156008 GGTGTCTTCCAATTATTCGCTGTT 59.844 41.667 0.00 0.00 0.00 3.16
139 140 3.689649 GGTGTCTTCCAATTATTCGCTGT 59.310 43.478 0.00 0.00 0.00 4.40
140 141 3.941483 AGGTGTCTTCCAATTATTCGCTG 59.059 43.478 0.00 0.00 0.00 5.18
141 142 3.941483 CAGGTGTCTTCCAATTATTCGCT 59.059 43.478 0.00 0.00 0.00 4.93
142 143 3.938963 TCAGGTGTCTTCCAATTATTCGC 59.061 43.478 0.00 0.00 0.00 4.70
143 144 4.032900 CGTCAGGTGTCTTCCAATTATTCG 59.967 45.833 0.00 0.00 0.00 3.34
144 145 4.201822 GCGTCAGGTGTCTTCCAATTATTC 60.202 45.833 0.00 0.00 0.00 1.75
145 146 3.689649 GCGTCAGGTGTCTTCCAATTATT 59.310 43.478 0.00 0.00 0.00 1.40
146 147 3.270877 GCGTCAGGTGTCTTCCAATTAT 58.729 45.455 0.00 0.00 0.00 1.28
147 148 2.037902 TGCGTCAGGTGTCTTCCAATTA 59.962 45.455 0.00 0.00 0.00 1.40
148 149 1.202758 TGCGTCAGGTGTCTTCCAATT 60.203 47.619 0.00 0.00 0.00 2.32
149 150 0.396435 TGCGTCAGGTGTCTTCCAAT 59.604 50.000 0.00 0.00 0.00 3.16
150 151 0.179234 TTGCGTCAGGTGTCTTCCAA 59.821 50.000 0.00 0.00 0.00 3.53
151 152 0.531974 GTTGCGTCAGGTGTCTTCCA 60.532 55.000 0.00 0.00 0.00 3.53
152 153 1.557443 CGTTGCGTCAGGTGTCTTCC 61.557 60.000 0.00 0.00 0.00 3.46
153 154 1.557443 CCGTTGCGTCAGGTGTCTTC 61.557 60.000 0.00 0.00 0.00 2.87
154 155 1.594293 CCGTTGCGTCAGGTGTCTT 60.594 57.895 0.00 0.00 0.00 3.01
155 156 2.029073 CCGTTGCGTCAGGTGTCT 59.971 61.111 0.00 0.00 0.00 3.41
156 157 2.279918 ACCGTTGCGTCAGGTGTC 60.280 61.111 0.00 0.00 36.81 3.67
157 158 2.279918 GACCGTTGCGTCAGGTGT 60.280 61.111 0.00 0.00 38.57 4.16
158 159 2.022129 GAGACCGTTGCGTCAGGTG 61.022 63.158 0.00 0.00 38.57 4.00
159 160 2.338984 GAGACCGTTGCGTCAGGT 59.661 61.111 0.00 0.00 41.63 4.00
160 161 2.805353 CGAGACCGTTGCGTCAGG 60.805 66.667 0.00 0.00 35.07 3.86
161 162 2.805353 CCGAGACCGTTGCGTCAG 60.805 66.667 0.00 0.00 35.07 3.51
162 163 4.351938 CCCGAGACCGTTGCGTCA 62.352 66.667 0.00 0.00 35.07 4.35
163 164 4.047059 TCCCGAGACCGTTGCGTC 62.047 66.667 0.00 0.00 0.00 5.19
164 165 4.353437 GTCCCGAGACCGTTGCGT 62.353 66.667 0.00 0.00 37.00 5.24
166 167 2.476534 TAACGTCCCGAGACCGTTGC 62.477 60.000 14.15 0.00 40.12 4.17
167 168 0.730494 GTAACGTCCCGAGACCGTTG 60.730 60.000 14.15 0.00 40.12 4.10
168 169 1.172180 TGTAACGTCCCGAGACCGTT 61.172 55.000 10.78 10.78 40.12 4.44
169 170 1.600636 TGTAACGTCCCGAGACCGT 60.601 57.895 0.00 0.00 40.12 4.83
170 171 1.154150 GTGTAACGTCCCGAGACCG 60.154 63.158 0.00 0.00 40.12 4.79
171 172 1.213799 GGTGTAACGTCCCGAGACC 59.786 63.158 0.00 0.00 40.12 3.85
172 173 1.213799 GGGTGTAACGTCCCGAGAC 59.786 63.158 0.00 0.00 38.12 3.36
173 174 1.978617 GGGGTGTAACGTCCCGAGA 60.979 63.158 4.10 0.00 44.27 4.04
174 175 1.610554 ATGGGGTGTAACGTCCCGAG 61.611 60.000 4.10 0.00 40.80 4.63
175 176 1.606885 GATGGGGTGTAACGTCCCGA 61.607 60.000 4.10 0.70 40.80 5.14
176 177 1.153509 GATGGGGTGTAACGTCCCG 60.154 63.158 4.10 0.00 40.80 5.14
177 178 1.222661 GGATGGGGTGTAACGTCCC 59.777 63.158 1.32 1.32 38.64 4.46
178 179 1.222661 GGGATGGGGTGTAACGTCC 59.777 63.158 0.00 0.00 41.13 4.79
179 180 1.153509 CGGGATGGGGTGTAACGTC 60.154 63.158 0.00 0.00 38.12 4.34
180 181 2.662070 CCGGGATGGGGTGTAACGT 61.662 63.158 0.00 0.00 38.12 3.99
181 182 2.188469 CCGGGATGGGGTGTAACG 59.812 66.667 0.00 0.00 38.12 3.18
182 183 2.124445 GCCGGGATGGGGTGTAAC 60.124 66.667 2.18 0.00 38.63 2.50
183 184 1.917336 GAAGCCGGGATGGGGTGTAA 61.917 60.000 2.18 0.00 37.96 2.41
184 185 2.285818 AAGCCGGGATGGGGTGTA 60.286 61.111 2.18 0.00 37.96 2.90
185 186 3.728373 GAAGCCGGGATGGGGTGT 61.728 66.667 2.18 0.00 37.96 4.16
186 187 4.856801 CGAAGCCGGGATGGGGTG 62.857 72.222 2.18 0.00 37.96 4.61
188 189 3.638592 AAACGAAGCCGGGATGGGG 62.639 63.158 2.18 0.00 40.78 4.96
189 190 2.045340 AAACGAAGCCGGGATGGG 60.045 61.111 2.18 0.00 40.78 4.00
190 191 1.674322 ACAAACGAAGCCGGGATGG 60.674 57.895 2.18 0.00 40.78 3.51
191 192 1.234615 ACACAAACGAAGCCGGGATG 61.235 55.000 2.18 0.00 40.78 3.51
192 193 0.322322 TACACAAACGAAGCCGGGAT 59.678 50.000 2.18 0.00 40.78 3.85
193 194 0.320073 CTACACAAACGAAGCCGGGA 60.320 55.000 2.18 0.00 40.78 5.14
194 195 0.320073 TCTACACAAACGAAGCCGGG 60.320 55.000 2.18 0.00 40.78 5.73
195 196 1.659098 GATCTACACAAACGAAGCCGG 59.341 52.381 0.00 0.00 40.78 6.13
196 197 1.659098 GGATCTACACAAACGAAGCCG 59.341 52.381 0.00 0.00 42.50 5.52
197 198 2.973945 AGGATCTACACAAACGAAGCC 58.026 47.619 0.00 0.00 0.00 4.35
198 199 5.446073 GCTAAAGGATCTACACAAACGAAGC 60.446 44.000 0.00 0.00 0.00 3.86
199 200 5.869888 AGCTAAAGGATCTACACAAACGAAG 59.130 40.000 0.00 0.00 0.00 3.79
200 201 5.790593 AGCTAAAGGATCTACACAAACGAA 58.209 37.500 0.00 0.00 0.00 3.85
201 202 5.401531 AGCTAAAGGATCTACACAAACGA 57.598 39.130 0.00 0.00 0.00 3.85
202 203 7.707035 AGATTAGCTAAAGGATCTACACAAACG 59.293 37.037 10.85 0.00 0.00 3.60
203 204 8.950208 AGATTAGCTAAAGGATCTACACAAAC 57.050 34.615 10.85 0.00 0.00 2.93
204 205 8.758829 TGAGATTAGCTAAAGGATCTACACAAA 58.241 33.333 10.85 0.00 0.00 2.83
205 206 8.306313 TGAGATTAGCTAAAGGATCTACACAA 57.694 34.615 10.85 0.00 0.00 3.33
206 207 7.898014 TGAGATTAGCTAAAGGATCTACACA 57.102 36.000 10.85 1.08 0.00 3.72
207 208 9.771534 AATTGAGATTAGCTAAAGGATCTACAC 57.228 33.333 10.85 0.00 0.00 2.90
215 216 9.837525 GCATCATTAATTGAGATTAGCTAAAGG 57.162 33.333 10.85 0.00 37.89 3.11
218 219 9.341078 TGTGCATCATTAATTGAGATTAGCTAA 57.659 29.630 8.99 8.99 37.89 3.09
219 220 8.907222 TGTGCATCATTAATTGAGATTAGCTA 57.093 30.769 0.00 0.00 37.89 3.32
220 221 7.812690 TGTGCATCATTAATTGAGATTAGCT 57.187 32.000 0.00 0.00 37.89 3.32
221 222 8.347771 TCTTGTGCATCATTAATTGAGATTAGC 58.652 33.333 0.00 0.00 37.89 3.09
224 225 9.932207 TTTTCTTGTGCATCATTAATTGAGATT 57.068 25.926 0.00 0.00 37.89 2.40
225 226 9.932207 TTTTTCTTGTGCATCATTAATTGAGAT 57.068 25.926 0.00 0.00 37.89 2.75
266 267 9.849166 ACAAAGAAAAGTTTCAGTTCGATTAAA 57.151 25.926 6.56 0.00 39.61 1.52
267 268 9.498307 GACAAAGAAAAGTTTCAGTTCGATTAA 57.502 29.630 6.56 0.00 39.61 1.40
268 269 8.126700 GGACAAAGAAAAGTTTCAGTTCGATTA 58.873 33.333 6.56 0.00 39.61 1.75
269 270 6.972901 GGACAAAGAAAAGTTTCAGTTCGATT 59.027 34.615 6.56 0.00 39.61 3.34
270 271 6.318900 AGGACAAAGAAAAGTTTCAGTTCGAT 59.681 34.615 6.56 0.00 39.61 3.59
271 272 5.646360 AGGACAAAGAAAAGTTTCAGTTCGA 59.354 36.000 6.56 0.00 39.61 3.71
272 273 5.880341 AGGACAAAGAAAAGTTTCAGTTCG 58.120 37.500 6.56 0.00 39.61 3.95
273 274 7.986562 AGTAGGACAAAGAAAAGTTTCAGTTC 58.013 34.615 6.56 1.56 39.61 3.01
274 275 7.610305 TGAGTAGGACAAAGAAAAGTTTCAGTT 59.390 33.333 6.56 0.00 39.61 3.16
275 276 7.110155 TGAGTAGGACAAAGAAAAGTTTCAGT 58.890 34.615 6.56 2.22 39.61 3.41
276 277 7.553881 TGAGTAGGACAAAGAAAAGTTTCAG 57.446 36.000 6.56 0.00 39.61 3.02
277 278 8.519799 AATGAGTAGGACAAAGAAAAGTTTCA 57.480 30.769 6.56 0.00 39.61 2.69
278 279 8.076781 GGAATGAGTAGGACAAAGAAAAGTTTC 58.923 37.037 0.00 0.00 37.45 2.78
279 280 7.014326 GGGAATGAGTAGGACAAAGAAAAGTTT 59.986 37.037 0.00 0.00 0.00 2.66
280 281 6.490381 GGGAATGAGTAGGACAAAGAAAAGTT 59.510 38.462 0.00 0.00 0.00 2.66
281 282 6.004574 GGGAATGAGTAGGACAAAGAAAAGT 58.995 40.000 0.00 0.00 0.00 2.66
282 283 6.241645 AGGGAATGAGTAGGACAAAGAAAAG 58.758 40.000 0.00 0.00 0.00 2.27
283 284 6.200878 AGGGAATGAGTAGGACAAAGAAAA 57.799 37.500 0.00 0.00 0.00 2.29
284 285 5.843019 AGGGAATGAGTAGGACAAAGAAA 57.157 39.130 0.00 0.00 0.00 2.52
285 286 5.843019 AAGGGAATGAGTAGGACAAAGAA 57.157 39.130 0.00 0.00 0.00 2.52
286 287 6.945636 TTAAGGGAATGAGTAGGACAAAGA 57.054 37.500 0.00 0.00 0.00 2.52
287 288 7.447238 TGTTTTAAGGGAATGAGTAGGACAAAG 59.553 37.037 0.00 0.00 0.00 2.77
288 289 7.291566 TGTTTTAAGGGAATGAGTAGGACAAA 58.708 34.615 0.00 0.00 0.00 2.83
289 290 6.843752 TGTTTTAAGGGAATGAGTAGGACAA 58.156 36.000 0.00 0.00 0.00 3.18
290 291 6.442541 TGTTTTAAGGGAATGAGTAGGACA 57.557 37.500 0.00 0.00 0.00 4.02
291 292 7.754851 TTTGTTTTAAGGGAATGAGTAGGAC 57.245 36.000 0.00 0.00 0.00 3.85
292 293 8.770010 TTTTTGTTTTAAGGGAATGAGTAGGA 57.230 30.769 0.00 0.00 0.00 2.94
326 327 9.767684 CGTTACATGATGCTTTTCATAAGTTAA 57.232 29.630 0.00 0.00 34.59 2.01
327 328 8.941977 ACGTTACATGATGCTTTTCATAAGTTA 58.058 29.630 0.00 0.00 34.59 2.24
328 329 7.816640 ACGTTACATGATGCTTTTCATAAGTT 58.183 30.769 0.00 0.00 34.59 2.66
329 330 7.377766 ACGTTACATGATGCTTTTCATAAGT 57.622 32.000 0.00 0.00 34.59 2.24
330 331 7.218773 CCAACGTTACATGATGCTTTTCATAAG 59.781 37.037 0.00 0.00 34.59 1.73
331 332 7.026562 CCAACGTTACATGATGCTTTTCATAA 58.973 34.615 0.00 0.00 34.59 1.90
332 333 6.372937 TCCAACGTTACATGATGCTTTTCATA 59.627 34.615 0.00 0.00 34.59 2.15
333 334 5.182950 TCCAACGTTACATGATGCTTTTCAT 59.817 36.000 0.00 0.00 36.79 2.57
334 335 4.517075 TCCAACGTTACATGATGCTTTTCA 59.483 37.500 0.00 0.00 0.00 2.69
335 336 4.851558 GTCCAACGTTACATGATGCTTTTC 59.148 41.667 0.00 0.00 0.00 2.29
336 337 4.612712 CGTCCAACGTTACATGATGCTTTT 60.613 41.667 0.00 0.00 36.74 2.27
337 338 3.120338 CGTCCAACGTTACATGATGCTTT 60.120 43.478 0.00 0.00 36.74 3.51
338 339 2.415168 CGTCCAACGTTACATGATGCTT 59.585 45.455 0.00 0.00 36.74 3.91
339 340 1.999735 CGTCCAACGTTACATGATGCT 59.000 47.619 0.00 0.00 36.74 3.79
340 341 1.062002 CCGTCCAACGTTACATGATGC 59.938 52.381 0.00 0.00 40.58 3.91
341 342 2.612604 TCCGTCCAACGTTACATGATG 58.387 47.619 0.00 1.26 40.58 3.07
342 343 3.056393 TCTTCCGTCCAACGTTACATGAT 60.056 43.478 0.00 0.00 40.58 2.45
343 344 2.296752 TCTTCCGTCCAACGTTACATGA 59.703 45.455 0.00 0.00 40.58 3.07
344 345 2.679450 TCTTCCGTCCAACGTTACATG 58.321 47.619 0.00 0.00 40.58 3.21
345 346 3.389925 TTCTTCCGTCCAACGTTACAT 57.610 42.857 0.00 0.00 40.58 2.29
346 347 2.886862 TTCTTCCGTCCAACGTTACA 57.113 45.000 0.00 0.00 40.58 2.41
347 348 3.319755 TGATTCTTCCGTCCAACGTTAC 58.680 45.455 0.00 0.00 40.58 2.50
348 349 3.256383 TCTGATTCTTCCGTCCAACGTTA 59.744 43.478 0.00 0.00 40.58 3.18
349 350 2.036733 TCTGATTCTTCCGTCCAACGTT 59.963 45.455 0.00 0.00 40.58 3.99
350 351 1.616865 TCTGATTCTTCCGTCCAACGT 59.383 47.619 0.00 0.00 40.58 3.99
351 352 2.363788 TCTGATTCTTCCGTCCAACG 57.636 50.000 0.00 0.00 42.11 4.10
352 353 6.927294 ATTAATCTGATTCTTCCGTCCAAC 57.073 37.500 6.10 0.00 0.00 3.77
354 355 9.929180 CTATAATTAATCTGATTCTTCCGTCCA 57.071 33.333 6.10 0.00 0.00 4.02
355 356 9.930693 ACTATAATTAATCTGATTCTTCCGTCC 57.069 33.333 6.10 0.00 0.00 4.79
369 370 9.845305 CGGAAAAGAACGACACTATAATTAATC 57.155 33.333 0.00 0.00 0.00 1.75
370 371 8.333186 GCGGAAAAGAACGACACTATAATTAAT 58.667 33.333 0.00 0.00 0.00 1.40
371 372 7.546667 AGCGGAAAAGAACGACACTATAATTAA 59.453 33.333 0.00 0.00 0.00 1.40
372 373 7.037438 AGCGGAAAAGAACGACACTATAATTA 58.963 34.615 0.00 0.00 0.00 1.40
373 374 5.873164 AGCGGAAAAGAACGACACTATAATT 59.127 36.000 0.00 0.00 0.00 1.40
374 375 5.416947 AGCGGAAAAGAACGACACTATAAT 58.583 37.500 0.00 0.00 0.00 1.28
375 376 4.813027 AGCGGAAAAGAACGACACTATAA 58.187 39.130 0.00 0.00 0.00 0.98
376 377 4.445452 AGCGGAAAAGAACGACACTATA 57.555 40.909 0.00 0.00 0.00 1.31
377 378 3.314541 AGCGGAAAAGAACGACACTAT 57.685 42.857 0.00 0.00 0.00 2.12
378 379 2.806608 AGCGGAAAAGAACGACACTA 57.193 45.000 0.00 0.00 0.00 2.74
379 380 1.949465 AAGCGGAAAAGAACGACACT 58.051 45.000 0.00 0.00 0.00 3.55
380 381 2.750301 AAAGCGGAAAAGAACGACAC 57.250 45.000 0.00 0.00 0.00 3.67
381 382 2.678836 TCAAAAGCGGAAAAGAACGACA 59.321 40.909 0.00 0.00 0.00 4.35
382 383 3.328237 TCAAAAGCGGAAAAGAACGAC 57.672 42.857 0.00 0.00 0.00 4.34
383 384 4.561735 AATCAAAAGCGGAAAAGAACGA 57.438 36.364 0.00 0.00 0.00 3.85
384 385 5.225129 CGATAATCAAAAGCGGAAAAGAACG 59.775 40.000 0.00 0.00 0.00 3.95
385 386 5.003496 GCGATAATCAAAAGCGGAAAAGAAC 59.997 40.000 0.00 0.00 0.00 3.01
386 387 5.092781 GCGATAATCAAAAGCGGAAAAGAA 58.907 37.500 0.00 0.00 0.00 2.52
387 388 4.155099 TGCGATAATCAAAAGCGGAAAAGA 59.845 37.500 0.00 0.00 0.00 2.52
388 389 4.411327 TGCGATAATCAAAAGCGGAAAAG 58.589 39.130 0.00 0.00 0.00 2.27
389 390 4.427096 TGCGATAATCAAAAGCGGAAAA 57.573 36.364 0.00 0.00 0.00 2.29
390 391 4.142491 ACATGCGATAATCAAAAGCGGAAA 60.142 37.500 0.00 0.00 0.00 3.13
391 392 3.376859 ACATGCGATAATCAAAAGCGGAA 59.623 39.130 0.00 0.00 0.00 4.30
392 393 2.942376 ACATGCGATAATCAAAAGCGGA 59.058 40.909 0.00 0.00 0.00 5.54
393 394 3.038017 CACATGCGATAATCAAAAGCGG 58.962 45.455 0.00 0.00 0.00 5.52
394 395 3.683989 ACACATGCGATAATCAAAAGCG 58.316 40.909 0.00 0.00 0.00 4.68
395 396 5.678483 CACTACACATGCGATAATCAAAAGC 59.322 40.000 0.00 0.00 0.00 3.51
396 397 6.684131 CACACTACACATGCGATAATCAAAAG 59.316 38.462 0.00 0.00 0.00 2.27
397 398 6.148645 ACACACTACACATGCGATAATCAAAA 59.851 34.615 0.00 0.00 0.00 2.44
398 399 5.641636 ACACACTACACATGCGATAATCAAA 59.358 36.000 0.00 0.00 0.00 2.69
399 400 5.175127 ACACACTACACATGCGATAATCAA 58.825 37.500 0.00 0.00 0.00 2.57
400 401 4.754322 ACACACTACACATGCGATAATCA 58.246 39.130 0.00 0.00 0.00 2.57
401 402 5.718649 AACACACTACACATGCGATAATC 57.281 39.130 0.00 0.00 0.00 1.75
402 403 7.603963 TTAAACACACTACACATGCGATAAT 57.396 32.000 0.00 0.00 0.00 1.28
403 404 7.422878 TTTAAACACACTACACATGCGATAA 57.577 32.000 0.00 0.00 0.00 1.75
404 405 7.603963 ATTTAAACACACTACACATGCGATA 57.396 32.000 0.00 0.00 0.00 2.92
405 406 5.933187 TTTAAACACACTACACATGCGAT 57.067 34.783 0.00 0.00 0.00 4.58
406 407 5.933187 ATTTAAACACACTACACATGCGA 57.067 34.783 0.00 0.00 0.00 5.10
407 408 6.019152 GGTATTTAAACACACTACACATGCG 58.981 40.000 0.00 0.00 0.00 4.73
408 409 7.094975 TGAGGTATTTAAACACACTACACATGC 60.095 37.037 0.00 0.00 0.00 4.06
409 410 8.317891 TGAGGTATTTAAACACACTACACATG 57.682 34.615 0.00 0.00 0.00 3.21
410 411 8.911918 TTGAGGTATTTAAACACACTACACAT 57.088 30.769 0.00 0.00 0.00 3.21
411 412 8.205512 TCTTGAGGTATTTAAACACACTACACA 58.794 33.333 0.00 0.00 0.00 3.72
412 413 8.597662 TCTTGAGGTATTTAAACACACTACAC 57.402 34.615 0.00 0.00 0.00 2.90
413 414 7.386848 GCTCTTGAGGTATTTAAACACACTACA 59.613 37.037 0.00 0.00 0.00 2.74
414 415 7.148457 GGCTCTTGAGGTATTTAAACACACTAC 60.148 40.741 0.00 0.00 0.00 2.73
415 416 6.877322 GGCTCTTGAGGTATTTAAACACACTA 59.123 38.462 0.00 0.00 0.00 2.74
416 417 5.705905 GGCTCTTGAGGTATTTAAACACACT 59.294 40.000 0.00 0.00 0.00 3.55
417 418 5.705905 AGGCTCTTGAGGTATTTAAACACAC 59.294 40.000 0.00 0.00 0.00 3.82
418 419 5.876357 AGGCTCTTGAGGTATTTAAACACA 58.124 37.500 0.00 0.00 0.00 3.72
419 420 6.819397 AAGGCTCTTGAGGTATTTAAACAC 57.181 37.500 0.00 0.00 0.00 3.32
420 421 8.927675 TTTAAGGCTCTTGAGGTATTTAAACA 57.072 30.769 0.00 0.00 0.00 2.83
425 426 9.920946 TGATATTTTAAGGCTCTTGAGGTATTT 57.079 29.630 0.00 0.00 0.00 1.40
428 429 9.920946 AAATGATATTTTAAGGCTCTTGAGGTA 57.079 29.630 0.00 0.00 0.00 3.08
429 430 8.829373 AAATGATATTTTAAGGCTCTTGAGGT 57.171 30.769 0.00 0.00 0.00 3.85
435 436 9.082313 CCCACATAAATGATATTTTAAGGCTCT 57.918 33.333 0.00 0.00 0.00 4.09
436 437 8.860088 ACCCACATAAATGATATTTTAAGGCTC 58.140 33.333 0.00 0.00 0.00 4.70
437 438 8.782137 ACCCACATAAATGATATTTTAAGGCT 57.218 30.769 0.00 0.00 0.00 4.58
438 439 9.476202 GAACCCACATAAATGATATTTTAAGGC 57.524 33.333 0.00 0.00 0.00 4.35
439 440 9.981114 GGAACCCACATAAATGATATTTTAAGG 57.019 33.333 0.00 0.00 0.00 2.69
442 443 9.362151 GGAGGAACCCACATAAATGATATTTTA 57.638 33.333 0.00 0.00 0.00 1.52
443 444 8.067488 AGGAGGAACCCACATAAATGATATTTT 58.933 33.333 0.00 0.00 40.05 1.82
444 445 7.595488 AGGAGGAACCCACATAAATGATATTT 58.405 34.615 0.00 0.00 40.05 1.40
445 446 7.166758 AGGAGGAACCCACATAAATGATATT 57.833 36.000 0.00 0.00 40.05 1.28
446 447 6.786843 AGGAGGAACCCACATAAATGATAT 57.213 37.500 0.00 0.00 40.05 1.63
447 448 7.699709 TTAGGAGGAACCCACATAAATGATA 57.300 36.000 0.00 0.00 40.05 2.15
448 449 6.590656 TTAGGAGGAACCCACATAAATGAT 57.409 37.500 0.00 0.00 40.05 2.45
449 450 6.395780 TTTAGGAGGAACCCACATAAATGA 57.604 37.500 0.00 0.00 40.05 2.57
450 451 7.660030 ATTTTAGGAGGAACCCACATAAATG 57.340 36.000 0.00 0.00 40.05 2.32
451 452 9.588096 GATATTTTAGGAGGAACCCACATAAAT 57.412 33.333 0.00 0.00 40.05 1.40
452 453 8.787818 AGATATTTTAGGAGGAACCCACATAAA 58.212 33.333 0.00 0.00 40.05 1.40
453 454 8.344939 AGATATTTTAGGAGGAACCCACATAA 57.655 34.615 0.00 0.00 40.05 1.90
454 455 7.570982 TGAGATATTTTAGGAGGAACCCACATA 59.429 37.037 0.00 0.00 40.05 2.29
455 456 6.389869 TGAGATATTTTAGGAGGAACCCACAT 59.610 38.462 0.00 0.00 40.05 3.21
456 457 5.729229 TGAGATATTTTAGGAGGAACCCACA 59.271 40.000 0.00 0.00 40.05 4.17
457 458 6.248569 TGAGATATTTTAGGAGGAACCCAC 57.751 41.667 0.00 0.00 40.05 4.61
458 459 7.465900 AATGAGATATTTTAGGAGGAACCCA 57.534 36.000 0.00 0.00 40.05 4.51
459 460 7.448777 GGAAATGAGATATTTTAGGAGGAACCC 59.551 40.741 0.00 0.00 40.05 4.11
460 461 8.221251 AGGAAATGAGATATTTTAGGAGGAACC 58.779 37.037 0.00 0.00 39.35 3.62
461 462 9.634021 AAGGAAATGAGATATTTTAGGAGGAAC 57.366 33.333 0.00 0.00 0.00 3.62
474 475 9.527157 TCAAAATGGTGTAAAGGAAATGAGATA 57.473 29.630 0.00 0.00 0.00 1.98
475 476 8.306761 GTCAAAATGGTGTAAAGGAAATGAGAT 58.693 33.333 0.00 0.00 0.00 2.75
476 477 7.521423 CGTCAAAATGGTGTAAAGGAAATGAGA 60.521 37.037 0.00 0.00 0.00 3.27
477 478 6.582295 CGTCAAAATGGTGTAAAGGAAATGAG 59.418 38.462 0.00 0.00 0.00 2.90
478 479 6.039941 ACGTCAAAATGGTGTAAAGGAAATGA 59.960 34.615 0.00 0.00 0.00 2.57
479 480 6.212955 ACGTCAAAATGGTGTAAAGGAAATG 58.787 36.000 0.00 0.00 0.00 2.32
480 481 6.399639 ACGTCAAAATGGTGTAAAGGAAAT 57.600 33.333 0.00 0.00 0.00 2.17
481 482 5.838531 ACGTCAAAATGGTGTAAAGGAAA 57.161 34.783 0.00 0.00 0.00 3.13
482 483 5.591067 AGAACGTCAAAATGGTGTAAAGGAA 59.409 36.000 0.00 0.00 0.00 3.36
483 484 5.008217 CAGAACGTCAAAATGGTGTAAAGGA 59.992 40.000 0.00 0.00 0.00 3.36
484 485 5.212194 CAGAACGTCAAAATGGTGTAAAGG 58.788 41.667 0.00 0.00 0.00 3.11
485 486 5.816919 ACAGAACGTCAAAATGGTGTAAAG 58.183 37.500 0.00 0.00 0.00 1.85
486 487 5.812652 GACAGAACGTCAAAATGGTGTAAA 58.187 37.500 0.00 0.00 44.69 2.01
487 488 5.412526 GACAGAACGTCAAAATGGTGTAA 57.587 39.130 0.00 0.00 44.69 2.41
489 490 3.963383 GACAGAACGTCAAAATGGTGT 57.037 42.857 0.00 0.00 44.69 4.16
499 500 3.252974 AGGATTGGATGACAGAACGTC 57.747 47.619 0.00 0.00 45.61 4.34
500 501 4.405680 TGATAGGATTGGATGACAGAACGT 59.594 41.667 0.00 0.00 0.00 3.99
501 502 4.948847 TGATAGGATTGGATGACAGAACG 58.051 43.478 0.00 0.00 0.00 3.95
502 503 5.988561 GTCTGATAGGATTGGATGACAGAAC 59.011 44.000 0.00 0.00 35.47 3.01
503 504 5.901853 AGTCTGATAGGATTGGATGACAGAA 59.098 40.000 0.00 0.00 35.47 3.02
504 505 5.462240 AGTCTGATAGGATTGGATGACAGA 58.538 41.667 0.00 0.00 0.00 3.41
505 506 5.804944 AGTCTGATAGGATTGGATGACAG 57.195 43.478 0.00 0.00 0.00 3.51
506 507 6.784473 ACATAGTCTGATAGGATTGGATGACA 59.216 38.462 0.00 0.00 0.00 3.58
507 508 7.039434 TGACATAGTCTGATAGGATTGGATGAC 60.039 40.741 0.00 0.00 33.15 3.06
508 509 7.012607 TGACATAGTCTGATAGGATTGGATGA 58.987 38.462 0.00 0.00 33.15 2.92
509 510 7.178097 TCTGACATAGTCTGATAGGATTGGATG 59.822 40.741 3.09 0.00 36.02 3.51
510 511 7.178274 GTCTGACATAGTCTGATAGGATTGGAT 59.822 40.741 2.24 0.00 41.19 3.41
511 512 6.491745 GTCTGACATAGTCTGATAGGATTGGA 59.508 42.308 2.24 0.00 41.19 3.53
512 513 6.569418 CGTCTGACATAGTCTGATAGGATTGG 60.569 46.154 8.73 0.00 41.19 3.16
513 514 6.016693 ACGTCTGACATAGTCTGATAGGATTG 60.017 42.308 8.73 0.00 41.19 2.67
514 515 6.016693 CACGTCTGACATAGTCTGATAGGATT 60.017 42.308 8.73 0.00 41.19 3.01
515 516 5.471797 CACGTCTGACATAGTCTGATAGGAT 59.528 44.000 8.73 0.00 41.19 3.24
516 517 4.816925 CACGTCTGACATAGTCTGATAGGA 59.183 45.833 8.73 0.00 41.19 2.94
517 518 4.023622 CCACGTCTGACATAGTCTGATAGG 60.024 50.000 8.73 8.28 41.19 2.57
518 519 4.023622 CCCACGTCTGACATAGTCTGATAG 60.024 50.000 8.73 9.32 41.19 2.08
519 520 3.883489 CCCACGTCTGACATAGTCTGATA 59.117 47.826 8.73 0.00 41.19 2.15
520 521 2.690497 CCCACGTCTGACATAGTCTGAT 59.310 50.000 8.73 0.00 41.19 2.90
521 522 2.092323 CCCACGTCTGACATAGTCTGA 58.908 52.381 8.73 3.09 37.99 3.27
522 523 1.819288 ACCCACGTCTGACATAGTCTG 59.181 52.381 8.73 0.00 33.15 3.51
523 524 2.093106 GACCCACGTCTGACATAGTCT 58.907 52.381 8.73 0.00 35.99 3.24
524 525 1.202154 CGACCCACGTCTGACATAGTC 60.202 57.143 8.73 7.69 36.82 2.59
525 526 0.809385 CGACCCACGTCTGACATAGT 59.191 55.000 8.73 0.00 36.82 2.12
526 527 1.092348 TCGACCCACGTCTGACATAG 58.908 55.000 8.73 0.00 43.13 2.23
527 528 1.404035 CATCGACCCACGTCTGACATA 59.596 52.381 8.73 0.00 43.13 2.29
528 529 0.173481 CATCGACCCACGTCTGACAT 59.827 55.000 8.73 0.00 43.13 3.06
529 530 1.584495 CATCGACCCACGTCTGACA 59.416 57.895 8.73 0.00 43.13 3.58
530 531 1.805945 GCATCGACCCACGTCTGAC 60.806 63.158 0.00 0.00 43.13 3.51
531 532 2.571757 GCATCGACCCACGTCTGA 59.428 61.111 0.00 0.00 43.13 3.27
532 533 2.880879 CGCATCGACCCACGTCTG 60.881 66.667 0.00 0.00 43.13 3.51
533 534 4.129737 CCGCATCGACCCACGTCT 62.130 66.667 0.00 0.00 43.13 4.18
536 537 4.221422 ATCCCGCATCGACCCACG 62.221 66.667 0.00 0.00 44.09 4.94
537 538 2.588877 CATCCCGCATCGACCCAC 60.589 66.667 0.00 0.00 0.00 4.61
538 539 3.860605 CCATCCCGCATCGACCCA 61.861 66.667 0.00 0.00 0.00 4.51
539 540 4.626081 CCCATCCCGCATCGACCC 62.626 72.222 0.00 0.00 0.00 4.46
543 544 3.252627 TATGGCCCATCCCGCATCG 62.253 63.158 0.00 0.00 0.00 3.84
544 545 1.377725 CTATGGCCCATCCCGCATC 60.378 63.158 0.00 0.00 0.00 3.91
545 546 1.426251 TTCTATGGCCCATCCCGCAT 61.426 55.000 0.00 0.00 0.00 4.73
546 547 1.640593 TTTCTATGGCCCATCCCGCA 61.641 55.000 0.00 0.00 0.00 5.69
547 548 0.467290 TTTTCTATGGCCCATCCCGC 60.467 55.000 0.00 0.00 0.00 6.13
548 549 2.065899 TTTTTCTATGGCCCATCCCG 57.934 50.000 0.00 0.00 0.00 5.14
566 567 4.872691 CAGAGATATCGTGAGTGCCTTTTT 59.127 41.667 0.00 0.00 0.00 1.94
567 568 4.081420 ACAGAGATATCGTGAGTGCCTTTT 60.081 41.667 13.32 0.00 0.00 2.27
568 569 3.449018 ACAGAGATATCGTGAGTGCCTTT 59.551 43.478 13.32 0.00 0.00 3.11
569 570 3.027412 ACAGAGATATCGTGAGTGCCTT 58.973 45.455 13.32 0.00 0.00 4.35
570 571 2.360483 CACAGAGATATCGTGAGTGCCT 59.640 50.000 13.32 0.00 32.23 4.75
571 572 2.544694 CCACAGAGATATCGTGAGTGCC 60.545 54.545 13.32 0.00 32.23 5.01
572 573 2.359214 TCCACAGAGATATCGTGAGTGC 59.641 50.000 13.32 0.00 32.23 4.40
578 579 1.683917 GTGCCTCCACAGAGATATCGT 59.316 52.381 0.00 0.00 43.39 3.73
580 581 2.961741 TGAGTGCCTCCACAGAGATATC 59.038 50.000 0.00 0.00 44.53 1.63
587 588 2.947652 CCAATTATGAGTGCCTCCACAG 59.052 50.000 0.00 0.00 44.53 3.66
589 590 3.004752 ACCAATTATGAGTGCCTCCAC 57.995 47.619 0.50 0.00 42.39 4.02
591 592 5.376625 TCAATACCAATTATGAGTGCCTCC 58.623 41.667 0.50 0.00 0.00 4.30
649 650 9.121658 AGTTTTCTTTATACTAGCTAATTGCCC 57.878 33.333 0.00 0.00 44.23 5.36
744 746 5.463392 ACACACTCAAAGTATGCGCTATATG 59.537 40.000 9.73 0.28 0.00 1.78
757 759 0.954452 GAGGCCCAACACACTCAAAG 59.046 55.000 0.00 0.00 0.00 2.77
786 788 7.322461 TGAAACGATCGTATTGACAACATTTTG 59.678 33.333 23.04 0.00 38.83 2.44
852 861 3.205338 TCGGTGAAATCAGCATACCATG 58.795 45.455 12.54 0.00 44.00 3.66
855 864 3.270877 AGTTCGGTGAAATCAGCATACC 58.729 45.455 12.54 0.00 44.00 2.73
916 925 4.788100 CCGATGATGTGAACGTTCAATTTC 59.212 41.667 31.20 24.96 39.21 2.17
920 929 2.734606 GACCGATGATGTGAACGTTCAA 59.265 45.455 31.20 20.94 39.21 2.69
989 998 3.649277 GAGGACACGACGCCATGCT 62.649 63.158 0.00 0.00 0.00 3.79
990 999 3.188786 GAGGACACGACGCCATGC 61.189 66.667 0.00 0.00 0.00 4.06
991 1000 2.507110 AAGGAGGACACGACGCCATG 62.507 60.000 0.00 0.00 0.00 3.66
993 1002 2.915659 AAGGAGGACACGACGCCA 60.916 61.111 0.00 0.00 0.00 5.69
994 1003 2.432628 CAAGGAGGACACGACGCC 60.433 66.667 0.00 0.00 0.00 5.68
1032 1041 0.886490 AAAGCCCTGAGAACACTGCG 60.886 55.000 0.00 0.00 0.00 5.18
1058 1067 5.181009 CAGTTCATGTAGATGGAAAGCAGA 58.819 41.667 0.00 0.00 0.00 4.26
1072 1081 2.910688 ACGGAAGTGACAGTTCATGT 57.089 45.000 21.63 16.56 46.97 3.21
1164 1173 0.667993 GAGAGAGATGGGAGCAGTCG 59.332 60.000 0.00 0.00 0.00 4.18
1174 1184 3.244700 GGGGAGAGAGAGAGAGAGAGATG 60.245 56.522 0.00 0.00 0.00 2.90
1204 1214 1.076777 CAATGGGGCGAAGTGGGAT 60.077 57.895 0.00 0.00 0.00 3.85
1221 1231 2.342279 CGCCGTCAAGAAGGTCCA 59.658 61.111 4.05 0.00 32.29 4.02
1336 1346 0.907486 ATGCAACAGAGGCTAGCTCA 59.093 50.000 15.72 0.94 0.00 4.26
1367 1377 2.227388 GACTGCAAATCCCAACTCAGTG 59.773 50.000 0.00 0.00 35.23 3.66
1391 1401 9.066892 ACAAGATTGAAGCAAGATTTACAGTTA 57.933 29.630 0.00 0.00 0.00 2.24
1429 1439 0.820226 ACGCTCATCTGCTAAGCTGA 59.180 50.000 0.00 0.00 40.47 4.26
1442 1452 7.386573 TGAGTTTTTAGACAATTATGACGCTCA 59.613 33.333 0.00 0.00 0.00 4.26
1489 1499 0.107263 TCTGTGCTGTCTTGGTTGCA 60.107 50.000 0.00 0.00 0.00 4.08
1491 1501 2.030540 CCAATCTGTGCTGTCTTGGTTG 60.031 50.000 0.00 0.00 33.29 3.77
1492 1502 2.233271 CCAATCTGTGCTGTCTTGGTT 58.767 47.619 0.00 0.00 33.29 3.67
1493 1503 1.901591 CCAATCTGTGCTGTCTTGGT 58.098 50.000 0.00 0.00 33.29 3.67
1494 1504 0.524862 GCCAATCTGTGCTGTCTTGG 59.475 55.000 0.00 0.00 39.47 3.61
1576 1588 0.455126 GCAAGGCGAGCTTAGTTTGC 60.455 55.000 9.97 9.97 34.86 3.68
1666 1678 2.362889 CCAGCAAGCCCCCGAAAT 60.363 61.111 0.00 0.00 0.00 2.17
1733 1745 2.223758 GGCATCTCGTACTACCTTGGTC 60.224 54.545 0.00 0.00 0.00 4.02
1744 1756 4.201679 CACCGGCGGCATCTCGTA 62.202 66.667 28.71 0.00 0.00 3.43
1757 1769 4.393155 TGGCTAGCACTGGCACCG 62.393 66.667 18.24 0.00 44.61 4.94
1768 1780 2.514128 CTGCTGCAGGCTGGCTAG 60.514 66.667 21.71 8.37 42.39 3.42
1769 1781 3.320879 GACTGCTGCAGGCTGGCTA 62.321 63.158 31.00 2.68 43.42 3.93
1770 1782 4.719106 GACTGCTGCAGGCTGGCT 62.719 66.667 31.00 11.13 43.42 4.75
1820 1832 0.232303 CGAACACTTTGCTGACGTCC 59.768 55.000 14.12 0.00 0.00 4.79
1932 1944 0.251832 TCGTCTCCTTCCTCCAAGCT 60.252 55.000 0.00 0.00 0.00 3.74
1940 1952 0.109039 GTCTGCTGTCGTCTCCTTCC 60.109 60.000 0.00 0.00 0.00 3.46
1988 2000 2.094417 CCGACGGAATTTCTTCTTCAGC 59.906 50.000 8.64 0.00 0.00 4.26
2043 2055 1.800315 CGAAGACCACGAACGCGAT 60.800 57.895 15.93 0.00 41.64 4.58
2068 2080 0.750911 CCTTGGAGCCAGCAGATTCC 60.751 60.000 0.00 0.00 0.00 3.01
2089 2101 1.065701 CCAAGGATACAGAGTCGGTCG 59.934 57.143 0.00 0.00 41.41 4.79
2091 2103 2.100989 GTCCAAGGATACAGAGTCGGT 58.899 52.381 0.54 0.54 41.41 4.69
2092 2104 2.379972 AGTCCAAGGATACAGAGTCGG 58.620 52.381 0.00 0.00 41.41 4.79
2093 2105 4.200874 AGTAGTCCAAGGATACAGAGTCG 58.799 47.826 0.00 0.00 41.41 4.18
2106 2118 1.281867 CAGGGCCATGAAGTAGTCCAA 59.718 52.381 13.35 0.00 0.00 3.53
2138 2150 3.065510 ACCAGTCATACGTCTGAATCTCG 59.934 47.826 5.07 0.00 34.02 4.04
2156 2168 1.531264 CGAATCACGTACTCGGACCAG 60.531 57.143 5.47 0.00 41.85 4.00
2420 2432 2.282887 GGCCACACCAAATCCGGT 60.283 61.111 0.00 0.00 41.07 5.28
2850 5078 4.046938 TGAATCTGAGCCGATACTTCAC 57.953 45.455 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.