Multiple sequence alignment - TraesCS1A01G095800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G095800 | chr1A | 100.000 | 4839 | 0 | 0 | 1 | 4839 | 91414928 | 91410090 | 0.000000e+00 | 8937.0 |
1 | TraesCS1A01G095800 | chr1D | 89.903 | 1951 | 98 | 40 | 1985 | 3863 | 96702613 | 96700690 | 0.000000e+00 | 2420.0 |
2 | TraesCS1A01G095800 | chr1D | 86.967 | 1243 | 102 | 33 | 724 | 1937 | 96704066 | 96702855 | 0.000000e+00 | 1343.0 |
3 | TraesCS1A01G095800 | chr1D | 86.252 | 531 | 62 | 7 | 204 | 732 | 96769240 | 96768719 | 2.530000e-157 | 566.0 |
4 | TraesCS1A01G095800 | chr1D | 90.583 | 223 | 18 | 1 | 3918 | 4137 | 96700695 | 96700473 | 4.740000e-75 | 292.0 |
5 | TraesCS1A01G095800 | chr1D | 90.104 | 192 | 15 | 4 | 1 | 188 | 96769696 | 96769505 | 3.740000e-61 | 246.0 |
6 | TraesCS1A01G095800 | chr1D | 84.483 | 174 | 24 | 3 | 4655 | 4827 | 96698546 | 96698375 | 8.330000e-38 | 169.0 |
7 | TraesCS1A01G095800 | chr1B | 86.847 | 2030 | 144 | 47 | 517 | 2522 | 156684700 | 156686630 | 0.000000e+00 | 2156.0 |
8 | TraesCS1A01G095800 | chr1B | 88.988 | 1680 | 102 | 31 | 2523 | 4134 | 156686987 | 156688651 | 0.000000e+00 | 2001.0 |
9 | TraesCS1A01G095800 | chr1B | 81.143 | 525 | 70 | 11 | 2 | 520 | 156682383 | 156682884 | 1.260000e-105 | 394.0 |
10 | TraesCS1A01G095800 | chr1B | 85.714 | 56 | 5 | 3 | 4672 | 4727 | 637482022 | 637481970 | 6.770000e-04 | 56.5 |
11 | TraesCS1A01G095800 | chr6A | 75.144 | 1565 | 298 | 68 | 1160 | 2697 | 587780850 | 587779350 | 0.000000e+00 | 651.0 |
12 | TraesCS1A01G095800 | chr6A | 89.691 | 97 | 9 | 1 | 2805 | 2901 | 587779220 | 587779125 | 6.580000e-24 | 122.0 |
13 | TraesCS1A01G095800 | chr6B | 78.846 | 572 | 72 | 33 | 2362 | 2906 | 664218879 | 664218330 | 1.670000e-89 | 340.0 |
14 | TraesCS1A01G095800 | chr5D | 77.402 | 562 | 76 | 33 | 2362 | 2902 | 439305780 | 439306311 | 2.200000e-73 | 287.0 |
15 | TraesCS1A01G095800 | chr7A | 99.167 | 120 | 1 | 0 | 4526 | 4645 | 206932114 | 206932233 | 2.930000e-52 | 217.0 |
16 | TraesCS1A01G095800 | chr7A | 99.167 | 120 | 1 | 0 | 4526 | 4645 | 350423615 | 350423734 | 2.930000e-52 | 217.0 |
17 | TraesCS1A01G095800 | chr4B | 99.167 | 120 | 1 | 0 | 4526 | 4645 | 538268167 | 538268286 | 2.930000e-52 | 217.0 |
18 | TraesCS1A01G095800 | chr4B | 99.160 | 119 | 1 | 0 | 4526 | 4644 | 49753775 | 49753893 | 1.050000e-51 | 215.0 |
19 | TraesCS1A01G095800 | chr4A | 99.167 | 120 | 1 | 0 | 4526 | 4645 | 580296394 | 580296513 | 2.930000e-52 | 217.0 |
20 | TraesCS1A01G095800 | chr3A | 99.167 | 120 | 1 | 0 | 4526 | 4645 | 583909433 | 583909552 | 2.930000e-52 | 217.0 |
21 | TraesCS1A01G095800 | chr2A | 99.167 | 120 | 1 | 0 | 4526 | 4645 | 456139592 | 456139711 | 2.930000e-52 | 217.0 |
22 | TraesCS1A01G095800 | chrUn | 98.333 | 120 | 2 | 0 | 4526 | 4645 | 48495509 | 48495390 | 1.360000e-50 | 211.0 |
23 | TraesCS1A01G095800 | chrUn | 98.333 | 120 | 2 | 0 | 4526 | 4645 | 75470704 | 75470823 | 1.360000e-50 | 211.0 |
24 | TraesCS1A01G095800 | chr6D | 90.816 | 98 | 8 | 1 | 2805 | 2902 | 438892779 | 438892683 | 3.930000e-26 | 130.0 |
25 | TraesCS1A01G095800 | chr7B | 100.000 | 30 | 0 | 0 | 4691 | 4720 | 91803532 | 91803503 | 6.770000e-04 | 56.5 |
26 | TraesCS1A01G095800 | chr5A | 96.970 | 33 | 1 | 0 | 4357 | 4389 | 632571749 | 632571781 | 6.770000e-04 | 56.5 |
27 | TraesCS1A01G095800 | chr5A | 100.000 | 28 | 0 | 0 | 4685 | 4712 | 131676229 | 131676256 | 9.000000e-03 | 52.8 |
28 | TraesCS1A01G095800 | chr2B | 96.774 | 31 | 1 | 0 | 4357 | 4387 | 654749166 | 654749196 | 9.000000e-03 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G095800 | chr1A | 91410090 | 91414928 | 4838 | True | 8937.0 | 8937 | 100.000000 | 1 | 4839 | 1 | chr1A.!!$R1 | 4838 |
1 | TraesCS1A01G095800 | chr1D | 96698375 | 96704066 | 5691 | True | 1056.0 | 2420 | 87.984000 | 724 | 4827 | 4 | chr1D.!!$R1 | 4103 |
2 | TraesCS1A01G095800 | chr1D | 96768719 | 96769696 | 977 | True | 406.0 | 566 | 88.178000 | 1 | 732 | 2 | chr1D.!!$R2 | 731 |
3 | TraesCS1A01G095800 | chr1B | 156682383 | 156688651 | 6268 | False | 1517.0 | 2156 | 85.659333 | 2 | 4134 | 3 | chr1B.!!$F1 | 4132 |
4 | TraesCS1A01G095800 | chr6A | 587779125 | 587780850 | 1725 | True | 386.5 | 651 | 82.417500 | 1160 | 2901 | 2 | chr6A.!!$R1 | 1741 |
5 | TraesCS1A01G095800 | chr6B | 664218330 | 664218879 | 549 | True | 340.0 | 340 | 78.846000 | 2362 | 2906 | 1 | chr6B.!!$R1 | 544 |
6 | TraesCS1A01G095800 | chr5D | 439305780 | 439306311 | 531 | False | 287.0 | 287 | 77.402000 | 2362 | 2902 | 1 | chr5D.!!$F1 | 540 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
821 | 2912 | 0.032515 | TCCTGGAGACTAATCCGGCA | 60.033 | 55.0 | 0.0 | 0.0 | 43.42 | 5.69 | F |
822 | 2913 | 0.105039 | CCTGGAGACTAATCCGGCAC | 59.895 | 60.0 | 0.0 | 0.0 | 43.42 | 5.01 | F |
1906 | 4059 | 0.107557 | CCCCGGTTAGTACGCCATTT | 60.108 | 55.0 | 0.0 | 0.0 | 0.00 | 2.32 | F |
2453 | 4830 | 0.625316 | TGATGAAGTGGGACATGGGG | 59.375 | 55.0 | 0.0 | 0.0 | 44.52 | 4.96 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1824 | 3977 | 0.396435 | TCACGCCTGAGGAAACATGT | 59.604 | 50.000 | 0.65 | 0.00 | 0.00 | 3.21 | R |
1949 | 4206 | 0.532640 | CCATGGAATCGATGTCGGCA | 60.533 | 55.000 | 5.56 | 0.00 | 40.29 | 5.69 | R |
3643 | 6537 | 1.128692 | GTGCAACACGAGGAGCATTAC | 59.871 | 52.381 | 4.99 | 0.00 | 39.43 | 1.89 | R |
4044 | 6945 | 1.627329 | TCCATCTTTGCTGAGCTCAGT | 59.373 | 47.619 | 37.25 | 19.15 | 45.45 | 3.41 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
39 | 41 | 9.289303 | CTCACGCAACTAAAATTAGCATAAAAT | 57.711 | 29.630 | 0.13 | 0.00 | 34.09 | 1.82 |
43 | 46 | 9.885743 | CGCAACTAAAATTAGCATAAAATGTTC | 57.114 | 29.630 | 0.13 | 0.00 | 34.09 | 3.18 |
73 | 76 | 2.500229 | TCAAATCCCAAACGTCCAGAC | 58.500 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
166 | 170 | 9.204570 | ACATCGTATGATAAGCCAACTAAATAC | 57.795 | 33.333 | 0.00 | 0.00 | 32.18 | 1.89 |
167 | 171 | 9.203421 | CATCGTATGATAAGCCAACTAAATACA | 57.797 | 33.333 | 0.00 | 0.00 | 32.18 | 2.29 |
253 | 508 | 9.730420 | GTACAATTGCTCGGTTAATAAATGAAT | 57.270 | 29.630 | 5.05 | 0.00 | 0.00 | 2.57 |
260 | 516 | 6.485648 | GCTCGGTTAATAAATGAATACCAGGT | 59.514 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
277 | 533 | 8.927675 | ATACCAGGTAAAAATTGTTACAGACA | 57.072 | 30.769 | 18.19 | 2.30 | 35.96 | 3.41 |
289 | 545 | 3.064682 | TGTTACAGACATGCACACACAAC | 59.935 | 43.478 | 0.00 | 0.00 | 32.00 | 3.32 |
290 | 546 | 1.024271 | ACAGACATGCACACACAACC | 58.976 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
304 | 560 | 0.327924 | ACAACCGCCATGAAGGATGA | 59.672 | 50.000 | 18.46 | 0.00 | 41.22 | 2.92 |
308 | 564 | 0.816825 | CCGCCATGAAGGATGACAGG | 60.817 | 60.000 | 0.00 | 0.00 | 41.22 | 4.00 |
314 | 570 | 3.054875 | CCATGAAGGATGACAGGTGAAGA | 60.055 | 47.826 | 0.00 | 0.00 | 41.22 | 2.87 |
315 | 571 | 3.685139 | TGAAGGATGACAGGTGAAGAC | 57.315 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
317 | 573 | 3.584406 | TGAAGGATGACAGGTGAAGACAT | 59.416 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
324 | 580 | 5.482163 | TGACAGGTGAAGACATAATGACA | 57.518 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
332 | 588 | 5.473504 | GTGAAGACATAATGACAAACCTGGT | 59.526 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
359 | 616 | 4.494350 | ACACAAGCATCACAACAGAATC | 57.506 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
372 | 629 | 5.856986 | CACAACAGAATCATGAGAAGCAAAG | 59.143 | 40.000 | 0.09 | 0.00 | 0.00 | 2.77 |
373 | 630 | 5.533903 | ACAACAGAATCATGAGAAGCAAAGT | 59.466 | 36.000 | 0.09 | 0.00 | 0.00 | 2.66 |
377 | 634 | 6.541641 | ACAGAATCATGAGAAGCAAAGTATCC | 59.458 | 38.462 | 0.09 | 0.00 | 0.00 | 2.59 |
389 | 646 | 3.487544 | GCAAAGTATCCGTTGAGATTGCC | 60.488 | 47.826 | 0.00 | 0.00 | 32.55 | 4.52 |
407 | 664 | 1.086067 | CCGCATGCTTCATCGTGACT | 61.086 | 55.000 | 17.13 | 0.00 | 0.00 | 3.41 |
415 | 672 | 5.339008 | TGCTTCATCGTGACTACCTATTT | 57.661 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
419 | 676 | 3.317149 | TCATCGTGACTACCTATTTCCCG | 59.683 | 47.826 | 0.00 | 0.00 | 0.00 | 5.14 |
431 | 688 | 3.749609 | CCTATTTCCCGAACAAACGACTT | 59.250 | 43.478 | 0.00 | 0.00 | 35.09 | 3.01 |
432 | 689 | 4.214758 | CCTATTTCCCGAACAAACGACTTT | 59.785 | 41.667 | 0.00 | 0.00 | 35.09 | 2.66 |
449 | 706 | 5.885912 | ACGACTTTAATTTCACCATAGCCAT | 59.114 | 36.000 | 0.00 | 0.00 | 0.00 | 4.40 |
450 | 707 | 6.038271 | ACGACTTTAATTTCACCATAGCCATC | 59.962 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
461 | 718 | 2.551721 | CCATAGCCATCGCCAAAGAGAT | 60.552 | 50.000 | 0.00 | 0.00 | 34.57 | 2.75 |
464 | 721 | 1.202698 | AGCCATCGCCAAAGAGATACC | 60.203 | 52.381 | 0.00 | 0.00 | 34.57 | 2.73 |
509 | 766 | 2.783135 | GGAGTCCACAATGACACATGT | 58.217 | 47.619 | 3.60 | 0.00 | 37.73 | 3.21 |
523 | 2599 | 3.550820 | ACACATGTCAACAGTTAGCCAA | 58.449 | 40.909 | 0.00 | 0.00 | 0.00 | 4.52 |
538 | 2615 | 2.334653 | CAAACGCACCAACCGCAT | 59.665 | 55.556 | 0.00 | 0.00 | 0.00 | 4.73 |
543 | 2620 | 2.902419 | CGCACCAACCGCATGACAA | 61.902 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
547 | 2624 | 1.172180 | ACCAACCGCATGACAAGGTG | 61.172 | 55.000 | 0.00 | 0.00 | 38.44 | 4.00 |
548 | 2625 | 1.172180 | CCAACCGCATGACAAGGTGT | 61.172 | 55.000 | 0.00 | 0.00 | 38.44 | 4.16 |
558 | 2635 | 1.134226 | GACAAGGTGTCACCGTTACG | 58.866 | 55.000 | 16.44 | 0.00 | 46.22 | 3.18 |
572 | 2649 | 1.973320 | CGTTACGGGTGCAAATTTTCG | 59.027 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
573 | 2650 | 2.349627 | CGTTACGGGTGCAAATTTTCGA | 60.350 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
613 | 2690 | 6.086222 | ACATTTGAATTGATAGTCACGCAAC | 58.914 | 36.000 | 0.00 | 0.00 | 0.00 | 4.17 |
622 | 2699 | 2.663279 | AGTCACGCAACGTTTTCATC | 57.337 | 45.000 | 0.00 | 0.00 | 38.32 | 2.92 |
630 | 2707 | 4.084223 | ACGCAACGTTTTCATCGTTTCTAT | 60.084 | 37.500 | 0.00 | 0.00 | 46.90 | 1.98 |
676 | 2753 | 2.033550 | TGTGGCGTTCGCAAATTTAGTT | 59.966 | 40.909 | 18.46 | 0.00 | 32.21 | 2.24 |
681 | 2758 | 4.088923 | GGCGTTCGCAAATTTAGTTAAACC | 59.911 | 41.667 | 18.46 | 0.00 | 0.00 | 3.27 |
685 | 2762 | 6.854381 | CGTTCGCAAATTTAGTTAAACCTTCT | 59.146 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
689 | 2766 | 9.275398 | TCGCAAATTTAGTTAAACCTTCTAGAA | 57.725 | 29.630 | 4.81 | 4.81 | 0.00 | 2.10 |
710 | 2787 | 9.665264 | CTAGAAGAAGTCATTTTGTGTTAAACC | 57.335 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
734 | 2825 | 9.990868 | ACCTTAAATCCAGGTCAATTTTATACT | 57.009 | 29.630 | 0.00 | 0.00 | 41.08 | 2.12 |
737 | 2828 | 7.568199 | AAATCCAGGTCAATTTTATACTCCG | 57.432 | 36.000 | 0.00 | 0.00 | 0.00 | 4.63 |
805 | 2896 | 4.405671 | TCGGGCGTCTCGTCTCCT | 62.406 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
819 | 2910 | 2.366640 | TCTCCTGGAGACTAATCCGG | 57.633 | 55.000 | 22.30 | 0.00 | 42.77 | 5.14 |
820 | 2911 | 0.676736 | CTCCTGGAGACTAATCCGGC | 59.323 | 60.000 | 19.13 | 0.00 | 43.42 | 6.13 |
821 | 2912 | 0.032515 | TCCTGGAGACTAATCCGGCA | 60.033 | 55.000 | 0.00 | 0.00 | 43.42 | 5.69 |
822 | 2913 | 0.105039 | CCTGGAGACTAATCCGGCAC | 59.895 | 60.000 | 0.00 | 0.00 | 43.42 | 5.01 |
893 | 3005 | 2.485266 | CGGCCGACGCATCATATATA | 57.515 | 50.000 | 24.07 | 0.00 | 36.38 | 0.86 |
894 | 3006 | 2.117137 | CGGCCGACGCATCATATATAC | 58.883 | 52.381 | 24.07 | 0.00 | 36.38 | 1.47 |
1216 | 3359 | 0.549950 | ATTGGGAGGGAGATGTGCTG | 59.450 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
1556 | 3699 | 1.280133 | TCCATGAGGAGTTCAAGCCTG | 59.720 | 52.381 | 0.00 | 0.00 | 39.61 | 4.85 |
1591 | 3734 | 2.104253 | CGCTTCCGGTACCGCAATT | 61.104 | 57.895 | 29.15 | 0.00 | 38.24 | 2.32 |
1596 | 3739 | 0.528901 | TCCGGTACCGCAATTGATCG | 60.529 | 55.000 | 29.15 | 11.75 | 38.24 | 3.69 |
1599 | 3742 | 1.395608 | CGGTACCGCAATTGATCGTTT | 59.604 | 47.619 | 23.44 | 0.00 | 0.00 | 3.60 |
1600 | 3743 | 2.780993 | GGTACCGCAATTGATCGTTTG | 58.219 | 47.619 | 10.34 | 3.68 | 0.00 | 2.93 |
1601 | 3744 | 2.160813 | GGTACCGCAATTGATCGTTTGT | 59.839 | 45.455 | 10.34 | 0.89 | 0.00 | 2.83 |
1602 | 3745 | 3.371591 | GGTACCGCAATTGATCGTTTGTA | 59.628 | 43.478 | 10.34 | 0.00 | 0.00 | 2.41 |
1603 | 3746 | 3.740044 | ACCGCAATTGATCGTTTGTAG | 57.260 | 42.857 | 10.34 | 4.28 | 0.00 | 2.74 |
1604 | 3747 | 2.418628 | ACCGCAATTGATCGTTTGTAGG | 59.581 | 45.455 | 10.34 | 15.58 | 0.00 | 3.18 |
1605 | 3748 | 2.675844 | CCGCAATTGATCGTTTGTAGGA | 59.324 | 45.455 | 10.34 | 0.00 | 0.00 | 2.94 |
1621 | 3770 | 7.148306 | CGTTTGTAGGAGTATTTTGGTAGCAAT | 60.148 | 37.037 | 8.40 | 0.00 | 0.00 | 3.56 |
1623 | 3772 | 6.119536 | TGTAGGAGTATTTTGGTAGCAATGG | 58.880 | 40.000 | 8.40 | 0.00 | 0.00 | 3.16 |
1624 | 3773 | 5.193099 | AGGAGTATTTTGGTAGCAATGGT | 57.807 | 39.130 | 8.40 | 0.58 | 0.00 | 3.55 |
1626 | 3775 | 5.418840 | AGGAGTATTTTGGTAGCAATGGTTG | 59.581 | 40.000 | 8.40 | 0.00 | 0.00 | 3.77 |
1628 | 3777 | 6.096846 | GGAGTATTTTGGTAGCAATGGTTGAT | 59.903 | 38.462 | 8.40 | 0.00 | 0.00 | 2.57 |
1629 | 3778 | 6.866480 | AGTATTTTGGTAGCAATGGTTGATG | 58.134 | 36.000 | 8.40 | 0.00 | 0.00 | 3.07 |
1631 | 3780 | 2.897271 | TGGTAGCAATGGTTGATGGT | 57.103 | 45.000 | 0.00 | 0.00 | 0.00 | 3.55 |
1649 | 3798 | 5.421693 | TGATGGTTCTATGGGTGAATTTTGG | 59.578 | 40.000 | 0.00 | 0.00 | 0.00 | 3.28 |
1656 | 3805 | 6.414732 | TCTATGGGTGAATTTTGGACTACAG | 58.585 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1672 | 3821 | 2.175878 | ACAGTGACTTGATGCTGGAC | 57.824 | 50.000 | 0.00 | 0.00 | 33.62 | 4.02 |
1673 | 3822 | 1.696336 | ACAGTGACTTGATGCTGGACT | 59.304 | 47.619 | 0.00 | 0.00 | 33.62 | 3.85 |
1674 | 3823 | 2.899900 | ACAGTGACTTGATGCTGGACTA | 59.100 | 45.455 | 0.00 | 0.00 | 33.62 | 2.59 |
1682 | 3831 | 4.141981 | ACTTGATGCTGGACTATCTCTGTG | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 3.66 |
1683 | 3832 | 2.102084 | TGATGCTGGACTATCTCTGTGC | 59.898 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
1798 | 3951 | 3.251484 | GGATTGGGATATGGTCCTGAGA | 58.749 | 50.000 | 0.00 | 0.00 | 46.91 | 3.27 |
1824 | 3977 | 5.488341 | GACCATAGACTTGAACTAGCCAAA | 58.512 | 41.667 | 0.00 | 0.00 | 0.00 | 3.28 |
1894 | 4047 | 0.610785 | CAATGTGCTTACCCCCGGTT | 60.611 | 55.000 | 0.00 | 0.00 | 37.09 | 4.44 |
1899 | 4052 | 1.134699 | GTGCTTACCCCCGGTTAGTAC | 60.135 | 57.143 | 0.00 | 2.99 | 39.70 | 2.73 |
1905 | 4058 | 1.523524 | CCCCGGTTAGTACGCCATT | 59.476 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
1906 | 4059 | 0.107557 | CCCCGGTTAGTACGCCATTT | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 2.32 |
1907 | 4060 | 1.138661 | CCCCGGTTAGTACGCCATTTA | 59.861 | 52.381 | 0.00 | 0.00 | 0.00 | 1.40 |
1908 | 4061 | 2.476821 | CCCGGTTAGTACGCCATTTAG | 58.523 | 52.381 | 0.00 | 0.00 | 0.00 | 1.85 |
1909 | 4062 | 2.159057 | CCCGGTTAGTACGCCATTTAGT | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1910 | 4063 | 3.118542 | CCGGTTAGTACGCCATTTAGTC | 58.881 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1911 | 4064 | 3.181483 | CCGGTTAGTACGCCATTTAGTCT | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 3.24 |
1913 | 4066 | 4.866486 | CGGTTAGTACGCCATTTAGTCTTT | 59.134 | 41.667 | 5.32 | 0.00 | 0.00 | 2.52 |
1914 | 4067 | 5.005107 | CGGTTAGTACGCCATTTAGTCTTTC | 59.995 | 44.000 | 5.32 | 0.00 | 0.00 | 2.62 |
1915 | 4068 | 5.870978 | GGTTAGTACGCCATTTAGTCTTTCA | 59.129 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1923 | 4180 | 7.826690 | ACGCCATTTAGTCTTTCATTTACAAT | 58.173 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
1942 | 4199 | 5.994250 | ACAATCTGTTCATGTATAGGTGCT | 58.006 | 37.500 | 0.00 | 0.00 | 0.00 | 4.40 |
1943 | 4200 | 5.819379 | ACAATCTGTTCATGTATAGGTGCTG | 59.181 | 40.000 | 0.00 | 0.00 | 0.00 | 4.41 |
1945 | 4202 | 5.011090 | TCTGTTCATGTATAGGTGCTGTC | 57.989 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
1947 | 4204 | 4.503910 | TGTTCATGTATAGGTGCTGTCAC | 58.496 | 43.478 | 0.00 | 0.00 | 42.40 | 3.67 |
1948 | 4205 | 4.020662 | TGTTCATGTATAGGTGCTGTCACA | 60.021 | 41.667 | 0.00 | 0.00 | 44.87 | 3.58 |
1949 | 4206 | 5.118990 | GTTCATGTATAGGTGCTGTCACAT | 58.881 | 41.667 | 0.00 | 0.87 | 44.87 | 3.21 |
1950 | 4207 | 4.696455 | TCATGTATAGGTGCTGTCACATG | 58.304 | 43.478 | 6.23 | 6.23 | 44.87 | 3.21 |
1951 | 4208 | 2.905075 | TGTATAGGTGCTGTCACATGC | 58.095 | 47.619 | 0.00 | 0.00 | 44.87 | 4.06 |
1958 | 4215 | 1.020861 | TGCTGTCACATGCCGACATC | 61.021 | 55.000 | 16.47 | 13.61 | 42.27 | 3.06 |
1975 | 4232 | 2.026641 | CATCGATTCCATGGCAAACCT | 58.973 | 47.619 | 6.96 | 0.00 | 36.63 | 3.50 |
1977 | 4234 | 1.818060 | TCGATTCCATGGCAAACCTTG | 59.182 | 47.619 | 6.96 | 0.00 | 40.12 | 3.61 |
1992 | 4357 | 2.944129 | ACCTTGCTGCCTTTTTCAGTA | 58.056 | 42.857 | 0.00 | 0.00 | 34.21 | 2.74 |
2059 | 4424 | 7.213678 | TGATGTATTCACTGCCACGATATTAA | 58.786 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
2158 | 4523 | 7.148069 | GCTTTATCCACTTGTGCTATAAACCTT | 60.148 | 37.037 | 11.78 | 0.00 | 0.00 | 3.50 |
2203 | 4568 | 0.625849 | AGCTATTGTGGGGAAGGGTG | 59.374 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2225 | 4590 | 3.402186 | CCTTTGACAGGTCAGTGCA | 57.598 | 52.632 | 2.01 | 0.00 | 41.13 | 4.57 |
2226 | 4591 | 1.679139 | CCTTTGACAGGTCAGTGCAA | 58.321 | 50.000 | 2.01 | 0.00 | 41.13 | 4.08 |
2227 | 4592 | 2.023673 | CCTTTGACAGGTCAGTGCAAA | 58.976 | 47.619 | 2.01 | 0.00 | 41.13 | 3.68 |
2228 | 4593 | 2.223572 | CCTTTGACAGGTCAGTGCAAAC | 60.224 | 50.000 | 2.01 | 0.00 | 41.13 | 2.93 |
2284 | 4657 | 9.078990 | ACGGATGATATAGTACTTGATTGAAGA | 57.921 | 33.333 | 0.00 | 0.00 | 35.42 | 2.87 |
2305 | 4678 | 8.886719 | TGAAGATTGACATGTCATCTTCAATAC | 58.113 | 33.333 | 39.74 | 29.25 | 46.26 | 1.89 |
2310 | 4683 | 5.291858 | TGACATGTCATCTTCAATACGCTTC | 59.708 | 40.000 | 24.56 | 0.00 | 34.14 | 3.86 |
2312 | 4685 | 4.104696 | TGTCATCTTCAATACGCTTCGA | 57.895 | 40.909 | 0.00 | 0.00 | 0.00 | 3.71 |
2321 | 4698 | 4.055360 | TCAATACGCTTCGACATAATGGG | 58.945 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
2358 | 4735 | 5.633182 | GCAGATGTTAATAGTAGCTCTCAGC | 59.367 | 44.000 | 0.00 | 0.00 | 42.84 | 4.26 |
2381 | 4758 | 7.752239 | CAGCTCTAACACTTGAATTTACCAATG | 59.248 | 37.037 | 0.00 | 0.00 | 0.00 | 2.82 |
2453 | 4830 | 0.625316 | TGATGAAGTGGGACATGGGG | 59.375 | 55.000 | 0.00 | 0.00 | 44.52 | 4.96 |
2690 | 5444 | 0.931005 | GACGATCGAGGCATGTTTCC | 59.069 | 55.000 | 24.34 | 0.00 | 0.00 | 3.13 |
2709 | 5496 | 4.890158 | TCCTGTGATAGTGTGATTGTGT | 57.110 | 40.909 | 0.00 | 0.00 | 0.00 | 3.72 |
2723 | 5510 | 6.016276 | GTGTGATTGTGTTGTTTATCCTCCTT | 60.016 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
2729 | 5517 | 3.572255 | TGTTGTTTATCCTCCTTGTTGGC | 59.428 | 43.478 | 0.00 | 0.00 | 35.26 | 4.52 |
2730 | 5518 | 2.802719 | TGTTTATCCTCCTTGTTGGCC | 58.197 | 47.619 | 0.00 | 0.00 | 35.26 | 5.36 |
2756 | 5544 | 2.962421 | AGTCTAAGCAGGTCCTAGATGC | 59.038 | 50.000 | 0.00 | 0.00 | 40.29 | 3.91 |
2757 | 5545 | 2.695666 | GTCTAAGCAGGTCCTAGATGCA | 59.304 | 50.000 | 3.86 | 0.00 | 42.45 | 3.96 |
2779 | 5570 | 5.563867 | GCAACGTTCTTATGGTCCAATTTGA | 60.564 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2799 | 5590 | 8.687824 | ATTTGAGCTCATTTTTGTAAATACCG | 57.312 | 30.769 | 19.04 | 0.00 | 32.75 | 4.02 |
2891 | 5713 | 4.202111 | ACAAGGTGTTGACAAGGTAAATGC | 60.202 | 41.667 | 0.00 | 0.00 | 37.10 | 3.56 |
2957 | 5786 | 8.901793 | TGCTGTATTTGTATGCTTTGATGATTA | 58.098 | 29.630 | 0.00 | 0.00 | 0.00 | 1.75 |
3066 | 5919 | 6.041751 | GCTAGGGTAATCTGTACTGTTATGGT | 59.958 | 42.308 | 0.00 | 0.00 | 0.00 | 3.55 |
3344 | 6211 | 0.898320 | CAGGGATTCTGACACCGAGT | 59.102 | 55.000 | 0.00 | 0.00 | 46.18 | 4.18 |
3540 | 6407 | 5.402568 | CAGGTGCGTACAGTATGATGTATTC | 59.597 | 44.000 | 5.86 | 0.00 | 39.69 | 1.75 |
3542 | 6409 | 5.983720 | GGTGCGTACAGTATGATGTATTCTT | 59.016 | 40.000 | 5.86 | 0.00 | 39.69 | 2.52 |
3549 | 6418 | 5.590259 | ACAGTATGATGTATTCTTGGGTTGC | 59.410 | 40.000 | 0.00 | 0.00 | 39.69 | 4.17 |
3573 | 6442 | 1.906990 | ATGCTCAGCTCAGTTGCTTT | 58.093 | 45.000 | 0.00 | 0.00 | 41.98 | 3.51 |
3606 | 6475 | 3.003378 | GGTTCTTGGAAGAAACCTGAACG | 59.997 | 47.826 | 5.96 | 0.00 | 44.94 | 3.95 |
3611 | 6480 | 4.139859 | TGGAAGAAACCTGAACGTTGTA | 57.860 | 40.909 | 5.00 | 0.00 | 0.00 | 2.41 |
3663 | 6561 | 1.128692 | GTAATGCTCCTCGTGTTGCAC | 59.871 | 52.381 | 0.00 | 0.00 | 38.29 | 4.57 |
3696 | 6594 | 3.504906 | AGAAAGTTCAGTGGATGCACATG | 59.495 | 43.478 | 20.21 | 14.02 | 0.00 | 3.21 |
3811 | 6709 | 2.672874 | TGAATCAACGAAGATGAAGCCG | 59.327 | 45.455 | 0.00 | 0.00 | 43.92 | 5.52 |
3817 | 6715 | 1.061570 | GAAGATGAAGCCGCGCAAG | 59.938 | 57.895 | 8.75 | 0.00 | 43.44 | 4.01 |
3852 | 6750 | 6.472686 | ACTTGTCTGATGTTATCTCCTACC | 57.527 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
3856 | 6754 | 6.377080 | TGTCTGATGTTATCTCCTACCAGAT | 58.623 | 40.000 | 0.00 | 0.00 | 36.97 | 2.90 |
3864 | 6762 | 2.521286 | TCTCCTACCAGATAAGGGGGA | 58.479 | 52.381 | 0.00 | 0.00 | 33.81 | 4.81 |
3887 | 6785 | 5.777850 | ATTTTACTAGTGCCCACGTTTTT | 57.222 | 34.783 | 5.39 | 0.00 | 36.20 | 1.94 |
3962 | 6860 | 5.713025 | ACTTCACACATGCATGTAATTTCC | 58.287 | 37.500 | 30.92 | 0.00 | 39.39 | 3.13 |
3963 | 6861 | 4.354071 | TCACACATGCATGTAATTTCCG | 57.646 | 40.909 | 30.92 | 18.97 | 39.39 | 4.30 |
3968 | 6866 | 5.645929 | ACACATGCATGTAATTTCCGTTAGA | 59.354 | 36.000 | 30.92 | 0.00 | 39.39 | 2.10 |
3969 | 6867 | 6.150307 | ACACATGCATGTAATTTCCGTTAGAA | 59.850 | 34.615 | 30.92 | 0.00 | 39.39 | 2.10 |
4044 | 6945 | 5.488919 | AGATTGGGAGGATCTGTTTTCAGTA | 59.511 | 40.000 | 0.00 | 0.00 | 46.98 | 2.74 |
4066 | 6967 | 1.627329 | TGAGCTCAGCAAAGATGGACT | 59.373 | 47.619 | 13.74 | 0.00 | 0.00 | 3.85 |
4116 | 7017 | 1.246649 | TGTGCCCACATTTGTGCTAG | 58.753 | 50.000 | 5.15 | 0.00 | 44.34 | 3.42 |
4153 | 8597 | 8.596380 | CAGCCTAAAATGTTTTAAAAACGTTCA | 58.404 | 29.630 | 0.00 | 0.00 | 32.73 | 3.18 |
4158 | 8602 | 8.371053 | TAAAATGTTTTAAAAACGTTCACCACG | 58.629 | 29.630 | 0.00 | 0.00 | 40.87 | 4.94 |
4177 | 8621 | 7.486551 | TCACCACGCATTTAAAAGTATTAATGC | 59.513 | 33.333 | 0.00 | 0.00 | 45.71 | 3.56 |
4536 | 8986 | 9.846248 | AGTAAAATGTTCAATGTGAATAGAAGC | 57.154 | 29.630 | 0.00 | 0.00 | 38.79 | 3.86 |
4537 | 8987 | 9.846248 | GTAAAATGTTCAATGTGAATAGAAGCT | 57.154 | 29.630 | 0.00 | 0.00 | 38.79 | 3.74 |
4538 | 8988 | 8.976986 | AAAATGTTCAATGTGAATAGAAGCTC | 57.023 | 30.769 | 0.00 | 0.00 | 38.79 | 4.09 |
4539 | 8989 | 6.690194 | ATGTTCAATGTGAATAGAAGCTCC | 57.310 | 37.500 | 0.00 | 0.00 | 38.79 | 4.70 |
4540 | 8990 | 4.943705 | TGTTCAATGTGAATAGAAGCTCCC | 59.056 | 41.667 | 0.00 | 0.00 | 38.79 | 4.30 |
4541 | 8991 | 4.842531 | TCAATGTGAATAGAAGCTCCCA | 57.157 | 40.909 | 0.00 | 0.00 | 0.00 | 4.37 |
4542 | 8992 | 4.517285 | TCAATGTGAATAGAAGCTCCCAC | 58.483 | 43.478 | 0.00 | 0.00 | 0.00 | 4.61 |
4543 | 8993 | 4.019411 | TCAATGTGAATAGAAGCTCCCACA | 60.019 | 41.667 | 0.00 | 0.00 | 38.63 | 4.17 |
4544 | 8994 | 3.334583 | TGTGAATAGAAGCTCCCACAC | 57.665 | 47.619 | 0.00 | 0.00 | 30.67 | 3.82 |
4545 | 8995 | 2.637382 | TGTGAATAGAAGCTCCCACACA | 59.363 | 45.455 | 0.00 | 0.00 | 35.24 | 3.72 |
4546 | 8996 | 3.072330 | TGTGAATAGAAGCTCCCACACAA | 59.928 | 43.478 | 0.00 | 0.00 | 34.81 | 3.33 |
4547 | 8997 | 3.686726 | GTGAATAGAAGCTCCCACACAAG | 59.313 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
4548 | 8998 | 3.274288 | GAATAGAAGCTCCCACACAAGG | 58.726 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
4549 | 8999 | 1.729586 | TAGAAGCTCCCACACAAGGT | 58.270 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
4557 | 9007 | 4.481195 | CACACAAGGTGGGGTCTG | 57.519 | 61.111 | 1.07 | 0.00 | 44.04 | 3.51 |
4558 | 9008 | 1.228245 | CACACAAGGTGGGGTCTGG | 60.228 | 63.158 | 1.07 | 0.00 | 44.04 | 3.86 |
4559 | 9009 | 2.436109 | CACAAGGTGGGGTCTGGG | 59.564 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
4560 | 9010 | 2.858974 | ACAAGGTGGGGTCTGGGG | 60.859 | 66.667 | 0.00 | 0.00 | 0.00 | 4.96 |
4561 | 9011 | 2.531685 | CAAGGTGGGGTCTGGGGA | 60.532 | 66.667 | 0.00 | 0.00 | 0.00 | 4.81 |
4562 | 9012 | 2.204151 | AAGGTGGGGTCTGGGGAG | 60.204 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
4563 | 9013 | 3.891432 | AAGGTGGGGTCTGGGGAGG | 62.891 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
4565 | 9015 | 4.348495 | GTGGGGTCTGGGGAGGGA | 62.348 | 72.222 | 0.00 | 0.00 | 0.00 | 4.20 |
4566 | 9016 | 3.300962 | TGGGGTCTGGGGAGGGAT | 61.301 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
4567 | 9017 | 2.044620 | GGGGTCTGGGGAGGGATT | 59.955 | 66.667 | 0.00 | 0.00 | 0.00 | 3.01 |
4568 | 9018 | 1.320512 | GGGGTCTGGGGAGGGATTA | 59.679 | 63.158 | 0.00 | 0.00 | 0.00 | 1.75 |
4569 | 9019 | 0.103876 | GGGGTCTGGGGAGGGATTAT | 60.104 | 60.000 | 0.00 | 0.00 | 0.00 | 1.28 |
4570 | 9020 | 1.153565 | GGGGTCTGGGGAGGGATTATA | 59.846 | 57.143 | 0.00 | 0.00 | 0.00 | 0.98 |
4571 | 9021 | 2.552367 | GGGTCTGGGGAGGGATTATAG | 58.448 | 57.143 | 0.00 | 0.00 | 0.00 | 1.31 |
4572 | 9022 | 2.552367 | GGTCTGGGGAGGGATTATAGG | 58.448 | 57.143 | 0.00 | 0.00 | 0.00 | 2.57 |
4573 | 9023 | 2.113777 | GGTCTGGGGAGGGATTATAGGA | 59.886 | 54.545 | 0.00 | 0.00 | 0.00 | 2.94 |
4574 | 9024 | 3.441054 | GGTCTGGGGAGGGATTATAGGAA | 60.441 | 52.174 | 0.00 | 0.00 | 0.00 | 3.36 |
4575 | 9025 | 3.583526 | GTCTGGGGAGGGATTATAGGAAC | 59.416 | 52.174 | 0.00 | 0.00 | 0.00 | 3.62 |
4576 | 9026 | 2.913617 | CTGGGGAGGGATTATAGGAACC | 59.086 | 54.545 | 0.00 | 0.00 | 0.00 | 3.62 |
4577 | 9027 | 2.531463 | TGGGGAGGGATTATAGGAACCT | 59.469 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
4578 | 9028 | 3.741438 | TGGGGAGGGATTATAGGAACCTA | 59.259 | 47.826 | 2.93 | 2.93 | 0.00 | 3.08 |
4579 | 9029 | 4.202901 | TGGGGAGGGATTATAGGAACCTAG | 60.203 | 50.000 | 6.72 | 0.00 | 31.45 | 3.02 |
4580 | 9030 | 4.202912 | GGGGAGGGATTATAGGAACCTAGT | 60.203 | 50.000 | 6.72 | 0.00 | 31.45 | 2.57 |
4581 | 9031 | 5.024785 | GGGAGGGATTATAGGAACCTAGTC | 58.975 | 50.000 | 6.72 | 4.93 | 31.45 | 2.59 |
4582 | 9032 | 5.222589 | GGGAGGGATTATAGGAACCTAGTCT | 60.223 | 48.000 | 6.72 | 0.00 | 31.45 | 3.24 |
4583 | 9033 | 6.324544 | GGAGGGATTATAGGAACCTAGTCTT | 58.675 | 44.000 | 6.72 | 0.00 | 31.45 | 3.01 |
4584 | 9034 | 6.211785 | GGAGGGATTATAGGAACCTAGTCTTG | 59.788 | 46.154 | 6.72 | 0.00 | 31.45 | 3.02 |
4585 | 9035 | 5.544562 | AGGGATTATAGGAACCTAGTCTTGC | 59.455 | 44.000 | 6.72 | 0.00 | 31.45 | 4.01 |
4586 | 9036 | 5.280062 | GGGATTATAGGAACCTAGTCTTGCC | 60.280 | 48.000 | 6.72 | 3.19 | 31.45 | 4.52 |
4587 | 9037 | 5.280062 | GGATTATAGGAACCTAGTCTTGCCC | 60.280 | 48.000 | 6.72 | 0.00 | 31.45 | 5.36 |
4588 | 9038 | 1.875488 | TAGGAACCTAGTCTTGCCCC | 58.125 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
4589 | 9039 | 0.119358 | AGGAACCTAGTCTTGCCCCT | 59.881 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4590 | 9040 | 0.253327 | GGAACCTAGTCTTGCCCCTG | 59.747 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
4591 | 9041 | 0.393132 | GAACCTAGTCTTGCCCCTGC | 60.393 | 60.000 | 0.00 | 0.00 | 38.26 | 4.85 |
4609 | 9059 | 1.978542 | GCAAAGTGCAATGCAGAGAG | 58.021 | 50.000 | 8.73 | 0.33 | 44.26 | 3.20 |
4610 | 9060 | 1.402456 | GCAAAGTGCAATGCAGAGAGG | 60.402 | 52.381 | 8.73 | 0.00 | 44.26 | 3.69 |
4611 | 9061 | 0.886563 | AAAGTGCAATGCAGAGAGGC | 59.113 | 50.000 | 8.73 | 0.00 | 40.08 | 4.70 |
4612 | 9062 | 0.037877 | AAGTGCAATGCAGAGAGGCT | 59.962 | 50.000 | 8.73 | 0.00 | 40.08 | 4.58 |
4614 | 9064 | 1.378119 | TGCAATGCAGAGAGGCTGG | 60.378 | 57.895 | 2.72 | 0.00 | 45.03 | 4.85 |
4615 | 9065 | 1.378250 | GCAATGCAGAGAGGCTGGT | 60.378 | 57.895 | 0.00 | 0.00 | 45.03 | 4.00 |
4616 | 9066 | 0.964358 | GCAATGCAGAGAGGCTGGTT | 60.964 | 55.000 | 0.00 | 0.00 | 45.03 | 3.67 |
4617 | 9067 | 1.093159 | CAATGCAGAGAGGCTGGTTC | 58.907 | 55.000 | 0.00 | 0.00 | 45.03 | 3.62 |
4618 | 9068 | 0.392193 | AATGCAGAGAGGCTGGTTCG | 60.392 | 55.000 | 0.00 | 0.00 | 45.03 | 3.95 |
4619 | 9069 | 1.260538 | ATGCAGAGAGGCTGGTTCGA | 61.261 | 55.000 | 0.00 | 0.00 | 45.03 | 3.71 |
4620 | 9070 | 1.293498 | GCAGAGAGGCTGGTTCGAA | 59.707 | 57.895 | 0.00 | 0.00 | 45.03 | 3.71 |
4621 | 9071 | 1.016653 | GCAGAGAGGCTGGTTCGAAC | 61.017 | 60.000 | 20.14 | 20.14 | 45.03 | 3.95 |
4630 | 9080 | 3.479979 | GGTTCGAACCCAGGACCT | 58.520 | 61.111 | 33.02 | 0.00 | 43.43 | 3.85 |
4631 | 9081 | 1.295746 | GGTTCGAACCCAGGACCTC | 59.704 | 63.158 | 33.02 | 7.79 | 43.43 | 3.85 |
4632 | 9082 | 1.192803 | GGTTCGAACCCAGGACCTCT | 61.193 | 60.000 | 33.02 | 0.00 | 43.43 | 3.69 |
4633 | 9083 | 0.685660 | GTTCGAACCCAGGACCTCTT | 59.314 | 55.000 | 17.68 | 0.00 | 0.00 | 2.85 |
4634 | 9084 | 0.685097 | TTCGAACCCAGGACCTCTTG | 59.315 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4635 | 9085 | 1.192146 | TCGAACCCAGGACCTCTTGG | 61.192 | 60.000 | 0.00 | 0.00 | 42.20 | 3.61 |
4636 | 9086 | 1.002011 | GAACCCAGGACCTCTTGGC | 60.002 | 63.158 | 0.00 | 0.00 | 41.31 | 4.52 |
4637 | 9087 | 1.774217 | AACCCAGGACCTCTTGGCA | 60.774 | 57.895 | 0.00 | 0.00 | 41.31 | 4.92 |
4638 | 9088 | 2.069165 | AACCCAGGACCTCTTGGCAC | 62.069 | 60.000 | 0.00 | 0.00 | 41.31 | 5.01 |
4639 | 9089 | 2.528818 | CCCAGGACCTCTTGGCACA | 61.529 | 63.158 | 0.00 | 0.00 | 41.31 | 4.57 |
4650 | 9100 | 4.966123 | TGGCACAAGTGGTTCGAA | 57.034 | 50.000 | 0.00 | 0.00 | 31.92 | 3.71 |
4651 | 9101 | 2.399856 | TGGCACAAGTGGTTCGAAC | 58.600 | 52.632 | 20.14 | 20.14 | 31.92 | 3.95 |
4652 | 9102 | 1.098712 | TGGCACAAGTGGTTCGAACC | 61.099 | 55.000 | 35.49 | 35.49 | 42.90 | 3.62 |
4741 | 9191 | 9.688592 | AAAAATTTGACATGTTTTTGCAGAAAA | 57.311 | 22.222 | 3.66 | 3.63 | 34.71 | 2.29 |
4829 | 9279 | 9.773328 | ATGTTCAACGTGTATAAAAATGATCAG | 57.227 | 29.630 | 0.09 | 0.00 | 0.00 | 2.90 |
4830 | 9280 | 7.748683 | TGTTCAACGTGTATAAAAATGATCAGC | 59.251 | 33.333 | 0.09 | 0.00 | 0.00 | 4.26 |
4831 | 9281 | 6.781138 | TCAACGTGTATAAAAATGATCAGCC | 58.219 | 36.000 | 0.09 | 0.00 | 0.00 | 4.85 |
4832 | 9282 | 6.597672 | TCAACGTGTATAAAAATGATCAGCCT | 59.402 | 34.615 | 0.09 | 0.00 | 0.00 | 4.58 |
4833 | 9283 | 7.120579 | TCAACGTGTATAAAAATGATCAGCCTT | 59.879 | 33.333 | 0.09 | 0.00 | 0.00 | 4.35 |
4834 | 9284 | 7.391148 | ACGTGTATAAAAATGATCAGCCTTT | 57.609 | 32.000 | 0.09 | 3.35 | 0.00 | 3.11 |
4835 | 9285 | 7.826690 | ACGTGTATAAAAATGATCAGCCTTTT | 58.173 | 30.769 | 0.09 | 9.41 | 0.00 | 2.27 |
4836 | 9286 | 8.952278 | ACGTGTATAAAAATGATCAGCCTTTTA | 58.048 | 29.630 | 16.40 | 16.40 | 0.00 | 1.52 |
4837 | 9287 | 9.950680 | CGTGTATAAAAATGATCAGCCTTTTAT | 57.049 | 29.630 | 23.07 | 23.07 | 37.57 | 1.40 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
4 | 5 | 6.417191 | TTTTAGTTGCGTGAGGATGATAAC | 57.583 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
230 | 485 | 9.180678 | GGTATTCATTTATTAACCGAGCAATTG | 57.819 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
237 | 492 | 9.902684 | TTTACCTGGTATTCATTTATTAACCGA | 57.097 | 29.630 | 7.50 | 0.00 | 0.00 | 4.69 |
253 | 508 | 8.788806 | CATGTCTGTAACAATTTTTACCTGGTA | 58.211 | 33.333 | 11.08 | 1.49 | 42.37 | 3.25 |
260 | 516 | 7.433719 | GTGTGTGCATGTCTGTAACAATTTTTA | 59.566 | 33.333 | 0.00 | 0.00 | 42.37 | 1.52 |
266 | 522 | 3.274288 | TGTGTGTGCATGTCTGTAACAA | 58.726 | 40.909 | 0.00 | 0.00 | 42.37 | 2.83 |
267 | 523 | 2.911484 | TGTGTGTGCATGTCTGTAACA | 58.089 | 42.857 | 0.00 | 0.00 | 43.51 | 2.41 |
277 | 533 | 1.902918 | ATGGCGGTTGTGTGTGCAT | 60.903 | 52.632 | 0.00 | 0.00 | 0.00 | 3.96 |
289 | 545 | 0.816825 | CCTGTCATCCTTCATGGCGG | 60.817 | 60.000 | 0.00 | 0.00 | 40.38 | 6.13 |
290 | 546 | 0.107508 | ACCTGTCATCCTTCATGGCG | 60.108 | 55.000 | 0.00 | 0.00 | 40.38 | 5.69 |
304 | 560 | 5.473504 | GGTTTGTCATTATGTCTTCACCTGT | 59.526 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
308 | 564 | 5.473504 | ACCAGGTTTGTCATTATGTCTTCAC | 59.526 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
314 | 570 | 3.751175 | CGTGACCAGGTTTGTCATTATGT | 59.249 | 43.478 | 0.00 | 0.00 | 43.98 | 2.29 |
315 | 571 | 4.000325 | TCGTGACCAGGTTTGTCATTATG | 59.000 | 43.478 | 0.00 | 0.00 | 43.98 | 1.90 |
317 | 573 | 3.755112 | TCGTGACCAGGTTTGTCATTA | 57.245 | 42.857 | 0.00 | 0.00 | 43.98 | 1.90 |
324 | 580 | 2.014128 | CTTGTGTTCGTGACCAGGTTT | 58.986 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
332 | 588 | 1.946745 | TGTGATGCTTGTGTTCGTGA | 58.053 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
359 | 616 | 4.631377 | TCAACGGATACTTTGCTTCTCATG | 59.369 | 41.667 | 0.00 | 0.00 | 44.91 | 3.07 |
372 | 629 | 0.582005 | GCGGCAATCTCAACGGATAC | 59.418 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
373 | 630 | 0.176910 | TGCGGCAATCTCAACGGATA | 59.823 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
377 | 634 | 1.584483 | GCATGCGGCAATCTCAACG | 60.584 | 57.895 | 6.82 | 0.00 | 43.97 | 4.10 |
389 | 646 | 1.256376 | GTAGTCACGATGAAGCATGCG | 59.744 | 52.381 | 13.01 | 0.00 | 0.00 | 4.73 |
407 | 664 | 4.021192 | AGTCGTTTGTTCGGGAAATAGGTA | 60.021 | 41.667 | 0.00 | 0.00 | 0.00 | 3.08 |
415 | 672 | 5.296283 | TGAAATTAAAGTCGTTTGTTCGGGA | 59.704 | 36.000 | 0.00 | 0.00 | 0.00 | 5.14 |
419 | 676 | 7.924103 | ATGGTGAAATTAAAGTCGTTTGTTC | 57.076 | 32.000 | 0.00 | 0.00 | 0.00 | 3.18 |
431 | 688 | 3.568007 | GGCGATGGCTATGGTGAAATTAA | 59.432 | 43.478 | 0.00 | 0.00 | 39.81 | 1.40 |
432 | 689 | 3.146066 | GGCGATGGCTATGGTGAAATTA | 58.854 | 45.455 | 0.00 | 0.00 | 39.81 | 1.40 |
449 | 706 | 2.093658 | GGTGAAGGTATCTCTTTGGCGA | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 5.54 |
450 | 707 | 2.280628 | GGTGAAGGTATCTCTTTGGCG | 58.719 | 52.381 | 0.00 | 0.00 | 0.00 | 5.69 |
464 | 721 | 1.153823 | CTACGGACCTGCGGTGAAG | 60.154 | 63.158 | 4.94 | 0.00 | 35.25 | 3.02 |
480 | 737 | 1.262417 | TTGTGGACTCCGTGCATCTA | 58.738 | 50.000 | 0.00 | 0.00 | 36.11 | 1.98 |
509 | 766 | 1.332375 | GTGCGTTTGGCTAACTGTTGA | 59.668 | 47.619 | 9.97 | 0.00 | 44.05 | 3.18 |
523 | 2599 | 2.593148 | TCATGCGGTTGGTGCGTT | 60.593 | 55.556 | 0.00 | 0.00 | 34.24 | 4.84 |
538 | 2615 | 4.727244 | CCGTAACGGTGACACCTTGTCA | 62.727 | 54.545 | 22.14 | 4.88 | 45.83 | 3.58 |
543 | 2620 | 1.833934 | ACCCGTAACGGTGACACCT | 60.834 | 57.895 | 22.14 | 7.32 | 46.80 | 4.00 |
550 | 2627 | 1.320507 | AAATTTGCACCCGTAACGGT | 58.679 | 45.000 | 0.00 | 0.00 | 46.80 | 4.83 |
552 | 2629 | 1.973320 | CGAAAATTTGCACCCGTAACG | 59.027 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
558 | 2635 | 1.414378 | CCGTTCGAAAATTTGCACCC | 58.586 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
572 | 2649 | 6.683715 | TCAAATGTTTATCTTTTCCCCGTTC | 58.316 | 36.000 | 0.00 | 0.00 | 0.00 | 3.95 |
573 | 2650 | 6.658188 | TCAAATGTTTATCTTTTCCCCGTT | 57.342 | 33.333 | 0.00 | 0.00 | 0.00 | 4.44 |
613 | 2690 | 9.755064 | ATTGAACTAATAGAAACGATGAAAACG | 57.245 | 29.630 | 0.00 | 0.00 | 38.45 | 3.60 |
622 | 2699 | 7.515643 | ACGTTTGGATTGAACTAATAGAAACG | 58.484 | 34.615 | 17.61 | 17.61 | 46.31 | 3.60 |
630 | 2707 | 2.481185 | GGCGACGTTTGGATTGAACTAA | 59.519 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
664 | 2741 | 9.543018 | CTTCTAGAAGGTTTAACTAAATTTGCG | 57.457 | 33.333 | 22.67 | 0.00 | 34.87 | 4.85 |
685 | 2762 | 9.403583 | AGGTTTAACACAAAATGACTTCTTCTA | 57.596 | 29.630 | 0.00 | 0.00 | 0.00 | 2.10 |
734 | 2825 | 1.543607 | TGCATTGCAGGAAATTCGGA | 58.456 | 45.000 | 7.38 | 0.00 | 33.32 | 4.55 |
735 | 2826 | 2.367030 | TTGCATTGCAGGAAATTCGG | 57.633 | 45.000 | 11.76 | 0.00 | 40.61 | 4.30 |
736 | 2827 | 3.513662 | TGATTGCATTGCAGGAAATTCG | 58.486 | 40.909 | 11.76 | 0.00 | 40.61 | 3.34 |
737 | 2828 | 4.208460 | CGATGATTGCATTGCAGGAAATTC | 59.792 | 41.667 | 11.76 | 5.16 | 40.61 | 2.17 |
805 | 2896 | 1.813859 | CGTGCCGGATTAGTCTCCA | 59.186 | 57.895 | 5.05 | 0.00 | 34.78 | 3.86 |
835 | 2926 | 3.041940 | GACTGGGACGTGCCGTTG | 61.042 | 66.667 | 21.93 | 15.73 | 41.37 | 4.10 |
836 | 2927 | 4.657824 | CGACTGGGACGTGCCGTT | 62.658 | 66.667 | 21.93 | 10.48 | 41.37 | 4.44 |
890 | 3002 | 1.096967 | TGAAGCGGAGGCGACGTATA | 61.097 | 55.000 | 0.00 | 0.00 | 46.35 | 1.47 |
893 | 3005 | 4.719369 | GTGAAGCGGAGGCGACGT | 62.719 | 66.667 | 0.00 | 0.00 | 46.35 | 4.34 |
934 | 3077 | 2.271024 | GACGACGACGACGATGACGA | 62.271 | 60.000 | 25.15 | 0.00 | 41.06 | 4.20 |
935 | 3078 | 1.922220 | GACGACGACGACGATGACG | 60.922 | 63.158 | 25.15 | 14.84 | 42.66 | 4.35 |
936 | 3079 | 3.945240 | GACGACGACGACGATGAC | 58.055 | 61.111 | 25.15 | 10.08 | 42.66 | 3.06 |
942 | 3085 | 2.862448 | CCGAACGACGACGACGAC | 60.862 | 66.667 | 25.15 | 16.36 | 45.77 | 4.34 |
943 | 3086 | 4.724697 | GCCGAACGACGACGACGA | 62.725 | 66.667 | 25.15 | 0.00 | 45.77 | 4.20 |
1088 | 3231 | 2.356313 | CAGTTCAGAGCACCGCGT | 60.356 | 61.111 | 4.92 | 0.00 | 0.00 | 6.01 |
1157 | 3300 | 1.798735 | CGGCGAAAGAGACCTACGA | 59.201 | 57.895 | 0.00 | 0.00 | 0.00 | 3.43 |
1158 | 3301 | 1.872679 | GCGGCGAAAGAGACCTACG | 60.873 | 63.158 | 12.98 | 0.00 | 0.00 | 3.51 |
1189 | 3332 | 2.113986 | CCCTCCCAATCGGATGGC | 59.886 | 66.667 | 0.00 | 0.00 | 39.34 | 4.40 |
1360 | 3503 | 2.610859 | AGGCGGAGGACCACCAAT | 60.611 | 61.111 | 8.82 | 0.00 | 40.59 | 3.16 |
1461 | 3604 | 0.458025 | GACCGACGCGAAGGATTCTT | 60.458 | 55.000 | 25.88 | 7.77 | 44.75 | 2.52 |
1462 | 3605 | 1.139095 | GACCGACGCGAAGGATTCT | 59.861 | 57.895 | 25.88 | 8.09 | 44.75 | 2.40 |
1591 | 3734 | 6.469410 | ACCAAAATACTCCTACAAACGATCA | 58.531 | 36.000 | 0.00 | 0.00 | 0.00 | 2.92 |
1596 | 3739 | 7.443259 | TTGCTACCAAAATACTCCTACAAAC | 57.557 | 36.000 | 0.00 | 0.00 | 0.00 | 2.93 |
1599 | 3742 | 6.119536 | CCATTGCTACCAAAATACTCCTACA | 58.880 | 40.000 | 0.00 | 0.00 | 34.05 | 2.74 |
1600 | 3743 | 6.120220 | ACCATTGCTACCAAAATACTCCTAC | 58.880 | 40.000 | 0.00 | 0.00 | 34.05 | 3.18 |
1601 | 3744 | 6.321821 | ACCATTGCTACCAAAATACTCCTA | 57.678 | 37.500 | 0.00 | 0.00 | 34.05 | 2.94 |
1602 | 3745 | 5.193099 | ACCATTGCTACCAAAATACTCCT | 57.807 | 39.130 | 0.00 | 0.00 | 34.05 | 3.69 |
1603 | 3746 | 5.417580 | TCAACCATTGCTACCAAAATACTCC | 59.582 | 40.000 | 0.00 | 0.00 | 34.05 | 3.85 |
1604 | 3747 | 6.509418 | TCAACCATTGCTACCAAAATACTC | 57.491 | 37.500 | 0.00 | 0.00 | 34.05 | 2.59 |
1605 | 3748 | 6.127366 | CCATCAACCATTGCTACCAAAATACT | 60.127 | 38.462 | 0.00 | 0.00 | 34.05 | 2.12 |
1621 | 3770 | 2.916269 | TCACCCATAGAACCATCAACCA | 59.084 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
1623 | 3772 | 6.530019 | AAATTCACCCATAGAACCATCAAC | 57.470 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
1624 | 3773 | 6.070881 | CCAAAATTCACCCATAGAACCATCAA | 60.071 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
1626 | 3775 | 5.656416 | TCCAAAATTCACCCATAGAACCATC | 59.344 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1628 | 3777 | 4.770010 | GTCCAAAATTCACCCATAGAACCA | 59.230 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
1629 | 3778 | 5.016831 | AGTCCAAAATTCACCCATAGAACC | 58.983 | 41.667 | 0.00 | 0.00 | 0.00 | 3.62 |
1631 | 3780 | 6.785076 | TGTAGTCCAAAATTCACCCATAGAA | 58.215 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
1649 | 3798 | 3.056536 | TCCAGCATCAAGTCACTGTAGTC | 60.057 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
1656 | 3805 | 4.099266 | AGAGATAGTCCAGCATCAAGTCAC | 59.901 | 45.833 | 0.00 | 0.00 | 0.00 | 3.67 |
1672 | 3821 | 4.906423 | GCAGTTCAAATGCACAGAGATAG | 58.094 | 43.478 | 4.61 | 0.00 | 43.31 | 2.08 |
1673 | 3822 | 4.952262 | GCAGTTCAAATGCACAGAGATA | 57.048 | 40.909 | 4.61 | 0.00 | 43.31 | 1.98 |
1674 | 3823 | 3.844577 | GCAGTTCAAATGCACAGAGAT | 57.155 | 42.857 | 4.61 | 0.00 | 43.31 | 2.75 |
1682 | 3831 | 2.035066 | ACAGTTCCTGCAGTTCAAATGC | 59.965 | 45.455 | 13.81 | 1.98 | 44.11 | 3.56 |
1683 | 3832 | 3.635331 | CACAGTTCCTGCAGTTCAAATG | 58.365 | 45.455 | 13.81 | 13.46 | 34.37 | 2.32 |
1711 | 3864 | 4.395231 | TCTGTATCTGTTGTCCTCGTACAG | 59.605 | 45.833 | 0.00 | 0.00 | 40.42 | 2.74 |
1798 | 3951 | 4.101741 | GGCTAGTTCAAGTCTATGGTCCAT | 59.898 | 45.833 | 9.88 | 9.88 | 0.00 | 3.41 |
1824 | 3977 | 0.396435 | TCACGCCTGAGGAAACATGT | 59.604 | 50.000 | 0.65 | 0.00 | 0.00 | 3.21 |
1894 | 4047 | 9.090692 | GTAAATGAAAGACTAAATGGCGTACTA | 57.909 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
1899 | 4052 | 8.184192 | AGATTGTAAATGAAAGACTAAATGGCG | 58.816 | 33.333 | 0.00 | 0.00 | 0.00 | 5.69 |
1907 | 4060 | 9.071276 | ACATGAACAGATTGTAAATGAAAGACT | 57.929 | 29.630 | 0.00 | 0.00 | 31.55 | 3.24 |
1915 | 4068 | 8.840321 | GCACCTATACATGAACAGATTGTAAAT | 58.160 | 33.333 | 0.00 | 0.00 | 30.29 | 1.40 |
1923 | 4180 | 4.466015 | TGACAGCACCTATACATGAACAGA | 59.534 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
1943 | 4200 | 1.258982 | GAATCGATGTCGGCATGTGAC | 59.741 | 52.381 | 7.54 | 11.80 | 40.29 | 3.67 |
1945 | 4202 | 0.583438 | GGAATCGATGTCGGCATGTG | 59.417 | 55.000 | 7.54 | 0.00 | 40.29 | 3.21 |
1947 | 4204 | 1.196127 | CATGGAATCGATGTCGGCATG | 59.804 | 52.381 | 7.54 | 0.00 | 40.29 | 4.06 |
1948 | 4205 | 1.516161 | CATGGAATCGATGTCGGCAT | 58.484 | 50.000 | 0.00 | 0.00 | 40.29 | 4.40 |
1949 | 4206 | 0.532640 | CCATGGAATCGATGTCGGCA | 60.533 | 55.000 | 5.56 | 0.00 | 40.29 | 5.69 |
1950 | 4207 | 1.845809 | GCCATGGAATCGATGTCGGC | 61.846 | 60.000 | 18.40 | 3.70 | 40.29 | 5.54 |
1951 | 4208 | 0.532640 | TGCCATGGAATCGATGTCGG | 60.533 | 55.000 | 18.40 | 0.00 | 40.29 | 4.79 |
1958 | 4215 | 2.282701 | CAAGGTTTGCCATGGAATCG | 57.717 | 50.000 | 18.40 | 0.00 | 37.19 | 3.34 |
1975 | 4232 | 2.034558 | GCACTACTGAAAAAGGCAGCAA | 59.965 | 45.455 | 0.00 | 0.00 | 36.86 | 3.91 |
1977 | 4234 | 1.882623 | AGCACTACTGAAAAAGGCAGC | 59.117 | 47.619 | 0.00 | 0.00 | 36.86 | 5.25 |
1978 | 4235 | 2.158449 | CGAGCACTACTGAAAAAGGCAG | 59.842 | 50.000 | 0.00 | 0.00 | 39.26 | 4.85 |
1979 | 4236 | 2.143122 | CGAGCACTACTGAAAAAGGCA | 58.857 | 47.619 | 0.00 | 0.00 | 0.00 | 4.75 |
1980 | 4237 | 1.135944 | GCGAGCACTACTGAAAAAGGC | 60.136 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
1981 | 4238 | 1.126846 | CGCGAGCACTACTGAAAAAGG | 59.873 | 52.381 | 0.00 | 0.00 | 0.00 | 3.11 |
1982 | 4239 | 1.126846 | CCGCGAGCACTACTGAAAAAG | 59.873 | 52.381 | 8.23 | 0.00 | 0.00 | 2.27 |
2059 | 4424 | 2.023673 | CTCTCTGCATCTCTCCTCGTT | 58.976 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
2158 | 4523 | 4.705110 | TTCTCTTGACATTTCCACCAGA | 57.295 | 40.909 | 0.00 | 0.00 | 0.00 | 3.86 |
2208 | 4573 | 2.684881 | AGTTTGCACTGACCTGTCAAAG | 59.315 | 45.455 | 1.14 | 0.00 | 39.39 | 2.77 |
2223 | 4588 | 5.903764 | TCACAAAATATGCACAAGTTTGC | 57.096 | 34.783 | 18.46 | 3.86 | 43.31 | 3.68 |
2269 | 4642 | 7.879677 | TGACATGTCAATCTTCAATCAAGTACT | 59.120 | 33.333 | 26.02 | 0.00 | 36.53 | 2.73 |
2270 | 4643 | 8.032952 | TGACATGTCAATCTTCAATCAAGTAC | 57.967 | 34.615 | 26.02 | 0.00 | 36.53 | 2.73 |
2271 | 4644 | 8.797350 | ATGACATGTCAATCTTCAATCAAGTA | 57.203 | 30.769 | 31.00 | 2.84 | 43.58 | 2.24 |
2272 | 4645 | 7.610692 | AGATGACATGTCAATCTTCAATCAAGT | 59.389 | 33.333 | 31.00 | 10.41 | 43.58 | 3.16 |
2284 | 4657 | 5.819379 | AGCGTATTGAAGATGACATGTCAAT | 59.181 | 36.000 | 31.00 | 20.44 | 43.58 | 2.57 |
2289 | 4662 | 4.504097 | TCGAAGCGTATTGAAGATGACATG | 59.496 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
2305 | 4678 | 2.225068 | ACTCCCATTATGTCGAAGCG | 57.775 | 50.000 | 0.00 | 0.00 | 0.00 | 4.68 |
2310 | 4683 | 6.029607 | CACAAAATGAACTCCCATTATGTCG | 58.970 | 40.000 | 0.00 | 0.00 | 35.86 | 4.35 |
2312 | 4685 | 5.245751 | TGCACAAAATGAACTCCCATTATGT | 59.754 | 36.000 | 0.00 | 0.00 | 35.86 | 2.29 |
2321 | 4698 | 9.282247 | CTATTAACATCTGCACAAAATGAACTC | 57.718 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
2358 | 4735 | 8.567948 | ACACATTGGTAAATTCAAGTGTTAGAG | 58.432 | 33.333 | 0.00 | 0.00 | 35.30 | 2.43 |
2381 | 4758 | 1.890876 | TGTATCCACCACTGCAACAC | 58.109 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
2453 | 4830 | 0.737219 | CAAATACTGCTGCAGAGCCC | 59.263 | 55.000 | 34.28 | 0.00 | 45.57 | 5.19 |
2573 | 5327 | 6.496565 | ACAATAAAATGGACCTGTGAAATGGA | 59.503 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
2690 | 5444 | 5.929697 | ACAACACAATCACACTATCACAG | 57.070 | 39.130 | 0.00 | 0.00 | 0.00 | 3.66 |
2709 | 5496 | 3.161866 | GGCCAACAAGGAGGATAAACAA | 58.838 | 45.455 | 0.00 | 0.00 | 41.22 | 2.83 |
2723 | 5510 | 2.304470 | TGCTTAGACTACATGGCCAACA | 59.696 | 45.455 | 10.96 | 0.00 | 0.00 | 3.33 |
2729 | 5517 | 3.034635 | AGGACCTGCTTAGACTACATGG | 58.965 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
2730 | 5518 | 5.133941 | TCTAGGACCTGCTTAGACTACATG | 58.866 | 45.833 | 3.53 | 0.00 | 30.99 | 3.21 |
2756 | 5544 | 6.007936 | TCAAATTGGACCATAAGAACGTTG | 57.992 | 37.500 | 5.00 | 0.00 | 0.00 | 4.10 |
2757 | 5545 | 5.335661 | GCTCAAATTGGACCATAAGAACGTT | 60.336 | 40.000 | 0.00 | 0.00 | 0.00 | 3.99 |
2779 | 5570 | 7.653647 | TGAAACGGTATTTACAAAAATGAGCT | 58.346 | 30.769 | 0.00 | 0.00 | 36.02 | 4.09 |
2797 | 5588 | 5.068234 | TCAGTGTTATCTACCTGAAACGG | 57.932 | 43.478 | 0.00 | 0.00 | 33.74 | 4.44 |
2799 | 5590 | 5.874810 | TGCATCAGTGTTATCTACCTGAAAC | 59.125 | 40.000 | 0.00 | 0.00 | 37.50 | 2.78 |
2891 | 5713 | 8.912658 | CAGAACATTTCATCAGAAGAAACAATG | 58.087 | 33.333 | 2.94 | 1.63 | 37.76 | 2.82 |
2957 | 5786 | 9.555727 | AACTACAACAGAAACAATGTATACAGT | 57.444 | 29.630 | 11.91 | 5.77 | 0.00 | 3.55 |
2967 | 5796 | 5.359576 | AGGATTGCAACTACAACAGAAACAA | 59.640 | 36.000 | 0.00 | 0.00 | 31.03 | 2.83 |
2968 | 5797 | 4.887071 | AGGATTGCAACTACAACAGAAACA | 59.113 | 37.500 | 0.00 | 0.00 | 31.03 | 2.83 |
2969 | 5798 | 5.008613 | TCAGGATTGCAACTACAACAGAAAC | 59.991 | 40.000 | 0.00 | 0.00 | 31.03 | 2.78 |
2976 | 5828 | 7.182817 | AGTACTATCAGGATTGCAACTACAA | 57.817 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
3118 | 5971 | 9.377383 | GCATGCAATAATTATTGAAAATTCAGC | 57.623 | 29.630 | 32.75 | 21.19 | 44.40 | 4.26 |
3267 | 6123 | 6.486993 | GCAAGAACTAAATATAACTGGGAGGG | 59.513 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
3268 | 6124 | 6.486993 | GGCAAGAACTAAATATAACTGGGAGG | 59.513 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
3344 | 6211 | 3.054875 | CCACTTCCTCATGGAGTTCATCA | 60.055 | 47.826 | 0.00 | 0.00 | 44.24 | 3.07 |
3540 | 6407 | 2.161855 | TGAGCATAACAGCAACCCAAG | 58.838 | 47.619 | 0.00 | 0.00 | 36.85 | 3.61 |
3542 | 6409 | 1.825090 | CTGAGCATAACAGCAACCCA | 58.175 | 50.000 | 0.00 | 0.00 | 36.85 | 4.51 |
3549 | 6418 | 2.095532 | GCAACTGAGCTGAGCATAACAG | 59.904 | 50.000 | 7.39 | 12.53 | 0.00 | 3.16 |
3573 | 6442 | 3.943671 | TCCAAGAACCAAACCAGAAGA | 57.056 | 42.857 | 0.00 | 0.00 | 0.00 | 2.87 |
3643 | 6537 | 1.128692 | GTGCAACACGAGGAGCATTAC | 59.871 | 52.381 | 4.99 | 0.00 | 39.43 | 1.89 |
3663 | 6561 | 5.333645 | CCACTGAACTTTCTCATCGACAAAG | 60.334 | 44.000 | 0.00 | 0.00 | 33.98 | 2.77 |
3696 | 6594 | 4.740822 | ACCGGCCCAGCAATGTCC | 62.741 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
3852 | 6750 | 6.486993 | GCACTAGTAAAATTCCCCCTTATCTG | 59.513 | 42.308 | 0.00 | 0.00 | 0.00 | 2.90 |
3856 | 6754 | 4.079615 | GGGCACTAGTAAAATTCCCCCTTA | 60.080 | 45.833 | 0.00 | 0.00 | 0.00 | 2.69 |
3864 | 6762 | 5.777850 | AAAACGTGGGCACTAGTAAAATT | 57.222 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
3888 | 6786 | 9.483489 | TCTGTAACCCACTACATATAGAAGAAA | 57.517 | 33.333 | 0.00 | 0.00 | 31.50 | 2.52 |
3889 | 6787 | 9.483489 | TTCTGTAACCCACTACATATAGAAGAA | 57.517 | 33.333 | 0.00 | 0.00 | 31.50 | 2.52 |
3890 | 6788 | 9.656323 | ATTCTGTAACCCACTACATATAGAAGA | 57.344 | 33.333 | 0.00 | 0.00 | 31.80 | 2.87 |
3968 | 6866 | 8.992073 | CAAGCCTCTTGCATTAATTAAACTTTT | 58.008 | 29.630 | 1.21 | 0.00 | 44.83 | 2.27 |
3969 | 6867 | 7.118245 | GCAAGCCTCTTGCATTAATTAAACTTT | 59.882 | 33.333 | 22.26 | 0.00 | 44.34 | 2.66 |
4044 | 6945 | 1.627329 | TCCATCTTTGCTGAGCTCAGT | 59.373 | 47.619 | 37.25 | 19.15 | 45.45 | 3.41 |
4066 | 6967 | 2.828520 | CTGCTCCTTAGTTCAGTCTCCA | 59.171 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4106 | 7007 | 3.039202 | GCCGCACGCTAGCACAAAT | 62.039 | 57.895 | 16.45 | 0.00 | 0.00 | 2.32 |
4125 | 7026 | 7.042950 | ACGTTTTTAAAACATTTTAGGCTGGT | 58.957 | 30.769 | 18.81 | 3.20 | 34.45 | 4.00 |
4153 | 8597 | 7.316640 | TGCATTAATACTTTTAAATGCGTGGT | 58.683 | 30.769 | 12.59 | 0.00 | 36.67 | 4.16 |
4189 | 8633 | 9.654663 | GGGTATTTCTAAGATATCGTGCTAATT | 57.345 | 33.333 | 0.97 | 0.00 | 0.00 | 1.40 |
4190 | 8634 | 8.812972 | TGGGTATTTCTAAGATATCGTGCTAAT | 58.187 | 33.333 | 0.97 | 1.95 | 0.00 | 1.73 |
4191 | 8635 | 8.185506 | TGGGTATTTCTAAGATATCGTGCTAA | 57.814 | 34.615 | 0.97 | 0.00 | 0.00 | 3.09 |
4193 | 8637 | 6.665992 | TGGGTATTTCTAAGATATCGTGCT | 57.334 | 37.500 | 0.97 | 0.00 | 0.00 | 4.40 |
4510 | 8960 | 9.846248 | GCTTCTATTCACATTGAACATTTTACT | 57.154 | 29.630 | 0.00 | 0.00 | 39.45 | 2.24 |
4511 | 8961 | 9.846248 | AGCTTCTATTCACATTGAACATTTTAC | 57.154 | 29.630 | 0.00 | 0.00 | 39.45 | 2.01 |
4526 | 8976 | 3.307691 | CCTTGTGTGGGAGCTTCTATTCA | 60.308 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
4527 | 8977 | 3.274288 | CCTTGTGTGGGAGCTTCTATTC | 58.726 | 50.000 | 0.00 | 0.00 | 0.00 | 1.75 |
4528 | 8978 | 2.644798 | ACCTTGTGTGGGAGCTTCTATT | 59.355 | 45.455 | 0.00 | 0.00 | 0.00 | 1.73 |
4529 | 8979 | 2.026822 | CACCTTGTGTGGGAGCTTCTAT | 60.027 | 50.000 | 0.00 | 0.00 | 41.52 | 1.98 |
4530 | 8980 | 1.347707 | CACCTTGTGTGGGAGCTTCTA | 59.652 | 52.381 | 0.00 | 0.00 | 41.52 | 2.10 |
4531 | 8981 | 0.109342 | CACCTTGTGTGGGAGCTTCT | 59.891 | 55.000 | 0.00 | 0.00 | 41.52 | 2.85 |
4532 | 8982 | 2.633860 | CACCTTGTGTGGGAGCTTC | 58.366 | 57.895 | 0.00 | 0.00 | 41.52 | 3.86 |
4533 | 8983 | 4.907457 | CACCTTGTGTGGGAGCTT | 57.093 | 55.556 | 0.00 | 0.00 | 41.52 | 3.74 |
4540 | 8990 | 1.228245 | CCAGACCCCACCTTGTGTG | 60.228 | 63.158 | 0.00 | 0.00 | 45.01 | 3.82 |
4541 | 8991 | 2.460853 | CCCAGACCCCACCTTGTGT | 61.461 | 63.158 | 0.00 | 0.00 | 0.00 | 3.72 |
4542 | 8992 | 2.436109 | CCCAGACCCCACCTTGTG | 59.564 | 66.667 | 0.00 | 0.00 | 0.00 | 3.33 |
4543 | 8993 | 2.858974 | CCCCAGACCCCACCTTGT | 60.859 | 66.667 | 0.00 | 0.00 | 0.00 | 3.16 |
4544 | 8994 | 2.531685 | TCCCCAGACCCCACCTTG | 60.532 | 66.667 | 0.00 | 0.00 | 0.00 | 3.61 |
4545 | 8995 | 2.204151 | CTCCCCAGACCCCACCTT | 60.204 | 66.667 | 0.00 | 0.00 | 0.00 | 3.50 |
4546 | 8996 | 4.354943 | CCTCCCCAGACCCCACCT | 62.355 | 72.222 | 0.00 | 0.00 | 0.00 | 4.00 |
4548 | 8998 | 3.660092 | ATCCCTCCCCAGACCCCAC | 62.660 | 68.421 | 0.00 | 0.00 | 0.00 | 4.61 |
4549 | 8999 | 1.542093 | TAATCCCTCCCCAGACCCCA | 61.542 | 60.000 | 0.00 | 0.00 | 0.00 | 4.96 |
4550 | 9000 | 0.103876 | ATAATCCCTCCCCAGACCCC | 60.104 | 60.000 | 0.00 | 0.00 | 0.00 | 4.95 |
4551 | 9001 | 2.552367 | CTATAATCCCTCCCCAGACCC | 58.448 | 57.143 | 0.00 | 0.00 | 0.00 | 4.46 |
4552 | 9002 | 2.113777 | TCCTATAATCCCTCCCCAGACC | 59.886 | 54.545 | 0.00 | 0.00 | 0.00 | 3.85 |
4553 | 9003 | 3.562108 | TCCTATAATCCCTCCCCAGAC | 57.438 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
4554 | 9004 | 3.441054 | GGTTCCTATAATCCCTCCCCAGA | 60.441 | 52.174 | 0.00 | 0.00 | 0.00 | 3.86 |
4555 | 9005 | 2.913617 | GGTTCCTATAATCCCTCCCCAG | 59.086 | 54.545 | 0.00 | 0.00 | 0.00 | 4.45 |
4556 | 9006 | 2.531463 | AGGTTCCTATAATCCCTCCCCA | 59.469 | 50.000 | 0.00 | 0.00 | 0.00 | 4.96 |
4557 | 9007 | 3.293215 | AGGTTCCTATAATCCCTCCCC | 57.707 | 52.381 | 0.00 | 0.00 | 0.00 | 4.81 |
4558 | 9008 | 5.024785 | GACTAGGTTCCTATAATCCCTCCC | 58.975 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4559 | 9009 | 5.906254 | AGACTAGGTTCCTATAATCCCTCC | 58.094 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
4560 | 9010 | 6.295405 | GCAAGACTAGGTTCCTATAATCCCTC | 60.295 | 46.154 | 0.00 | 0.00 | 0.00 | 4.30 |
4561 | 9011 | 5.544562 | GCAAGACTAGGTTCCTATAATCCCT | 59.455 | 44.000 | 0.00 | 0.00 | 0.00 | 4.20 |
4562 | 9012 | 5.280062 | GGCAAGACTAGGTTCCTATAATCCC | 60.280 | 48.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4563 | 9013 | 5.280062 | GGGCAAGACTAGGTTCCTATAATCC | 60.280 | 48.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4564 | 9014 | 5.280062 | GGGGCAAGACTAGGTTCCTATAATC | 60.280 | 48.000 | 0.00 | 0.00 | 0.00 | 1.75 |
4565 | 9015 | 4.597940 | GGGGCAAGACTAGGTTCCTATAAT | 59.402 | 45.833 | 0.00 | 0.00 | 0.00 | 1.28 |
4566 | 9016 | 3.971971 | GGGGCAAGACTAGGTTCCTATAA | 59.028 | 47.826 | 0.00 | 0.00 | 0.00 | 0.98 |
4567 | 9017 | 3.209152 | AGGGGCAAGACTAGGTTCCTATA | 59.791 | 47.826 | 0.00 | 0.00 | 0.00 | 1.31 |
4568 | 9018 | 2.021936 | AGGGGCAAGACTAGGTTCCTAT | 60.022 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4569 | 9019 | 1.365028 | AGGGGCAAGACTAGGTTCCTA | 59.635 | 52.381 | 0.00 | 0.00 | 0.00 | 2.94 |
4570 | 9020 | 0.119358 | AGGGGCAAGACTAGGTTCCT | 59.881 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
4571 | 9021 | 0.253327 | CAGGGGCAAGACTAGGTTCC | 59.747 | 60.000 | 0.00 | 0.00 | 0.00 | 3.62 |
4572 | 9022 | 0.393132 | GCAGGGGCAAGACTAGGTTC | 60.393 | 60.000 | 0.00 | 0.00 | 40.72 | 3.62 |
4573 | 9023 | 1.685820 | GCAGGGGCAAGACTAGGTT | 59.314 | 57.895 | 0.00 | 0.00 | 40.72 | 3.50 |
4574 | 9024 | 3.404773 | GCAGGGGCAAGACTAGGT | 58.595 | 61.111 | 0.00 | 0.00 | 40.72 | 3.08 |
4590 | 9040 | 1.402456 | CCTCTCTGCATTGCACTTTGC | 60.402 | 52.381 | 7.38 | 8.20 | 45.29 | 3.68 |
4591 | 9041 | 1.402456 | GCCTCTCTGCATTGCACTTTG | 60.402 | 52.381 | 7.38 | 0.00 | 33.79 | 2.77 |
4592 | 9042 | 0.886563 | GCCTCTCTGCATTGCACTTT | 59.113 | 50.000 | 7.38 | 0.00 | 33.79 | 2.66 |
4593 | 9043 | 0.037877 | AGCCTCTCTGCATTGCACTT | 59.962 | 50.000 | 7.38 | 0.00 | 33.79 | 3.16 |
4594 | 9044 | 0.677098 | CAGCCTCTCTGCATTGCACT | 60.677 | 55.000 | 7.38 | 0.00 | 35.78 | 4.40 |
4595 | 9045 | 1.654954 | CCAGCCTCTCTGCATTGCAC | 61.655 | 60.000 | 7.38 | 0.00 | 41.50 | 4.57 |
4596 | 9046 | 1.378119 | CCAGCCTCTCTGCATTGCA | 60.378 | 57.895 | 11.50 | 11.50 | 41.50 | 4.08 |
4597 | 9047 | 0.964358 | AACCAGCCTCTCTGCATTGC | 60.964 | 55.000 | 0.46 | 0.46 | 41.50 | 3.56 |
4598 | 9048 | 1.093159 | GAACCAGCCTCTCTGCATTG | 58.907 | 55.000 | 0.00 | 0.00 | 41.50 | 2.82 |
4599 | 9049 | 0.392193 | CGAACCAGCCTCTCTGCATT | 60.392 | 55.000 | 0.00 | 0.00 | 41.50 | 3.56 |
4600 | 9050 | 1.220206 | CGAACCAGCCTCTCTGCAT | 59.780 | 57.895 | 0.00 | 0.00 | 41.50 | 3.96 |
4601 | 9051 | 1.471829 | TTCGAACCAGCCTCTCTGCA | 61.472 | 55.000 | 0.00 | 0.00 | 41.50 | 4.41 |
4602 | 9052 | 1.016653 | GTTCGAACCAGCCTCTCTGC | 61.017 | 60.000 | 17.68 | 0.00 | 41.50 | 4.26 |
4603 | 9053 | 3.129792 | GTTCGAACCAGCCTCTCTG | 57.870 | 57.895 | 17.68 | 0.00 | 42.49 | 3.35 |
4614 | 9064 | 0.685660 | AAGAGGTCCTGGGTTCGAAC | 59.314 | 55.000 | 20.14 | 20.14 | 0.00 | 3.95 |
4615 | 9065 | 0.685097 | CAAGAGGTCCTGGGTTCGAA | 59.315 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
4616 | 9066 | 1.192146 | CCAAGAGGTCCTGGGTTCGA | 61.192 | 60.000 | 0.00 | 0.00 | 30.82 | 3.71 |
4617 | 9067 | 1.296715 | CCAAGAGGTCCTGGGTTCG | 59.703 | 63.158 | 0.00 | 0.00 | 30.82 | 3.95 |
4618 | 9068 | 1.002011 | GCCAAGAGGTCCTGGGTTC | 60.002 | 63.158 | 0.00 | 0.00 | 38.32 | 3.62 |
4619 | 9069 | 1.774217 | TGCCAAGAGGTCCTGGGTT | 60.774 | 57.895 | 0.00 | 0.00 | 38.32 | 4.11 |
4620 | 9070 | 2.121963 | TGCCAAGAGGTCCTGGGT | 60.122 | 61.111 | 0.00 | 0.00 | 38.32 | 4.51 |
4621 | 9071 | 2.067932 | TTGTGCCAAGAGGTCCTGGG | 62.068 | 60.000 | 0.00 | 0.00 | 39.14 | 4.45 |
4622 | 9072 | 0.607489 | CTTGTGCCAAGAGGTCCTGG | 60.607 | 60.000 | 0.00 | 0.00 | 37.19 | 4.45 |
4623 | 9073 | 0.109342 | ACTTGTGCCAAGAGGTCCTG | 59.891 | 55.000 | 18.22 | 0.00 | 37.19 | 3.86 |
4624 | 9074 | 0.109342 | CACTTGTGCCAAGAGGTCCT | 59.891 | 55.000 | 18.22 | 0.00 | 37.19 | 3.85 |
4625 | 9075 | 0.890996 | CCACTTGTGCCAAGAGGTCC | 60.891 | 60.000 | 18.22 | 0.00 | 37.19 | 4.46 |
4626 | 9076 | 0.179018 | ACCACTTGTGCCAAGAGGTC | 60.179 | 55.000 | 22.21 | 0.00 | 36.70 | 3.85 |
4627 | 9077 | 0.258774 | AACCACTTGTGCCAAGAGGT | 59.741 | 50.000 | 22.21 | 22.21 | 41.87 | 3.85 |
4628 | 9078 | 0.954452 | GAACCACTTGTGCCAAGAGG | 59.046 | 55.000 | 21.27 | 21.27 | 34.71 | 3.69 |
4629 | 9079 | 0.588252 | CGAACCACTTGTGCCAAGAG | 59.412 | 55.000 | 18.22 | 11.85 | 0.00 | 2.85 |
4630 | 9080 | 0.179234 | TCGAACCACTTGTGCCAAGA | 59.821 | 50.000 | 18.22 | 0.00 | 0.00 | 3.02 |
4631 | 9081 | 1.021202 | TTCGAACCACTTGTGCCAAG | 58.979 | 50.000 | 11.87 | 11.87 | 0.00 | 3.61 |
4632 | 9082 | 0.736053 | GTTCGAACCACTTGTGCCAA | 59.264 | 50.000 | 17.68 | 0.00 | 0.00 | 4.52 |
4633 | 9083 | 2.399856 | GTTCGAACCACTTGTGCCA | 58.600 | 52.632 | 17.68 | 0.00 | 0.00 | 4.92 |
4649 | 9099 | 4.671831 | TGGATACACATTGAACATGGGTT | 58.328 | 39.130 | 0.00 | 0.00 | 46.17 | 4.11 |
4650 | 9100 | 4.314522 | TGGATACACATTGAACATGGGT | 57.685 | 40.909 | 0.00 | 0.00 | 46.17 | 4.51 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.