Multiple sequence alignment - TraesCS1A01G095700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G095700 chr1A 100.000 3023 0 0 1 3023 91327557 91330579 0.000000e+00 5583.0
1 TraesCS1A01G095700 chr1A 87.526 946 76 24 1598 2516 18219693 18218763 0.000000e+00 1055.0
2 TraesCS1A01G095700 chr7B 94.341 1608 80 5 1 1599 144751528 144753133 0.000000e+00 2455.0
3 TraesCS1A01G095700 chr7A 93.913 1610 85 5 1 1600 216505364 216503758 0.000000e+00 2418.0
4 TraesCS1A01G095700 chr7A 87.733 913 97 14 1612 2516 655669062 655668157 0.000000e+00 1051.0
5 TraesCS1A01G095700 chr7A 96.252 507 18 1 1598 2104 506269744 506269239 0.000000e+00 830.0
6 TraesCS1A01G095700 chr7A 96.226 53 2 0 1548 1600 635410055 635410003 1.490000e-13 87.9
7 TraesCS1A01G095700 chr6B 93.968 1608 71 7 1 1599 703546671 703548261 0.000000e+00 2409.0
8 TraesCS1A01G095700 chr5A 93.185 1350 81 5 1 1341 400393894 400395241 0.000000e+00 1973.0
9 TraesCS1A01G095700 chr5A 91.667 324 25 1 1279 1600 400395231 400395554 5.940000e-122 448.0
10 TraesCS1A01G095700 chr1B 89.165 1449 116 20 179 1597 32368102 32366665 0.000000e+00 1768.0
11 TraesCS1A01G095700 chr1B 88.577 1462 126 21 165 1599 411863007 411864454 0.000000e+00 1736.0
12 TraesCS1A01G095700 chr1B 87.104 915 90 19 1613 2515 424312938 424313836 0.000000e+00 1011.0
13 TraesCS1A01G095700 chr1B 89.024 164 16 2 1 163 32368507 32368345 5.110000e-48 202.0
14 TraesCS1A01G095700 chr1B 87.805 164 18 2 1 163 411862806 411862968 1.110000e-44 191.0
15 TraesCS1A01G095700 chr2D 87.794 1147 101 13 165 1295 94878380 94877257 0.000000e+00 1306.0
16 TraesCS1A01G095700 chr2D 87.591 959 71 24 1586 2516 515152562 515153500 0.000000e+00 1068.0
17 TraesCS1A01G095700 chr7D 87.314 1143 100 13 168 1295 138273450 138272338 0.000000e+00 1266.0
18 TraesCS1A01G095700 chr7D 90.354 508 48 1 2517 3023 266548490 266547983 0.000000e+00 665.0
19 TraesCS1A01G095700 chr7D 90.157 508 49 1 2517 3023 425087503 425086996 0.000000e+00 660.0
20 TraesCS1A01G095700 chr7D 91.150 226 19 1 1345 1570 138272340 138272116 3.790000e-79 305.0
21 TraesCS1A01G095700 chr7D 97.917 48 1 0 1553 1600 228831934 228831981 1.930000e-12 84.2
22 TraesCS1A01G095700 chr2B 88.080 948 81 19 165 1088 448034070 448035009 0.000000e+00 1096.0
23 TraesCS1A01G095700 chr1D 86.297 956 92 24 1586 2516 406742413 406743354 0.000000e+00 1003.0
24 TraesCS1A01G095700 chr1D 90.157 508 49 1 2517 3023 36703285 36703792 0.000000e+00 660.0
25 TraesCS1A01G095700 chr2A 86.516 927 92 15 1611 2515 49511871 49510956 0.000000e+00 989.0
26 TraesCS1A01G095700 chr5D 85.244 942 109 25 1591 2516 409412947 409413874 0.000000e+00 942.0
27 TraesCS1A01G095700 chr5D 90.354 508 47 2 2517 3023 223552780 223553286 0.000000e+00 665.0
28 TraesCS1A01G095700 chr5D 89.961 508 50 1 2517 3023 172271443 172271950 0.000000e+00 654.0
29 TraesCS1A01G095700 chr3A 85.197 939 106 23 1598 2519 134175137 134174215 0.000000e+00 933.0
30 TraesCS1A01G095700 chr3A 95.358 517 22 2 1586 2101 218872674 218873189 0.000000e+00 821.0
31 TraesCS1A01G095700 chr3A 90.157 508 49 1 2517 3023 628439843 628440350 0.000000e+00 660.0
32 TraesCS1A01G095700 chr3A 93.878 49 3 0 826 874 675157959 675158007 1.160000e-09 75.0
33 TraesCS1A01G095700 chr6D 84.483 928 107 31 1611 2516 441959361 441960273 0.000000e+00 881.0
34 TraesCS1A01G095700 chr6D 90.551 508 47 1 2517 3023 133943746 133944253 0.000000e+00 671.0
35 TraesCS1A01G095700 chr6D 90.675 504 44 2 2521 3023 268020558 268021059 0.000000e+00 667.0
36 TraesCS1A01G095700 chr6D 90.157 508 48 2 2517 3023 91434230 91434736 0.000000e+00 660.0
37 TraesCS1A01G095700 chr6D 89.764 508 51 1 2517 3023 127513784 127514291 0.000000e+00 649.0
38 TraesCS1A01G095700 chr6D 89.921 506 48 3 2517 3021 325302206 325302709 0.000000e+00 649.0
39 TraesCS1A01G095700 chr6D 89.567 508 52 1 2517 3023 200798404 200797897 0.000000e+00 643.0
40 TraesCS1A01G095700 chr6D 89.567 508 52 1 2517 3023 325078451 325077944 0.000000e+00 643.0
41 TraesCS1A01G095700 chr6D 89.349 507 54 0 2517 3023 315708197 315708703 3.290000e-179 638.0
42 TraesCS1A01G095700 chr6D 89.370 508 53 1 2517 3023 398814563 398814056 3.290000e-179 638.0
43 TraesCS1A01G095700 chr4A 96.223 503 19 0 1598 2100 578438954 578438452 0.000000e+00 824.0
44 TraesCS1A01G095700 chr4D 89.980 509 49 2 2517 3023 347450045 347450553 0.000000e+00 656.0
45 TraesCS1A01G095700 chr4D 89.961 508 50 1 2517 3023 40017864 40017357 0.000000e+00 654.0
46 TraesCS1A01G095700 chr4D 89.784 509 49 3 2517 3023 119101380 119101887 0.000000e+00 649.0
47 TraesCS1A01G095700 chr4D 89.764 508 51 1 2517 3023 280919767 280920274 0.000000e+00 649.0
48 TraesCS1A01G095700 chr4D 89.764 508 50 2 2517 3023 295647285 295646779 0.000000e+00 649.0
49 TraesCS1A01G095700 chr4D 97.917 48 1 0 1553 1600 179042827 179042780 1.930000e-12 84.2
50 TraesCS1A01G095700 chr3D 89.961 508 50 1 2517 3023 145744723 145745230 0.000000e+00 654.0
51 TraesCS1A01G095700 chrUn 88.955 507 55 1 2517 3022 350116930 350116424 2.560000e-175 625.0
52 TraesCS1A01G095700 chrUn 88.583 508 55 2 2517 3023 115578154 115578659 5.540000e-172 614.0
53 TraesCS1A01G095700 chrUn 88.538 506 56 2 2517 3021 42472316 42472820 1.990000e-171 612.0
54 TraesCS1A01G095700 chrUn 88.142 506 59 1 2517 3021 104972924 104972419 4.310000e-168 601.0
55 TraesCS1A01G095700 chrUn 87.623 509 61 1 2517 3023 191530521 191531029 9.330000e-165 590.0
56 TraesCS1A01G095700 chrUn 89.783 460 46 1 2517 2975 132273501 132273042 3.360000e-164 588.0
57 TraesCS1A01G095700 chrUn 87.205 508 64 1 2517 3023 57987226 57986719 7.270000e-161 577.0
58 TraesCS1A01G095700 chrUn 87.205 508 63 2 2517 3023 111791383 111790877 7.270000e-161 577.0
59 TraesCS1A01G095700 chrUn 87.205 508 64 1 2517 3023 441955451 441955958 7.270000e-161 577.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G095700 chr1A 91327557 91330579 3022 False 5583.0 5583 100.0000 1 3023 1 chr1A.!!$F1 3022
1 TraesCS1A01G095700 chr1A 18218763 18219693 930 True 1055.0 1055 87.5260 1598 2516 1 chr1A.!!$R1 918
2 TraesCS1A01G095700 chr7B 144751528 144753133 1605 False 2455.0 2455 94.3410 1 1599 1 chr7B.!!$F1 1598
3 TraesCS1A01G095700 chr7A 216503758 216505364 1606 True 2418.0 2418 93.9130 1 1600 1 chr7A.!!$R1 1599
4 TraesCS1A01G095700 chr7A 655668157 655669062 905 True 1051.0 1051 87.7330 1612 2516 1 chr7A.!!$R4 904
5 TraesCS1A01G095700 chr7A 506269239 506269744 505 True 830.0 830 96.2520 1598 2104 1 chr7A.!!$R2 506
6 TraesCS1A01G095700 chr6B 703546671 703548261 1590 False 2409.0 2409 93.9680 1 1599 1 chr6B.!!$F1 1598
7 TraesCS1A01G095700 chr5A 400393894 400395554 1660 False 1210.5 1973 92.4260 1 1600 2 chr5A.!!$F1 1599
8 TraesCS1A01G095700 chr1B 424312938 424313836 898 False 1011.0 1011 87.1040 1613 2515 1 chr1B.!!$F1 902
9 TraesCS1A01G095700 chr1B 32366665 32368507 1842 True 985.0 1768 89.0945 1 1597 2 chr1B.!!$R1 1596
10 TraesCS1A01G095700 chr1B 411862806 411864454 1648 False 963.5 1736 88.1910 1 1599 2 chr1B.!!$F2 1598
11 TraesCS1A01G095700 chr2D 94877257 94878380 1123 True 1306.0 1306 87.7940 165 1295 1 chr2D.!!$R1 1130
12 TraesCS1A01G095700 chr2D 515152562 515153500 938 False 1068.0 1068 87.5910 1586 2516 1 chr2D.!!$F1 930
13 TraesCS1A01G095700 chr7D 138272116 138273450 1334 True 785.5 1266 89.2320 168 1570 2 chr7D.!!$R3 1402
14 TraesCS1A01G095700 chr7D 266547983 266548490 507 True 665.0 665 90.3540 2517 3023 1 chr7D.!!$R1 506
15 TraesCS1A01G095700 chr7D 425086996 425087503 507 True 660.0 660 90.1570 2517 3023 1 chr7D.!!$R2 506
16 TraesCS1A01G095700 chr2B 448034070 448035009 939 False 1096.0 1096 88.0800 165 1088 1 chr2B.!!$F1 923
17 TraesCS1A01G095700 chr1D 406742413 406743354 941 False 1003.0 1003 86.2970 1586 2516 1 chr1D.!!$F2 930
18 TraesCS1A01G095700 chr1D 36703285 36703792 507 False 660.0 660 90.1570 2517 3023 1 chr1D.!!$F1 506
19 TraesCS1A01G095700 chr2A 49510956 49511871 915 True 989.0 989 86.5160 1611 2515 1 chr2A.!!$R1 904
20 TraesCS1A01G095700 chr5D 409412947 409413874 927 False 942.0 942 85.2440 1591 2516 1 chr5D.!!$F3 925
21 TraesCS1A01G095700 chr5D 223552780 223553286 506 False 665.0 665 90.3540 2517 3023 1 chr5D.!!$F2 506
22 TraesCS1A01G095700 chr5D 172271443 172271950 507 False 654.0 654 89.9610 2517 3023 1 chr5D.!!$F1 506
23 TraesCS1A01G095700 chr3A 134174215 134175137 922 True 933.0 933 85.1970 1598 2519 1 chr3A.!!$R1 921
24 TraesCS1A01G095700 chr3A 218872674 218873189 515 False 821.0 821 95.3580 1586 2101 1 chr3A.!!$F1 515
25 TraesCS1A01G095700 chr3A 628439843 628440350 507 False 660.0 660 90.1570 2517 3023 1 chr3A.!!$F2 506
26 TraesCS1A01G095700 chr6D 441959361 441960273 912 False 881.0 881 84.4830 1611 2516 1 chr6D.!!$F7 905
27 TraesCS1A01G095700 chr6D 133943746 133944253 507 False 671.0 671 90.5510 2517 3023 1 chr6D.!!$F3 506
28 TraesCS1A01G095700 chr6D 268020558 268021059 501 False 667.0 667 90.6750 2521 3023 1 chr6D.!!$F4 502
29 TraesCS1A01G095700 chr6D 91434230 91434736 506 False 660.0 660 90.1570 2517 3023 1 chr6D.!!$F1 506
30 TraesCS1A01G095700 chr6D 127513784 127514291 507 False 649.0 649 89.7640 2517 3023 1 chr6D.!!$F2 506
31 TraesCS1A01G095700 chr6D 325302206 325302709 503 False 649.0 649 89.9210 2517 3021 1 chr6D.!!$F6 504
32 TraesCS1A01G095700 chr6D 200797897 200798404 507 True 643.0 643 89.5670 2517 3023 1 chr6D.!!$R1 506
33 TraesCS1A01G095700 chr6D 325077944 325078451 507 True 643.0 643 89.5670 2517 3023 1 chr6D.!!$R2 506
34 TraesCS1A01G095700 chr6D 315708197 315708703 506 False 638.0 638 89.3490 2517 3023 1 chr6D.!!$F5 506
35 TraesCS1A01G095700 chr6D 398814056 398814563 507 True 638.0 638 89.3700 2517 3023 1 chr6D.!!$R3 506
36 TraesCS1A01G095700 chr4A 578438452 578438954 502 True 824.0 824 96.2230 1598 2100 1 chr4A.!!$R1 502
37 TraesCS1A01G095700 chr4D 347450045 347450553 508 False 656.0 656 89.9800 2517 3023 1 chr4D.!!$F3 506
38 TraesCS1A01G095700 chr4D 40017357 40017864 507 True 654.0 654 89.9610 2517 3023 1 chr4D.!!$R1 506
39 TraesCS1A01G095700 chr4D 119101380 119101887 507 False 649.0 649 89.7840 2517 3023 1 chr4D.!!$F1 506
40 TraesCS1A01G095700 chr4D 280919767 280920274 507 False 649.0 649 89.7640 2517 3023 1 chr4D.!!$F2 506
41 TraesCS1A01G095700 chr4D 295646779 295647285 506 True 649.0 649 89.7640 2517 3023 1 chr4D.!!$R3 506
42 TraesCS1A01G095700 chr3D 145744723 145745230 507 False 654.0 654 89.9610 2517 3023 1 chr3D.!!$F1 506
43 TraesCS1A01G095700 chrUn 350116424 350116930 506 True 625.0 625 88.9550 2517 3022 1 chrUn.!!$R5 505
44 TraesCS1A01G095700 chrUn 115578154 115578659 505 False 614.0 614 88.5830 2517 3023 1 chrUn.!!$F2 506
45 TraesCS1A01G095700 chrUn 42472316 42472820 504 False 612.0 612 88.5380 2517 3021 1 chrUn.!!$F1 504
46 TraesCS1A01G095700 chrUn 104972419 104972924 505 True 601.0 601 88.1420 2517 3021 1 chrUn.!!$R2 504
47 TraesCS1A01G095700 chrUn 191530521 191531029 508 False 590.0 590 87.6230 2517 3023 1 chrUn.!!$F3 506
48 TraesCS1A01G095700 chrUn 57986719 57987226 507 True 577.0 577 87.2050 2517 3023 1 chrUn.!!$R1 506
49 TraesCS1A01G095700 chrUn 111790877 111791383 506 True 577.0 577 87.2050 2517 3023 1 chrUn.!!$R3 506
50 TraesCS1A01G095700 chrUn 441955451 441955958 507 False 577.0 577 87.2050 2517 3023 1 chrUn.!!$F4 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 758 0.329596 GGCACCAATCCAAGAGACCT 59.670 55.0 0.0 0.0 0.0 3.85 F
1030 1307 0.243636 TGCTCGAAGTCAGATTGCGA 59.756 50.0 0.0 0.0 0.0 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1341 1677 0.373716 GCAGCCGAGAAATAACACGG 59.626 55.0 0.0 0.0 44.32 4.94 R
2537 2956 0.107410 ACGCCATCGAGCCCATTTTA 60.107 50.0 0.0 0.0 39.41 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 8.933653 AGGAAGAAAAGGATAAAAATGGTTCAA 58.066 29.630 0.00 0.00 0.00 2.69
133 135 9.744468 AACTTGATTAACAAAGTTGTATTGACC 57.256 29.630 13.77 0.00 41.31 4.02
271 501 0.881796 GCTTGTTGCTTGGGTAGGTC 59.118 55.000 0.00 0.00 38.95 3.85
357 587 1.073763 CCATGTGGAGGGAACAACTCA 59.926 52.381 0.00 0.00 36.70 3.41
519 758 0.329596 GGCACCAATCCAAGAGACCT 59.670 55.000 0.00 0.00 0.00 3.85
541 780 1.134098 ACCTACTTGTGCAGTTGCTGT 60.134 47.619 5.62 2.58 42.66 4.40
596 835 4.354087 AGAGTCCCCTGTACCAAGAAAAAT 59.646 41.667 0.00 0.00 0.00 1.82
812 1082 1.001764 TGCCACAAGATCCCAGCTG 60.002 57.895 6.78 6.78 0.00 4.24
898 1168 1.269012 CCGGAACCCTAGTGTGGTTA 58.731 55.000 0.00 0.00 45.93 2.85
942 1212 4.612412 TCGCCGGCTTGTTTCCGT 62.612 61.111 26.68 0.00 45.09 4.69
1030 1307 0.243636 TGCTCGAAGTCAGATTGCGA 59.756 50.000 0.00 0.00 0.00 5.10
1195 1478 1.114119 TGCAAGCCCAATTGTCTGCA 61.114 50.000 13.70 13.70 32.56 4.41
1253 1536 2.264794 GGTCGCCGTTGTCATCCT 59.735 61.111 0.00 0.00 0.00 3.24
1255 1538 1.080093 GTCGCCGTTGTCATCCTCA 60.080 57.895 0.00 0.00 0.00 3.86
1313 1597 2.642807 TGTGGGTTTCTTTAGGAGGAGG 59.357 50.000 0.00 0.00 0.00 4.30
1320 1608 2.008400 TCTTTAGGAGGAGGGAGGTCA 58.992 52.381 0.00 0.00 0.00 4.02
1323 1659 1.319947 TAGGAGGAGGGAGGTCATGT 58.680 55.000 0.00 0.00 0.00 3.21
1326 1662 1.343075 GGAGGAGGGAGGTCATGTGTA 60.343 57.143 0.00 0.00 0.00 2.90
1341 1677 5.009210 GTCATGTGTAGGTGAGGAGAGATAC 59.991 48.000 0.00 0.00 0.00 2.24
1698 2039 5.645929 TGCACTTTCCTATAAATTGCTCGAA 59.354 36.000 12.15 0.00 36.93 3.71
1717 2059 6.642707 TCGAAAGTAATTTGTTCACCCATT 57.357 33.333 0.00 0.00 0.00 3.16
2059 2465 6.170506 CACTACTTTACTGCATCACCCTTTA 58.829 40.000 0.00 0.00 0.00 1.85
2138 2546 4.527564 GTTGTGAGTTTGATAGCACACAC 58.472 43.478 2.03 0.00 40.57 3.82
2180 2588 4.926238 GGGAGTTGCATAATCTCATAGTCG 59.074 45.833 0.00 0.00 0.00 4.18
2234 2643 7.484641 GCAATAGCAATAAAACTGAACGATCAA 59.515 33.333 0.00 0.00 41.58 2.57
2249 2658 6.148645 TGAACGATCAAAATGCTAAGCTAACA 59.851 34.615 0.00 0.00 30.99 2.41
2283 2693 6.528321 TGTCCATCACATCATTCTCCTAATC 58.472 40.000 0.00 0.00 0.00 1.75
2292 2702 7.878644 CACATCATTCTCCTAATCATGTGATCT 59.121 37.037 8.50 0.00 41.34 2.75
2370 2783 2.701951 ACGAGCTAGTCTAGTAGAGGCT 59.298 50.000 17.02 17.02 44.48 4.58
2430 2844 9.702726 CACATGTATCAAGTTTTCGGTTAATAG 57.297 33.333 0.00 0.00 0.00 1.73
2445 2859 8.589335 TCGGTTAATAGAATTCTAGCATGAAC 57.411 34.615 19.51 13.08 0.00 3.18
2537 2956 3.679980 CGAACGTGTCCTTCAGAAATGAT 59.320 43.478 0.00 0.00 0.00 2.45
2685 3105 2.275134 TGACATGGCATGTGTGAAGT 57.725 45.000 35.82 11.12 45.03 3.01
2694 3114 1.395954 CATGTGTGAAGTCATCGCTGG 59.604 52.381 0.00 0.00 39.38 4.85
2812 3232 4.884257 GGCTTCCGCGGCGACATA 62.884 66.667 25.92 0.00 36.88 2.29
2830 3250 5.601662 GACATATTTCTCCAGGATCGACAA 58.398 41.667 0.00 0.00 0.00 3.18
2832 3252 5.363868 ACATATTTCTCCAGGATCGACAAGA 59.636 40.000 0.00 0.00 0.00 3.02
2897 3320 4.591321 ATGATAAACCTCTTCTTGGCCA 57.409 40.909 0.00 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 212 9.289782 CAAATGCTAGCCCTAGAAATATTAGTT 57.710 33.333 13.29 0.00 35.21 2.24
271 501 5.067153 TGGCTTTTCATATTATTCGGTGGTG 59.933 40.000 0.00 0.00 0.00 4.17
289 519 6.639563 ACAAAGTTTCAGTATTGTTGGCTTT 58.360 32.000 0.00 0.00 32.37 3.51
357 587 4.339247 CACACAAGAGTTCAGGGTTGAATT 59.661 41.667 0.00 0.00 44.62 2.17
519 758 1.140852 AGCAACTGCACAAGTAGGTCA 59.859 47.619 4.22 0.00 45.16 4.02
541 780 5.825593 ACTTCTTCTTCACCATGGTTCTA 57.174 39.130 16.84 0.12 0.00 2.10
626 865 7.218314 ACCTTCCCTCATCTTATTTCAGATT 57.782 36.000 0.00 0.00 30.50 2.40
791 1037 1.001764 CTGGGATCTTGTGGCAGCA 60.002 57.895 0.00 0.00 0.00 4.41
798 1044 0.463295 CGCATCAGCTGGGATCTTGT 60.463 55.000 15.13 0.00 40.13 3.16
812 1082 1.002366 GACACATCTCCACACGCATC 58.998 55.000 0.00 0.00 0.00 3.91
898 1168 2.906897 CAAGGTTGCAGCGGTGGT 60.907 61.111 17.54 0.00 0.00 4.16
1155 1434 4.862823 CCTCCCCCTCCTCGACCC 62.863 77.778 0.00 0.00 0.00 4.46
1253 1536 2.705410 CCCCTCCCTCTCCCATGA 59.295 66.667 0.00 0.00 0.00 3.07
1255 1538 4.888325 CGCCCCTCCCTCTCCCAT 62.888 72.222 0.00 0.00 0.00 4.00
1313 1597 1.482593 CCTCACCTACACATGACCTCC 59.517 57.143 0.00 0.00 0.00 4.30
1320 1608 4.475345 GGTATCTCTCCTCACCTACACAT 58.525 47.826 0.00 0.00 0.00 3.21
1323 1659 2.508716 ACGGTATCTCTCCTCACCTACA 59.491 50.000 0.00 0.00 0.00 2.74
1326 1662 1.285373 ACACGGTATCTCTCCTCACCT 59.715 52.381 0.00 0.00 0.00 4.00
1341 1677 0.373716 GCAGCCGAGAAATAACACGG 59.626 55.000 0.00 0.00 44.32 4.94
1401 1739 1.226128 GAAGCGCGCTGGTTGATTC 60.226 57.895 37.24 22.62 38.70 2.52
1687 2028 7.169140 GGTGAACAAATTACTTTCGAGCAATTT 59.831 33.333 0.00 0.00 32.29 1.82
2032 2436 5.425539 AGGGTGATGCAGTAAAGTAGTGTAT 59.574 40.000 0.00 0.00 37.18 2.29
2059 2465 2.949644 CGTTGGTTTTCCCTTGAAGAGT 59.050 45.455 0.00 0.00 39.73 3.24
2234 2643 4.860022 ACCCATCTGTTAGCTTAGCATTT 58.140 39.130 7.07 0.00 0.00 2.32
2283 2693 6.183360 TGTCATTTGATGAACGAGATCACATG 60.183 38.462 12.16 12.16 41.69 3.21
2292 2702 5.008514 ACATGTGTTGTCATTTGATGAACGA 59.991 36.000 0.00 0.00 41.69 3.85
2370 2783 3.134442 ACAAAACACCGTGTCCCTAGTAA 59.866 43.478 4.23 0.00 0.00 2.24
2537 2956 0.107410 ACGCCATCGAGCCCATTTTA 60.107 50.000 0.00 0.00 39.41 1.52
2694 3114 2.990735 CGACATCAAGCTCGTCGC 59.009 61.111 12.86 0.00 44.99 5.19
2812 3232 3.429547 CGTCTTGTCGATCCTGGAGAAAT 60.430 47.826 1.52 0.00 0.00 2.17
2853 3275 4.351938 CTCCGACGGACGTTGGCA 62.352 66.667 23.04 12.74 46.65 4.92
2992 3415 4.195416 CTCCCCTGAGTTTTTAGATGAGC 58.805 47.826 0.00 0.00 33.70 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.