Multiple sequence alignment - TraesCS1A01G095500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G095500 chr1A 100.000 5868 0 0 1 5868 91157566 91163433 0.000000e+00 10837.0
1 TraesCS1A01G095500 chr1A 89.615 520 48 3 5355 5868 460993544 460994063 0.000000e+00 656.0
2 TraesCS1A01G095500 chr1A 90.798 163 13 1 4608 4770 361357572 361357412 3.560000e-52 217.0
3 TraesCS1A01G095500 chr1A 92.157 153 11 1 4617 4769 155857856 155857705 1.280000e-51 215.0
4 TraesCS1A01G095500 chr1B 94.519 1788 89 2 2142 3927 156854344 156852564 0.000000e+00 2750.0
5 TraesCS1A01G095500 chr1B 90.506 1443 76 24 710 2115 156855758 156854340 0.000000e+00 1849.0
6 TraesCS1A01G095500 chr1B 92.123 584 24 9 4747 5319 156850361 156849789 0.000000e+00 804.0
7 TraesCS1A01G095500 chr1B 86.118 389 45 5 3926 4314 156852484 156852105 1.520000e-110 411.0
8 TraesCS1A01G095500 chr1B 94.931 217 9 1 4533 4749 156850656 156850442 7.280000e-89 339.0
9 TraesCS1A01G095500 chr1B 92.903 155 7 3 4614 4768 632020927 632021077 7.650000e-54 222.0
10 TraesCS1A01G095500 chr1B 90.964 166 10 2 4608 4770 390622454 390622291 9.900000e-53 219.0
11 TraesCS1A01G095500 chr1B 88.889 162 18 0 4310 4471 156850990 156850829 3.590000e-47 200.0
12 TraesCS1A01G095500 chr1D 94.460 1787 91 2 2142 3927 95865200 95866979 0.000000e+00 2745.0
13 TraesCS1A01G095500 chr1D 91.364 1459 64 29 682 2109 95863771 95865198 0.000000e+00 1940.0
14 TraesCS1A01G095500 chr1D 93.413 501 20 7 4747 5236 95869208 95869706 0.000000e+00 730.0
15 TraesCS1A01G095500 chr1D 88.493 365 38 3 3923 4286 95867056 95867417 6.980000e-119 438.0
16 TraesCS1A01G095500 chr1D 95.000 220 9 1 4530 4749 95868920 95869137 1.570000e-90 344.0
17 TraesCS1A01G095500 chr1D 91.558 154 13 0 4310 4463 95868608 95868761 4.610000e-51 213.0
18 TraesCS1A01G095500 chr1D 96.774 62 1 1 5258 5319 95869825 95869885 1.040000e-17 102.0
19 TraesCS1A01G095500 chr3D 82.500 880 130 17 2977 3854 223469871 223470728 0.000000e+00 750.0
20 TraesCS1A01G095500 chr3D 76.968 343 67 11 9 343 584444590 584444928 1.000000e-42 185.0
21 TraesCS1A01G095500 chr3B 82.273 880 132 19 2977 3854 317625111 317624254 0.000000e+00 739.0
22 TraesCS1A01G095500 chr3A 82.273 880 132 17 2977 3854 283110925 283110068 0.000000e+00 739.0
23 TraesCS1A01G095500 chr3A 89.788 519 48 2 5355 5868 512324845 512324327 0.000000e+00 660.0
24 TraesCS1A01G095500 chr3A 75.177 564 104 24 13 543 44436001 44435441 3.540000e-57 233.0
25 TraesCS1A01G095500 chr3A 88.889 63 7 0 585 647 153350061 153349999 1.750000e-10 78.7
26 TraesCS1A01G095500 chr7A 89.981 519 47 2 5355 5868 688879119 688879637 0.000000e+00 665.0
27 TraesCS1A01G095500 chr7A 73.286 569 150 2 2976 3543 81500118 81499551 2.140000e-49 207.0
28 TraesCS1A01G095500 chr7D 89.788 519 46 3 5355 5868 510437255 510437771 0.000000e+00 658.0
29 TraesCS1A01G095500 chr7D 76.132 574 105 20 4 548 595869708 595869138 7.490000e-69 272.0
30 TraesCS1A01G095500 chr7D 92.308 156 10 1 4613 4768 34756865 34757018 2.750000e-53 220.0
31 TraesCS1A01G095500 chr7D 73.462 569 149 2 2976 3543 78040433 78039866 4.610000e-51 213.0
32 TraesCS1A01G095500 chr7D 73.843 432 85 17 128 543 474087432 474087013 4.740000e-31 147.0
33 TraesCS1A01G095500 chr7D 88.889 63 7 0 585 647 27819502 27819564 1.750000e-10 78.7
34 TraesCS1A01G095500 chr2D 76.357 571 103 25 1 543 82094421 82093855 1.610000e-70 278.0
35 TraesCS1A01G095500 chr2D 81.301 123 22 1 428 549 7700598 7700476 1.350000e-16 99.0
36 TraesCS1A01G095500 chr2D 89.231 65 7 0 587 651 544937150 544937214 1.360000e-11 82.4
37 TraesCS1A01G095500 chr2D 88.889 63 7 0 585 647 584873646 584873584 1.750000e-10 78.7
38 TraesCS1A01G095500 chr6D 76.224 572 99 18 1 543 156427531 156426968 9.690000e-68 268.0
39 TraesCS1A01G095500 chr4D 90.854 164 12 3 4609 4769 8783483 8783320 3.560000e-52 217.0
40 TraesCS1A01G095500 chr4D 91.195 159 13 1 4613 4771 74079505 74079348 1.280000e-51 215.0
41 TraesCS1A01G095500 chr4D 90.000 60 5 1 601 659 380803886 380803827 6.310000e-10 76.8
42 TraesCS1A01G095500 chr7B 73.415 568 151 0 2976 3543 25324036 25323469 4.610000e-51 213.0
43 TraesCS1A01G095500 chr7B 77.273 330 63 11 9 328 666419026 666418699 3.610000e-42 183.0
44 TraesCS1A01G095500 chr7B 74.433 485 94 17 87 543 43300652 43300170 1.300000e-41 182.0
45 TraesCS1A01G095500 chr7B 72.477 545 113 23 20 543 498187055 498186527 2.200000e-29 141.0
46 TraesCS1A01G095500 chr5B 73.739 575 108 32 6 543 534304273 534304841 1.000000e-42 185.0
47 TraesCS1A01G095500 chr5B 73.221 534 112 17 38 543 21530907 21530377 1.310000e-36 165.0
48 TraesCS1A01G095500 chr4A 75.057 437 77 17 95 503 550171990 550171558 2.170000e-39 174.0
49 TraesCS1A01G095500 chr6B 90.476 63 5 1 587 648 417346026 417345964 1.360000e-11 82.4
50 TraesCS1A01G095500 chr6B 92.727 55 4 0 596 650 550375755 550375701 4.870000e-11 80.5
51 TraesCS1A01G095500 chr2B 88.889 63 7 0 585 647 183513515 183513577 1.750000e-10 78.7
52 TraesCS1A01G095500 chrUn 88.889 63 5 2 596 656 1181977 1181915 6.310000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G095500 chr1A 91157566 91163433 5867 False 10837.000000 10837 100.000000 1 5868 1 chr1A.!!$F1 5867
1 TraesCS1A01G095500 chr1A 460993544 460994063 519 False 656.000000 656 89.615000 5355 5868 1 chr1A.!!$F2 513
2 TraesCS1A01G095500 chr1B 156849789 156855758 5969 True 1058.833333 2750 91.181000 710 5319 6 chr1B.!!$R2 4609
3 TraesCS1A01G095500 chr1D 95863771 95869885 6114 False 930.285714 2745 93.008857 682 5319 7 chr1D.!!$F1 4637
4 TraesCS1A01G095500 chr3D 223469871 223470728 857 False 750.000000 750 82.500000 2977 3854 1 chr3D.!!$F1 877
5 TraesCS1A01G095500 chr3B 317624254 317625111 857 True 739.000000 739 82.273000 2977 3854 1 chr3B.!!$R1 877
6 TraesCS1A01G095500 chr3A 283110068 283110925 857 True 739.000000 739 82.273000 2977 3854 1 chr3A.!!$R3 877
7 TraesCS1A01G095500 chr3A 512324327 512324845 518 True 660.000000 660 89.788000 5355 5868 1 chr3A.!!$R4 513
8 TraesCS1A01G095500 chr3A 44435441 44436001 560 True 233.000000 233 75.177000 13 543 1 chr3A.!!$R1 530
9 TraesCS1A01G095500 chr7A 688879119 688879637 518 False 665.000000 665 89.981000 5355 5868 1 chr7A.!!$F1 513
10 TraesCS1A01G095500 chr7A 81499551 81500118 567 True 207.000000 207 73.286000 2976 3543 1 chr7A.!!$R1 567
11 TraesCS1A01G095500 chr7D 510437255 510437771 516 False 658.000000 658 89.788000 5355 5868 1 chr7D.!!$F3 513
12 TraesCS1A01G095500 chr7D 595869138 595869708 570 True 272.000000 272 76.132000 4 548 1 chr7D.!!$R3 544
13 TraesCS1A01G095500 chr7D 78039866 78040433 567 True 213.000000 213 73.462000 2976 3543 1 chr7D.!!$R1 567
14 TraesCS1A01G095500 chr2D 82093855 82094421 566 True 278.000000 278 76.357000 1 543 1 chr2D.!!$R2 542
15 TraesCS1A01G095500 chr6D 156426968 156427531 563 True 268.000000 268 76.224000 1 543 1 chr6D.!!$R1 542
16 TraesCS1A01G095500 chr7B 25323469 25324036 567 True 213.000000 213 73.415000 2976 3543 1 chr7B.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
653 689 0.033796 AACGGAGGGAGTATGACCGA 60.034 55.0 0.00 0.0 45.31 4.69 F
659 695 0.106116 GGGAGTATGACCGAGGGAGT 60.106 60.0 0.00 0.0 0.00 3.85 F
2118 2193 0.033011 TCACTCTCCTCCACCCTAGC 60.033 60.0 0.00 0.0 0.00 3.42 F
2120 2195 0.032615 ACTCTCCTCCACCCTAGCAG 60.033 60.0 0.00 0.0 0.00 4.24 F
2132 2207 0.108207 CCTAGCAGGGCTTCTGGATG 59.892 60.0 0.00 0.0 43.54 3.51 F
2139 2214 0.179009 GGGCTTCTGGATGCTGCATA 60.179 55.0 16.23 0.0 0.00 3.14 F
4099 4257 0.985760 ACAGTGGGCCGGTACATTAA 59.014 50.0 1.90 0.0 0.00 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1786 1854 0.037303 CTTGACCATCCACCACAGCT 59.963 55.000 0.00 0.0 0.0 4.24 R
2120 2195 0.179009 TATGCAGCATCCAGAAGCCC 60.179 55.000 12.38 0.0 0.0 5.19 R
4000 4158 0.395586 ACCAGCAAACCACAGCAGAA 60.396 50.000 0.00 0.0 0.0 3.02 R
4030 4188 2.225019 GCGGATGACTGGATTATGCAAG 59.775 50.000 0.00 0.0 0.0 4.01 R
4114 4272 2.679837 AGCAACAACGAGATGGCATTAG 59.320 45.455 0.00 0.0 0.0 1.73 R
4128 4286 5.181811 CCTCATGAACATACAGAAGCAACAA 59.818 40.000 0.00 0.0 0.0 2.83 R
5567 7210 0.248949 GGAAGCGGGTGATACGACTC 60.249 60.000 0.00 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.302511 GTTCCTTTGCCTCTCGCCA 60.303 57.895 0.00 0.00 36.24 5.69
56 57 2.590575 CCAGCACCGTCGTTGGTT 60.591 61.111 0.00 0.00 41.38 3.67
58 59 1.885388 CAGCACCGTCGTTGGTTCA 60.885 57.895 0.00 0.00 41.38 3.18
73 74 0.883833 GTTCACCTCGTCTCCGGTAA 59.116 55.000 0.00 0.00 33.95 2.85
74 75 1.475682 GTTCACCTCGTCTCCGGTAAT 59.524 52.381 0.00 0.00 33.95 1.89
83 84 2.317973 GTCTCCGGTAATCTTAGGGCT 58.682 52.381 0.00 0.00 0.00 5.19
111 113 0.405585 CTGTGGATCCCAACCCTTGT 59.594 55.000 9.90 0.00 34.18 3.16
123 125 2.928396 CCTTGTCGGTGGGAGGGT 60.928 66.667 0.00 0.00 0.00 4.34
126 128 1.764571 CTTGTCGGTGGGAGGGTTCA 61.765 60.000 0.00 0.00 0.00 3.18
163 167 6.147985 TGTTTTTGAGTTTTGTTAGGGTTTGC 59.852 34.615 0.00 0.00 0.00 3.68
170 179 2.623878 TGTTAGGGTTTGCGTTCAGA 57.376 45.000 0.00 0.00 0.00 3.27
193 203 4.176752 GAGATGGCGGTGACCCCC 62.177 72.222 0.00 0.00 0.00 5.40
196 206 3.346734 ATGGCGGTGACCCCCAAT 61.347 61.111 12.72 0.00 35.50 3.16
216 226 6.779049 CCCAATGATGAAATAAGATTCTCCCA 59.221 38.462 0.00 0.00 0.00 4.37
217 227 7.453752 CCCAATGATGAAATAAGATTCTCCCAT 59.546 37.037 0.00 0.00 0.00 4.00
218 228 8.867097 CCAATGATGAAATAAGATTCTCCCATT 58.133 33.333 0.00 0.00 30.88 3.16
230 241 2.271777 TCTCCCATTTAGTCCCCGTTT 58.728 47.619 0.00 0.00 0.00 3.60
238 249 0.251564 TAGTCCCCGTTTCGGTGGTA 60.252 55.000 7.40 0.00 46.80 3.25
242 253 0.321830 CCCCGTTTCGGTGGTACATT 60.322 55.000 7.40 0.00 46.80 2.71
250 261 3.188159 TCGGTGGTACATTTAGCATCC 57.812 47.619 0.00 0.00 44.52 3.51
253 264 3.560068 CGGTGGTACATTTAGCATCCTTC 59.440 47.826 0.00 0.00 44.52 3.46
264 275 4.015406 ATCCTTCGTGGGCGTGCA 62.015 61.111 0.00 0.00 39.49 4.57
272 283 1.894756 GTGGGCGTGCAAAGGTGTA 60.895 57.895 0.00 0.00 0.00 2.90
276 287 1.165270 GGCGTGCAAAGGTGTATCTT 58.835 50.000 0.00 0.00 0.00 2.40
278 289 1.804151 GCGTGCAAAGGTGTATCTTCA 59.196 47.619 0.00 0.00 0.00 3.02
316 327 3.673902 TGAATTTGCTCGGATCTGTTCA 58.326 40.909 0.42 0.30 0.00 3.18
329 340 5.592054 GGATCTGTTCATCGTTCATCTACA 58.408 41.667 0.00 0.00 0.00 2.74
338 349 4.428615 TCGTTCATCTACATTCGTGTGA 57.571 40.909 0.00 0.00 0.00 3.58
339 350 4.993905 TCGTTCATCTACATTCGTGTGAT 58.006 39.130 0.00 0.00 0.00 3.06
340 351 5.034797 TCGTTCATCTACATTCGTGTGATC 58.965 41.667 0.00 0.00 0.00 2.92
342 353 5.516696 CGTTCATCTACATTCGTGTGATCTT 59.483 40.000 0.00 0.00 0.00 2.40
343 354 6.035005 CGTTCATCTACATTCGTGTGATCTTT 59.965 38.462 0.00 0.00 0.00 2.52
344 355 7.394872 GTTCATCTACATTCGTGTGATCTTTC 58.605 38.462 0.00 0.00 0.00 2.62
345 356 6.042777 TCATCTACATTCGTGTGATCTTTCC 58.957 40.000 0.00 0.00 0.00 3.13
352 382 4.866508 TCGTGTGATCTTTCCACTACTT 57.133 40.909 0.00 0.00 35.66 2.24
378 411 4.680237 CGGCGGGTGCTGTTCTGA 62.680 66.667 0.00 0.00 42.79 3.27
388 421 1.580845 GCTGTTCTGATGCGCTGGTT 61.581 55.000 9.73 0.00 0.00 3.67
389 422 0.877071 CTGTTCTGATGCGCTGGTTT 59.123 50.000 9.73 0.00 0.00 3.27
397 430 1.042559 ATGCGCTGGTTTTATGGGGG 61.043 55.000 9.73 0.00 0.00 5.40
401 434 1.275666 GCTGGTTTTATGGGGGCTTT 58.724 50.000 0.00 0.00 0.00 3.51
402 435 1.628340 GCTGGTTTTATGGGGGCTTTT 59.372 47.619 0.00 0.00 0.00 2.27
403 436 2.039746 GCTGGTTTTATGGGGGCTTTTT 59.960 45.455 0.00 0.00 0.00 1.94
405 438 4.080582 GCTGGTTTTATGGGGGCTTTTTAT 60.081 41.667 0.00 0.00 0.00 1.40
423 457 5.414789 TTTATGAGGACTTTCCGATGTCA 57.585 39.130 0.00 0.00 42.75 3.58
463 497 3.282838 TCCAGTGAGGGAGGGACA 58.717 61.111 0.00 0.00 38.24 4.02
489 524 4.695560 GGCACGCCTTCAACTAGT 57.304 55.556 0.00 0.00 0.00 2.57
503 539 6.260050 CCTTCAACTAGTTTCAGTGCTTGTAA 59.740 38.462 5.07 0.00 0.00 2.41
506 542 6.989759 TCAACTAGTTTCAGTGCTTGTAATCA 59.010 34.615 5.07 0.00 0.00 2.57
509 545 7.161404 ACTAGTTTCAGTGCTTGTAATCATCA 58.839 34.615 0.00 0.00 0.00 3.07
514 550 6.530019 TCAGTGCTTGTAATCATCACTAGA 57.470 37.500 0.00 0.00 36.63 2.43
516 552 8.237811 TCAGTGCTTGTAATCATCACTAGATA 57.762 34.615 0.00 0.00 36.63 1.98
550 586 7.843490 TCTTGATGTAATTTTTACTCCTCCG 57.157 36.000 0.00 0.00 0.00 4.63
551 587 7.391620 TCTTGATGTAATTTTTACTCCTCCGT 58.608 34.615 0.00 0.00 0.00 4.69
552 588 7.881232 TCTTGATGTAATTTTTACTCCTCCGTT 59.119 33.333 0.00 0.00 0.00 4.44
553 589 7.605410 TGATGTAATTTTTACTCCTCCGTTC 57.395 36.000 0.00 0.00 0.00 3.95
554 590 7.162761 TGATGTAATTTTTACTCCTCCGTTCA 58.837 34.615 0.00 0.00 0.00 3.18
555 591 7.662258 TGATGTAATTTTTACTCCTCCGTTCAA 59.338 33.333 0.00 0.00 0.00 2.69
556 592 7.989416 TGTAATTTTTACTCCTCCGTTCAAT 57.011 32.000 0.00 0.00 0.00 2.57
557 593 9.675464 ATGTAATTTTTACTCCTCCGTTCAATA 57.325 29.630 0.00 0.00 0.00 1.90
558 594 9.504708 TGTAATTTTTACTCCTCCGTTCAATAA 57.495 29.630 0.00 0.00 0.00 1.40
568 604 9.529823 ACTCCTCCGTTCAATAATATAGTATCA 57.470 33.333 0.00 0.00 0.00 2.15
570 606 9.749340 TCCTCCGTTCAATAATATAGTATCAGA 57.251 33.333 0.00 0.00 0.00 3.27
591 627 8.922058 TCAGAAAACGTCTTACAATATACTCC 57.078 34.615 0.00 0.00 32.70 3.85
592 628 7.977853 TCAGAAAACGTCTTACAATATACTCCC 59.022 37.037 0.00 0.00 32.70 4.30
593 629 7.980099 CAGAAAACGTCTTACAATATACTCCCT 59.020 37.037 0.00 0.00 32.70 4.20
594 630 8.196103 AGAAAACGTCTTACAATATACTCCCTC 58.804 37.037 0.00 0.00 29.66 4.30
595 631 7.657023 AAACGTCTTACAATATACTCCCTCT 57.343 36.000 0.00 0.00 0.00 3.69
596 632 6.636562 ACGTCTTACAATATACTCCCTCTG 57.363 41.667 0.00 0.00 0.00 3.35
597 633 6.127793 ACGTCTTACAATATACTCCCTCTGT 58.872 40.000 0.00 0.00 0.00 3.41
598 634 6.606395 ACGTCTTACAATATACTCCCTCTGTT 59.394 38.462 0.00 0.00 0.00 3.16
599 635 7.140048 CGTCTTACAATATACTCCCTCTGTTC 58.860 42.308 0.00 0.00 0.00 3.18
600 636 7.013464 CGTCTTACAATATACTCCCTCTGTTCT 59.987 40.741 0.00 0.00 0.00 3.01
601 637 9.352191 GTCTTACAATATACTCCCTCTGTTCTA 57.648 37.037 0.00 0.00 0.00 2.10
602 638 9.931698 TCTTACAATATACTCCCTCTGTTCTAA 57.068 33.333 0.00 0.00 0.00 2.10
608 644 9.853177 AATATACTCCCTCTGTTCTAAAATTGG 57.147 33.333 0.00 0.00 0.00 3.16
609 645 5.584551 ACTCCCTCTGTTCTAAAATTGGT 57.415 39.130 0.00 0.00 0.00 3.67
610 646 6.697641 ACTCCCTCTGTTCTAAAATTGGTA 57.302 37.500 0.00 0.00 0.00 3.25
611 647 6.473758 ACTCCCTCTGTTCTAAAATTGGTAC 58.526 40.000 0.00 0.00 0.00 3.34
612 648 6.043938 ACTCCCTCTGTTCTAAAATTGGTACA 59.956 38.462 0.00 0.00 0.00 2.90
613 649 7.027874 TCCCTCTGTTCTAAAATTGGTACAT 57.972 36.000 0.00 0.00 39.30 2.29
614 650 8.153221 TCCCTCTGTTCTAAAATTGGTACATA 57.847 34.615 0.00 0.00 39.30 2.29
615 651 8.265055 TCCCTCTGTTCTAAAATTGGTACATAG 58.735 37.037 0.00 0.00 39.30 2.23
616 652 8.047310 CCCTCTGTTCTAAAATTGGTACATAGT 58.953 37.037 0.00 0.00 39.30 2.12
617 653 9.449719 CCTCTGTTCTAAAATTGGTACATAGTT 57.550 33.333 0.00 0.00 39.30 2.24
621 657 9.787435 TGTTCTAAAATTGGTACATAGTTGAGT 57.213 29.630 0.00 0.00 39.30 3.41
632 668 9.599866 TGGTACATAGTTGAGTCATCTATTTTG 57.400 33.333 17.50 12.46 27.74 2.44
633 669 9.817809 GGTACATAGTTGAGTCATCTATTTTGA 57.182 33.333 17.50 4.76 27.74 2.69
637 673 9.694520 CATAGTTGAGTCATCTATTTTGAAACG 57.305 33.333 17.50 4.53 27.74 3.60
638 674 7.133891 AGTTGAGTCATCTATTTTGAAACGG 57.866 36.000 1.70 0.00 0.00 4.44
639 675 6.934645 AGTTGAGTCATCTATTTTGAAACGGA 59.065 34.615 1.70 0.00 0.00 4.69
640 676 6.968131 TGAGTCATCTATTTTGAAACGGAG 57.032 37.500 0.00 0.00 0.00 4.63
641 677 5.874810 TGAGTCATCTATTTTGAAACGGAGG 59.125 40.000 0.00 0.00 0.00 4.30
642 678 5.186198 AGTCATCTATTTTGAAACGGAGGG 58.814 41.667 0.00 0.00 0.00 4.30
643 679 5.045869 AGTCATCTATTTTGAAACGGAGGGA 60.046 40.000 0.00 0.00 0.00 4.20
644 680 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
645 681 4.903045 TCTATTTTGAAACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
646 682 6.155565 TCATCTATTTTGAAACGGAGGGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
647 683 6.555463 TCTATTTTGAAACGGAGGGAGTAT 57.445 37.500 0.00 0.00 0.00 2.12
648 684 6.346096 TCTATTTTGAAACGGAGGGAGTATG 58.654 40.000 0.00 0.00 0.00 2.39
649 685 4.627284 TTTTGAAACGGAGGGAGTATGA 57.373 40.909 0.00 0.00 0.00 2.15
650 686 3.604875 TTGAAACGGAGGGAGTATGAC 57.395 47.619 0.00 0.00 0.00 3.06
651 687 1.829222 TGAAACGGAGGGAGTATGACC 59.171 52.381 0.00 0.00 0.00 4.02
653 689 0.033796 AACGGAGGGAGTATGACCGA 60.034 55.000 0.00 0.00 45.31 4.69
654 690 0.465824 ACGGAGGGAGTATGACCGAG 60.466 60.000 0.00 0.00 45.31 4.63
655 691 1.173444 CGGAGGGAGTATGACCGAGG 61.173 65.000 0.00 0.00 45.31 4.63
656 692 0.828343 GGAGGGAGTATGACCGAGGG 60.828 65.000 0.00 0.00 0.00 4.30
657 693 0.185416 GAGGGAGTATGACCGAGGGA 59.815 60.000 0.00 0.00 0.00 4.20
658 694 0.186386 AGGGAGTATGACCGAGGGAG 59.814 60.000 0.00 0.00 0.00 4.30
659 695 0.106116 GGGAGTATGACCGAGGGAGT 60.106 60.000 0.00 0.00 0.00 3.85
660 696 1.144503 GGGAGTATGACCGAGGGAGTA 59.855 57.143 0.00 0.00 0.00 2.59
661 697 2.225066 GGGAGTATGACCGAGGGAGTAT 60.225 54.545 0.00 0.00 0.00 2.12
662 698 3.498334 GGAGTATGACCGAGGGAGTATT 58.502 50.000 0.00 0.00 0.00 1.89
663 699 3.256136 GGAGTATGACCGAGGGAGTATTG 59.744 52.174 0.00 0.00 0.00 1.90
664 700 3.890147 GAGTATGACCGAGGGAGTATTGT 59.110 47.826 0.00 0.00 0.00 2.71
665 701 4.287552 AGTATGACCGAGGGAGTATTGTT 58.712 43.478 0.00 0.00 0.00 2.83
666 702 4.715297 AGTATGACCGAGGGAGTATTGTTT 59.285 41.667 0.00 0.00 0.00 2.83
667 703 3.604875 TGACCGAGGGAGTATTGTTTC 57.395 47.619 0.00 0.00 0.00 2.78
668 704 3.170717 TGACCGAGGGAGTATTGTTTCT 58.829 45.455 0.00 0.00 0.00 2.52
669 705 3.581332 TGACCGAGGGAGTATTGTTTCTT 59.419 43.478 0.00 0.00 0.00 2.52
670 706 3.933332 GACCGAGGGAGTATTGTTTCTTG 59.067 47.826 0.00 0.00 0.00 3.02
671 707 3.326880 ACCGAGGGAGTATTGTTTCTTGT 59.673 43.478 0.00 0.00 0.00 3.16
672 708 3.684788 CCGAGGGAGTATTGTTTCTTGTG 59.315 47.826 0.00 0.00 0.00 3.33
673 709 4.315803 CGAGGGAGTATTGTTTCTTGTGT 58.684 43.478 0.00 0.00 0.00 3.72
674 710 4.755123 CGAGGGAGTATTGTTTCTTGTGTT 59.245 41.667 0.00 0.00 0.00 3.32
675 711 5.107065 CGAGGGAGTATTGTTTCTTGTGTTC 60.107 44.000 0.00 0.00 0.00 3.18
676 712 5.690865 AGGGAGTATTGTTTCTTGTGTTCA 58.309 37.500 0.00 0.00 0.00 3.18
677 713 6.306987 AGGGAGTATTGTTTCTTGTGTTCAT 58.693 36.000 0.00 0.00 0.00 2.57
678 714 6.777580 AGGGAGTATTGTTTCTTGTGTTCATT 59.222 34.615 0.00 0.00 0.00 2.57
679 715 6.863126 GGGAGTATTGTTTCTTGTGTTCATTG 59.137 38.462 0.00 0.00 0.00 2.82
680 716 7.425606 GGAGTATTGTTTCTTGTGTTCATTGT 58.574 34.615 0.00 0.00 0.00 2.71
743 780 4.681978 ACCGACGAGGGCAACAGC 62.682 66.667 0.00 0.00 46.96 4.40
846 886 0.653636 TTCACGCGTCTTTGAACACC 59.346 50.000 9.86 0.00 0.00 4.16
966 1014 2.530497 CGTCGCCGGAGAGAGAGAG 61.530 68.421 8.65 0.00 0.00 3.20
967 1015 1.153329 GTCGCCGGAGAGAGAGAGA 60.153 63.158 8.65 0.00 0.00 3.10
1164 1212 1.606601 GGTTTTCCTGTCCCAGCCC 60.607 63.158 0.00 0.00 36.94 5.19
1220 1268 6.482835 TCTGCGGTGATTATTAAACAAATCG 58.517 36.000 0.00 0.00 35.32 3.34
1252 1300 6.404623 GCTTTGTTTTTGCTCCTTTCCAAATT 60.405 34.615 0.00 0.00 31.71 1.82
1253 1301 7.201688 GCTTTGTTTTTGCTCCTTTCCAAATTA 60.202 33.333 0.00 0.00 31.71 1.40
1254 1302 7.546778 TTGTTTTTGCTCCTTTCCAAATTAC 57.453 32.000 0.00 0.00 31.71 1.89
1255 1303 6.883744 TGTTTTTGCTCCTTTCCAAATTACT 58.116 32.000 0.00 0.00 31.71 2.24
1256 1304 8.012957 TGTTTTTGCTCCTTTCCAAATTACTA 57.987 30.769 0.00 0.00 31.71 1.82
1257 1305 8.141268 TGTTTTTGCTCCTTTCCAAATTACTAG 58.859 33.333 0.00 0.00 31.71 2.57
1352 1403 5.807909 TGTGGAGAATCTGTGAATCATGAA 58.192 37.500 0.00 0.00 33.73 2.57
1375 1426 1.544246 GATTTGGTACACCTTGGTGGC 59.456 52.381 21.98 14.31 39.29 5.01
1378 1429 1.670083 GGTACACCTTGGTGGCGTC 60.670 63.158 21.98 9.94 40.22 5.19
1411 1462 4.526438 AGGGATAAGAAAAGGATGGGTG 57.474 45.455 0.00 0.00 0.00 4.61
1412 1463 2.959030 GGGATAAGAAAAGGATGGGTGC 59.041 50.000 0.00 0.00 0.00 5.01
1472 1523 3.939740 ATGCCTGATTTGAGCTTCCTA 57.060 42.857 0.00 0.00 0.00 2.94
1497 1552 5.277828 GGCCTTAACCATTAATGCTTAGTCG 60.278 44.000 10.11 0.00 37.08 4.18
1513 1568 2.769209 AGTCGTAGGTACTCCTAGGGA 58.231 52.381 9.46 0.00 45.75 4.20
1514 1569 3.325605 AGTCGTAGGTACTCCTAGGGAT 58.674 50.000 9.46 0.00 45.75 3.85
1515 1570 3.072768 AGTCGTAGGTACTCCTAGGGATG 59.927 52.174 9.46 2.34 45.75 3.51
1516 1571 2.161030 CGTAGGTACTCCTAGGGATGC 58.839 57.143 9.46 0.63 45.75 3.91
1517 1572 2.488528 CGTAGGTACTCCTAGGGATGCA 60.489 54.545 9.46 0.00 45.75 3.96
1518 1573 2.868964 AGGTACTCCTAGGGATGCAA 57.131 50.000 9.46 0.00 43.12 4.08
1519 1574 2.683768 AGGTACTCCTAGGGATGCAAG 58.316 52.381 9.46 0.00 43.12 4.01
1520 1575 2.022918 AGGTACTCCTAGGGATGCAAGT 60.023 50.000 9.46 6.36 43.12 3.16
1521 1576 2.103263 GGTACTCCTAGGGATGCAAGTG 59.897 54.545 9.46 0.00 0.00 3.16
1522 1577 2.254152 ACTCCTAGGGATGCAAGTGA 57.746 50.000 9.46 0.00 0.00 3.41
1523 1578 2.769209 ACTCCTAGGGATGCAAGTGAT 58.231 47.619 9.46 0.00 0.00 3.06
1529 1584 4.101585 CCTAGGGATGCAAGTGATAAGTGA 59.898 45.833 0.00 0.00 0.00 3.41
1530 1585 4.785346 AGGGATGCAAGTGATAAGTGAT 57.215 40.909 0.00 0.00 0.00 3.06
1532 1587 6.252599 AGGGATGCAAGTGATAAGTGATAA 57.747 37.500 0.00 0.00 0.00 1.75
1556 1611 3.183775 CGTGAAAGCCCGCATATAAGTAC 59.816 47.826 0.00 0.00 0.00 2.73
1581 1636 9.912634 ACATTAAAAGTCAACCTTATGTGAATG 57.087 29.630 0.00 0.00 31.63 2.67
1590 1645 6.430925 TCAACCTTATGTGAATGTCAAAGGAG 59.569 38.462 12.14 6.30 37.51 3.69
1637 1692 3.984018 TTACTTATGAACGTGCTTCGC 57.016 42.857 0.00 0.00 44.19 4.70
1674 1729 1.799258 GCCCGCTTGCATCATTAGGG 61.799 60.000 0.00 0.00 40.27 3.53
1675 1730 0.466189 CCCGCTTGCATCATTAGGGT 60.466 55.000 0.00 0.00 33.00 4.34
1676 1731 1.202758 CCCGCTTGCATCATTAGGGTA 60.203 52.381 0.00 0.00 33.00 3.69
1677 1732 1.873591 CCGCTTGCATCATTAGGGTAC 59.126 52.381 0.00 0.00 0.00 3.34
1678 1733 2.485479 CCGCTTGCATCATTAGGGTACT 60.485 50.000 0.00 0.00 0.00 2.73
1679 1734 2.802816 CGCTTGCATCATTAGGGTACTC 59.197 50.000 0.00 0.00 0.00 2.59
1680 1735 3.493350 CGCTTGCATCATTAGGGTACTCT 60.493 47.826 0.00 0.00 0.00 3.24
1689 1745 3.975168 TTAGGGTACTCTCACTTTGGC 57.025 47.619 0.00 0.00 0.00 4.52
1694 1750 2.072298 GTACTCTCACTTTGGCTGCTG 58.928 52.381 0.00 0.00 0.00 4.41
1695 1751 0.250640 ACTCTCACTTTGGCTGCTGG 60.251 55.000 0.00 0.00 0.00 4.85
1714 1770 1.431496 GCGCCATTTGTTTTGCTCAT 58.569 45.000 0.00 0.00 0.00 2.90
1718 1774 4.789161 GCGCCATTTGTTTTGCTCATTTTT 60.789 37.500 0.00 0.00 0.00 1.94
1747 1815 4.768448 TGTGAATTCATGATGGAGTTGCTT 59.232 37.500 12.12 0.00 0.00 3.91
1753 1821 4.009675 TCATGATGGAGTTGCTTGGTTAC 58.990 43.478 0.00 0.00 0.00 2.50
1765 1833 2.693069 CTTGGTTACTGAGCTGAGGTG 58.307 52.381 4.85 0.00 0.00 4.00
1786 1854 2.676748 GGATTGTTGGCCATATTGGGA 58.323 47.619 6.09 0.00 38.19 4.37
1791 1859 0.630673 TTGGCCATATTGGGAGCTGT 59.369 50.000 6.09 0.00 38.19 4.40
1807 1875 1.819305 GCTGTGGTGGATGGTCAAGTT 60.819 52.381 0.00 0.00 0.00 2.66
1815 1883 1.527034 GATGGTCAAGTTGCTGCTCA 58.473 50.000 0.00 0.00 0.00 4.26
1838 1906 8.618702 TCATTGTCCATTAAATTTGTTTGCAT 57.381 26.923 0.00 0.00 0.00 3.96
1871 1939 4.022935 ACATTGTGACCAATAGTGCTGTTG 60.023 41.667 2.30 2.30 39.28 3.33
1884 1952 2.943033 GTGCTGTTGTTGGTTCTACACT 59.057 45.455 0.00 0.00 0.00 3.55
1893 1961 1.847737 TGGTTCTACACTGGGTTTGGT 59.152 47.619 0.00 0.00 0.00 3.67
1900 1968 1.271163 ACACTGGGTTTGGTCGGTATG 60.271 52.381 0.00 0.00 0.00 2.39
1913 1985 3.304928 GGTCGGTATGGTATTGTAGTCCG 60.305 52.174 0.00 0.00 38.36 4.79
1916 1988 4.515191 TCGGTATGGTATTGTAGTCCGTAC 59.485 45.833 0.00 0.00 40.78 3.67
1937 2012 1.194781 TCCCTCTGGTGTCAGGAAGC 61.195 60.000 0.00 0.00 41.23 3.86
1946 2021 3.211045 GGTGTCAGGAAGCACAAAGTAA 58.789 45.455 0.00 0.00 37.35 2.24
2029 2104 0.323360 GTGAACCCTGGGCTGCAATA 60.323 55.000 14.08 0.00 0.00 1.90
2030 2105 0.630673 TGAACCCTGGGCTGCAATAT 59.369 50.000 14.08 0.00 0.00 1.28
2068 2143 3.793465 GCAACAGGTTTGCAGAAGACTTC 60.793 47.826 7.14 7.14 44.34 3.01
2104 2179 6.690194 ATATGTCAATTGCCTTCTTCACTC 57.310 37.500 0.00 0.00 0.00 3.51
2109 2184 3.625649 ATTGCCTTCTTCACTCTCCTC 57.374 47.619 0.00 0.00 0.00 3.71
2110 2185 1.270907 TGCCTTCTTCACTCTCCTCC 58.729 55.000 0.00 0.00 0.00 4.30
2115 2190 0.787084 TCTTCACTCTCCTCCACCCT 59.213 55.000 0.00 0.00 0.00 4.34
2117 2192 2.024846 TCTTCACTCTCCTCCACCCTAG 60.025 54.545 0.00 0.00 0.00 3.02
2118 2193 0.033011 TCACTCTCCTCCACCCTAGC 60.033 60.000 0.00 0.00 0.00 3.42
2119 2194 0.324738 CACTCTCCTCCACCCTAGCA 60.325 60.000 0.00 0.00 0.00 3.49
2120 2195 0.032615 ACTCTCCTCCACCCTAGCAG 60.033 60.000 0.00 0.00 0.00 4.24
2121 2196 0.758685 CTCTCCTCCACCCTAGCAGG 60.759 65.000 0.00 0.00 34.30 4.85
2130 2205 4.056805 CCTAGCAGGGCTTCTGGA 57.943 61.111 0.00 0.00 43.54 3.86
2131 2206 2.537600 CCTAGCAGGGCTTCTGGAT 58.462 57.895 0.00 0.00 43.54 3.41
2132 2207 0.108207 CCTAGCAGGGCTTCTGGATG 59.892 60.000 0.00 0.00 43.54 3.51
2133 2208 0.534652 CTAGCAGGGCTTCTGGATGC 60.535 60.000 0.00 0.62 43.54 3.91
2134 2209 2.274760 GCAGGGCTTCTGGATGCT 59.725 61.111 9.07 0.00 43.54 3.79
2135 2210 2.119655 GCAGGGCTTCTGGATGCTG 61.120 63.158 9.07 0.00 43.54 4.41
2136 2211 2.119655 CAGGGCTTCTGGATGCTGC 61.120 63.158 8.07 0.00 39.76 5.25
2137 2212 2.044650 GGGCTTCTGGATGCTGCA 60.045 61.111 4.13 4.13 0.00 4.41
2138 2213 1.455217 GGGCTTCTGGATGCTGCAT 60.455 57.895 16.20 16.20 0.00 3.96
2139 2214 0.179009 GGGCTTCTGGATGCTGCATA 60.179 55.000 16.23 0.00 0.00 3.14
2140 2215 1.683943 GGCTTCTGGATGCTGCATAA 58.316 50.000 16.23 5.26 0.00 1.90
2141 2216 2.236766 GGCTTCTGGATGCTGCATAAT 58.763 47.619 16.23 0.00 0.00 1.28
2142 2217 3.415212 GGCTTCTGGATGCTGCATAATA 58.585 45.455 16.23 4.06 0.00 0.98
2143 2218 3.190118 GGCTTCTGGATGCTGCATAATAC 59.810 47.826 16.23 7.09 0.00 1.89
2144 2219 3.190118 GCTTCTGGATGCTGCATAATACC 59.810 47.826 16.23 12.78 0.00 2.73
2145 2220 3.423539 TCTGGATGCTGCATAATACCC 57.576 47.619 16.23 12.40 0.00 3.69
2146 2221 2.710471 TCTGGATGCTGCATAATACCCA 59.290 45.455 16.23 16.27 0.00 4.51
2147 2222 3.079578 CTGGATGCTGCATAATACCCAG 58.920 50.000 24.19 24.19 34.72 4.45
2148 2223 2.710471 TGGATGCTGCATAATACCCAGA 59.290 45.455 16.23 0.00 0.00 3.86
2149 2224 3.138098 TGGATGCTGCATAATACCCAGAA 59.862 43.478 16.23 0.00 0.00 3.02
2166 2241 9.936329 ATACCCAGAATTTTATACAAATGGTCT 57.064 29.630 0.00 0.00 0.00 3.85
2177 2252 3.886123 ACAAATGGTCTGTATACTGCCC 58.114 45.455 15.47 10.54 0.00 5.36
2180 2255 1.855295 TGGTCTGTATACTGCCCGAA 58.145 50.000 15.47 0.00 0.00 4.30
2187 2262 2.431782 TGTATACTGCCCGAAACCCTAC 59.568 50.000 4.17 0.00 0.00 3.18
2224 2301 5.721000 TCATTTCAAACTTCCCATAATGCCT 59.279 36.000 0.00 0.00 0.00 4.75
2226 2303 6.773976 TTTCAAACTTCCCATAATGCCTAG 57.226 37.500 0.00 0.00 0.00 3.02
2285 2362 6.707440 AACCATCAATTTGTCTGTGTACAA 57.293 33.333 0.00 0.00 37.58 2.41
2293 2370 2.902608 TGTCTGTGTACAATCCTCCCT 58.097 47.619 0.00 0.00 0.00 4.20
2294 2371 2.832129 TGTCTGTGTACAATCCTCCCTC 59.168 50.000 0.00 0.00 0.00 4.30
2295 2372 2.168728 GTCTGTGTACAATCCTCCCTCC 59.831 54.545 0.00 0.00 0.00 4.30
2348 2425 5.810525 AGACTGAGACGAAACAAACAATTG 58.189 37.500 3.24 3.24 42.46 2.32
2350 2427 4.202010 ACTGAGACGAAACAAACAATTGGG 60.202 41.667 10.83 1.44 41.01 4.12
2359 2436 3.600388 ACAAACAATTGGGCGAACAAAA 58.400 36.364 10.83 0.00 41.01 2.44
2361 2438 4.272261 ACAAACAATTGGGCGAACAAAATC 59.728 37.500 10.83 0.00 41.01 2.17
2398 2475 3.369471 CCCTGACACAACACGATAATCCT 60.369 47.826 0.00 0.00 0.00 3.24
2431 2508 4.584743 AGTTCCTCTTTCAACCAAACATCC 59.415 41.667 0.00 0.00 0.00 3.51
2437 2514 4.952957 TCTTTCAACCAAACATCCAAGTGA 59.047 37.500 0.00 0.00 0.00 3.41
2454 2531 9.838339 ATCCAAGTGAAGTTTATTATCGAAGAT 57.162 29.630 0.00 0.00 45.12 2.40
2462 2539 7.865706 AGTTTATTATCGAAGATTTGCCAGT 57.134 32.000 0.00 0.00 45.12 4.00
2496 2573 8.037758 TCTTGTTCTTTATTTGGTTTTTGCAGA 58.962 29.630 0.00 0.00 0.00 4.26
2523 2600 3.391296 ACACTGACCATTCTGTAACTGGT 59.609 43.478 0.00 0.00 45.80 4.00
2560 2637 9.877178 TTTCTGTAGAAGGATCTTGTAGAAATC 57.123 33.333 0.00 0.00 35.31 2.17
2600 2677 3.322254 AGTCCCGAGCTAATAACATCCTG 59.678 47.826 0.00 0.00 0.00 3.86
2609 2686 7.438160 CGAGCTAATAACATCCTGAATTACACA 59.562 37.037 0.00 0.00 0.00 3.72
2619 2696 3.947834 CCTGAATTACACATCCTCCAACC 59.052 47.826 0.00 0.00 0.00 3.77
2631 2708 7.000472 CACATCCTCCAACCTGTATATCAAAT 59.000 38.462 0.00 0.00 0.00 2.32
2695 2772 6.381994 ACATCTTTGATTCACCTGCCATATTT 59.618 34.615 0.00 0.00 0.00 1.40
2725 2802 2.208132 ACAATCAACCACCGGCATAA 57.792 45.000 0.00 0.00 0.00 1.90
2766 2843 9.884465 GAAAATTACATGATAGTGAATACTGGC 57.116 33.333 0.00 0.00 37.78 4.85
2794 2871 7.985184 TGTACAACCTTTATAGCTCTACCATTG 59.015 37.037 0.00 0.00 0.00 2.82
2827 2904 1.466558 GCTAAGGAGCTTTGTCAGTGC 59.533 52.381 0.00 0.00 45.98 4.40
2831 2908 2.157738 AGGAGCTTTGTCAGTGCAATC 58.842 47.619 0.00 0.00 0.00 2.67
2835 2912 1.615392 GCTTTGTCAGTGCAATCCCTT 59.385 47.619 0.00 0.00 0.00 3.95
2876 2953 8.114331 TGTGTGATAAAGATTTCTTTCTGCAT 57.886 30.769 8.76 0.00 44.34 3.96
2959 3036 7.216973 TCACAGAAAACTCTAGTCTTACCTC 57.783 40.000 0.00 0.00 0.00 3.85
2960 3037 6.776116 TCACAGAAAACTCTAGTCTTACCTCA 59.224 38.462 0.00 0.00 0.00 3.86
3009 3086 5.939883 CCATGGTCAGTTTGTTGATCTTCTA 59.060 40.000 2.57 0.00 0.00 2.10
3117 3194 4.422073 AACTATATGCTTACTGCTGGCA 57.578 40.909 0.00 0.00 43.37 4.92
3555 3632 5.049405 CCATCAGGTTTGTGAACACTTAGTC 60.049 44.000 6.51 0.00 37.51 2.59
3561 3638 5.064325 GGTTTGTGAACACTTAGTCGAACTT 59.936 40.000 6.51 0.00 37.51 2.66
3562 3639 6.256321 GGTTTGTGAACACTTAGTCGAACTTA 59.744 38.462 6.51 0.00 37.51 2.24
3605 3682 8.462143 TTGTTATTCTCGAGCTTTACTTACAG 57.538 34.615 7.81 0.00 0.00 2.74
3681 3758 1.404181 GCACAGCGGAGATTAGTCACA 60.404 52.381 0.00 0.00 0.00 3.58
3702 3779 7.066766 GTCACAATCTTCTCAGCTCCAAATTAT 59.933 37.037 0.00 0.00 0.00 1.28
3816 3893 2.286772 ACCGCGTGTGAAAAGACAAATC 60.287 45.455 4.92 0.00 0.00 2.17
3834 3911 9.320295 AGACAAATCCCAAATAAGGTAAATCAA 57.680 29.630 0.00 0.00 0.00 2.57
3909 3986 8.623903 TGTGGAGATAGAATGTTTTATCATTGC 58.376 33.333 6.20 0.00 38.03 3.56
3912 3989 9.837525 GGAGATAGAATGTTTTATCATTGCATC 57.162 33.333 0.00 0.00 38.03 3.91
3929 4087 7.871463 TCATTGCATCATCATTACTGACTAGAG 59.129 37.037 0.00 0.00 33.22 2.43
3932 4090 8.237811 TGCATCATCATTACTGACTAGAGTAA 57.762 34.615 0.00 1.30 41.53 2.24
3964 4122 7.590279 AGTAGAAACCATGATTTACAAAACGG 58.410 34.615 0.00 0.00 0.00 4.44
4000 4158 2.211250 AATGCCTCTGATGCACAAGT 57.789 45.000 9.80 0.00 42.38 3.16
4030 4188 4.982295 GTGGTTTGCTGGTTCTGTTAATTC 59.018 41.667 0.00 0.00 0.00 2.17
4049 4207 6.645790 AATTCTTGCATAATCCAGTCATCC 57.354 37.500 0.00 0.00 0.00 3.51
4052 4210 1.417517 TGCATAATCCAGTCATCCGCT 59.582 47.619 0.00 0.00 0.00 5.52
4093 4251 4.015406 CTGCACAGTGGGCCGGTA 62.015 66.667 16.38 0.00 0.00 4.02
4094 4252 4.323477 TGCACAGTGGGCCGGTAC 62.323 66.667 16.38 0.00 0.00 3.34
4095 4253 4.323477 GCACAGTGGGCCGGTACA 62.323 66.667 5.91 0.00 0.00 2.90
4097 4255 1.002624 CACAGTGGGCCGGTACATT 60.003 57.895 1.90 0.00 0.00 2.71
4099 4257 0.985760 ACAGTGGGCCGGTACATTAA 59.014 50.000 1.90 0.00 0.00 1.40
4100 4258 1.351683 ACAGTGGGCCGGTACATTAAA 59.648 47.619 1.90 0.00 0.00 1.52
4101 4259 2.224818 ACAGTGGGCCGGTACATTAAAA 60.225 45.455 1.90 0.00 0.00 1.52
4102 4260 2.820787 CAGTGGGCCGGTACATTAAAAA 59.179 45.455 1.90 0.00 0.00 1.94
4128 4286 8.682936 AATTCTAAATTCTAATGCCATCTCGT 57.317 30.769 0.00 0.00 0.00 4.18
4133 4291 4.944962 TTCTAATGCCATCTCGTTGTTG 57.055 40.909 0.00 0.00 0.00 3.33
4148 4306 4.754618 TCGTTGTTGCTTCTGTATGTTCAT 59.245 37.500 0.00 0.00 0.00 2.57
4156 4314 6.003326 TGCTTCTGTATGTTCATGAGGAAAA 58.997 36.000 0.00 0.00 37.23 2.29
4161 4319 8.408043 TCTGTATGTTCATGAGGAAAATTTGT 57.592 30.769 0.00 0.00 35.10 2.83
4166 4324 7.773489 TGTTCATGAGGAAAATTTGTGGATA 57.227 32.000 0.00 0.00 37.23 2.59
4183 4341 3.447586 TGGATAACACTACCACAGAGAGC 59.552 47.826 0.00 0.00 0.00 4.09
4255 4413 4.591321 TCAAGAAGGGGCTATTCAATGT 57.409 40.909 5.31 0.00 0.00 2.71
4256 4414 4.272489 TCAAGAAGGGGCTATTCAATGTG 58.728 43.478 5.31 0.00 0.00 3.21
4263 4421 4.646492 AGGGGCTATTCAATGTGTTCATTC 59.354 41.667 0.00 0.00 41.66 2.67
4265 4423 5.450965 GGGGCTATTCAATGTGTTCATTCTG 60.451 44.000 0.00 0.00 41.66 3.02
4267 4425 6.032094 GGCTATTCAATGTGTTCATTCTGTG 58.968 40.000 0.00 0.00 41.66 3.66
4268 4426 6.127925 GGCTATTCAATGTGTTCATTCTGTGA 60.128 38.462 0.00 0.00 41.66 3.58
4273 4431 5.769162 TCAATGTGTTCATTCTGTGATTCCA 59.231 36.000 0.00 0.00 41.66 3.53
4274 4432 6.434965 TCAATGTGTTCATTCTGTGATTCCAT 59.565 34.615 0.00 0.00 41.66 3.41
4286 4444 8.722480 TTCTGTGATTCCATCAACTATTACAG 57.278 34.615 0.00 0.00 41.69 2.74
4287 4445 7.851228 TCTGTGATTCCATCAACTATTACAGT 58.149 34.615 0.00 0.00 41.69 3.55
4288 4446 8.977412 TCTGTGATTCCATCAACTATTACAGTA 58.023 33.333 0.00 0.00 41.69 2.74
4289 4447 8.942338 TGTGATTCCATCAACTATTACAGTAC 57.058 34.615 0.00 0.00 41.69 2.73
4290 4448 8.536175 TGTGATTCCATCAACTATTACAGTACA 58.464 33.333 0.00 0.00 41.69 2.90
4291 4449 8.818057 GTGATTCCATCAACTATTACAGTACAC 58.182 37.037 0.00 0.00 41.69 2.90
4349 5689 1.351350 GGCCTAGGGAAACTTCACAGT 59.649 52.381 11.72 0.00 31.44 3.55
4359 5699 7.504403 AGGGAAACTTCACAGTAGATATCATG 58.496 38.462 5.32 3.45 31.44 3.07
4360 5700 6.708054 GGGAAACTTCACAGTAGATATCATGG 59.292 42.308 5.32 0.00 30.68 3.66
4362 5702 4.876125 ACTTCACAGTAGATATCATGGCG 58.124 43.478 5.32 0.00 0.00 5.69
4363 5703 4.584743 ACTTCACAGTAGATATCATGGCGA 59.415 41.667 5.32 0.30 0.00 5.54
4368 5708 4.459685 ACAGTAGATATCATGGCGACCTAC 59.540 45.833 5.32 0.00 0.00 3.18
4369 5709 4.702612 CAGTAGATATCATGGCGACCTACT 59.297 45.833 5.32 0.00 36.69 2.57
4371 5711 2.750166 AGATATCATGGCGACCTACTCG 59.250 50.000 5.32 0.00 45.97 4.18
4417 5757 8.611051 AGAATGGAAGTGATAAGTAGGTTAGT 57.389 34.615 0.00 0.00 0.00 2.24
4446 5786 2.461300 TTCCCACAAACACCCAATGA 57.539 45.000 0.00 0.00 0.00 2.57
4454 5794 5.165676 CACAAACACCCAATGATCAGAATG 58.834 41.667 0.09 0.17 37.54 2.67
4472 5874 6.322456 TCAGAATGATTAGTACTCCAGGACTG 59.678 42.308 0.00 3.32 42.56 3.51
4488 5890 3.011708 AGGACTGCATTAACCCTTCCAAT 59.988 43.478 0.00 0.00 0.00 3.16
4517 5919 9.823098 GCATATCTTAATCAATTGATCTGTGAC 57.177 33.333 20.95 3.07 32.75 3.67
4525 5927 7.655521 ATCAATTGATCTGTGACCATCAAAT 57.344 32.000 15.36 1.45 41.28 2.32
4526 5928 8.756486 ATCAATTGATCTGTGACCATCAAATA 57.244 30.769 15.36 2.05 41.28 1.40
4527 5929 8.217131 TCAATTGATCTGTGACCATCAAATAG 57.783 34.615 3.38 5.14 41.28 1.73
4528 5930 6.630444 ATTGATCTGTGACCATCAAATAGC 57.370 37.500 10.09 0.00 41.28 2.97
4529 5931 5.363562 TGATCTGTGACCATCAAATAGCT 57.636 39.130 0.00 0.00 0.00 3.32
4530 5932 6.484364 TGATCTGTGACCATCAAATAGCTA 57.516 37.500 0.00 0.00 0.00 3.32
4623 6074 9.621239 AATATCTGATAAGTTCTATTCCCTCCA 57.379 33.333 0.81 0.00 0.00 3.86
4697 6148 5.639757 TGAAATGAGTGAACAAACACACTG 58.360 37.500 0.00 0.00 45.54 3.66
4701 6152 5.895636 TGAGTGAACAAACACACTGAAAT 57.104 34.783 0.00 0.00 45.54 2.17
4812 6353 7.092079 TCAAATGTATGATTTGAAGGCAACAG 58.908 34.615 10.67 0.00 42.82 3.16
4851 6393 5.279456 CCTTTTTACCTTAACAGCCAGCAAT 60.279 40.000 0.00 0.00 0.00 3.56
4852 6394 5.799827 TTTTACCTTAACAGCCAGCAATT 57.200 34.783 0.00 0.00 0.00 2.32
4874 6416 2.050144 GGGGAAGTGCCTGATCTGATA 58.950 52.381 0.38 0.00 36.66 2.15
4882 6424 4.164796 AGTGCCTGATCTGATAAACATCCA 59.835 41.667 0.38 0.00 0.00 3.41
4902 6444 9.438163 ACATCCAATTCCTTCAATATTACCATT 57.562 29.630 0.00 0.00 0.00 3.16
5036 6578 0.111061 TGTCCATTGGCTCTGCACTT 59.889 50.000 0.00 0.00 0.00 3.16
5095 6637 4.216257 CACCACCTATTCTGGTTGTTCTTG 59.784 45.833 0.00 0.00 40.25 3.02
5189 6734 5.772825 TTGTGAGCATCTATTATTTGCCC 57.227 39.130 0.00 0.00 37.07 5.36
5201 6746 8.450578 TCTATTATTTGCCCTATGTTTGTGAG 57.549 34.615 0.00 0.00 0.00 3.51
5209 6754 2.993899 CCTATGTTTGTGAGGTGACGTC 59.006 50.000 9.11 9.11 0.00 4.34
5212 6757 2.276201 TGTTTGTGAGGTGACGTCTTG 58.724 47.619 17.92 0.00 0.00 3.02
5231 6776 4.335315 TCTTGCCAACTTGTTCTACACTTG 59.665 41.667 0.00 0.00 0.00 3.16
5236 6781 5.296035 GCCAACTTGTTCTACACTTGTACTT 59.704 40.000 0.00 0.00 0.00 2.24
5237 6782 6.480981 GCCAACTTGTTCTACACTTGTACTTA 59.519 38.462 0.00 0.00 0.00 2.24
5238 6783 7.172703 GCCAACTTGTTCTACACTTGTACTTAT 59.827 37.037 0.00 0.00 0.00 1.73
5239 6784 8.709646 CCAACTTGTTCTACACTTGTACTTATC 58.290 37.037 0.00 0.00 0.00 1.75
5240 6785 9.477484 CAACTTGTTCTACACTTGTACTTATCT 57.523 33.333 0.00 0.00 0.00 1.98
5336 6978 5.973651 TTTTGTACTCATCATCATCGCTC 57.026 39.130 0.00 0.00 0.00 5.03
5337 6979 4.654091 TTGTACTCATCATCATCGCTCA 57.346 40.909 0.00 0.00 0.00 4.26
5338 6980 4.654091 TGTACTCATCATCATCGCTCAA 57.346 40.909 0.00 0.00 0.00 3.02
5339 6981 5.009854 TGTACTCATCATCATCGCTCAAA 57.990 39.130 0.00 0.00 0.00 2.69
5340 6982 5.604565 TGTACTCATCATCATCGCTCAAAT 58.395 37.500 0.00 0.00 0.00 2.32
5341 6983 6.051074 TGTACTCATCATCATCGCTCAAATT 58.949 36.000 0.00 0.00 0.00 1.82
5342 6984 6.539826 TGTACTCATCATCATCGCTCAAATTT 59.460 34.615 0.00 0.00 0.00 1.82
5343 6985 5.817988 ACTCATCATCATCGCTCAAATTTG 58.182 37.500 12.15 12.15 0.00 2.32
5344 6986 5.177725 TCATCATCATCGCTCAAATTTGG 57.822 39.130 17.90 9.84 0.00 3.28
5345 6987 4.641541 TCATCATCATCGCTCAAATTTGGT 59.358 37.500 17.90 0.00 0.00 3.67
5346 6988 4.359971 TCATCATCGCTCAAATTTGGTG 57.640 40.909 17.90 14.28 0.00 4.17
5347 6989 4.009002 TCATCATCGCTCAAATTTGGTGA 58.991 39.130 17.90 18.41 0.00 4.02
5348 6990 4.458642 TCATCATCGCTCAAATTTGGTGAA 59.541 37.500 17.90 7.46 0.00 3.18
5349 6991 4.844998 TCATCGCTCAAATTTGGTGAAA 57.155 36.364 17.90 10.14 0.00 2.69
5350 6992 4.797471 TCATCGCTCAAATTTGGTGAAAG 58.203 39.130 17.90 15.08 0.00 2.62
5351 6993 4.278170 TCATCGCTCAAATTTGGTGAAAGT 59.722 37.500 17.90 4.25 0.00 2.66
5352 6994 4.223320 TCGCTCAAATTTGGTGAAAGTC 57.777 40.909 17.90 3.97 0.00 3.01
5353 6995 2.973224 CGCTCAAATTTGGTGAAAGTCG 59.027 45.455 17.90 10.87 0.00 4.18
5394 7036 2.004583 TGGTGCGGATTAGAGAAACG 57.995 50.000 0.00 0.00 0.00 3.60
5415 7057 3.665323 CGGAGTTCATTTTCAAGCTCACG 60.665 47.826 0.00 0.00 0.00 4.35
5421 7063 1.214367 TTTTCAAGCTCACGTCGGTC 58.786 50.000 0.00 0.00 0.00 4.79
5425 7067 2.635714 TCAAGCTCACGTCGGTCTATA 58.364 47.619 0.00 0.00 0.00 1.31
5442 7084 2.479566 ATAGCCCCACTGATTATGCG 57.520 50.000 0.00 0.00 0.00 4.73
5478 7120 4.502016 TCTTTGATGAGCTTGCTAGTCAG 58.498 43.478 0.00 0.00 0.00 3.51
5508 7150 4.041917 GGTGTGGCATGGCACGTG 62.042 66.667 37.51 12.28 36.54 4.49
5518 7160 3.188786 GGCACGTGTCTGGCGATC 61.189 66.667 18.38 0.00 0.00 3.69
5529 7171 2.352960 GTCTGGCGATCTCAACCAAATC 59.647 50.000 0.00 0.00 31.81 2.17
5538 7180 2.771943 TCTCAACCAAATCTATCGGGCT 59.228 45.455 0.00 0.00 0.00 5.19
5549 7191 3.314693 TCTATCGGGCTAGGGACAAAAT 58.685 45.455 0.00 0.00 0.00 1.82
5567 7210 9.573133 GGACAAAATAACAGAAACATCAATAGG 57.427 33.333 0.00 0.00 0.00 2.57
5604 7247 0.815615 CCGGAATGCCCTACAAGCTC 60.816 60.000 0.00 0.00 0.00 4.09
5605 7248 0.107703 CGGAATGCCCTACAAGCTCA 60.108 55.000 0.00 0.00 0.00 4.26
5612 7255 1.608283 GCCCTACAAGCTCACGAACTT 60.608 52.381 0.00 0.00 0.00 2.66
5621 7264 6.659776 ACAAGCTCACGAACTTAAAGAAATC 58.340 36.000 0.00 0.00 0.00 2.17
5634 7277 8.358582 ACTTAAAGAAATCCATCTGCAGAATT 57.641 30.769 22.50 13.33 0.00 2.17
5659 7302 4.914983 AGATTCACTTGGAGCAATGAGAA 58.085 39.130 0.00 0.00 0.00 2.87
5662 7305 3.415212 TCACTTGGAGCAATGAGAAAGG 58.585 45.455 0.00 0.00 0.00 3.11
5665 7308 3.181429 ACTTGGAGCAATGAGAAAGGGAA 60.181 43.478 0.00 0.00 0.00 3.97
5693 7336 3.004734 CCCTCTGCAAACTTGATTCGTTT 59.995 43.478 0.00 0.00 35.12 3.60
5756 7399 2.150397 TGCATGCTCTCTCATCATCG 57.850 50.000 20.33 0.00 0.00 3.84
5760 7403 1.396653 TGCTCTCTCATCATCGCTGA 58.603 50.000 0.00 0.00 35.41 4.26
5774 7417 2.867855 GCTGACCGACCACTGTCCA 61.868 63.158 0.00 0.00 38.32 4.02
5786 7429 0.471617 ACTGTCCACTCTTGCTTGCT 59.528 50.000 0.00 0.00 0.00 3.91
5791 7434 1.348696 TCCACTCTTGCTTGCTGATGA 59.651 47.619 0.00 0.00 0.00 2.92
5838 7486 2.587522 GTTTGAGAACTTCTGGGCCTT 58.412 47.619 4.53 0.00 32.91 4.35
5839 7487 2.959030 GTTTGAGAACTTCTGGGCCTTT 59.041 45.455 4.53 0.00 32.91 3.11
5860 7508 7.574592 GCCTTTATGCCTAGATTCAATGATGTC 60.575 40.741 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.405661 CGAGAGGCAAAGGAACCCTAC 60.406 57.143 0.00 0.00 31.13 3.18
41 42 1.885850 GTGAACCAACGACGGTGCT 60.886 57.895 7.56 0.00 39.95 4.40
48 49 0.313043 GAGACGAGGTGAACCAACGA 59.687 55.000 20.10 0.00 39.77 3.85
73 74 1.842381 GCGCCCCATAGCCCTAAGAT 61.842 60.000 0.00 0.00 0.00 2.40
74 75 2.516888 GCGCCCCATAGCCCTAAGA 61.517 63.158 0.00 0.00 0.00 2.10
83 84 2.818169 GGATCCACAGCGCCCCATA 61.818 63.158 6.95 0.00 0.00 2.74
93 95 0.404040 GACAAGGGTTGGGATCCACA 59.596 55.000 15.23 6.45 30.78 4.17
111 113 1.057851 AAACTGAACCCTCCCACCGA 61.058 55.000 0.00 0.00 0.00 4.69
123 125 9.921637 AACTCAAAAACACATCTAAAAACTGAA 57.078 25.926 0.00 0.00 0.00 3.02
163 167 1.002366 CCATCTCGCCTTTCTGAACG 58.998 55.000 0.00 0.00 0.00 3.95
170 179 2.436646 CACCGCCATCTCGCCTTT 60.437 61.111 0.00 0.00 0.00 3.11
186 195 5.464588 TCTTATTTCATCATTGGGGGTCA 57.535 39.130 0.00 0.00 0.00 4.02
188 197 6.686544 AGAATCTTATTTCATCATTGGGGGT 58.313 36.000 0.00 0.00 0.00 4.95
230 241 2.769663 AGGATGCTAAATGTACCACCGA 59.230 45.455 0.00 0.00 0.00 4.69
238 249 2.643551 CCCACGAAGGATGCTAAATGT 58.356 47.619 0.00 0.00 41.22 2.71
242 253 1.153449 CGCCCACGAAGGATGCTAA 60.153 57.895 0.00 0.00 43.93 3.09
250 261 2.252260 CTTTGCACGCCCACGAAG 59.748 61.111 0.00 0.00 43.93 3.79
264 275 5.422214 AGATCCGTTGAAGATACACCTTT 57.578 39.130 0.00 0.00 0.00 3.11
272 283 7.730084 TCATCAAAGATAGATCCGTTGAAGAT 58.270 34.615 9.21 0.00 35.95 2.40
276 287 8.615211 CAAATTCATCAAAGATAGATCCGTTGA 58.385 33.333 8.08 8.08 36.43 3.18
278 289 7.284034 AGCAAATTCATCAAAGATAGATCCGTT 59.716 33.333 0.00 0.00 0.00 4.44
316 327 4.993905 TCACACGAATGTAGATGAACGAT 58.006 39.130 0.00 0.00 36.72 3.73
329 340 5.407407 AGTAGTGGAAAGATCACACGAAT 57.593 39.130 0.00 0.00 39.95 3.34
338 349 4.636206 GCCGATGAAAAGTAGTGGAAAGAT 59.364 41.667 0.00 0.00 0.00 2.40
339 350 4.000988 GCCGATGAAAAGTAGTGGAAAGA 58.999 43.478 0.00 0.00 0.00 2.52
340 351 3.181520 CGCCGATGAAAAGTAGTGGAAAG 60.182 47.826 0.00 0.00 0.00 2.62
342 353 2.343101 CGCCGATGAAAAGTAGTGGAA 58.657 47.619 0.00 0.00 0.00 3.53
343 354 1.404986 CCGCCGATGAAAAGTAGTGGA 60.405 52.381 0.00 0.00 0.00 4.02
344 355 1.006832 CCGCCGATGAAAAGTAGTGG 58.993 55.000 0.00 0.00 0.00 4.00
345 356 0.373716 GCCGCCGATGAAAAGTAGTG 59.626 55.000 0.00 0.00 0.00 2.74
378 411 1.042559 CCCCCATAAAACCAGCGCAT 61.043 55.000 11.47 0.00 0.00 4.73
388 421 4.959839 GTCCTCATAAAAAGCCCCCATAAA 59.040 41.667 0.00 0.00 0.00 1.40
389 422 4.231890 AGTCCTCATAAAAAGCCCCCATAA 59.768 41.667 0.00 0.00 0.00 1.90
397 430 5.123979 ACATCGGAAAGTCCTCATAAAAAGC 59.876 40.000 0.00 0.00 33.30 3.51
401 434 5.414789 TGACATCGGAAAGTCCTCATAAA 57.585 39.130 10.28 0.00 33.30 1.40
402 435 5.414789 TTGACATCGGAAAGTCCTCATAA 57.585 39.130 10.28 0.00 33.30 1.90
403 436 5.614324 ATTGACATCGGAAAGTCCTCATA 57.386 39.130 10.28 0.00 33.30 2.15
405 438 3.981071 ATTGACATCGGAAAGTCCTCA 57.019 42.857 10.28 0.00 33.30 3.86
423 457 6.349860 GGAGTCGGGCAAAACTTATTGTAATT 60.350 38.462 0.00 0.00 32.80 1.40
475 510 3.131396 CACTGAAACTAGTTGAAGGCGT 58.869 45.455 9.34 0.00 0.00 5.68
483 518 7.661437 TGATGATTACAAGCACTGAAACTAGTT 59.339 33.333 1.12 1.12 0.00 2.24
484 519 7.118390 GTGATGATTACAAGCACTGAAACTAGT 59.882 37.037 0.00 0.00 34.71 2.57
487 522 6.000219 AGTGATGATTACAAGCACTGAAACT 59.000 36.000 0.00 0.00 41.02 2.66
489 524 7.386059 TCTAGTGATGATTACAAGCACTGAAA 58.614 34.615 4.69 0.00 41.84 2.69
529 565 7.162761 TGAACGGAGGAGTAAAAATTACATCA 58.837 34.615 3.37 0.00 0.00 3.07
565 601 9.530633 GGAGTATATTGTAAGACGTTTTCTGAT 57.469 33.333 0.00 0.00 33.46 2.90
566 602 7.977853 GGGAGTATATTGTAAGACGTTTTCTGA 59.022 37.037 0.00 0.00 33.46 3.27
567 603 7.980099 AGGGAGTATATTGTAAGACGTTTTCTG 59.020 37.037 0.00 0.00 33.46 3.02
568 604 8.075761 AGGGAGTATATTGTAAGACGTTTTCT 57.924 34.615 0.00 0.00 35.32 2.52
569 605 8.196103 AGAGGGAGTATATTGTAAGACGTTTTC 58.804 37.037 0.00 0.00 0.00 2.29
570 606 7.980099 CAGAGGGAGTATATTGTAAGACGTTTT 59.020 37.037 0.00 0.00 0.00 2.43
571 607 7.123847 ACAGAGGGAGTATATTGTAAGACGTTT 59.876 37.037 0.00 0.00 0.00 3.60
572 608 6.606395 ACAGAGGGAGTATATTGTAAGACGTT 59.394 38.462 0.00 0.00 0.00 3.99
573 609 6.127793 ACAGAGGGAGTATATTGTAAGACGT 58.872 40.000 0.00 0.00 0.00 4.34
574 610 6.636562 ACAGAGGGAGTATATTGTAAGACG 57.363 41.667 0.00 0.00 0.00 4.18
575 611 8.240267 AGAACAGAGGGAGTATATTGTAAGAC 57.760 38.462 0.00 0.00 0.00 3.01
576 612 9.931698 TTAGAACAGAGGGAGTATATTGTAAGA 57.068 33.333 0.00 0.00 0.00 2.10
582 618 9.853177 CCAATTTTAGAACAGAGGGAGTATATT 57.147 33.333 0.00 0.00 0.00 1.28
583 619 9.004231 ACCAATTTTAGAACAGAGGGAGTATAT 57.996 33.333 0.00 0.00 0.00 0.86
584 620 8.388656 ACCAATTTTAGAACAGAGGGAGTATA 57.611 34.615 0.00 0.00 0.00 1.47
585 621 7.272144 ACCAATTTTAGAACAGAGGGAGTAT 57.728 36.000 0.00 0.00 0.00 2.12
586 622 6.697641 ACCAATTTTAGAACAGAGGGAGTA 57.302 37.500 0.00 0.00 0.00 2.59
587 623 5.584551 ACCAATTTTAGAACAGAGGGAGT 57.415 39.130 0.00 0.00 0.00 3.85
588 624 6.472887 TGTACCAATTTTAGAACAGAGGGAG 58.527 40.000 0.00 0.00 0.00 4.30
589 625 6.442541 TGTACCAATTTTAGAACAGAGGGA 57.557 37.500 0.00 0.00 0.00 4.20
590 626 8.047310 ACTATGTACCAATTTTAGAACAGAGGG 58.953 37.037 0.00 0.00 32.08 4.30
591 627 9.449719 AACTATGTACCAATTTTAGAACAGAGG 57.550 33.333 0.00 0.00 32.08 3.69
595 631 9.787435 ACTCAACTATGTACCAATTTTAGAACA 57.213 29.630 0.00 0.00 0.00 3.18
606 642 9.599866 CAAAATAGATGACTCAACTATGTACCA 57.400 33.333 9.05 0.00 31.50 3.25
607 643 9.817809 TCAAAATAGATGACTCAACTATGTACC 57.182 33.333 9.05 0.00 31.50 3.34
611 647 9.694520 CGTTTCAAAATAGATGACTCAACTATG 57.305 33.333 9.05 0.88 31.50 2.23
612 648 8.883731 CCGTTTCAAAATAGATGACTCAACTAT 58.116 33.333 3.54 3.54 32.22 2.12
613 649 8.092068 TCCGTTTCAAAATAGATGACTCAACTA 58.908 33.333 0.00 0.00 0.00 2.24
614 650 6.934645 TCCGTTTCAAAATAGATGACTCAACT 59.065 34.615 0.00 0.00 0.00 3.16
615 651 7.129109 TCCGTTTCAAAATAGATGACTCAAC 57.871 36.000 0.00 0.00 0.00 3.18
616 652 6.371548 CCTCCGTTTCAAAATAGATGACTCAA 59.628 38.462 0.00 0.00 0.00 3.02
617 653 5.874810 CCTCCGTTTCAAAATAGATGACTCA 59.125 40.000 0.00 0.00 0.00 3.41
618 654 5.294552 CCCTCCGTTTCAAAATAGATGACTC 59.705 44.000 0.00 0.00 0.00 3.36
619 655 5.045869 TCCCTCCGTTTCAAAATAGATGACT 60.046 40.000 0.00 0.00 0.00 3.41
620 656 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
621 657 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
622 658 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
623 659 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
624 660 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
625 661 6.258068 GTCATACTCCCTCCGTTTCAAAATAG 59.742 42.308 0.00 0.00 0.00 1.73
626 662 6.110707 GTCATACTCCCTCCGTTTCAAAATA 58.889 40.000 0.00 0.00 0.00 1.40
627 663 4.941873 GTCATACTCCCTCCGTTTCAAAAT 59.058 41.667 0.00 0.00 0.00 1.82
628 664 4.320870 GTCATACTCCCTCCGTTTCAAAA 58.679 43.478 0.00 0.00 0.00 2.44
629 665 3.307199 GGTCATACTCCCTCCGTTTCAAA 60.307 47.826 0.00 0.00 0.00 2.69
630 666 2.235402 GGTCATACTCCCTCCGTTTCAA 59.765 50.000 0.00 0.00 0.00 2.69
631 667 1.829222 GGTCATACTCCCTCCGTTTCA 59.171 52.381 0.00 0.00 0.00 2.69
632 668 1.202382 CGGTCATACTCCCTCCGTTTC 60.202 57.143 0.00 0.00 36.99 2.78
633 669 0.822164 CGGTCATACTCCCTCCGTTT 59.178 55.000 0.00 0.00 36.99 3.60
634 670 0.033796 TCGGTCATACTCCCTCCGTT 60.034 55.000 0.00 0.00 41.58 4.44
635 671 0.465824 CTCGGTCATACTCCCTCCGT 60.466 60.000 0.00 0.00 41.58 4.69
636 672 1.173444 CCTCGGTCATACTCCCTCCG 61.173 65.000 0.00 0.00 42.12 4.63
637 673 0.828343 CCCTCGGTCATACTCCCTCC 60.828 65.000 0.00 0.00 0.00 4.30
638 674 0.185416 TCCCTCGGTCATACTCCCTC 59.815 60.000 0.00 0.00 0.00 4.30
639 675 0.186386 CTCCCTCGGTCATACTCCCT 59.814 60.000 0.00 0.00 0.00 4.20
640 676 0.106116 ACTCCCTCGGTCATACTCCC 60.106 60.000 0.00 0.00 0.00 4.30
641 677 2.653234 TACTCCCTCGGTCATACTCC 57.347 55.000 0.00 0.00 0.00 3.85
642 678 3.890147 ACAATACTCCCTCGGTCATACTC 59.110 47.826 0.00 0.00 0.00 2.59
643 679 3.912248 ACAATACTCCCTCGGTCATACT 58.088 45.455 0.00 0.00 0.00 2.12
644 680 4.667519 AACAATACTCCCTCGGTCATAC 57.332 45.455 0.00 0.00 0.00 2.39
645 681 4.960469 AGAAACAATACTCCCTCGGTCATA 59.040 41.667 0.00 0.00 0.00 2.15
646 682 3.775316 AGAAACAATACTCCCTCGGTCAT 59.225 43.478 0.00 0.00 0.00 3.06
647 683 3.170717 AGAAACAATACTCCCTCGGTCA 58.829 45.455 0.00 0.00 0.00 4.02
648 684 3.889520 AGAAACAATACTCCCTCGGTC 57.110 47.619 0.00 0.00 0.00 4.79
649 685 3.326880 ACAAGAAACAATACTCCCTCGGT 59.673 43.478 0.00 0.00 0.00 4.69
650 686 3.684788 CACAAGAAACAATACTCCCTCGG 59.315 47.826 0.00 0.00 0.00 4.63
651 687 4.315803 ACACAAGAAACAATACTCCCTCG 58.684 43.478 0.00 0.00 0.00 4.63
652 688 5.763204 TGAACACAAGAAACAATACTCCCTC 59.237 40.000 0.00 0.00 0.00 4.30
653 689 5.690865 TGAACACAAGAAACAATACTCCCT 58.309 37.500 0.00 0.00 0.00 4.20
654 690 6.575162 ATGAACACAAGAAACAATACTCCC 57.425 37.500 0.00 0.00 0.00 4.30
655 691 7.425606 ACAATGAACACAAGAAACAATACTCC 58.574 34.615 0.00 0.00 0.00 3.85
657 693 9.897744 CATACAATGAACACAAGAAACAATACT 57.102 29.630 0.00 0.00 0.00 2.12
658 694 9.891828 TCATACAATGAACACAAGAAACAATAC 57.108 29.630 0.00 0.00 36.11 1.89
660 696 9.414295 CATCATACAATGAACACAAGAAACAAT 57.586 29.630 0.00 0.00 43.50 2.71
661 697 7.866898 CCATCATACAATGAACACAAGAAACAA 59.133 33.333 0.00 0.00 43.50 2.83
662 698 7.230309 TCCATCATACAATGAACACAAGAAACA 59.770 33.333 0.00 0.00 43.50 2.83
663 699 7.592938 TCCATCATACAATGAACACAAGAAAC 58.407 34.615 0.00 0.00 43.50 2.78
664 700 7.757941 TCCATCATACAATGAACACAAGAAA 57.242 32.000 0.00 0.00 43.50 2.52
665 701 7.665145 TCTTCCATCATACAATGAACACAAGAA 59.335 33.333 0.00 0.00 43.50 2.52
666 702 7.167535 TCTTCCATCATACAATGAACACAAGA 58.832 34.615 0.00 0.00 43.50 3.02
667 703 7.381766 TCTTCCATCATACAATGAACACAAG 57.618 36.000 0.00 0.00 43.50 3.16
668 704 7.943079 ATCTTCCATCATACAATGAACACAA 57.057 32.000 0.00 0.00 43.50 3.33
669 705 7.943079 AATCTTCCATCATACAATGAACACA 57.057 32.000 0.00 0.00 43.50 3.72
704 740 9.142014 TCGGTCATGGAATTGGATTATTATTTT 57.858 29.630 0.00 0.00 0.00 1.82
705 741 8.576442 GTCGGTCATGGAATTGGATTATTATTT 58.424 33.333 0.00 0.00 0.00 1.40
723 759 2.264794 GTTGCCCTCGTCGGTCAT 59.735 61.111 0.00 0.00 0.00 3.06
743 780 1.003972 TGCTGCTCTTTCGTCGTTTTG 60.004 47.619 0.00 0.00 0.00 2.44
846 886 5.188194 CACGAGCTTAATTAATCGTTTCGG 58.812 41.667 19.25 8.68 45.39 4.30
1164 1212 1.153289 CTGGATGCGGAGGAGGTTG 60.153 63.158 0.00 0.00 0.00 3.77
1220 1268 5.592054 AGGAGCAAAAACAAAGCTAGAAAC 58.408 37.500 0.00 0.00 39.02 2.78
1233 1281 8.245195 ACTAGTAATTTGGAAAGGAGCAAAAA 57.755 30.769 0.00 0.00 0.00 1.94
1281 1329 8.252964 ACCTATTCGTTCTATGAAAGAAACAC 57.747 34.615 11.30 0.00 45.78 3.32
1352 1403 2.070573 ACCAAGGTGTACCAAATCCCT 58.929 47.619 3.56 0.00 38.89 4.20
1375 1426 3.560636 ATCCCTAAATTCCACCAGACG 57.439 47.619 0.00 0.00 0.00 4.18
1378 1429 7.068716 CCTTTTCTTATCCCTAAATTCCACCAG 59.931 40.741 0.00 0.00 0.00 4.00
1497 1552 3.240310 TGCATCCCTAGGAGTACCTAC 57.760 52.381 11.48 0.00 45.83 3.18
1513 1568 5.294306 CACGGTTATCACTTATCACTTGCAT 59.706 40.000 0.00 0.00 0.00 3.96
1514 1569 4.629634 CACGGTTATCACTTATCACTTGCA 59.370 41.667 0.00 0.00 0.00 4.08
1515 1570 4.868171 TCACGGTTATCACTTATCACTTGC 59.132 41.667 0.00 0.00 0.00 4.01
1516 1571 6.961359 TTCACGGTTATCACTTATCACTTG 57.039 37.500 0.00 0.00 0.00 3.16
1517 1572 6.092259 GCTTTCACGGTTATCACTTATCACTT 59.908 38.462 0.00 0.00 0.00 3.16
1518 1573 5.581085 GCTTTCACGGTTATCACTTATCACT 59.419 40.000 0.00 0.00 0.00 3.41
1519 1574 5.220605 GGCTTTCACGGTTATCACTTATCAC 60.221 44.000 0.00 0.00 0.00 3.06
1520 1575 4.873827 GGCTTTCACGGTTATCACTTATCA 59.126 41.667 0.00 0.00 0.00 2.15
1521 1576 4.272748 GGGCTTTCACGGTTATCACTTATC 59.727 45.833 0.00 0.00 0.00 1.75
1522 1577 4.196971 GGGCTTTCACGGTTATCACTTAT 58.803 43.478 0.00 0.00 0.00 1.73
1523 1578 3.602483 GGGCTTTCACGGTTATCACTTA 58.398 45.455 0.00 0.00 0.00 2.24
1529 1584 0.393808 ATGCGGGCTTTCACGGTTAT 60.394 50.000 0.00 0.00 0.00 1.89
1530 1585 0.249676 TATGCGGGCTTTCACGGTTA 59.750 50.000 0.00 0.00 0.00 2.85
1532 1587 0.466543 TATATGCGGGCTTTCACGGT 59.533 50.000 0.00 0.00 0.00 4.83
1556 1611 9.912634 ACATTCACATAAGGTTGACTTTTAATG 57.087 29.630 0.00 0.00 40.64 1.90
1654 1709 0.820891 CCTAATGATGCAAGCGGGCT 60.821 55.000 0.00 0.00 34.04 5.19
1655 1710 1.656441 CCTAATGATGCAAGCGGGC 59.344 57.895 0.00 0.00 0.00 6.13
1656 1711 0.466189 ACCCTAATGATGCAAGCGGG 60.466 55.000 0.00 0.00 36.30 6.13
1657 1712 1.873591 GTACCCTAATGATGCAAGCGG 59.126 52.381 0.00 0.00 0.00 5.52
1658 1713 2.802816 GAGTACCCTAATGATGCAAGCG 59.197 50.000 0.00 0.00 0.00 4.68
1659 1714 4.061596 GAGAGTACCCTAATGATGCAAGC 58.938 47.826 0.00 0.00 0.00 4.01
1660 1715 5.053145 GTGAGAGTACCCTAATGATGCAAG 58.947 45.833 0.00 0.00 0.00 4.01
1668 1723 4.080863 CAGCCAAAGTGAGAGTACCCTAAT 60.081 45.833 0.00 0.00 0.00 1.73
1674 1729 2.072298 CAGCAGCCAAAGTGAGAGTAC 58.928 52.381 0.00 0.00 0.00 2.73
1675 1730 1.002430 CCAGCAGCCAAAGTGAGAGTA 59.998 52.381 0.00 0.00 0.00 2.59
1676 1731 0.250640 CCAGCAGCCAAAGTGAGAGT 60.251 55.000 0.00 0.00 0.00 3.24
1677 1732 1.584380 GCCAGCAGCCAAAGTGAGAG 61.584 60.000 0.00 0.00 34.35 3.20
1678 1733 1.601759 GCCAGCAGCCAAAGTGAGA 60.602 57.895 0.00 0.00 34.35 3.27
1679 1734 2.960170 GCCAGCAGCCAAAGTGAG 59.040 61.111 0.00 0.00 34.35 3.51
1680 1735 2.979676 CGCCAGCAGCCAAAGTGA 60.980 61.111 0.00 0.00 38.78 3.41
1694 1750 0.599728 TGAGCAAAACAAATGGCGCC 60.600 50.000 22.73 22.73 0.00 6.53
1695 1751 1.431496 ATGAGCAAAACAAATGGCGC 58.569 45.000 0.00 0.00 0.00 6.53
1718 1774 7.943079 ACTCCATCATGAATTCACATGTTAA 57.057 32.000 20.35 0.00 45.21 2.01
1719 1775 7.629008 GCAACTCCATCATGAATTCACATGTTA 60.629 37.037 20.35 11.73 45.21 2.41
1747 1815 0.976641 CCACCTCAGCTCAGTAACCA 59.023 55.000 0.00 0.00 0.00 3.67
1753 1821 0.617413 ACAATCCCACCTCAGCTCAG 59.383 55.000 0.00 0.00 0.00 3.35
1765 1833 1.693606 CCCAATATGGCCAACAATCCC 59.306 52.381 10.96 0.00 35.79 3.85
1786 1854 0.037303 CTTGACCATCCACCACAGCT 59.963 55.000 0.00 0.00 0.00 4.24
1791 1859 0.478072 AGCAACTTGACCATCCACCA 59.522 50.000 0.00 0.00 0.00 4.17
1807 1875 5.664294 AATTTAATGGACAATGAGCAGCA 57.336 34.783 0.00 0.00 0.00 4.41
1815 1883 8.618702 TCATGCAAACAAATTTAATGGACAAT 57.381 26.923 0.00 0.00 0.00 2.71
1838 1906 1.543208 GGTCACAATGTCACCAGCTCA 60.543 52.381 0.28 0.00 0.00 4.26
1861 1929 4.124238 GTGTAGAACCAACAACAGCACTA 58.876 43.478 0.00 0.00 0.00 2.74
1863 1931 2.943033 AGTGTAGAACCAACAACAGCAC 59.057 45.455 0.00 0.00 0.00 4.40
1871 1939 2.621526 CCAAACCCAGTGTAGAACCAAC 59.378 50.000 0.00 0.00 0.00 3.77
1884 1952 1.654159 TACCATACCGACCAAACCCA 58.346 50.000 0.00 0.00 0.00 4.51
1893 1961 3.554934 ACGGACTACAATACCATACCGA 58.445 45.455 0.00 0.00 41.30 4.69
1900 1968 2.033424 GGGACGTACGGACTACAATACC 59.967 54.545 21.06 1.59 0.00 2.73
1913 1985 0.526662 CTGACACCAGAGGGACGTAC 59.473 60.000 0.00 0.00 43.02 3.67
1916 1988 1.185618 TTCCTGACACCAGAGGGACG 61.186 60.000 0.00 0.00 43.02 4.79
1937 2012 7.062138 GGTTGTTATGCATGATGTTACTTTGTG 59.938 37.037 10.16 0.00 0.00 3.33
1946 2021 4.207165 GGTAGGGTTGTTATGCATGATGT 58.793 43.478 10.16 0.00 0.00 3.06
1990 2065 4.407296 TCACAATTTGCCTACCCTTTTTGT 59.593 37.500 0.00 0.00 0.00 2.83
1999 2074 2.231235 CCAGGGTTCACAATTTGCCTAC 59.769 50.000 0.00 0.00 0.00 3.18
2029 2104 8.766994 ACCTGTTGCCAAGTTTATTATGATAT 57.233 30.769 0.00 0.00 0.00 1.63
2030 2105 8.588290 AACCTGTTGCCAAGTTTATTATGATA 57.412 30.769 0.00 0.00 0.00 2.15
2068 2143 6.971184 GCAATTGACATATTGAAGGTGAAGAG 59.029 38.462 10.34 0.00 37.65 2.85
2104 2179 3.962557 CCTGCTAGGGTGGAGGAG 58.037 66.667 0.00 0.00 46.72 3.69
2115 2190 0.984961 AGCATCCAGAAGCCCTGCTA 60.985 55.000 0.00 0.00 41.15 3.49
2117 2192 2.119655 CAGCATCCAGAAGCCCTGC 61.120 63.158 0.00 0.00 41.57 4.85
2118 2193 2.119655 GCAGCATCCAGAAGCCCTG 61.120 63.158 0.00 0.00 42.55 4.45
2119 2194 1.934459 ATGCAGCATCCAGAAGCCCT 61.934 55.000 0.52 0.00 0.00 5.19
2120 2195 0.179009 TATGCAGCATCCAGAAGCCC 60.179 55.000 12.38 0.00 0.00 5.19
2121 2196 1.683943 TTATGCAGCATCCAGAAGCC 58.316 50.000 12.38 0.00 0.00 4.35
2122 2197 3.190118 GGTATTATGCAGCATCCAGAAGC 59.810 47.826 12.38 0.59 0.00 3.86
2123 2198 3.755378 GGGTATTATGCAGCATCCAGAAG 59.245 47.826 12.38 0.00 0.00 2.85
2124 2199 3.138098 TGGGTATTATGCAGCATCCAGAA 59.862 43.478 12.38 0.23 0.00 3.02
2125 2200 2.710471 TGGGTATTATGCAGCATCCAGA 59.290 45.455 12.38 0.00 0.00 3.86
2126 2201 3.079578 CTGGGTATTATGCAGCATCCAG 58.920 50.000 20.25 20.25 35.27 3.86
2127 2202 2.710471 TCTGGGTATTATGCAGCATCCA 59.290 45.455 12.38 11.73 0.00 3.41
2128 2203 3.423539 TCTGGGTATTATGCAGCATCC 57.576 47.619 12.38 6.74 0.00 3.51
2129 2204 5.972107 AATTCTGGGTATTATGCAGCATC 57.028 39.130 12.38 0.00 0.00 3.91
2130 2205 6.736110 AAAATTCTGGGTATTATGCAGCAT 57.264 33.333 13.73 13.73 0.00 3.79
2131 2206 7.838079 ATAAAATTCTGGGTATTATGCAGCA 57.162 32.000 0.00 0.00 0.00 4.41
2132 2207 8.792633 TGTATAAAATTCTGGGTATTATGCAGC 58.207 33.333 0.00 0.00 29.36 5.25
2140 2215 9.936329 AGACCATTTGTATAAAATTCTGGGTAT 57.064 29.630 7.10 0.00 30.14 2.73
2141 2216 9.184523 CAGACCATTTGTATAAAATTCTGGGTA 57.815 33.333 7.10 0.00 32.19 3.69
2142 2217 7.673926 ACAGACCATTTGTATAAAATTCTGGGT 59.326 33.333 17.45 8.44 35.93 4.51
2143 2218 8.066612 ACAGACCATTTGTATAAAATTCTGGG 57.933 34.615 17.45 6.28 35.93 4.45
2166 2241 1.575419 AGGGTTTCGGGCAGTATACA 58.425 50.000 5.50 0.00 0.00 2.29
2177 2252 5.835113 AATGAATTGATGGTAGGGTTTCG 57.165 39.130 0.00 0.00 0.00 3.46
2180 2255 7.738437 AATGAAATGAATTGATGGTAGGGTT 57.262 32.000 0.00 0.00 0.00 4.11
2241 2318 2.128771 TTTATCCTTCAGGCTGTGGC 57.871 50.000 15.27 0.00 37.82 5.01
2285 2362 2.368878 GGCTTGGGGAGGGAGGAT 60.369 66.667 0.00 0.00 0.00 3.24
2293 2370 0.482446 ACTGTTTGATGGCTTGGGGA 59.518 50.000 0.00 0.00 0.00 4.81
2294 2371 0.604578 CACTGTTTGATGGCTTGGGG 59.395 55.000 0.00 0.00 0.00 4.96
2295 2372 1.619654 TCACTGTTTGATGGCTTGGG 58.380 50.000 0.00 0.00 0.00 4.12
2348 2425 2.616842 ACCATATCGATTTTGTTCGCCC 59.383 45.455 1.71 0.00 38.97 6.13
2350 2427 5.797934 TCAAAACCATATCGATTTTGTTCGC 59.202 36.000 16.57 0.00 41.77 4.70
2359 2436 5.163205 TGTCAGGGATCAAAACCATATCGAT 60.163 40.000 2.16 2.16 0.00 3.59
2361 2438 4.273480 GTGTCAGGGATCAAAACCATATCG 59.727 45.833 0.00 0.00 0.00 2.92
2398 2475 0.772124 AAGAGGAACTGCCAAGGGGA 60.772 55.000 0.00 0.00 41.55 4.81
2437 2514 8.184192 CACTGGCAAATCTTCGATAATAAACTT 58.816 33.333 0.00 0.00 0.00 2.66
2454 2531 4.751767 ACAAGATTTTTCCACTGGCAAA 57.248 36.364 0.00 0.00 0.00 3.68
2462 2539 9.898152 AACCAAATAAAGAACAAGATTTTTCCA 57.102 25.926 0.00 0.00 0.00 3.53
2496 2573 1.490490 ACAGAATGGTCAGTGTGTGGT 59.510 47.619 0.57 0.00 43.62 4.16
2523 2600 5.538813 TCCTTCTACAGAAAGTGAGCAGTTA 59.461 40.000 0.00 0.00 33.07 2.24
2560 2637 9.632807 CTCGGGACTAGAGAAAATAATAATGAG 57.367 37.037 0.00 0.00 37.93 2.90
2600 2677 4.589908 ACAGGTTGGAGGATGTGTAATTC 58.410 43.478 0.00 0.00 0.00 2.17
2609 2686 7.392766 TGATTTGATATACAGGTTGGAGGAT 57.607 36.000 0.00 0.00 0.00 3.24
2631 2708 8.333235 AGGTTATTAGGTTAACATGTGGAATGA 58.667 33.333 8.10 0.00 34.42 2.57
2695 2772 4.009675 GTGGTTGATTGTTGCTAGGATGA 58.990 43.478 0.00 0.00 0.00 2.92
2745 2822 7.508687 ACATGCCAGTATTCACTATCATGTAA 58.491 34.615 16.05 0.00 45.34 2.41
2748 2825 6.930722 TGTACATGCCAGTATTCACTATCATG 59.069 38.462 12.79 12.79 42.92 3.07
2755 2832 4.261801 AGGTTGTACATGCCAGTATTCAC 58.738 43.478 16.31 0.00 0.00 3.18
2766 2843 7.497595 TGGTAGAGCTATAAAGGTTGTACATG 58.502 38.462 0.00 0.00 32.30 3.21
2813 2890 1.200948 GGGATTGCACTGACAAAGCTC 59.799 52.381 0.00 0.00 32.27 4.09
2817 2894 3.295093 TCAAAGGGATTGCACTGACAAA 58.705 40.909 0.00 0.00 38.98 2.83
2826 2903 4.636206 ACGAGATTAACTCAAAGGGATTGC 59.364 41.667 0.00 0.00 45.14 3.56
2827 2904 6.743575 AACGAGATTAACTCAAAGGGATTG 57.256 37.500 0.00 0.00 45.14 2.67
2831 2908 5.238650 ACACAAACGAGATTAACTCAAAGGG 59.761 40.000 0.00 0.00 45.14 3.95
2835 2912 8.596271 TTATCACACAAACGAGATTAACTCAA 57.404 30.769 0.00 0.00 45.14 3.02
2922 2999 9.125026 AGAGTTTTCTGTGAAGATGTGTAAAAT 57.875 29.630 0.00 0.00 30.72 1.82
2927 3004 6.821388 ACTAGAGTTTTCTGTGAAGATGTGT 58.179 36.000 0.00 0.00 34.79 3.72
3009 3086 3.111484 ACCACCCAAATCAAACAACCTT 58.889 40.909 0.00 0.00 0.00 3.50
3159 3236 6.424509 TGTTGATTTTTGCATCTTCATGGTTC 59.575 34.615 0.00 0.00 0.00 3.62
3681 3758 7.147949 CCACAATAATTTGGAGCTGAGAAGATT 60.148 37.037 0.00 0.00 37.15 2.40
3702 3779 5.104277 ACCTACATTATCGAATTCCCCACAA 60.104 40.000 0.00 0.00 0.00 3.33
3804 3881 9.990360 TTTACCTTATTTGGGATTTGTCTTTTC 57.010 29.630 0.00 0.00 0.00 2.29
3816 3893 7.881775 AGCTAGTTGATTTACCTTATTTGGG 57.118 36.000 0.00 0.00 0.00 4.12
3834 3911 8.658619 AGAATATGAATCCAATCTGAAGCTAGT 58.341 33.333 0.00 0.00 0.00 2.57
3837 3914 8.658619 AGTAGAATATGAATCCAATCTGAAGCT 58.341 33.333 0.00 0.00 0.00 3.74
3872 3949 2.486472 ATCTCCACAGGCTCAACTTG 57.514 50.000 0.00 0.00 0.00 3.16
3880 3957 6.767902 TGATAAAACATTCTATCTCCACAGGC 59.232 38.462 0.00 0.00 0.00 4.85
3940 4098 7.586747 TCCGTTTTGTAAATCATGGTTTCTAC 58.413 34.615 7.35 2.19 0.00 2.59
3954 4112 7.640852 TCATCGAATTTTCTTCCGTTTTGTAA 58.359 30.769 0.00 0.00 0.00 2.41
3955 4113 7.192148 TCATCGAATTTTCTTCCGTTTTGTA 57.808 32.000 0.00 0.00 0.00 2.41
3958 4116 9.289303 CATTATCATCGAATTTTCTTCCGTTTT 57.711 29.630 0.00 0.00 0.00 2.43
3964 4122 7.802251 CAGAGGCATTATCATCGAATTTTCTTC 59.198 37.037 0.00 0.00 0.00 2.87
4000 4158 0.395586 ACCAGCAAACCACAGCAGAA 60.396 50.000 0.00 0.00 0.00 3.02
4030 4188 2.225019 GCGGATGACTGGATTATGCAAG 59.775 50.000 0.00 0.00 0.00 4.01
4061 4219 5.003160 ACTGTGCAGCTATTGTATGTTCAA 58.997 37.500 0.00 0.00 0.00 2.69
4101 4259 9.956720 CGAGATGGCATTAGAATTTAGAATTTT 57.043 29.630 0.00 0.00 0.00 1.82
4102 4260 9.125026 ACGAGATGGCATTAGAATTTAGAATTT 57.875 29.630 0.00 0.00 0.00 1.82
4103 4261 8.682936 ACGAGATGGCATTAGAATTTAGAATT 57.317 30.769 0.00 0.00 0.00 2.17
4104 4262 8.562892 CAACGAGATGGCATTAGAATTTAGAAT 58.437 33.333 0.00 0.00 0.00 2.40
4114 4272 2.679837 AGCAACAACGAGATGGCATTAG 59.320 45.455 0.00 0.00 0.00 1.73
4128 4286 5.181811 CCTCATGAACATACAGAAGCAACAA 59.818 40.000 0.00 0.00 0.00 2.83
4133 4291 6.500684 TTTTCCTCATGAACATACAGAAGC 57.499 37.500 0.00 0.00 31.05 3.86
4161 4319 3.447586 GCTCTCTGTGGTAGTGTTATCCA 59.552 47.826 0.00 0.00 0.00 3.41
4166 4324 1.617322 TCGCTCTCTGTGGTAGTGTT 58.383 50.000 0.00 0.00 0.00 3.32
4214 4372 8.640063 TCTTGATCAAAGATTGAATGAAGGAA 57.360 30.769 9.88 0.00 43.95 3.36
4267 4425 9.601217 AAGTGTACTGTAATAGTTGATGGAATC 57.399 33.333 0.00 0.00 41.56 2.52
4268 4426 9.959721 AAAGTGTACTGTAATAGTTGATGGAAT 57.040 29.630 0.00 0.00 40.89 3.01
4286 4444 4.251268 CTGGTTGGGTAGCTAAAGTGTAC 58.749 47.826 0.00 0.00 0.00 2.90
4287 4445 3.905591 ACTGGTTGGGTAGCTAAAGTGTA 59.094 43.478 0.00 0.00 0.00 2.90
4288 4446 2.709397 ACTGGTTGGGTAGCTAAAGTGT 59.291 45.455 0.00 0.00 0.00 3.55
4289 4447 3.418684 ACTGGTTGGGTAGCTAAAGTG 57.581 47.619 0.00 0.00 0.00 3.16
4290 4448 4.019591 CCTAACTGGTTGGGTAGCTAAAGT 60.020 45.833 7.56 0.00 36.58 2.66
4291 4449 4.514401 CCTAACTGGTTGGGTAGCTAAAG 58.486 47.826 7.56 0.00 36.58 1.85
4328 5668 1.630878 CTGTGAAGTTTCCCTAGGCCT 59.369 52.381 11.78 11.78 0.00 5.19
4349 5689 3.939592 CGAGTAGGTCGCCATGATATCTA 59.060 47.826 3.98 0.00 43.03 1.98
4368 5708 5.929992 TCATCAACTAAACAAACCTACCGAG 59.070 40.000 0.00 0.00 0.00 4.63
4369 5709 5.856156 TCATCAACTAAACAAACCTACCGA 58.144 37.500 0.00 0.00 0.00 4.69
4371 5711 7.739498 TTCTCATCAACTAAACAAACCTACC 57.261 36.000 0.00 0.00 0.00 3.18
4417 5757 3.568007 GTGTTTGTGGGAATAGCTCAACA 59.432 43.478 0.00 0.00 0.00 3.33
4446 5786 7.015098 CAGTCCTGGAGTACTAATCATTCTGAT 59.985 40.741 3.17 0.00 39.09 2.90
4454 5794 4.946478 ATGCAGTCCTGGAGTACTAATC 57.054 45.455 3.17 0.00 33.50 1.75
4456 5796 5.105064 GGTTAATGCAGTCCTGGAGTACTAA 60.105 44.000 3.17 0.00 31.60 2.24
4462 5802 1.561542 AGGGTTAATGCAGTCCTGGAG 59.438 52.381 0.00 0.00 33.50 3.86
4464 5804 2.369394 GAAGGGTTAATGCAGTCCTGG 58.631 52.381 0.00 0.00 0.00 4.45
4466 5806 1.992557 TGGAAGGGTTAATGCAGTCCT 59.007 47.619 0.00 0.00 0.00 3.85
4472 5874 4.935352 TGCATATTGGAAGGGTTAATGC 57.065 40.909 0.00 0.00 38.90 3.56
4510 5912 5.939764 AGTAGCTATTTGATGGTCACAGA 57.060 39.130 0.00 0.00 0.00 3.41
4517 5919 7.712639 AGTTCACATGTAGTAGCTATTTGATGG 59.287 37.037 0.00 0.00 0.00 3.51
4525 5927 5.512298 TGGGTAGTTCACATGTAGTAGCTA 58.488 41.667 0.00 0.00 0.00 3.32
4526 5928 4.350245 TGGGTAGTTCACATGTAGTAGCT 58.650 43.478 0.00 0.00 0.00 3.32
4527 5929 4.730949 TGGGTAGTTCACATGTAGTAGC 57.269 45.455 0.00 0.92 0.00 3.58
4528 5930 6.525578 TCTTGGGTAGTTCACATGTAGTAG 57.474 41.667 0.00 0.00 0.00 2.57
4529 5931 6.629515 GCATCTTGGGTAGTTCACATGTAGTA 60.630 42.308 0.00 0.00 0.00 1.82
4530 5932 5.734720 CATCTTGGGTAGTTCACATGTAGT 58.265 41.667 0.00 0.00 0.00 2.73
4615 6066 8.281531 ACATCTTATATTTGTGAATGGAGGGAA 58.718 33.333 0.00 0.00 0.00 3.97
4758 6292 3.767309 ATCTGGTGAAGTACTCCCTCT 57.233 47.619 0.00 0.00 0.00 3.69
4782 6316 7.144000 GCCTTCAAATCATACATTTGAGATCC 58.856 38.462 9.16 0.00 45.29 3.36
4783 6317 7.709947 TGCCTTCAAATCATACATTTGAGATC 58.290 34.615 9.16 0.00 45.29 2.75
4784 6318 7.649533 TGCCTTCAAATCATACATTTGAGAT 57.350 32.000 9.16 0.00 45.29 2.75
4785 6319 7.039853 TGTTGCCTTCAAATCATACATTTGAGA 60.040 33.333 9.16 2.53 45.29 3.27
4787 6321 6.990798 TGTTGCCTTCAAATCATACATTTGA 58.009 32.000 5.79 5.79 43.71 2.69
4792 6326 5.769662 AGTTCTGTTGCCTTCAAATCATACA 59.230 36.000 0.00 0.00 33.37 2.29
4834 6375 1.895131 CCAATTGCTGGCTGTTAAGGT 59.105 47.619 0.00 0.00 38.76 3.50
4835 6376 1.205417 CCCAATTGCTGGCTGTTAAGG 59.795 52.381 0.00 0.00 44.90 2.69
4851 6393 0.846427 AGATCAGGCACTTCCCCCAA 60.846 55.000 0.00 0.00 34.60 4.12
4852 6394 1.229951 AGATCAGGCACTTCCCCCA 60.230 57.895 0.00 0.00 34.60 4.96
4874 6416 9.265862 TGGTAATATTGAAGGAATTGGATGTTT 57.734 29.630 0.00 0.00 0.00 2.83
4882 6424 8.416329 GCTGACAATGGTAATATTGAAGGAATT 58.584 33.333 0.00 0.00 39.79 2.17
4898 6440 0.745845 CCCCTTCGAGCTGACAATGG 60.746 60.000 0.00 0.00 0.00 3.16
4902 6444 2.203788 ACCCCCTTCGAGCTGACA 60.204 61.111 0.00 0.00 0.00 3.58
5036 6578 5.938125 GGCCTAATTCTGTACAGAGAAAACA 59.062 40.000 23.97 10.18 38.88 2.83
5189 6734 3.914312 AGACGTCACCTCACAAACATAG 58.086 45.455 19.50 0.00 0.00 2.23
5201 6746 0.307760 CAAGTTGGCAAGACGTCACC 59.692 55.000 19.50 16.09 0.00 4.02
5209 6754 4.096382 ACAAGTGTAGAACAAGTTGGCAAG 59.904 41.667 7.96 0.00 31.85 4.01
5212 6757 4.814771 AGTACAAGTGTAGAACAAGTTGGC 59.185 41.667 7.96 0.00 31.85 4.52
5236 6781 9.121658 CAGACCACAAGATTGTAGTAGTAGATA 57.878 37.037 0.00 0.00 39.91 1.98
5237 6782 7.616150 ACAGACCACAAGATTGTAGTAGTAGAT 59.384 37.037 0.00 0.00 39.91 1.98
5238 6783 6.946583 ACAGACCACAAGATTGTAGTAGTAGA 59.053 38.462 0.00 0.00 39.91 2.59
5239 6784 7.030165 CACAGACCACAAGATTGTAGTAGTAG 58.970 42.308 0.00 0.00 39.91 2.57
5240 6785 6.717997 TCACAGACCACAAGATTGTAGTAGTA 59.282 38.462 0.00 0.00 39.91 1.82
5241 6786 5.538813 TCACAGACCACAAGATTGTAGTAGT 59.461 40.000 0.00 0.00 39.91 2.73
5242 6787 6.025749 TCACAGACCACAAGATTGTAGTAG 57.974 41.667 0.00 0.00 39.91 2.57
5244 6789 4.262635 CCTCACAGACCACAAGATTGTAGT 60.263 45.833 0.00 0.00 39.91 2.73
5319 6961 6.017687 CCAAATTTGAGCGATGATGATGAGTA 60.018 38.462 19.86 0.00 0.00 2.59
5320 6962 5.220989 CCAAATTTGAGCGATGATGATGAGT 60.221 40.000 19.86 0.00 0.00 3.41
5321 6963 5.212934 CCAAATTTGAGCGATGATGATGAG 58.787 41.667 19.86 0.00 0.00 2.90
5322 6964 4.641541 ACCAAATTTGAGCGATGATGATGA 59.358 37.500 19.86 0.00 0.00 2.92
5323 6965 4.738252 CACCAAATTTGAGCGATGATGATG 59.262 41.667 19.86 0.57 0.00 3.07
5324 6966 4.641541 TCACCAAATTTGAGCGATGATGAT 59.358 37.500 19.86 0.00 0.00 2.45
5325 6967 4.009002 TCACCAAATTTGAGCGATGATGA 58.991 39.130 19.86 6.92 0.00 2.92
5326 6968 4.359971 TCACCAAATTTGAGCGATGATG 57.640 40.909 19.86 1.99 0.00 3.07
5327 6969 5.047802 ACTTTCACCAAATTTGAGCGATGAT 60.048 36.000 19.86 0.00 0.00 2.45
5328 6970 4.278170 ACTTTCACCAAATTTGAGCGATGA 59.722 37.500 19.86 11.23 0.00 2.92
5329 6971 4.549458 ACTTTCACCAAATTTGAGCGATG 58.451 39.130 19.86 9.29 0.00 3.84
5330 6972 4.613622 CGACTTTCACCAAATTTGAGCGAT 60.614 41.667 19.86 0.00 0.00 4.58
5331 6973 3.303725 CGACTTTCACCAAATTTGAGCGA 60.304 43.478 19.86 9.51 0.00 4.93
5332 6974 2.973224 CGACTTTCACCAAATTTGAGCG 59.027 45.455 19.86 11.49 0.00 5.03
5333 6975 2.726241 GCGACTTTCACCAAATTTGAGC 59.274 45.455 19.86 6.75 0.00 4.26
5334 6976 3.243367 TGGCGACTTTCACCAAATTTGAG 60.243 43.478 19.86 10.60 0.00 3.02
5335 6977 2.690497 TGGCGACTTTCACCAAATTTGA 59.310 40.909 19.86 0.00 0.00 2.69
5336 6978 3.090952 TGGCGACTTTCACCAAATTTG 57.909 42.857 11.40 11.40 0.00 2.32
5337 6979 3.132111 AGTTGGCGACTTTCACCAAATTT 59.868 39.130 0.18 0.00 39.93 1.82
5338 6980 2.693074 AGTTGGCGACTTTCACCAAATT 59.307 40.909 0.18 0.00 39.93 1.82
5339 6981 2.306847 AGTTGGCGACTTTCACCAAAT 58.693 42.857 0.18 0.00 39.93 2.32
5340 6982 1.757682 AGTTGGCGACTTTCACCAAA 58.242 45.000 0.18 0.00 39.93 3.28
5341 6983 2.158871 AGTAGTTGGCGACTTTCACCAA 60.159 45.455 13.65 0.00 36.33 3.67
5342 6984 1.414919 AGTAGTTGGCGACTTTCACCA 59.585 47.619 13.65 0.00 39.86 4.17
5343 6985 1.798813 CAGTAGTTGGCGACTTTCACC 59.201 52.381 13.65 0.00 39.86 4.02
5344 6986 2.480845 ACAGTAGTTGGCGACTTTCAC 58.519 47.619 13.65 5.42 39.86 3.18
5345 6987 2.902705 ACAGTAGTTGGCGACTTTCA 57.097 45.000 13.65 0.00 39.86 2.69
5346 6988 5.444218 CGAAATACAGTAGTTGGCGACTTTC 60.444 44.000 13.65 7.82 39.86 2.62
5347 6989 4.387862 CGAAATACAGTAGTTGGCGACTTT 59.612 41.667 13.65 0.00 39.86 2.66
5348 6990 3.924686 CGAAATACAGTAGTTGGCGACTT 59.075 43.478 13.65 0.00 39.86 3.01
5349 6991 3.508762 CGAAATACAGTAGTTGGCGACT 58.491 45.455 12.92 12.92 42.55 4.18
5350 6992 2.601763 CCGAAATACAGTAGTTGGCGAC 59.398 50.000 0.00 0.00 0.00 5.19
5351 6993 2.883574 CCGAAATACAGTAGTTGGCGA 58.116 47.619 0.00 0.00 0.00 5.54
5352 6994 1.326548 GCCGAAATACAGTAGTTGGCG 59.673 52.381 14.36 6.66 0.00 5.69
5353 6995 2.352388 TGCCGAAATACAGTAGTTGGC 58.648 47.619 19.16 19.16 41.56 4.52
5357 6999 3.938963 CACCATTGCCGAAATACAGTAGT 59.061 43.478 0.00 0.00 0.00 2.73
5394 7036 3.251004 ACGTGAGCTTGAAAATGAACTCC 59.749 43.478 0.00 0.00 0.00 3.85
5400 7042 1.531149 ACCGACGTGAGCTTGAAAATG 59.469 47.619 0.00 0.00 0.00 2.32
5421 7063 3.525537 CGCATAATCAGTGGGGCTATAG 58.474 50.000 0.00 0.00 0.00 1.31
5425 7067 1.526917 GCGCATAATCAGTGGGGCT 60.527 57.895 0.30 0.00 36.42 5.19
5493 7135 2.977456 GACACGTGCCATGCCACA 60.977 61.111 17.22 0.00 35.47 4.17
5504 7146 0.388649 GTTGAGATCGCCAGACACGT 60.389 55.000 0.00 0.00 0.00 4.49
5507 7149 0.684535 TTGGTTGAGATCGCCAGACA 59.315 50.000 0.00 0.00 33.41 3.41
5508 7150 1.808411 TTTGGTTGAGATCGCCAGAC 58.192 50.000 0.00 0.00 33.41 3.51
5518 7160 3.199880 AGCCCGATAGATTTGGTTGAG 57.800 47.619 0.00 0.00 39.76 3.02
5529 7171 3.771577 ATTTTGTCCCTAGCCCGATAG 57.228 47.619 0.00 0.00 0.00 2.08
5538 7180 8.698973 TTGATGTTTCTGTTATTTTGTCCCTA 57.301 30.769 0.00 0.00 0.00 3.53
5549 7191 6.931838 ACGACTCCTATTGATGTTTCTGTTA 58.068 36.000 0.00 0.00 0.00 2.41
5567 7210 0.248949 GGAAGCGGGTGATACGACTC 60.249 60.000 0.00 0.00 0.00 3.36
5604 7247 6.024049 GCAGATGGATTTCTTTAAGTTCGTG 58.976 40.000 0.00 0.00 0.00 4.35
5605 7248 5.705441 TGCAGATGGATTTCTTTAAGTTCGT 59.295 36.000 0.00 0.00 0.00 3.85
5612 7255 7.943079 TCAATTCTGCAGATGGATTTCTTTA 57.057 32.000 19.04 0.00 0.00 1.85
5621 7264 5.357314 AGTGAATCTTCAATTCTGCAGATGG 59.643 40.000 19.04 10.23 35.93 3.51
5634 7277 4.654915 TCATTGCTCCAAGTGAATCTTCA 58.345 39.130 0.00 0.00 33.63 3.02
5662 7305 0.696501 TTTGCAGAGGGTAGGGTTCC 59.303 55.000 0.00 0.00 0.00 3.62
5665 7308 1.073923 CAAGTTTGCAGAGGGTAGGGT 59.926 52.381 0.00 0.00 0.00 4.34
5672 7315 3.904136 AACGAATCAAGTTTGCAGAGG 57.096 42.857 0.00 0.00 0.00 3.69
5693 7336 0.598680 CCCATTCCGCGTTGCAAAAA 60.599 50.000 4.92 0.00 0.00 1.94
5696 7339 2.281831 TCCCATTCCGCGTTGCAA 60.282 55.556 4.92 0.00 0.00 4.08
5708 7351 2.693074 GTTGTTGAAGGTTGTGTCCCAT 59.307 45.455 0.00 0.00 0.00 4.00
5756 7399 2.048127 GGACAGTGGTCGGTCAGC 60.048 66.667 0.00 0.00 45.28 4.26
5760 7403 0.759436 AAGAGTGGACAGTGGTCGGT 60.759 55.000 0.00 0.00 45.28 4.69
5774 7417 2.354906 CCTCTCATCAGCAAGCAAGAGT 60.355 50.000 0.00 0.00 0.00 3.24
5838 7486 6.524734 ACGACATCATTGAATCTAGGCATAA 58.475 36.000 0.00 0.00 0.00 1.90
5839 7487 6.101650 ACGACATCATTGAATCTAGGCATA 57.898 37.500 0.00 0.00 0.00 3.14
5846 7494 4.743057 TGAGGACGACATCATTGAATCT 57.257 40.909 0.00 0.00 31.79 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.