Multiple sequence alignment - TraesCS1A01G095200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G095200 chr1A 100.000 8360 0 0 1 8360 91051159 91059518 0.000000e+00 15439.0
1 TraesCS1A01G095200 chr1B 94.509 6065 242 38 516 6544 148442809 148436800 0.000000e+00 9271.0
2 TraesCS1A01G095200 chr1B 94.728 1764 67 10 6588 8344 148436813 148435069 0.000000e+00 2719.0
3 TraesCS1A01G095200 chr1B 79.730 518 71 14 5 497 148469503 148468995 2.230000e-90 344.0
4 TraesCS1A01G095200 chr1B 98.630 73 1 0 1872 1944 642706551 642706479 6.810000e-26 130.0
5 TraesCS1A01G095200 chr1B 80.833 120 22 1 605 723 120889505 120889386 8.930000e-15 93.5
6 TraesCS1A01G095200 chr1D 95.594 5742 182 28 830 6544 93120201 93114504 0.000000e+00 9136.0
7 TraesCS1A01G095200 chr1D 93.820 1780 72 15 6588 8360 93114517 93112769 0.000000e+00 2643.0
8 TraesCS1A01G095200 chr1D 84.746 118 17 1 607 723 12008669 12008552 5.300000e-22 117.0
9 TraesCS1A01G095200 chr1D 90.141 71 7 0 5 75 93121881 93121811 8.930000e-15 93.5
10 TraesCS1A01G095200 chr3A 81.985 272 30 9 2996 3249 174379840 174379570 6.570000e-51 213.0
11 TraesCS1A01G095200 chr3A 97.333 75 2 0 1870 1944 182633732 182633806 2.450000e-25 128.0
12 TraesCS1A01G095200 chr7A 82.609 253 29 7 2996 3234 722273935 722274186 8.500000e-50 209.0
13 TraesCS1A01G095200 chr6A 98.630 73 1 0 1872 1944 132155628 132155556 6.810000e-26 130.0
14 TraesCS1A01G095200 chr6A 90.110 91 8 1 1854 1944 178446459 178446548 5.300000e-22 117.0
15 TraesCS1A01G095200 chr4B 79.775 178 33 2 549 723 455413739 455413562 8.810000e-25 126.0
16 TraesCS1A01G095200 chr4B 91.765 85 5 2 1860 1944 249050037 249050119 5.300000e-22 117.0
17 TraesCS1A01G095200 chr5A 93.902 82 3 2 1875 1956 606705412 606705491 1.140000e-23 122.0
18 TraesCS1A01G095200 chr5A 81.148 122 17 4 607 723 131806291 131806171 8.930000e-15 93.5
19 TraesCS1A01G095200 chr2B 96.053 76 2 1 1870 1944 535506442 535506367 1.140000e-23 122.0
20 TraesCS1A01G095200 chr2B 79.528 127 18 5 599 719 592497482 592497606 5.380000e-12 84.2
21 TraesCS1A01G095200 chr2B 79.661 118 20 4 610 723 382253921 382253804 1.930000e-11 82.4
22 TraesCS1A01G095200 chr2B 88.679 53 6 0 436 488 114373878 114373930 1.950000e-06 65.8
23 TraesCS1A01G095200 chr6D 82.946 129 18 3 599 723 315366011 315366139 6.860000e-21 113.0
24 TraesCS1A01G095200 chr3B 77.717 184 37 3 549 729 749051232 749051414 8.870000e-20 110.0
25 TraesCS1A01G095200 chr6B 76.882 186 35 8 545 723 512170297 512170113 1.920000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G095200 chr1A 91051159 91059518 8359 False 15439.0 15439 100.0000 1 8360 1 chr1A.!!$F1 8359
1 TraesCS1A01G095200 chr1B 148435069 148442809 7740 True 5995.0 9271 94.6185 516 8344 2 chr1B.!!$R4 7828
2 TraesCS1A01G095200 chr1B 148468995 148469503 508 True 344.0 344 79.7300 5 497 1 chr1B.!!$R2 492
3 TraesCS1A01G095200 chr1D 93112769 93121881 9112 True 3957.5 9136 93.1850 5 8360 3 chr1D.!!$R2 8355

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 215 0.107459 GCTTCAGGACCTGGTGATCC 60.107 60.000 21.56 0.00 34.98 3.36 F
405 466 0.179134 GTGGATCTCGACCCTTGACG 60.179 60.000 0.00 0.00 0.00 4.35 F
609 726 0.249120 TCCGTGCATCTACTGGTTGG 59.751 55.000 0.00 0.00 0.00 3.77 F
1217 2181 0.370273 GTGCTGCGAATCTGTAACCG 59.630 55.000 0.00 0.00 0.00 4.44 F
1555 2519 1.734465 GAGTAAGACACTGGCACATGC 59.266 52.381 0.00 0.00 37.72 4.06 F
2669 3643 1.175983 TTTCCGCACAACCATGGACC 61.176 55.000 21.47 0.25 0.00 4.46 F
3516 4490 1.133025 CGCCCCTTAATCAGCAAACAG 59.867 52.381 0.00 0.00 0.00 3.16 F
4943 5954 1.094785 AAGCCGTCAATTAATGCGCT 58.905 45.000 9.73 0.00 0.00 5.92 F
6454 7474 2.451490 TGTTCTTTTGCTTCACCACCA 58.549 42.857 0.00 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1198 2162 0.370273 CGGTTACAGATTCGCAGCAC 59.630 55.000 0.00 0.00 0.00 4.40 R
1295 2259 0.696501 GGAAACAAGTCCCCTGGCTA 59.303 55.000 0.00 0.00 0.00 3.93 R
2199 3165 1.153086 GCCAGGCCATGTCCTACAG 60.153 63.158 5.01 0.00 33.95 2.74 R
2654 3628 0.802494 GTTAGGTCCATGGTTGTGCG 59.198 55.000 12.58 0.00 0.00 5.34 R
2754 3728 1.070376 CACATCAGATAATGCACGCCG 60.070 52.381 0.00 0.00 0.00 6.46 R
3918 4920 1.067669 TGAGCCGATTCATTCTCCTCG 59.932 52.381 0.00 0.00 0.00 4.63 R
5324 6339 2.198827 CCAAACAGTGGCATCCTACA 57.801 50.000 0.00 0.00 41.72 2.74 R
6573 7593 0.608130 GGGCTAAAGGCTTGTTTGGG 59.392 55.000 0.00 0.00 41.46 4.12 R
8236 9267 0.179094 CAATTGGCCGCATGCAGATT 60.179 50.000 19.57 6.81 43.89 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.368531 GCAGATCCCGGTATACCTTCATC 60.369 52.174 19.68 15.55 0.00 2.92
35 36 2.363038 CCCGGTATACCTTCATCGTTCA 59.637 50.000 19.68 0.00 0.00 3.18
94 144 9.877178 CTGGTATCACTTATATTCATAGAACCC 57.123 37.037 0.00 0.00 0.00 4.11
95 145 9.387397 TGGTATCACTTATATTCATAGAACCCA 57.613 33.333 0.00 0.00 0.00 4.51
99 149 8.958119 TCACTTATATTCATAGAACCCAACAC 57.042 34.615 0.00 0.00 0.00 3.32
100 150 7.990886 TCACTTATATTCATAGAACCCAACACC 59.009 37.037 0.00 0.00 0.00 4.16
101 151 7.773224 CACTTATATTCATAGAACCCAACACCA 59.227 37.037 0.00 0.00 0.00 4.17
102 152 8.502738 ACTTATATTCATAGAACCCAACACCAT 58.497 33.333 0.00 0.00 0.00 3.55
103 153 8.690203 TTATATTCATAGAACCCAACACCATG 57.310 34.615 0.00 0.00 0.00 3.66
104 154 4.380843 TTCATAGAACCCAACACCATGT 57.619 40.909 0.00 0.00 0.00 3.21
105 155 5.506730 TTCATAGAACCCAACACCATGTA 57.493 39.130 0.00 0.00 0.00 2.29
106 156 5.506730 TCATAGAACCCAACACCATGTAA 57.493 39.130 0.00 0.00 0.00 2.41
107 157 5.496556 TCATAGAACCCAACACCATGTAAG 58.503 41.667 0.00 0.00 0.00 2.34
108 158 2.514803 AGAACCCAACACCATGTAAGC 58.485 47.619 0.00 0.00 0.00 3.09
109 159 2.108250 AGAACCCAACACCATGTAAGCT 59.892 45.455 0.00 0.00 0.00 3.74
110 160 3.329520 AGAACCCAACACCATGTAAGCTA 59.670 43.478 0.00 0.00 0.00 3.32
111 161 3.350219 ACCCAACACCATGTAAGCTAG 57.650 47.619 0.00 0.00 0.00 3.42
130 180 2.741433 TGGTAGAACCAGCAGACGT 58.259 52.632 0.00 0.00 44.79 4.34
155 205 2.409948 AGTATGGCTTGCTTCAGGAC 57.590 50.000 0.00 0.00 0.00 3.85
156 206 1.065126 AGTATGGCTTGCTTCAGGACC 60.065 52.381 0.00 0.00 0.00 4.46
159 209 1.676967 GGCTTGCTTCAGGACCTGG 60.677 63.158 21.56 7.51 31.51 4.45
164 214 0.615331 TGCTTCAGGACCTGGTGATC 59.385 55.000 21.56 7.31 31.51 2.92
165 215 0.107459 GCTTCAGGACCTGGTGATCC 60.107 60.000 21.56 0.00 34.98 3.36
167 217 0.252057 TTCAGGACCTGGTGATCCGA 60.252 55.000 21.56 0.00 40.20 4.55
215 265 5.186409 AGAGTTGCTACCCGAGTAATACAAA 59.814 40.000 0.00 0.00 31.90 2.83
306 366 1.984570 CCACGAGAGGCTCCCAAGA 60.985 63.158 11.71 0.00 0.00 3.02
307 367 1.333636 CCACGAGAGGCTCCCAAGAT 61.334 60.000 11.71 0.00 0.00 2.40
333 394 1.005394 GTTTCCTGCCTTCCGTCGA 60.005 57.895 0.00 0.00 0.00 4.20
334 395 0.391263 GTTTCCTGCCTTCCGTCGAT 60.391 55.000 0.00 0.00 0.00 3.59
355 416 1.656818 CCATCGCCGATTTGCCTTGT 61.657 55.000 0.00 0.00 0.00 3.16
377 438 2.705658 CTCCTGTGGCCTTATGTCCATA 59.294 50.000 3.32 0.00 34.47 2.74
382 443 3.699038 TGTGGCCTTATGTCCATAAAAGC 59.301 43.478 3.32 10.86 33.34 3.51
386 447 2.032030 CCTTATGTCCATAAAAGCGCGG 60.032 50.000 8.83 0.00 33.34 6.46
399 460 4.570663 CGCGGTGGATCTCGACCC 62.571 72.222 0.00 0.00 41.06 4.46
403 464 1.320344 CGGTGGATCTCGACCCTTGA 61.320 60.000 5.88 0.00 41.06 3.02
405 466 0.179134 GTGGATCTCGACCCTTGACG 60.179 60.000 0.00 0.00 0.00 4.35
412 473 0.824595 TCGACCCTTGACGACAGGAA 60.825 55.000 0.00 0.00 33.89 3.36
415 476 1.376037 CCCTTGACGACAGGAAGGC 60.376 63.158 0.00 0.00 0.00 4.35
468 529 5.996669 TTCTTGAGTTTCGTTAGGGTTTC 57.003 39.130 0.00 0.00 0.00 2.78
474 535 5.482878 TGAGTTTCGTTAGGGTTTCTATCCT 59.517 40.000 0.00 0.00 37.18 3.24
476 537 3.814005 TCGTTAGGGTTTCTATCCTGC 57.186 47.619 0.00 0.00 34.75 4.85
507 622 4.971125 GCCGCGGTCCCTAGCATC 62.971 72.222 28.70 0.93 0.00 3.91
508 623 4.647615 CCGCGGTCCCTAGCATCG 62.648 72.222 19.50 0.00 0.00 3.84
512 627 2.184830 CGGTCCCTAGCATCGTCGA 61.185 63.158 0.00 0.00 0.00 4.20
521 636 0.313987 AGCATCGTCGAAGTGTGTGA 59.686 50.000 0.00 0.00 0.00 3.58
533 648 1.902508 AGTGTGTGACTCCGATGGATT 59.097 47.619 0.00 0.00 0.00 3.01
538 653 4.250464 GTGTGACTCCGATGGATTTTGTA 58.750 43.478 0.00 0.00 0.00 2.41
544 659 6.884295 TGACTCCGATGGATTTTGTAAGATTT 59.116 34.615 0.00 0.00 0.00 2.17
551 667 8.638565 CGATGGATTTTGTAAGATTTGTTTGTC 58.361 33.333 0.00 0.00 0.00 3.18
556 672 9.445786 GATTTTGTAAGATTTGTTTGTCTTCGA 57.554 29.630 0.00 0.00 36.23 3.71
570 686 3.009723 GTCTTCGATGGATTTGCTTGGA 58.990 45.455 0.00 0.00 0.00 3.53
581 698 3.363341 TTTGCTTGGATCGGTTTTGTC 57.637 42.857 0.00 0.00 0.00 3.18
589 706 2.029470 GGATCGGTTTTGTCCATTTGCA 60.029 45.455 0.00 0.00 32.23 4.08
609 726 0.249120 TCCGTGCATCTACTGGTTGG 59.751 55.000 0.00 0.00 0.00 3.77
634 751 6.656632 TCCTTCTGATCTACGCTTATCATT 57.343 37.500 0.00 0.00 31.95 2.57
636 753 7.821652 TCCTTCTGATCTACGCTTATCATTAG 58.178 38.462 0.00 0.00 31.95 1.73
657 774 3.223186 CAACGATTGCTGTTTTTGTGC 57.777 42.857 0.00 0.00 0.00 4.57
669 786 3.246619 GTTTTTGTGCGTTGGTTCTTCA 58.753 40.909 0.00 0.00 0.00 3.02
672 789 1.282875 GTGCGTTGGTTCTTCAGGC 59.717 57.895 0.00 0.00 0.00 4.85
689 806 1.275573 AGGCCTTACCACGAAGACTTC 59.724 52.381 0.00 5.03 43.14 3.01
691 808 1.675116 GCCTTACCACGAAGACTTCCC 60.675 57.143 9.63 0.00 0.00 3.97
701 818 2.096174 CGAAGACTTCCCGACTGTCTAG 59.904 54.545 9.63 0.00 39.78 2.43
713 832 4.261909 CCGACTGTCTAGTACAACAAGGTT 60.262 45.833 6.21 0.00 37.74 3.50
714 833 5.287226 CGACTGTCTAGTACAACAAGGTTT 58.713 41.667 6.21 0.00 37.74 3.27
719 838 1.314730 AGTACAACAAGGTTTGCCCG 58.685 50.000 0.00 0.00 38.74 6.13
744 863 2.338785 GGCTCCCTTCAGTGCTTGC 61.339 63.158 0.00 0.00 0.00 4.01
751 870 0.940126 CTTCAGTGCTTGCAGTCGTT 59.060 50.000 0.00 0.00 0.00 3.85
775 894 4.099113 GGTAGGTGGTCTATGAAGGTGTAC 59.901 50.000 0.00 0.00 0.00 2.90
798 917 7.755582 ACTTTCTATTGTTTGTGTTCTTTGC 57.244 32.000 0.00 0.00 0.00 3.68
813 940 5.749588 TGTTCTTTGCACTGTTTGATGAATG 59.250 36.000 0.00 0.00 0.00 2.67
818 945 4.080687 TGCACTGTTTGATGAATGGATCA 58.919 39.130 0.00 0.00 43.67 2.92
822 949 6.405508 GCACTGTTTGATGAATGGATCAGAAT 60.406 38.462 0.00 0.00 42.53 2.40
994 1958 1.937528 TAGGAGAACCCCGGGGAGA 60.938 63.158 46.68 18.58 38.96 3.71
1020 1984 2.977178 CTGCACGAGCTCCTCCTT 59.023 61.111 8.47 0.00 42.74 3.36
1198 2162 1.304547 AGACCCGAGACCTGTCCTG 60.305 63.158 0.00 0.00 0.00 3.86
1217 2181 0.370273 GTGCTGCGAATCTGTAACCG 59.630 55.000 0.00 0.00 0.00 4.44
1295 2259 2.803956 GCACAAGCAAGCAAACATGAAT 59.196 40.909 0.00 0.00 41.58 2.57
1393 2357 4.436986 GCCTAAATCAGAGTTAACCGCAAC 60.437 45.833 0.88 0.00 0.00 4.17
1417 2381 1.999295 TGGATGGAGGATTGGACCAAA 59.001 47.619 11.82 0.00 37.24 3.28
1469 2433 3.066190 CCTACCAGTCGGTCCGCA 61.066 66.667 6.34 0.00 44.71 5.69
1545 2509 4.222124 ACATTGGGATGGAGTAAGACAC 57.778 45.455 0.00 0.00 37.60 3.67
1555 2519 1.734465 GAGTAAGACACTGGCACATGC 59.266 52.381 0.00 0.00 37.72 4.06
1570 2534 4.337763 GCACATGCTGAATTTACGAGAAG 58.662 43.478 0.00 0.00 38.21 2.85
1601 2565 7.562454 TTCAACTAAGGGACAAACTAACAAG 57.438 36.000 0.00 0.00 0.00 3.16
1652 2616 4.258457 AGCCTCAGTAGTCCAAGTCTAT 57.742 45.455 0.00 0.00 0.00 1.98
1873 2838 8.406172 ACACAAAAACTACTGCTTAACAAATG 57.594 30.769 0.00 0.00 0.00 2.32
1959 2924 7.279090 CCGACCACTTTACATGATAAATACACA 59.721 37.037 0.00 0.00 0.00 3.72
2053 3018 4.346970 TGTAAGTGTTCATTTTGTGCGTG 58.653 39.130 0.00 0.00 0.00 5.34
2099 3065 9.228949 GGATACAAGAAGTCGTATCTAATAGGA 57.771 37.037 8.87 0.00 42.34 2.94
2145 3111 4.216411 TGTATAGAAGTTTCCAGTGCCC 57.784 45.455 0.00 0.00 0.00 5.36
2146 3112 3.585289 TGTATAGAAGTTTCCAGTGCCCA 59.415 43.478 0.00 0.00 0.00 5.36
2164 3130 5.049129 GTGCCCAGAAGTATTAGCAATCATC 60.049 44.000 0.00 0.00 31.03 2.92
2199 3165 6.595772 AGTTCTTAGAATCGTCATCAATGC 57.404 37.500 0.00 0.00 0.00 3.56
2239 3205 7.966812 TGGCAAGCAAGATATAGATAGAAGAA 58.033 34.615 0.00 0.00 0.00 2.52
2291 3265 6.071051 TCACCAAATACTAAATGGCTTTTCCC 60.071 38.462 1.19 0.00 37.77 3.97
2551 3525 2.682856 TGAGCAAAACCTGTTGTCAGAC 59.317 45.455 0.00 0.00 43.76 3.51
2669 3643 1.175983 TTTCCGCACAACCATGGACC 61.176 55.000 21.47 0.25 0.00 4.46
2688 3662 7.385778 TGGACCTAACTATTGCATTTACAAC 57.614 36.000 0.00 0.00 31.03 3.32
2704 3678 9.458374 GCATTTACAACATTTGTTAAGTACTGT 57.542 29.630 0.00 0.00 42.22 3.55
2762 3736 2.605837 TTATATTCCTTCGGCGTGCA 57.394 45.000 6.85 0.00 0.00 4.57
2778 3752 4.452114 GGCGTGCATTATCTGATGTGATTA 59.548 41.667 0.00 0.00 0.00 1.75
2795 3769 5.298276 TGTGATTAGTCTGGTTTTTGACACC 59.702 40.000 0.00 0.00 35.81 4.16
3060 4034 5.565509 TGCATGGGAAACATTGTACTTCTA 58.434 37.500 0.00 0.00 37.84 2.10
3110 4084 9.246670 CATATTTCTTATGCCCCTTATGATCAA 57.753 33.333 0.00 0.00 31.74 2.57
3414 4388 7.611467 TGTGAAATTTCAACTATAGGAGCACAT 59.389 33.333 22.07 0.00 39.21 3.21
3510 4484 6.569179 TTATAATTTCGCCCCTTAATCAGC 57.431 37.500 0.00 0.00 0.00 4.26
3511 4485 2.435372 ATTTCGCCCCTTAATCAGCA 57.565 45.000 0.00 0.00 0.00 4.41
3512 4486 2.208132 TTTCGCCCCTTAATCAGCAA 57.792 45.000 0.00 0.00 0.00 3.91
3513 4487 2.208132 TTCGCCCCTTAATCAGCAAA 57.792 45.000 0.00 0.00 0.00 3.68
3514 4488 1.459450 TCGCCCCTTAATCAGCAAAC 58.541 50.000 0.00 0.00 0.00 2.93
3515 4489 1.173043 CGCCCCTTAATCAGCAAACA 58.827 50.000 0.00 0.00 0.00 2.83
3516 4490 1.133025 CGCCCCTTAATCAGCAAACAG 59.867 52.381 0.00 0.00 0.00 3.16
3525 4523 4.825546 AATCAGCAAACAGTTCTGTGAG 57.174 40.909 6.22 3.83 0.00 3.51
3587 4585 4.272018 ACTGATATGCACGAGAATTTGCTC 59.728 41.667 0.00 0.00 39.62 4.26
3837 4839 5.705609 GGCACCAAGAAAGTATCAAAAGA 57.294 39.130 0.00 0.00 0.00 2.52
3845 4847 8.421002 CCAAGAAAGTATCAAAAGAGGGAAAAA 58.579 33.333 0.00 0.00 0.00 1.94
3873 4875 2.686835 GAGCCCCTGAGCCAGAGT 60.687 66.667 4.00 0.00 32.44 3.24
3915 4917 4.753516 TCTTTTCAGACAGGTTGACAGA 57.246 40.909 0.00 0.00 0.00 3.41
3918 4920 3.735237 TTCAGACAGGTTGACAGAGAC 57.265 47.619 0.00 0.00 0.00 3.36
4085 5095 5.075067 AGGCAATAAATGTTCCCCTAGCTAT 59.925 40.000 0.00 0.00 0.00 2.97
4194 5204 6.586463 GCAAAGCAATAAGGGTTCTTAGAAAC 59.414 38.462 0.59 0.59 38.69 2.78
4227 5237 1.202348 GCTACATTGCTGGAACCAACC 59.798 52.381 0.00 0.00 0.00 3.77
4269 5279 6.039047 TGAAAGGATCTCATAGAATGCAAAGC 59.961 38.462 0.00 0.00 0.00 3.51
4296 5306 2.125350 GGCTCCGGTGCTCTGAAG 60.125 66.667 26.25 3.20 0.00 3.02
4477 5488 5.164100 CCTGTTTTGTGTGTCAAAGTTTTCG 60.164 40.000 0.00 0.00 45.14 3.46
4497 5508 9.946165 GTTTTCGTTTATCCTTATCCTTTATGG 57.054 33.333 0.00 0.00 37.10 2.74
4498 5509 8.685838 TTTCGTTTATCCTTATCCTTTATGGG 57.314 34.615 0.00 0.00 36.20 4.00
4499 5510 7.621006 TCGTTTATCCTTATCCTTTATGGGA 57.379 36.000 0.00 0.00 39.95 4.37
4517 5528 5.848286 TGGGAGGAGCATTATTGACATAT 57.152 39.130 0.00 0.00 0.00 1.78
4605 5616 6.102006 TCAATACGTACAATTGCAGCTAAC 57.898 37.500 5.05 0.00 34.89 2.34
4670 5681 9.176460 TCTATCAATGTTTTATTGCACATGAGA 57.824 29.630 0.00 0.00 33.76 3.27
4671 5682 9.961265 CTATCAATGTTTTATTGCACATGAGAT 57.039 29.630 0.00 0.00 33.76 2.75
4868 5879 5.824904 CAAATTGTGCTATAGTGCCTTCT 57.175 39.130 0.84 0.00 0.00 2.85
4943 5954 1.094785 AAGCCGTCAATTAATGCGCT 58.905 45.000 9.73 0.00 0.00 5.92
5007 6018 4.766891 CCCATTTCAGTTGGTAAGTGACAT 59.233 41.667 0.00 0.00 40.39 3.06
5019 6030 5.536916 TGGTAAGTGACATAACCCCTTTTTG 59.463 40.000 0.00 0.00 0.00 2.44
5263 6275 6.985188 TTCTGTTTGGCACATAGAGTAATC 57.015 37.500 0.41 0.00 39.30 1.75
5268 6280 3.653344 TGGCACATAGAGTAATCGATGC 58.347 45.455 12.37 7.60 0.00 3.91
5291 6306 5.700373 GCCAAGCCATTTTTGAATTTCAGTA 59.300 36.000 0.00 0.00 0.00 2.74
5293 6308 6.930722 CCAAGCCATTTTTGAATTTCAGTACT 59.069 34.615 0.00 0.00 0.00 2.73
5324 6339 8.600449 TTGACAACTGATTTTGTTTGTCTTTT 57.400 26.923 12.96 0.00 39.88 2.27
5522 6537 5.118817 CCTGACGTTCTTTCTAAGTAAGTGC 59.881 44.000 0.00 0.00 0.00 4.40
5531 6546 7.082602 TCTTTCTAAGTAAGTGCTGTACTTCG 58.917 38.462 14.44 0.00 46.55 3.79
5552 6567 8.495949 ACTTCGTATGTTACTCTCAACAAAATG 58.504 33.333 0.00 0.00 41.50 2.32
5588 6603 9.519191 TGAATTCCATAGATCTTTGAGTTTTGA 57.481 29.630 14.06 0.02 0.00 2.69
5681 6696 7.961325 TTTGAGCTTTTTACATTCCCATTTC 57.039 32.000 0.00 0.00 0.00 2.17
5982 6997 7.147444 ACCTTTGGTAATAATTCGGAGGATGTA 60.147 37.037 0.00 0.00 32.11 2.29
5988 7003 8.041323 GGTAATAATTCGGAGGATGTACATGAT 58.959 37.037 14.43 0.49 0.00 2.45
6021 7036 3.660501 ACGAGAAGCTACAACATGACA 57.339 42.857 0.00 0.00 0.00 3.58
6054 7069 4.021632 CAGATAGCTGCTAGGAATGTGCTA 60.022 45.833 15.41 5.58 37.41 3.49
6063 7078 5.767665 TGCTAGGAATGTGCTAGTTTCAAAA 59.232 36.000 5.80 0.00 40.10 2.44
6167 7184 6.061441 TGTAATTGAGTCACAGTGGAATGTT 58.939 36.000 0.00 0.00 0.00 2.71
6236 7253 5.625150 ACCTTTCATCAAGAGTAAGCAACT 58.375 37.500 0.00 0.00 42.80 3.16
6265 7282 9.515020 TTTTCACTTTATGCTGTCTAACTTTTG 57.485 29.630 0.00 0.00 0.00 2.44
6337 7354 5.804639 ACTGTTTACTGAATCCATGCTACA 58.195 37.500 0.00 0.00 0.00 2.74
6341 7358 6.072728 TGTTTACTGAATCCATGCTACAACAC 60.073 38.462 0.00 0.00 0.00 3.32
6420 7437 8.274322 AGGAAACATTATGGATCTGTGTTCATA 58.726 33.333 0.00 0.00 32.32 2.15
6421 7438 8.345565 GGAAACATTATGGATCTGTGTTCATAC 58.654 37.037 0.00 0.00 32.32 2.39
6422 7439 9.113838 GAAACATTATGGATCTGTGTTCATACT 57.886 33.333 0.00 0.00 32.32 2.12
6423 7440 9.466497 AAACATTATGGATCTGTGTTCATACTT 57.534 29.630 0.00 0.00 32.32 2.24
6424 7441 8.668510 ACATTATGGATCTGTGTTCATACTTC 57.331 34.615 0.00 0.00 0.00 3.01
6425 7442 8.267183 ACATTATGGATCTGTGTTCATACTTCA 58.733 33.333 0.00 0.00 0.00 3.02
6426 7443 9.281371 CATTATGGATCTGTGTTCATACTTCAT 57.719 33.333 0.00 0.00 0.00 2.57
6452 7472 4.110036 ACTTGTTCTTTTGCTTCACCAC 57.890 40.909 0.00 0.00 0.00 4.16
6453 7473 3.119137 ACTTGTTCTTTTGCTTCACCACC 60.119 43.478 0.00 0.00 0.00 4.61
6454 7474 2.451490 TGTTCTTTTGCTTCACCACCA 58.549 42.857 0.00 0.00 0.00 4.17
6455 7475 2.828520 TGTTCTTTTGCTTCACCACCAA 59.171 40.909 0.00 0.00 0.00 3.67
6533 7553 4.314121 TGGATGTTTTGGTTTTGCATAGC 58.686 39.130 0.00 0.00 0.00 2.97
6534 7554 3.684305 GGATGTTTTGGTTTTGCATAGCC 59.316 43.478 3.03 3.03 0.00 3.93
6535 7555 3.118905 TGTTTTGGTTTTGCATAGCCC 57.881 42.857 7.53 0.00 0.00 5.19
6536 7556 2.703007 TGTTTTGGTTTTGCATAGCCCT 59.297 40.909 7.53 0.00 0.00 5.19
6537 7557 3.135530 TGTTTTGGTTTTGCATAGCCCTT 59.864 39.130 7.53 0.00 0.00 3.95
6538 7558 4.133820 GTTTTGGTTTTGCATAGCCCTTT 58.866 39.130 7.53 0.00 0.00 3.11
6539 7559 3.676291 TTGGTTTTGCATAGCCCTTTC 57.324 42.857 7.53 0.00 0.00 2.62
6540 7560 2.888212 TGGTTTTGCATAGCCCTTTCT 58.112 42.857 7.53 0.00 0.00 2.52
6541 7561 4.040936 TGGTTTTGCATAGCCCTTTCTA 57.959 40.909 7.53 0.00 0.00 2.10
6542 7562 3.761752 TGGTTTTGCATAGCCCTTTCTAC 59.238 43.478 7.53 0.00 0.00 2.59
6543 7563 3.761752 GGTTTTGCATAGCCCTTTCTACA 59.238 43.478 0.00 0.00 0.00 2.74
6544 7564 4.219725 GGTTTTGCATAGCCCTTTCTACAA 59.780 41.667 0.00 0.00 0.00 2.41
6545 7565 5.161358 GTTTTGCATAGCCCTTTCTACAAC 58.839 41.667 0.00 0.00 0.00 3.32
6546 7566 3.712016 TGCATAGCCCTTTCTACAACA 57.288 42.857 0.00 0.00 0.00 3.33
6547 7567 4.027674 TGCATAGCCCTTTCTACAACAA 57.972 40.909 0.00 0.00 0.00 2.83
6548 7568 3.756434 TGCATAGCCCTTTCTACAACAAC 59.244 43.478 0.00 0.00 0.00 3.32
6549 7569 3.756434 GCATAGCCCTTTCTACAACAACA 59.244 43.478 0.00 0.00 0.00 3.33
6550 7570 4.217550 GCATAGCCCTTTCTACAACAACAA 59.782 41.667 0.00 0.00 0.00 2.83
6551 7571 5.699839 CATAGCCCTTTCTACAACAACAAC 58.300 41.667 0.00 0.00 0.00 3.32
6552 7572 3.626930 AGCCCTTTCTACAACAACAACA 58.373 40.909 0.00 0.00 0.00 3.33
6553 7573 4.020543 AGCCCTTTCTACAACAACAACAA 58.979 39.130 0.00 0.00 0.00 2.83
6554 7574 4.109766 GCCCTTTCTACAACAACAACAAC 58.890 43.478 0.00 0.00 0.00 3.32
6555 7575 4.381079 GCCCTTTCTACAACAACAACAACA 60.381 41.667 0.00 0.00 0.00 3.33
6556 7576 5.715070 CCCTTTCTACAACAACAACAACAA 58.285 37.500 0.00 0.00 0.00 2.83
6557 7577 5.575218 CCCTTTCTACAACAACAACAACAAC 59.425 40.000 0.00 0.00 0.00 3.32
6558 7578 6.153067 CCTTTCTACAACAACAACAACAACA 58.847 36.000 0.00 0.00 0.00 3.33
6559 7579 6.642950 CCTTTCTACAACAACAACAACAACAA 59.357 34.615 0.00 0.00 0.00 2.83
6560 7580 6.994868 TTCTACAACAACAACAACAACAAC 57.005 33.333 0.00 0.00 0.00 3.32
6561 7581 6.073327 TCTACAACAACAACAACAACAACA 57.927 33.333 0.00 0.00 0.00 3.33
6562 7582 6.504398 TCTACAACAACAACAACAACAACAA 58.496 32.000 0.00 0.00 0.00 2.83
6563 7583 6.978659 TCTACAACAACAACAACAACAACAAA 59.021 30.769 0.00 0.00 0.00 2.83
6564 7584 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
6565 7585 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
6566 7586 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
6567 7587 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
6568 7588 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
6569 7589 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
6570 7590 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
6571 7591 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
6572 7592 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
6573 7593 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
6574 7594 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
6575 7595 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
6576 7596 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
6577 7597 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
6578 7598 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
6579 7599 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
6580 7600 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
6581 7601 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
6582 7602 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
6583 7603 2.239400 AGCCTTTAGTCCCAAACAAGC 58.761 47.619 0.00 0.00 0.00 4.01
6584 7604 1.272490 GCCTTTAGTCCCAAACAAGCC 59.728 52.381 0.00 0.00 0.00 4.35
6585 7605 2.876581 CCTTTAGTCCCAAACAAGCCT 58.123 47.619 0.00 0.00 0.00 4.58
6586 7606 3.230976 CCTTTAGTCCCAAACAAGCCTT 58.769 45.455 0.00 0.00 0.00 4.35
6587 7607 3.641436 CCTTTAGTCCCAAACAAGCCTTT 59.359 43.478 0.00 0.00 0.00 3.11
6588 7608 4.830600 CCTTTAGTCCCAAACAAGCCTTTA 59.169 41.667 0.00 0.00 0.00 1.85
6589 7609 5.048013 CCTTTAGTCCCAAACAAGCCTTTAG 60.048 44.000 0.00 0.00 0.00 1.85
6630 7650 6.811665 GCAATAATTTCCCCTGTACTTTTGTC 59.188 38.462 0.00 0.00 0.00 3.18
6727 7747 3.004944 TGTTACCTTTGAATTTCCACGGC 59.995 43.478 0.00 0.00 0.00 5.68
6958 7978 2.574824 AGGTATTGTCCCACCTAACACC 59.425 50.000 0.00 0.00 43.48 4.16
6961 7981 2.577606 TTGTCCCACCTAACACCATG 57.422 50.000 0.00 0.00 0.00 3.66
6986 8006 4.651778 CCTTCTGTGAACAAATAGGGACA 58.348 43.478 0.00 0.00 0.00 4.02
6993 8013 3.245229 TGAACAAATAGGGACATGCCAGT 60.245 43.478 8.20 0.00 38.95 4.00
7230 8255 5.940470 TCTTTGAGGTAAGCTCTTCCAATTC 59.060 40.000 0.00 0.00 0.00 2.17
7270 8300 4.336433 CCATAGACATTGCCCTTGTACTTG 59.664 45.833 0.00 0.00 0.00 3.16
7398 8428 0.447801 GTTCTCGCCGTGATTTGCAT 59.552 50.000 0.00 0.00 0.00 3.96
7548 8578 2.857748 GTTTGTTTGGCTAGTGTTGTGC 59.142 45.455 0.00 0.00 0.00 4.57
7580 8610 1.234615 TGCGTTGCTTGCCTACCTTC 61.235 55.000 0.00 0.00 0.00 3.46
7643 8673 4.513318 GCCTTAGATGAAATGGTAGCAGAC 59.487 45.833 0.00 0.00 0.00 3.51
7662 8692 2.688958 GACTAGCAGACCCGTTCAGTAT 59.311 50.000 0.00 0.00 0.00 2.12
7718 8748 3.765381 TCTGGAAGGATGAATGCAACAA 58.235 40.909 0.00 0.00 0.00 2.83
7726 8756 6.288941 AGGATGAATGCAACAATGAAATGA 57.711 33.333 0.00 0.00 0.00 2.57
8048 9079 0.106419 GATCCTCGACCACTCCTCCT 60.106 60.000 0.00 0.00 0.00 3.69
8160 9191 1.620739 ATCATGAGGTGCGGCTCACT 61.621 55.000 7.64 0.00 44.98 3.41
8236 9267 0.972471 TCTCCGGCATCAAGCTCAGA 60.972 55.000 0.00 0.00 44.79 3.27
8284 9315 1.466167 GTTCATGTCATGCACGAAGCT 59.534 47.619 8.03 0.00 45.94 3.74
8295 9326 2.930040 TGCACGAAGCTAACTAATCAGC 59.070 45.455 6.22 0.00 45.94 4.26
8310 9341 6.387465 ACTAATCAGCGCGTGTAATGTATAT 58.613 36.000 8.43 0.00 0.00 0.86
8313 9344 6.627690 ATCAGCGCGTGTAATGTATATTAC 57.372 37.500 8.43 13.76 45.71 1.89
8314 9345 4.919168 TCAGCGCGTGTAATGTATATTACC 59.081 41.667 16.88 9.28 45.19 2.85
8315 9346 4.682401 CAGCGCGTGTAATGTATATTACCA 59.318 41.667 16.88 5.51 45.19 3.25
8316 9347 4.921515 AGCGCGTGTAATGTATATTACCAG 59.078 41.667 16.88 12.44 45.19 4.00
8317 9348 4.682860 GCGCGTGTAATGTATATTACCAGT 59.317 41.667 16.88 0.00 45.19 4.00
8318 9349 5.858049 GCGCGTGTAATGTATATTACCAGTA 59.142 40.000 16.88 0.00 45.19 2.74
8319 9350 6.033196 GCGCGTGTAATGTATATTACCAGTAG 59.967 42.308 16.88 11.02 45.19 2.57
8320 9351 6.033196 CGCGTGTAATGTATATTACCAGTAGC 59.967 42.308 16.88 13.51 45.19 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.720949 TGAACGATGAAGGTATACCGG 57.279 47.619 16.31 0.00 42.08 5.28
35 36 6.892485 TGTTCCATGAGTTGTATGATCTCAT 58.108 36.000 0.00 0.00 45.84 2.90
75 125 7.773224 TGGTGTTGGGTTCTATGAATATAAGTG 59.227 37.037 0.00 0.00 0.00 3.16
77 127 8.786898 CATGGTGTTGGGTTCTATGAATATAAG 58.213 37.037 0.00 0.00 0.00 1.73
78 128 8.278639 ACATGGTGTTGGGTTCTATGAATATAA 58.721 33.333 0.00 0.00 0.00 0.98
79 129 7.811282 ACATGGTGTTGGGTTCTATGAATATA 58.189 34.615 0.00 0.00 0.00 0.86
80 130 6.672593 ACATGGTGTTGGGTTCTATGAATAT 58.327 36.000 0.00 0.00 0.00 1.28
81 131 6.073447 ACATGGTGTTGGGTTCTATGAATA 57.927 37.500 0.00 0.00 0.00 1.75
82 132 4.934356 ACATGGTGTTGGGTTCTATGAAT 58.066 39.130 0.00 0.00 0.00 2.57
83 133 4.380843 ACATGGTGTTGGGTTCTATGAA 57.619 40.909 0.00 0.00 0.00 2.57
84 134 5.496556 CTTACATGGTGTTGGGTTCTATGA 58.503 41.667 0.00 0.00 0.00 2.15
85 135 4.096382 GCTTACATGGTGTTGGGTTCTATG 59.904 45.833 0.00 0.00 0.00 2.23
86 136 4.018415 AGCTTACATGGTGTTGGGTTCTAT 60.018 41.667 0.00 0.00 0.00 1.98
87 137 3.329520 AGCTTACATGGTGTTGGGTTCTA 59.670 43.478 0.00 0.00 0.00 2.10
88 138 2.108250 AGCTTACATGGTGTTGGGTTCT 59.892 45.455 0.00 0.00 0.00 3.01
89 139 2.514803 AGCTTACATGGTGTTGGGTTC 58.485 47.619 0.00 0.00 0.00 3.62
90 140 2.675658 AGCTTACATGGTGTTGGGTT 57.324 45.000 0.00 0.00 0.00 4.11
91 141 2.642807 ACTAGCTTACATGGTGTTGGGT 59.357 45.455 0.00 0.00 0.00 4.51
92 142 3.009723 CACTAGCTTACATGGTGTTGGG 58.990 50.000 0.00 0.00 0.00 4.12
93 143 3.009723 CCACTAGCTTACATGGTGTTGG 58.990 50.000 0.00 0.00 0.00 3.77
94 144 3.674997 ACCACTAGCTTACATGGTGTTG 58.325 45.455 9.37 0.00 43.88 3.33
95 145 4.775780 TCTACCACTAGCTTACATGGTGTT 59.224 41.667 16.80 0.00 45.14 3.32
96 146 4.350245 TCTACCACTAGCTTACATGGTGT 58.650 43.478 16.80 0.00 45.14 4.16
97 147 5.109903 GTTCTACCACTAGCTTACATGGTG 58.890 45.833 16.80 9.63 45.14 4.17
98 148 6.282616 TGGTTCTACCACTAGCTTACATGGT 61.283 44.000 13.42 13.42 44.79 3.55
99 149 4.161565 TGGTTCTACCACTAGCTTACATGG 59.838 45.833 0.00 0.00 44.79 3.66
100 150 5.339008 TGGTTCTACCACTAGCTTACATG 57.661 43.478 0.00 0.00 44.79 3.21
101 151 4.141914 GCTGGTTCTACCACTAGCTTACAT 60.142 45.833 0.00 0.00 44.79 2.29
102 152 3.194968 GCTGGTTCTACCACTAGCTTACA 59.805 47.826 0.00 0.00 44.79 2.41
103 153 3.783191 GCTGGTTCTACCACTAGCTTAC 58.217 50.000 0.00 0.00 44.79 2.34
107 157 1.825474 TCTGCTGGTTCTACCACTAGC 59.175 52.381 2.48 2.48 44.79 3.42
108 158 2.159366 CGTCTGCTGGTTCTACCACTAG 60.159 54.545 0.00 0.00 44.79 2.57
109 159 1.816835 CGTCTGCTGGTTCTACCACTA 59.183 52.381 0.00 0.00 44.79 2.74
110 160 0.603569 CGTCTGCTGGTTCTACCACT 59.396 55.000 0.00 0.00 44.79 4.00
111 161 0.317479 ACGTCTGCTGGTTCTACCAC 59.683 55.000 0.00 0.00 44.79 4.16
125 175 5.071370 AGCAAGCCATACTATAGTACGTCT 58.929 41.667 14.82 8.83 32.72 4.18
127 177 5.301045 TGAAGCAAGCCATACTATAGTACGT 59.699 40.000 14.82 0.00 32.72 3.57
129 179 6.015350 TCCTGAAGCAAGCCATACTATAGTAC 60.015 42.308 14.82 3.05 32.72 2.73
130 180 6.015350 GTCCTGAAGCAAGCCATACTATAGTA 60.015 42.308 14.87 14.87 34.67 1.82
155 205 3.543680 AAGTTGTATCGGATCACCAGG 57.456 47.619 0.00 0.00 35.59 4.45
156 206 8.141909 TCTTATAAAGTTGTATCGGATCACCAG 58.858 37.037 0.00 0.00 35.59 4.00
189 239 6.066690 TGTATTACTCGGGTAGCAACTCTAT 58.933 40.000 0.00 0.00 0.00 1.98
193 243 5.410355 TTTGTATTACTCGGGTAGCAACT 57.590 39.130 0.00 0.00 0.00 3.16
223 273 6.823689 GGTTCCTTGATAGAGAACATTAGCAA 59.176 38.462 4.69 0.00 41.32 3.91
224 274 6.070251 TGGTTCCTTGATAGAGAACATTAGCA 60.070 38.462 4.69 0.00 41.32 3.49
225 275 6.258947 GTGGTTCCTTGATAGAGAACATTAGC 59.741 42.308 4.69 0.00 41.32 3.09
263 313 8.319146 GGAGGAGGGAAATGTTTCGATAATATA 58.681 37.037 0.00 0.00 38.06 0.86
266 316 5.104109 TGGAGGAGGGAAATGTTTCGATAAT 60.104 40.000 0.00 0.00 38.06 1.28
269 329 2.576191 TGGAGGAGGGAAATGTTTCGAT 59.424 45.455 0.00 0.00 38.06 3.59
306 366 1.972588 AGGCAGGAAACCCTAGTCAT 58.027 50.000 0.00 0.00 31.47 3.06
307 367 1.628846 GAAGGCAGGAAACCCTAGTCA 59.371 52.381 0.00 0.00 31.47 3.41
333 394 2.723746 GCAAATCGGCGATGGCAT 59.276 55.556 30.05 12.87 42.47 4.40
334 395 3.517140 GGCAAATCGGCGATGGCA 61.517 61.111 33.21 8.25 42.47 4.92
355 416 1.204146 GGACATAAGGCCACAGGAGA 58.796 55.000 5.01 0.00 0.00 3.71
377 438 2.100631 CGAGATCCACCGCGCTTTT 61.101 57.895 5.56 0.00 0.00 2.27
382 443 4.570663 GGGTCGAGATCCACCGCG 62.571 72.222 0.00 0.00 32.89 6.46
386 447 0.179134 CGTCAAGGGTCGAGATCCAC 60.179 60.000 5.08 0.00 32.73 4.02
399 460 0.390472 GGAGCCTTCCTGTCGTCAAG 60.390 60.000 0.00 0.00 40.58 3.02
432 493 7.753580 CGAAACTCAAGAAAACACCTAAAAAGT 59.246 33.333 0.00 0.00 0.00 2.66
433 494 7.753580 ACGAAACTCAAGAAAACACCTAAAAAG 59.246 33.333 0.00 0.00 0.00 2.27
434 495 7.595604 ACGAAACTCAAGAAAACACCTAAAAA 58.404 30.769 0.00 0.00 0.00 1.94
448 509 6.313164 GGATAGAAACCCTAACGAAACTCAAG 59.687 42.308 0.00 0.00 0.00 3.02
450 511 5.482878 AGGATAGAAACCCTAACGAAACTCA 59.517 40.000 0.00 0.00 0.00 3.41
474 535 4.087892 GCCTCGCCTTCCTGAGCA 62.088 66.667 0.00 0.00 0.00 4.26
492 553 3.825833 GACGATGCTAGGGACCGCG 62.826 68.421 0.00 0.00 0.00 6.46
498 559 0.456221 ACACTTCGACGATGCTAGGG 59.544 55.000 10.39 2.94 0.00 3.53
499 560 1.135373 ACACACTTCGACGATGCTAGG 60.135 52.381 10.39 1.73 0.00 3.02
502 563 0.313987 TCACACACTTCGACGATGCT 59.686 50.000 10.39 0.00 0.00 3.79
503 564 0.435008 GTCACACACTTCGACGATGC 59.565 55.000 10.39 0.00 0.00 3.91
507 622 2.797515 GGAGTCACACACTTCGACG 58.202 57.895 0.00 0.00 34.41 5.12
512 627 1.338107 TCCATCGGAGTCACACACTT 58.662 50.000 0.00 0.00 34.41 3.16
521 636 6.659242 ACAAATCTTACAAAATCCATCGGAGT 59.341 34.615 0.00 0.00 34.05 3.85
533 648 7.860373 CCATCGAAGACAAACAAATCTTACAAA 59.140 33.333 0.00 0.00 42.51 2.83
538 653 6.824305 ATCCATCGAAGACAAACAAATCTT 57.176 33.333 0.00 0.00 42.51 2.40
544 659 3.820467 AGCAAATCCATCGAAGACAAACA 59.180 39.130 0.00 0.00 42.51 2.83
551 667 3.303593 CGATCCAAGCAAATCCATCGAAG 60.304 47.826 0.00 0.00 36.14 3.79
556 672 2.442236 ACCGATCCAAGCAAATCCAT 57.558 45.000 0.00 0.00 0.00 3.41
570 686 3.368323 GGATGCAAATGGACAAAACCGAT 60.368 43.478 0.00 0.00 0.00 4.18
589 706 1.134401 CCAACCAGTAGATGCACGGAT 60.134 52.381 0.00 0.00 0.00 4.18
657 774 1.804748 GTAAGGCCTGAAGAACCAACG 59.195 52.381 5.69 0.00 0.00 4.10
669 786 1.275573 GAAGTCTTCGTGGTAAGGCCT 59.724 52.381 0.00 0.00 38.35 5.19
672 789 1.403780 CGGGAAGTCTTCGTGGTAAGG 60.404 57.143 6.50 0.00 0.00 2.69
689 806 3.367087 CCTTGTTGTACTAGACAGTCGGG 60.367 52.174 0.00 0.00 39.88 5.14
691 808 4.500603 ACCTTGTTGTACTAGACAGTCG 57.499 45.455 0.00 0.00 39.88 4.18
701 818 0.312729 CCGGGCAAACCTTGTTGTAC 59.687 55.000 0.00 0.00 36.97 2.90
719 838 1.746991 CTGAAGGGAGCCGAAAGCC 60.747 63.158 0.00 0.00 45.47 4.35
734 853 1.159713 CCAACGACTGCAAGCACTGA 61.160 55.000 0.00 0.00 37.60 3.41
744 863 0.966920 AGACCACCTACCAACGACTG 59.033 55.000 0.00 0.00 0.00 3.51
751 870 3.104512 CACCTTCATAGACCACCTACCA 58.895 50.000 0.00 0.00 0.00 3.25
775 894 7.489113 AGTGCAAAGAACACAAACAATAGAAAG 59.511 33.333 0.00 0.00 40.59 2.62
798 917 6.505044 TTCTGATCCATTCATCAAACAGTG 57.495 37.500 0.00 0.00 32.24 3.66
883 1839 0.596082 ACGGCGGAATTCAGGTTTTG 59.404 50.000 13.24 0.00 0.00 2.44
884 1840 0.879090 GACGGCGGAATTCAGGTTTT 59.121 50.000 13.24 0.00 0.00 2.43
994 1958 4.457496 CTCGTGCAGCATCCCGGT 62.457 66.667 0.00 0.00 0.00 5.28
1193 2157 0.671781 ACAGATTCGCAGCACAGGAC 60.672 55.000 0.00 0.00 0.00 3.85
1198 2162 0.370273 CGGTTACAGATTCGCAGCAC 59.630 55.000 0.00 0.00 0.00 4.40
1232 2196 3.428999 CCACCTAACTACACCACAGATCG 60.429 52.174 0.00 0.00 0.00 3.69
1295 2259 0.696501 GGAAACAAGTCCCCTGGCTA 59.303 55.000 0.00 0.00 0.00 3.93
1347 2311 1.063469 CCATAAAGCACTTAACGCGGG 59.937 52.381 12.47 0.00 0.00 6.13
1393 2357 1.149174 CCAATCCTCCATCCACCGG 59.851 63.158 0.00 0.00 0.00 5.28
1399 2363 3.181472 GCAATTTGGTCCAATCCTCCATC 60.181 47.826 4.80 0.00 0.00 3.51
1417 2381 6.624423 AGCTAAATGATGAAAACGAAGCAAT 58.376 32.000 0.00 0.00 0.00 3.56
1493 2457 3.565063 CACGGTCAATCATGGCATTATGA 59.435 43.478 0.00 0.00 41.00 2.15
1545 2509 2.419673 TCGTAAATTCAGCATGTGCCAG 59.580 45.455 0.57 0.00 43.38 4.85
1555 2519 6.910536 AAGCCATACTTCTCGTAAATTCAG 57.089 37.500 0.00 0.00 30.77 3.02
1570 2534 4.216411 TGTCCCTTAGTTGAAGCCATAC 57.784 45.455 0.00 0.00 33.36 2.39
1652 2616 8.445275 TGTGAAACATTTGAAGCTCTTAAGTA 57.555 30.769 1.63 0.00 45.67 2.24
2053 3018 3.439476 TCCAGTAGAGTACTTCGCAGTTC 59.561 47.826 0.00 0.00 36.76 3.01
2113 3079 9.605275 TGGAAACTTCTATACATTGAGATTCTG 57.395 33.333 0.00 0.00 0.00 3.02
2137 3103 2.092968 TGCTAATACTTCTGGGCACTGG 60.093 50.000 0.00 0.00 0.00 4.00
2145 3111 7.637229 CACCAAGATGATTGCTAATACTTCTG 58.363 38.462 0.00 0.00 0.00 3.02
2146 3112 6.261826 GCACCAAGATGATTGCTAATACTTCT 59.738 38.462 0.00 0.00 32.00 2.85
2164 3130 7.148407 ACGATTCTAAGAACTAAATGCACCAAG 60.148 37.037 0.00 0.00 0.00 3.61
2199 3165 1.153086 GCCAGGCCATGTCCTACAG 60.153 63.158 5.01 0.00 33.95 2.74
2239 3205 9.466497 ACCATGATCTAATGACAAAACATACTT 57.534 29.630 0.00 0.00 0.00 2.24
2654 3628 0.802494 GTTAGGTCCATGGTTGTGCG 59.198 55.000 12.58 0.00 0.00 5.34
2688 3662 9.130312 GACAGTAGAGACAGTACTTAACAAATG 57.870 37.037 0.00 0.00 0.00 2.32
2699 3673 7.113437 AGCTCATAAAGACAGTAGAGACAGTA 58.887 38.462 0.00 0.00 0.00 2.74
2704 3678 6.591834 GCAAAAGCTCATAAAGACAGTAGAGA 59.408 38.462 0.00 0.00 0.00 3.10
2720 3694 4.698583 ATTGATCTCTGTGCAAAAGCTC 57.301 40.909 0.00 0.00 0.00 4.09
2754 3728 1.070376 CACATCAGATAATGCACGCCG 60.070 52.381 0.00 0.00 0.00 6.46
2762 3736 9.911788 AAAACCAGACTAATCACATCAGATAAT 57.088 29.630 0.00 0.00 0.00 1.28
2778 3752 2.285977 GTCGGTGTCAAAAACCAGACT 58.714 47.619 9.03 0.00 37.80 3.24
2795 3769 2.736721 CACACAACAGTGAATAGGGTCG 59.263 50.000 0.00 0.00 42.05 4.79
3060 4034 5.565439 GCAGTGAAGTAGTGGCAATGAAAAT 60.565 40.000 0.00 0.00 29.93 1.82
3414 4388 3.695830 ACTTCAAAAGCACTCGGGATA 57.304 42.857 0.00 0.00 0.00 2.59
3488 4462 5.626142 TGCTGATTAAGGGGCGAAATTATA 58.374 37.500 0.00 0.00 0.00 0.98
3493 4467 2.208132 TTGCTGATTAAGGGGCGAAA 57.792 45.000 0.00 0.00 0.00 3.46
3494 4468 1.816224 GTTTGCTGATTAAGGGGCGAA 59.184 47.619 0.00 0.00 0.00 4.70
3495 4469 1.271652 TGTTTGCTGATTAAGGGGCGA 60.272 47.619 0.00 0.00 0.00 5.54
3496 4470 1.133025 CTGTTTGCTGATTAAGGGGCG 59.867 52.381 0.00 0.00 0.00 6.13
3497 4471 2.171003 ACTGTTTGCTGATTAAGGGGC 58.829 47.619 0.00 0.00 0.00 5.80
3498 4472 4.082125 AGAACTGTTTGCTGATTAAGGGG 58.918 43.478 0.00 0.00 0.00 4.79
3499 4473 4.520492 ACAGAACTGTTTGCTGATTAAGGG 59.480 41.667 14.08 0.00 41.83 3.95
3500 4474 5.239306 TCACAGAACTGTTTGCTGATTAAGG 59.761 40.000 14.08 0.00 42.83 2.69
3501 4475 6.203530 TCTCACAGAACTGTTTGCTGATTAAG 59.796 38.462 14.08 7.14 42.83 1.85
3502 4476 6.054941 TCTCACAGAACTGTTTGCTGATTAA 58.945 36.000 14.08 0.00 42.83 1.40
3503 4477 5.610398 TCTCACAGAACTGTTTGCTGATTA 58.390 37.500 14.08 1.57 42.83 1.75
3504 4478 4.454678 TCTCACAGAACTGTTTGCTGATT 58.545 39.130 14.08 0.00 42.83 2.57
3505 4479 4.077300 TCTCACAGAACTGTTTGCTGAT 57.923 40.909 14.08 0.00 42.83 2.90
3506 4480 3.541996 TCTCACAGAACTGTTTGCTGA 57.458 42.857 14.08 5.79 42.83 4.26
3507 4481 4.825546 ATTCTCACAGAACTGTTTGCTG 57.174 40.909 4.63 7.47 42.83 4.41
3508 4482 5.128919 AGAATTCTCACAGAACTGTTTGCT 58.871 37.500 0.88 0.00 42.83 3.91
3509 4483 5.429957 AGAATTCTCACAGAACTGTTTGC 57.570 39.130 0.88 0.00 42.83 3.68
3587 4585 5.551760 AATCATTAGACAAAGCTCCAACG 57.448 39.130 0.00 0.00 0.00 4.10
3684 4683 9.831737 CTCCTACAGTTATTTCATGTTCAAAAG 57.168 33.333 0.00 0.00 0.00 2.27
3866 4868 9.833917 AGGTAAGAAGTTTTATATTACTCTGGC 57.166 33.333 0.00 0.00 0.00 4.85
3915 4917 1.067821 GCCGATTCATTCTCCTCGTCT 59.932 52.381 0.00 0.00 0.00 4.18
3918 4920 1.067669 TGAGCCGATTCATTCTCCTCG 59.932 52.381 0.00 0.00 0.00 4.63
4093 5103 4.876107 GTCCTGTCAAGTGAGAGAAAAACA 59.124 41.667 7.02 0.00 37.62 2.83
4194 5204 1.794714 ATGTAGCACCAGGACTAGGG 58.205 55.000 0.00 0.00 0.00 3.53
4227 5237 5.067674 TCCTTTCAATGTCTGACTTTGGTTG 59.932 40.000 26.42 18.51 34.96 3.77
4296 5306 2.744741 GTTAGAGAAGTTTGGCAGCTCC 59.255 50.000 0.00 0.00 0.00 4.70
4477 5488 7.985589 TCCTCCCATAAAGGATAAGGATAAAC 58.014 38.462 0.00 0.00 38.01 2.01
4497 5508 5.645497 GGACATATGTCAATAATGCTCCTCC 59.355 44.000 31.51 10.71 46.47 4.30
4498 5509 6.233434 TGGACATATGTCAATAATGCTCCTC 58.767 40.000 31.51 13.64 46.47 3.71
4499 5510 6.191657 TGGACATATGTCAATAATGCTCCT 57.808 37.500 31.51 0.00 46.47 3.69
4517 5528 3.419943 TGCTGCAGAAACAATATGGACA 58.580 40.909 20.43 0.00 0.00 4.02
4551 5562 5.010012 AGCAGACTCAAACAACCTTTTATGG 59.990 40.000 0.00 0.00 0.00 2.74
4670 5681 5.529581 ACCAAAGAAAACAATCGGTGAAT 57.470 34.783 0.00 0.00 0.00 2.57
4671 5682 4.993029 ACCAAAGAAAACAATCGGTGAA 57.007 36.364 0.00 0.00 0.00 3.18
4790 5801 6.930722 ACATGCAAAAGAAGGAATACAAAAGG 59.069 34.615 0.00 0.00 0.00 3.11
4794 5805 8.121305 ACATACATGCAAAAGAAGGAATACAA 57.879 30.769 0.00 0.00 0.00 2.41
4795 5806 7.701539 ACATACATGCAAAAGAAGGAATACA 57.298 32.000 0.00 0.00 0.00 2.29
4809 5820 2.698274 ACCACGGAGATACATACATGCA 59.302 45.455 0.00 0.00 0.00 3.96
4810 5821 3.386768 ACCACGGAGATACATACATGC 57.613 47.619 0.00 0.00 0.00 4.06
4856 5867 6.293735 CGAAAACAACCAAAGAAGGCACTATA 60.294 38.462 0.00 0.00 38.49 1.31
4868 5879 4.785511 TGAGTTTCCGAAAACAACCAAA 57.214 36.364 0.00 0.00 45.94 3.28
4943 5954 3.119245 GCTGTAGATTGACGAGGTGGTAA 60.119 47.826 0.00 0.00 0.00 2.85
5019 6030 4.392138 GTGTATCTGTAGGTCTTTGGCAAC 59.608 45.833 0.00 0.00 0.00 4.17
5263 6275 2.367030 TCAAAAATGGCTTGGCATCG 57.633 45.000 10.05 0.92 0.00 3.84
5268 6280 6.930722 AGTACTGAAATTCAAAAATGGCTTGG 59.069 34.615 0.00 0.00 0.00 3.61
5291 6306 7.333528 ACAAAATCAGTTGTCAATGTACAGT 57.666 32.000 0.33 0.00 37.10 3.55
5293 6308 8.031864 ACAAACAAAATCAGTTGTCAATGTACA 58.968 29.630 0.00 0.00 40.86 2.90
5324 6339 2.198827 CCAAACAGTGGCATCCTACA 57.801 50.000 0.00 0.00 41.72 2.74
5372 6387 5.034852 TCTGATGTGTTGGACTTCTGAAA 57.965 39.130 0.00 0.00 35.24 2.69
5568 6583 7.388776 TCACACTCAAAACTCAAAGATCTATGG 59.611 37.037 0.00 0.00 0.00 2.74
5585 6600 8.677300 GCTTTTCAGGATATTAATCACACTCAA 58.323 33.333 0.00 0.00 33.41 3.02
5586 6601 8.049117 AGCTTTTCAGGATATTAATCACACTCA 58.951 33.333 0.00 0.00 33.41 3.41
5587 6602 8.443953 AGCTTTTCAGGATATTAATCACACTC 57.556 34.615 0.00 0.00 33.41 3.51
5588 6603 9.331282 GTAGCTTTTCAGGATATTAATCACACT 57.669 33.333 0.00 0.00 33.41 3.55
5982 6997 7.609760 TCTCGTTATTAAGCAAACATCATGT 57.390 32.000 0.00 0.00 0.00 3.21
5988 7003 6.647481 TGTAGCTTCTCGTTATTAAGCAAACA 59.353 34.615 8.78 9.00 46.35 2.83
6021 7036 2.295885 GCAGCTATCTGGTCAAATGCT 58.704 47.619 0.00 0.00 40.65 3.79
6236 7253 8.220755 AGTTAGACAGCATAAAGTGAAAAACA 57.779 30.769 0.00 0.00 0.00 2.83
6278 7295 3.840124 AAGCTTAACCTTCCTATCGGG 57.160 47.619 0.00 0.00 0.00 5.14
6337 7354 6.984474 TCTACTCAAAAGAAGATGAACGTGTT 59.016 34.615 0.00 0.00 0.00 3.32
6420 7437 6.096846 AGCAAAAGAACAAGTTGGTATGAAGT 59.903 34.615 7.96 0.00 31.57 3.01
6421 7438 6.507023 AGCAAAAGAACAAGTTGGTATGAAG 58.493 36.000 7.96 0.00 31.57 3.02
6422 7439 6.463995 AGCAAAAGAACAAGTTGGTATGAA 57.536 33.333 7.96 0.00 31.57 2.57
6423 7440 6.096141 TGAAGCAAAAGAACAAGTTGGTATGA 59.904 34.615 7.96 0.00 32.94 2.15
6424 7441 6.198966 GTGAAGCAAAAGAACAAGTTGGTATG 59.801 38.462 7.96 0.00 32.94 2.39
6425 7442 6.273071 GTGAAGCAAAAGAACAAGTTGGTAT 58.727 36.000 7.96 0.00 32.94 2.73
6426 7443 5.393678 GGTGAAGCAAAAGAACAAGTTGGTA 60.394 40.000 7.96 0.00 32.94 3.25
6453 7473 3.875727 TGCAATGAAACCAACACCATTTG 59.124 39.130 0.00 0.00 0.00 2.32
6454 7474 4.148128 TGCAATGAAACCAACACCATTT 57.852 36.364 0.00 0.00 0.00 2.32
6455 7475 3.834489 TGCAATGAAACCAACACCATT 57.166 38.095 0.00 0.00 0.00 3.16
6533 7553 5.317733 TGTTGTTGTTGTTGTAGAAAGGG 57.682 39.130 0.00 0.00 0.00 3.95
6534 7554 6.153067 TGTTGTTGTTGTTGTTGTAGAAAGG 58.847 36.000 0.00 0.00 0.00 3.11
6535 7555 7.168302 TGTTGTTGTTGTTGTTGTTGTAGAAAG 59.832 33.333 0.00 0.00 0.00 2.62
6536 7556 6.978659 TGTTGTTGTTGTTGTTGTTGTAGAAA 59.021 30.769 0.00 0.00 0.00 2.52
6537 7557 6.504398 TGTTGTTGTTGTTGTTGTTGTAGAA 58.496 32.000 0.00 0.00 0.00 2.10
6538 7558 6.073327 TGTTGTTGTTGTTGTTGTTGTAGA 57.927 33.333 0.00 0.00 0.00 2.59
6539 7559 6.755461 TTGTTGTTGTTGTTGTTGTTGTAG 57.245 33.333 0.00 0.00 0.00 2.74
6540 7560 6.292381 GCTTTGTTGTTGTTGTTGTTGTTGTA 60.292 34.615 0.00 0.00 0.00 2.41
6541 7561 5.503194 GCTTTGTTGTTGTTGTTGTTGTTGT 60.503 36.000 0.00 0.00 0.00 3.32
6542 7562 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
6543 7563 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
6544 7564 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
6545 7565 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
6546 7566 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
6547 7567 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
6548 7568 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
6549 7569 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
6550 7570 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
6551 7571 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
6552 7572 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
6553 7573 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
6554 7574 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
6555 7575 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
6556 7576 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
6557 7577 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
6558 7578 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
6559 7579 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
6560 7580 4.620982 CTTGTTTGGGACTAAAGGCTTTG 58.379 43.478 22.32 13.97 0.00 2.77
6561 7581 3.069586 GCTTGTTTGGGACTAAAGGCTTT 59.930 43.478 17.76 17.76 0.00 3.51
6562 7582 2.628178 GCTTGTTTGGGACTAAAGGCTT 59.372 45.455 0.00 0.00 0.00 4.35
6563 7583 2.239400 GCTTGTTTGGGACTAAAGGCT 58.761 47.619 0.00 0.00 0.00 4.58
6564 7584 1.272490 GGCTTGTTTGGGACTAAAGGC 59.728 52.381 0.00 0.00 0.00 4.35
6565 7585 2.876581 AGGCTTGTTTGGGACTAAAGG 58.123 47.619 0.00 0.00 0.00 3.11
6566 7586 4.937201 AAAGGCTTGTTTGGGACTAAAG 57.063 40.909 0.00 0.00 0.00 1.85
6567 7587 4.279922 GCTAAAGGCTTGTTTGGGACTAAA 59.720 41.667 0.00 0.00 38.06 1.85
6568 7588 3.824443 GCTAAAGGCTTGTTTGGGACTAA 59.176 43.478 0.00 0.00 38.06 2.24
6569 7589 3.418047 GCTAAAGGCTTGTTTGGGACTA 58.582 45.455 0.00 0.00 38.06 2.59
6570 7590 2.239400 GCTAAAGGCTTGTTTGGGACT 58.761 47.619 0.00 0.00 38.06 3.85
6571 7591 1.272490 GGCTAAAGGCTTGTTTGGGAC 59.728 52.381 0.00 0.00 41.46 4.46
6572 7592 1.627864 GGCTAAAGGCTTGTTTGGGA 58.372 50.000 0.00 0.00 41.46 4.37
6573 7593 0.608130 GGGCTAAAGGCTTGTTTGGG 59.392 55.000 0.00 0.00 41.46 4.12
6574 7594 1.632589 AGGGCTAAAGGCTTGTTTGG 58.367 50.000 0.00 0.00 41.46 3.28
6575 7595 3.321968 AGAAAGGGCTAAAGGCTTGTTTG 59.678 43.478 0.00 0.00 41.46 2.93
6576 7596 3.576861 AGAAAGGGCTAAAGGCTTGTTT 58.423 40.909 0.00 1.93 41.46 2.83
6577 7597 3.244887 AGAAAGGGCTAAAGGCTTGTT 57.755 42.857 0.00 0.00 41.46 2.83
6578 7598 2.980246 AGAAAGGGCTAAAGGCTTGT 57.020 45.000 0.00 0.00 41.46 3.16
6579 7599 3.686016 TGTAGAAAGGGCTAAAGGCTTG 58.314 45.455 0.00 0.00 41.46 4.01
6580 7600 3.308473 CCTGTAGAAAGGGCTAAAGGCTT 60.308 47.826 0.00 0.00 38.64 4.35
6581 7601 2.239907 CCTGTAGAAAGGGCTAAAGGCT 59.760 50.000 3.36 0.00 38.64 4.58
6582 7602 2.026169 ACCTGTAGAAAGGGCTAAAGGC 60.026 50.000 7.39 0.00 45.91 4.35
6583 7603 4.010349 CAACCTGTAGAAAGGGCTAAAGG 58.990 47.826 6.16 6.16 46.91 3.11
6584 7604 3.440522 GCAACCTGTAGAAAGGGCTAAAG 59.559 47.826 0.00 0.00 42.11 1.85
6585 7605 3.181438 TGCAACCTGTAGAAAGGGCTAAA 60.181 43.478 0.00 0.00 42.11 1.85
6586 7606 2.373836 TGCAACCTGTAGAAAGGGCTAA 59.626 45.455 0.00 0.00 42.11 3.09
6587 7607 1.982226 TGCAACCTGTAGAAAGGGCTA 59.018 47.619 0.00 0.00 42.11 3.93
6588 7608 0.771127 TGCAACCTGTAGAAAGGGCT 59.229 50.000 0.00 0.00 42.11 5.19
6589 7609 1.616159 TTGCAACCTGTAGAAAGGGC 58.384 50.000 0.00 0.00 42.11 5.19
6630 7650 1.258445 AAGTGGCCAGGGTCGACTAG 61.258 60.000 16.46 5.52 0.00 2.57
6952 7972 1.072266 ACAGAAGGCCCATGGTGTTA 58.928 50.000 11.73 0.00 0.00 2.41
6958 7978 1.619654 TTGTTCACAGAAGGCCCATG 58.380 50.000 0.00 0.00 0.00 3.66
6961 7981 2.755103 CCTATTTGTTCACAGAAGGCCC 59.245 50.000 0.00 0.00 0.00 5.80
6993 8013 1.170442 CATGAGTGATGTGCCAAGCA 58.830 50.000 0.00 0.00 35.60 3.91
7076 8101 6.484288 TGTTGAACTCCTGAATATCACCAAT 58.516 36.000 0.00 0.00 0.00 3.16
7230 8255 3.955650 ATGGATAGTTAACCGATCCCG 57.044 47.619 24.40 0.00 38.75 5.14
7270 8300 9.832445 TGTCTAACATAGGGAGAAAATTGTATC 57.168 33.333 0.00 0.00 0.00 2.24
7276 8306 6.599638 GCAGTTGTCTAACATAGGGAGAAAAT 59.400 38.462 0.00 0.00 39.30 1.82
7366 8396 0.244994 CGAGAACAGCCACTGTAGCT 59.755 55.000 0.00 0.00 44.62 3.32
7369 8399 4.988065 GCGAGAACAGCCACTGTA 57.012 55.556 0.00 0.00 44.62 2.74
7398 8428 4.183865 GTCAGTATGTAGCAGCATTGTCA 58.816 43.478 0.00 0.00 37.40 3.58
7413 8443 1.472480 GGTTTGCGCCATTGTCAGTAT 59.528 47.619 4.18 0.00 0.00 2.12
7548 8578 3.014036 ACGCAAAGACGTGCACAG 58.986 55.556 18.64 12.16 46.28 3.66
7580 8610 6.886459 CCAATAGAGATACCAATAACATGGGG 59.114 42.308 0.00 0.00 45.18 4.96
7643 8673 3.802948 AATACTGAACGGGTCTGCTAG 57.197 47.619 0.00 0.00 0.00 3.42
7718 8748 7.717875 CCCATATTCTTTGGCATTTCATTTCAT 59.282 33.333 0.00 0.00 32.60 2.57
7726 8756 6.579850 AAATCCCCATATTCTTTGGCATTT 57.420 33.333 0.00 0.00 32.60 2.32
8014 9045 4.148825 ATCCACCGTCGCAGCTCC 62.149 66.667 0.00 0.00 0.00 4.70
8023 9054 2.036731 TGGTCGAGGATCCACCGT 59.963 61.111 15.82 0.00 44.74 4.83
8119 9150 2.276309 GAGCCATCAAGGACCTGGGG 62.276 65.000 0.00 0.00 41.22 4.96
8160 9191 3.141522 AACTCGAACGACGGCCACA 62.142 57.895 2.24 0.00 42.82 4.17
8236 9267 0.179094 CAATTGGCCGCATGCAGATT 60.179 50.000 19.57 6.81 43.89 2.40
8284 9315 4.426416 ACATTACACGCGCTGATTAGTTA 58.574 39.130 5.73 0.00 0.00 2.24
8295 9326 6.033196 GCTACTGGTAATATACATTACACGCG 59.967 42.308 3.53 3.53 45.66 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.