Multiple sequence alignment - TraesCS1A01G094600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G094600 chr1A 100.000 4591 0 0 1 4591 89419679 89424269 0.000000e+00 8479.0
1 TraesCS1A01G094600 chr1A 96.021 377 15 0 1 377 298051287 298051663 8.440000e-172 614.0
2 TraesCS1A01G094600 chr1A 96.021 377 14 1 1 377 113589420 113589795 3.040000e-171 612.0
3 TraesCS1A01G094600 chr1A 95.767 378 15 1 1 377 546759025 546759402 3.930000e-170 608.0
4 TraesCS1A01G094600 chr1A 83.929 280 36 7 3238 3514 590469107 590468834 4.560000e-65 259.0
5 TraesCS1A01G094600 chr1A 85.000 160 18 4 4428 4584 545772973 545773129 1.710000e-34 158.0
6 TraesCS1A01G094600 chr1A 80.682 176 20 9 1127 1290 10399075 10399248 1.730000e-24 124.0
7 TraesCS1A01G094600 chr1A 74.648 284 52 14 1124 1393 527455439 527455162 1.750000e-19 108.0
8 TraesCS1A01G094600 chr1A 94.203 69 3 1 2925 2993 447743617 447743550 2.260000e-18 104.0
9 TraesCS1A01G094600 chr1A 91.803 61 4 1 4500 4559 419746706 419746646 2.940000e-12 84.2
10 TraesCS1A01G094600 chr7B 92.968 3484 212 20 1127 4588 668419344 668422816 0.000000e+00 5046.0
11 TraesCS1A01G094600 chr7B 85.465 172 25 0 4415 4586 669961108 669961279 3.650000e-41 180.0
12 TraesCS1A01G094600 chr1D 91.536 3497 258 18 1127 4591 490790902 490787412 0.000000e+00 4783.0
13 TraesCS1A01G094600 chr1D 93.029 746 41 6 376 1118 387956369 387955632 0.000000e+00 1079.0
14 TraesCS1A01G094600 chr1D 92.533 750 48 7 374 1118 393529351 393530097 0.000000e+00 1068.0
15 TraesCS1A01G094600 chr6B 93.413 2353 142 11 2240 4588 166928392 166930735 0.000000e+00 3474.0
16 TraesCS1A01G094600 chr6B 82.026 612 74 25 2916 3515 86871198 86870611 5.340000e-134 488.0
17 TraesCS1A01G094600 chr6B 82.667 375 59 5 3145 3515 66731258 66731630 1.230000e-85 327.0
18 TraesCS1A01G094600 chr6B 83.030 330 41 12 3862 4187 66732214 66732532 7.520000e-73 285.0
19 TraesCS1A01G094600 chr6B 80.000 325 49 11 3533 3847 33140115 33140433 4.620000e-55 226.0
20 TraesCS1A01G094600 chr6B 85.714 175 24 1 4415 4589 66732781 66732954 2.820000e-42 183.0
21 TraesCS1A01G094600 chr6B 86.139 101 13 1 3413 3513 68961227 68961326 1.750000e-19 108.0
22 TraesCS1A01G094600 chr4A 94.118 2091 115 7 2504 4591 700551204 700549119 0.000000e+00 3173.0
23 TraesCS1A01G094600 chr4A 92.543 1408 87 9 1127 2517 700552629 700551223 0.000000e+00 2002.0
24 TraesCS1A01G094600 chr4A 96.021 377 15 0 1 377 168575586 168575962 8.440000e-172 614.0
25 TraesCS1A01G094600 chr4A 80.682 616 80 22 2916 3515 703787571 703788163 4.220000e-120 442.0
26 TraesCS1A01G094600 chr2A 92.411 2161 130 19 2435 4591 7241707 7243837 0.000000e+00 3051.0
27 TraesCS1A01G094600 chr2A 90.415 1012 82 5 1127 2123 7240686 7241697 0.000000e+00 1317.0
28 TraesCS1A01G094600 chr2A 74.640 556 117 21 1310 1854 15594978 15595520 1.660000e-54 224.0
29 TraesCS1A01G094600 chr2A 83.260 227 36 2 4365 4589 4667009 4666783 1.670000e-49 207.0
30 TraesCS1A01G094600 chr2A 84.615 143 15 3 2104 2246 198555965 198556100 8.010000e-28 135.0
31 TraesCS1A01G094600 chr2A 82.692 104 17 1 1127 1229 696439748 696439851 1.760000e-14 91.6
32 TraesCS1A01G094600 chr2A 82.692 104 17 1 1127 1229 696644669 696644772 1.760000e-14 91.6
33 TraesCS1A01G094600 chr5D 93.076 751 45 4 373 1118 174315340 174314592 0.000000e+00 1092.0
34 TraesCS1A01G094600 chr5D 92.308 78 5 1 2916 2993 448053505 448053429 4.860000e-20 110.0
35 TraesCS1A01G094600 chr5D 80.153 131 26 0 4453 4583 545784420 545784550 1.050000e-16 99.0
36 TraesCS1A01G094600 chr5D 94.444 36 2 0 1900 1935 530604262 530604297 6.420000e-04 56.5
37 TraesCS1A01G094600 chr6D 92.819 752 47 5 376 1121 58444215 58443465 0.000000e+00 1083.0
38 TraesCS1A01G094600 chr6D 95.756 377 16 0 1 377 23816368 23815992 3.930000e-170 608.0
39 TraesCS1A01G094600 chr6D 80.617 227 41 3 4366 4589 466899694 466899468 6.110000e-39 172.0
40 TraesCS1A01G094600 chr6D 81.683 202 32 5 4366 4563 56464513 56464713 3.680000e-36 163.0
41 TraesCS1A01G094600 chr6D 95.349 43 2 0 4517 4559 40493777 40493735 8.240000e-08 69.4
42 TraesCS1A01G094600 chr6D 93.478 46 3 0 4517 4562 201273869 201273914 8.240000e-08 69.4
43 TraesCS1A01G094600 chr2D 92.790 749 49 4 370 1118 367590315 367589572 0.000000e+00 1079.0
44 TraesCS1A01G094600 chr2D 92.617 745 51 3 376 1118 111146339 111145597 0.000000e+00 1068.0
45 TraesCS1A01G094600 chr2D 81.287 342 48 11 3178 3514 26338841 26338511 3.520000e-66 263.0
46 TraesCS1A01G094600 chr5B 92.876 744 50 3 377 1118 448102975 448102233 0.000000e+00 1077.0
47 TraesCS1A01G094600 chr5B 85.426 693 69 10 3532 4200 683157503 683156819 0.000000e+00 691.0
48 TraesCS1A01G094600 chr5B 84.914 232 27 7 3286 3515 683158424 683158199 1.280000e-55 228.0
49 TraesCS1A01G094600 chr7D 92.761 746 51 3 376 1118 97945137 97944392 0.000000e+00 1075.0
50 TraesCS1A01G094600 chr7D 91.026 78 6 1 2916 2993 86212800 86212724 2.260000e-18 104.0
51 TraesCS1A01G094600 chr7D 73.098 368 63 21 1125 1459 590286425 590286061 1.050000e-16 99.0
52 TraesCS1A01G094600 chr4B 92.430 753 51 5 371 1118 20752188 20751437 0.000000e+00 1070.0
53 TraesCS1A01G094600 chr4B 84.542 524 65 11 2925 3441 619584565 619585079 5.300000e-139 505.0
54 TraesCS1A01G094600 chr4B 82.342 555 79 10 1518 2072 265544091 265544626 9.000000e-127 464.0
55 TraesCS1A01G094600 chr4B 85.429 350 36 4 1124 1459 265543711 265544059 2.630000e-92 350.0
56 TraesCS1A01G094600 chr4B 78.443 334 53 13 3849 4181 625132092 625132407 2.800000e-47 200.0
57 TraesCS1A01G094600 chr4B 84.962 133 18 2 4453 4584 4863306 4863175 2.880000e-27 134.0
58 TraesCS1A01G094600 chr4B 81.818 165 25 5 1126 1288 481223721 481223560 2.880000e-27 134.0
59 TraesCS1A01G094600 chr3B 82.726 961 98 34 1127 2072 16201233 16200326 0.000000e+00 793.0
60 TraesCS1A01G094600 chr3B 82.018 228 39 2 4364 4589 754159203 754158976 4.690000e-45 193.0
61 TraesCS1A01G094600 chr3B 77.333 300 42 17 3529 3821 32909261 32908981 2.210000e-33 154.0
62 TraesCS1A01G094600 chr5A 86.885 610 54 6 3532 4120 23636263 23635659 0.000000e+00 660.0
63 TraesCS1A01G094600 chr5A 81.659 229 38 4 4364 4589 639611414 639611641 2.180000e-43 187.0
64 TraesCS1A01G094600 chr5A 78.333 300 40 17 3530 3822 474986878 474987159 2.200000e-38 171.0
65 TraesCS1A01G094600 chr7A 96.286 377 14 0 1 377 563020029 563019653 1.810000e-173 619.0
66 TraesCS1A01G094600 chr7A 96.021 377 15 0 1 377 440431213 440430837 8.440000e-172 614.0
67 TraesCS1A01G094600 chr7A 96.021 377 15 0 1 377 526637198 526637574 8.440000e-172 614.0
68 TraesCS1A01G094600 chr7A 83.772 228 35 2 4364 4589 160154994 160154767 1.000000e-51 215.0
69 TraesCS1A01G094600 chr7A 89.764 127 12 1 3074 3199 583785560 583785434 1.320000e-35 161.0
70 TraesCS1A01G094600 chr7A 92.308 78 5 1 2916 2993 196093326 196093402 4.860000e-20 110.0
71 TraesCS1A01G094600 chr7A 92.308 78 5 1 2916 2993 197278329 197278253 4.860000e-20 110.0
72 TraesCS1A01G094600 chr6A 95.756 377 16 0 1 377 178718632 178718256 3.930000e-170 608.0
73 TraesCS1A01G094600 chr6A 82.447 376 58 7 3145 3515 35919526 35919898 5.730000e-84 322.0
74 TraesCS1A01G094600 chr6A 81.844 358 54 9 3851 4203 35921045 35921396 1.620000e-74 291.0
75 TraesCS1A01G094600 chr6A 85.526 228 31 2 4364 4589 32362382 32362155 2.140000e-58 237.0
76 TraesCS1A01G094600 chr6A 85.526 228 31 2 4364 4589 32466806 32466579 2.140000e-58 237.0
77 TraesCS1A01G094600 chr6A 78.443 334 48 15 3851 4181 110907431 110907743 3.620000e-46 196.0
78 TraesCS1A01G094600 chr6A 76.596 329 47 17 3532 3847 110906818 110907129 2.210000e-33 154.0
79 TraesCS1A01G094600 chr2B 82.979 611 70 21 2916 3515 727374100 727373513 5.260000e-144 521.0
80 TraesCS1A01G094600 chr2B 82.653 98 13 3 4199 4295 565987726 565987820 2.940000e-12 84.2
81 TraesCS1A01G094600 chrUn 83.554 377 50 7 3145 3515 100712477 100712107 4.400000e-90 342.0
82 TraesCS1A01G094600 chrUn 82.303 356 48 9 3851 4201 100710974 100710629 1.250000e-75 294.0
83 TraesCS1A01G094600 chrUn 92.308 78 5 1 2916 2993 479330496 479330572 4.860000e-20 110.0
84 TraesCS1A01G094600 chrUn 97.778 45 1 0 4517 4561 90398529 90398485 1.370000e-10 78.7
85 TraesCS1A01G094600 chrUn 97.778 45 1 0 4517 4561 348780383 348780427 1.370000e-10 78.7
86 TraesCS1A01G094600 chr3D 84.000 225 27 7 4365 4589 612198246 612198031 1.670000e-49 207.0
87 TraesCS1A01G094600 chr3D 91.026 78 6 1 2916 2993 559721327 559721251 2.260000e-18 104.0
88 TraesCS1A01G094600 chr1B 77.778 333 54 13 3849 4180 588973625 588973312 2.180000e-43 187.0
89 TraesCS1A01G094600 chr1B 77.177 333 56 13 3849 4180 606421358 606421045 4.720000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G094600 chr1A 89419679 89424269 4590 False 8479.0 8479 100.000000 1 4591 1 chr1A.!!$F2 4590
1 TraesCS1A01G094600 chr7B 668419344 668422816 3472 False 5046.0 5046 92.968000 1127 4588 1 chr7B.!!$F1 3461
2 TraesCS1A01G094600 chr1D 490787412 490790902 3490 True 4783.0 4783 91.536000 1127 4591 1 chr1D.!!$R2 3464
3 TraesCS1A01G094600 chr1D 387955632 387956369 737 True 1079.0 1079 93.029000 376 1118 1 chr1D.!!$R1 742
4 TraesCS1A01G094600 chr1D 393529351 393530097 746 False 1068.0 1068 92.533000 374 1118 1 chr1D.!!$F1 744
5 TraesCS1A01G094600 chr6B 166928392 166930735 2343 False 3474.0 3474 93.413000 2240 4588 1 chr6B.!!$F3 2348
6 TraesCS1A01G094600 chr6B 86870611 86871198 587 True 488.0 488 82.026000 2916 3515 1 chr6B.!!$R1 599
7 TraesCS1A01G094600 chr6B 66731258 66732954 1696 False 265.0 327 83.803667 3145 4589 3 chr6B.!!$F4 1444
8 TraesCS1A01G094600 chr4A 700549119 700552629 3510 True 2587.5 3173 93.330500 1127 4591 2 chr4A.!!$R1 3464
9 TraesCS1A01G094600 chr4A 703787571 703788163 592 False 442.0 442 80.682000 2916 3515 1 chr4A.!!$F2 599
10 TraesCS1A01G094600 chr2A 7240686 7243837 3151 False 2184.0 3051 91.413000 1127 4591 2 chr2A.!!$F5 3464
11 TraesCS1A01G094600 chr2A 15594978 15595520 542 False 224.0 224 74.640000 1310 1854 1 chr2A.!!$F1 544
12 TraesCS1A01G094600 chr5D 174314592 174315340 748 True 1092.0 1092 93.076000 373 1118 1 chr5D.!!$R1 745
13 TraesCS1A01G094600 chr6D 58443465 58444215 750 True 1083.0 1083 92.819000 376 1121 1 chr6D.!!$R3 745
14 TraesCS1A01G094600 chr2D 367589572 367590315 743 True 1079.0 1079 92.790000 370 1118 1 chr2D.!!$R3 748
15 TraesCS1A01G094600 chr2D 111145597 111146339 742 True 1068.0 1068 92.617000 376 1118 1 chr2D.!!$R2 742
16 TraesCS1A01G094600 chr5B 448102233 448102975 742 True 1077.0 1077 92.876000 377 1118 1 chr5B.!!$R1 741
17 TraesCS1A01G094600 chr5B 683156819 683158424 1605 True 459.5 691 85.170000 3286 4200 2 chr5B.!!$R2 914
18 TraesCS1A01G094600 chr7D 97944392 97945137 745 True 1075.0 1075 92.761000 376 1118 1 chr7D.!!$R2 742
19 TraesCS1A01G094600 chr4B 20751437 20752188 751 True 1070.0 1070 92.430000 371 1118 1 chr4B.!!$R2 747
20 TraesCS1A01G094600 chr4B 619584565 619585079 514 False 505.0 505 84.542000 2925 3441 1 chr4B.!!$F1 516
21 TraesCS1A01G094600 chr4B 265543711 265544626 915 False 407.0 464 83.885500 1124 2072 2 chr4B.!!$F3 948
22 TraesCS1A01G094600 chr3B 16200326 16201233 907 True 793.0 793 82.726000 1127 2072 1 chr3B.!!$R1 945
23 TraesCS1A01G094600 chr5A 23635659 23636263 604 True 660.0 660 86.885000 3532 4120 1 chr5A.!!$R1 588
24 TraesCS1A01G094600 chr6A 35919526 35921396 1870 False 306.5 322 82.145500 3145 4203 2 chr6A.!!$F1 1058
25 TraesCS1A01G094600 chr2B 727373513 727374100 587 True 521.0 521 82.979000 2916 3515 1 chr2B.!!$R1 599
26 TraesCS1A01G094600 chrUn 100710629 100712477 1848 True 318.0 342 82.928500 3145 4201 2 chrUn.!!$R2 1056

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 0.036765 TCCCAACAAGCGCTATCGTT 60.037 50.0 12.05 12.35 38.14 3.85 F
538 552 0.391263 ATTTTCGCGTCACCCTCTCC 60.391 55.0 5.77 0.00 0.00 3.71 F
1090 1105 0.825010 AGGCACACTTTGAAGCAGGG 60.825 55.0 0.00 0.00 0.00 4.45 F
1890 1929 0.249573 GCTGCATCTCTCCTCTGCTC 60.250 60.0 0.00 0.00 36.84 4.26 F
1891 1930 0.390124 CTGCATCTCTCCTCTGCTCC 59.610 60.0 0.00 0.00 36.84 4.70 F
1895 1934 0.823356 ATCTCTCCTCTGCTCCGAGC 60.823 60.0 13.81 13.81 42.82 5.03 F
2553 2642 0.968405 TGGATTTTGCCTGCAACTCC 59.032 50.0 18.89 18.89 37.96 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1075 1090 0.178953 ATGGCCCTGCTTCAAAGTGT 60.179 50.000 0.0 0.0 0.00 3.55 R
1871 1910 0.249573 GAGCAGAGGAGAGATGCAGC 60.250 60.000 0.0 0.0 42.45 5.25 R
2553 2642 1.067425 CATGCAGTTCATGGGGTTGTG 60.067 52.381 0.0 0.0 46.81 3.33 R
2695 2797 1.202710 TGGTTGTGCTACACCACGAAT 60.203 47.619 0.0 0.0 38.55 3.34 R
2722 2824 3.618690 GGAACTGCTCCAACTAGTGAT 57.381 47.619 0.0 0.0 44.67 3.06 R
3142 3250 5.007234 TCACTTTGTGTCACCTATTTGAACG 59.993 40.000 0.0 0.0 34.79 3.95 R
4445 5750 0.251165 GCCAAGCCCAAACTAGGACA 60.251 55.000 0.0 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.929941 AAGAAGATCCTAAAGGCTTTACTTG 57.070 36.000 19.35 10.29 34.44 3.16
25 26 6.418946 AGAAGATCCTAAAGGCTTTACTTGG 58.581 40.000 19.35 17.02 34.44 3.61
26 27 4.527944 AGATCCTAAAGGCTTTACTTGGC 58.472 43.478 15.49 4.85 34.44 4.52
27 28 3.799432 TCCTAAAGGCTTTACTTGGCA 57.201 42.857 15.49 4.32 34.44 4.92
28 29 3.418047 TCCTAAAGGCTTTACTTGGCAC 58.582 45.455 15.49 0.00 34.44 5.01
29 30 3.153919 CCTAAAGGCTTTACTTGGCACA 58.846 45.455 15.49 0.00 0.00 4.57
30 31 4.690261 TCCTAAAGGCTTTACTTGGCACAA 60.690 41.667 15.49 0.00 38.39 3.33
31 32 6.158227 TCCTAAAGGCTTTACTTGGCACAAA 61.158 40.000 15.49 0.00 38.39 2.83
32 33 8.129426 TCCTAAAGGCTTTACTTGGCACAAAC 62.129 42.308 15.49 0.00 38.39 2.93
49 50 9.817809 TGGCACAAACACTAATTAAAACATAAA 57.182 25.926 0.00 0.00 31.92 1.40
74 75 9.802039 AAAAACACAATAATAACAGAGGGTAGA 57.198 29.630 0.00 0.00 0.00 2.59
75 76 9.975218 AAAACACAATAATAACAGAGGGTAGAT 57.025 29.630 0.00 0.00 0.00 1.98
111 112 8.696410 TTACTAAACAGGAACAAAAAGCAAAG 57.304 30.769 0.00 0.00 0.00 2.77
112 113 6.930731 ACTAAACAGGAACAAAAAGCAAAGA 58.069 32.000 0.00 0.00 0.00 2.52
113 114 7.382898 ACTAAACAGGAACAAAAAGCAAAGAA 58.617 30.769 0.00 0.00 0.00 2.52
114 115 6.480524 AAACAGGAACAAAAAGCAAAGAAC 57.519 33.333 0.00 0.00 0.00 3.01
115 116 5.146010 ACAGGAACAAAAAGCAAAGAACA 57.854 34.783 0.00 0.00 0.00 3.18
116 117 5.546526 ACAGGAACAAAAAGCAAAGAACAA 58.453 33.333 0.00 0.00 0.00 2.83
117 118 5.994668 ACAGGAACAAAAAGCAAAGAACAAA 59.005 32.000 0.00 0.00 0.00 2.83
118 119 6.484977 ACAGGAACAAAAAGCAAAGAACAAAA 59.515 30.769 0.00 0.00 0.00 2.44
119 120 7.012799 ACAGGAACAAAAAGCAAAGAACAAAAA 59.987 29.630 0.00 0.00 0.00 1.94
120 121 8.022550 CAGGAACAAAAAGCAAAGAACAAAAAT 58.977 29.630 0.00 0.00 0.00 1.82
121 122 9.225436 AGGAACAAAAAGCAAAGAACAAAAATA 57.775 25.926 0.00 0.00 0.00 1.40
122 123 9.833182 GGAACAAAAAGCAAAGAACAAAAATAA 57.167 25.926 0.00 0.00 0.00 1.40
129 130 9.800433 AAAGCAAAGAACAAAAATAAAATTGGG 57.200 25.926 0.00 0.00 0.00 4.12
130 131 8.518430 AGCAAAGAACAAAAATAAAATTGGGT 57.482 26.923 0.00 0.00 0.00 4.51
131 132 8.965819 AGCAAAGAACAAAAATAAAATTGGGTT 58.034 25.926 0.00 0.00 0.00 4.11
132 133 9.018716 GCAAAGAACAAAAATAAAATTGGGTTG 57.981 29.630 0.00 0.00 0.00 3.77
133 134 9.018716 CAAAGAACAAAAATAAAATTGGGTTGC 57.981 29.630 0.00 0.00 0.00 4.17
134 135 7.270757 AGAACAAAAATAAAATTGGGTTGCC 57.729 32.000 0.00 0.00 0.00 4.52
135 136 7.059788 AGAACAAAAATAAAATTGGGTTGCCT 58.940 30.769 0.00 0.00 0.00 4.75
136 137 6.875948 ACAAAAATAAAATTGGGTTGCCTC 57.124 33.333 0.00 0.00 0.00 4.70
137 138 5.767665 ACAAAAATAAAATTGGGTTGCCTCC 59.232 36.000 0.00 0.00 0.00 4.30
147 148 3.294493 TTGCCTCCCAACAAGCGC 61.294 61.111 0.00 0.00 0.00 5.92
148 149 3.790416 TTGCCTCCCAACAAGCGCT 62.790 57.895 2.64 2.64 0.00 5.92
149 150 2.046314 GCCTCCCAACAAGCGCTA 60.046 61.111 12.05 0.00 0.00 4.26
150 151 1.452108 GCCTCCCAACAAGCGCTAT 60.452 57.895 12.05 0.00 0.00 2.97
151 152 1.440145 GCCTCCCAACAAGCGCTATC 61.440 60.000 12.05 0.00 0.00 2.08
152 153 1.154205 CCTCCCAACAAGCGCTATCG 61.154 60.000 12.05 4.88 39.07 2.92
153 154 0.460284 CTCCCAACAAGCGCTATCGT 60.460 55.000 12.05 5.66 38.14 3.73
154 155 0.036765 TCCCAACAAGCGCTATCGTT 60.037 50.000 12.05 12.35 38.14 3.85
155 156 0.802494 CCCAACAAGCGCTATCGTTT 59.198 50.000 12.05 0.00 39.71 3.60
156 157 2.004017 CCCAACAAGCGCTATCGTTTA 58.996 47.619 12.05 0.00 37.02 2.01
157 158 2.417239 CCCAACAAGCGCTATCGTTTAA 59.583 45.455 12.05 0.00 37.02 1.52
158 159 3.413558 CCAACAAGCGCTATCGTTTAAC 58.586 45.455 12.05 0.00 37.02 2.01
159 160 3.081445 CAACAAGCGCTATCGTTTAACG 58.919 45.455 12.05 11.60 44.19 3.18
161 162 4.866301 GCGCTATCGTTTAACGCC 57.134 55.556 13.06 0.51 43.58 5.68
162 163 1.274770 GCGCTATCGTTTAACGCCC 59.725 57.895 13.06 0.17 43.58 6.13
163 164 1.929376 CGCTATCGTTTAACGCCCC 59.071 57.895 13.06 0.51 42.21 5.80
164 165 0.529119 CGCTATCGTTTAACGCCCCT 60.529 55.000 13.06 0.31 42.21 4.79
165 166 0.935196 GCTATCGTTTAACGCCCCTG 59.065 55.000 13.06 2.59 42.21 4.45
166 167 1.578583 CTATCGTTTAACGCCCCTGG 58.421 55.000 13.06 0.00 42.21 4.45
167 168 0.462403 TATCGTTTAACGCCCCTGGC 60.462 55.000 13.06 0.00 46.75 4.85
179 180 2.452600 CCCCTGGCTAGGCATAAAAA 57.547 50.000 20.56 0.00 43.16 1.94
180 181 2.031870 CCCCTGGCTAGGCATAAAAAC 58.968 52.381 20.56 0.00 43.16 2.43
181 182 2.622977 CCCCTGGCTAGGCATAAAAACA 60.623 50.000 20.56 0.00 43.16 2.83
182 183 3.096092 CCCTGGCTAGGCATAAAAACAA 58.904 45.455 20.56 0.00 43.16 2.83
183 184 3.131046 CCCTGGCTAGGCATAAAAACAAG 59.869 47.826 20.56 4.44 43.16 3.16
184 185 4.016444 CCTGGCTAGGCATAAAAACAAGA 58.984 43.478 20.56 0.00 37.25 3.02
185 186 4.462483 CCTGGCTAGGCATAAAAACAAGAA 59.538 41.667 20.56 0.00 37.25 2.52
186 187 5.127682 CCTGGCTAGGCATAAAAACAAGAAT 59.872 40.000 20.56 0.00 37.25 2.40
187 188 6.321181 CCTGGCTAGGCATAAAAACAAGAATA 59.679 38.462 20.56 0.00 37.25 1.75
188 189 7.333528 TGGCTAGGCATAAAAACAAGAATAG 57.666 36.000 16.16 0.00 0.00 1.73
189 190 7.116075 TGGCTAGGCATAAAAACAAGAATAGA 58.884 34.615 16.16 0.00 0.00 1.98
190 191 7.779798 TGGCTAGGCATAAAAACAAGAATAGAT 59.220 33.333 16.16 0.00 0.00 1.98
191 192 8.293157 GGCTAGGCATAAAAACAAGAATAGATC 58.707 37.037 12.16 0.00 0.00 2.75
192 193 9.061435 GCTAGGCATAAAAACAAGAATAGATCT 57.939 33.333 0.00 0.00 41.32 2.75
195 196 9.566432 AGGCATAAAAACAAGAATAGATCTAGG 57.434 33.333 8.70 0.00 37.42 3.02
196 197 9.343539 GGCATAAAAACAAGAATAGATCTAGGT 57.656 33.333 8.70 0.00 37.42 3.08
211 212 7.682787 AGATCTAGGTATTGTCATCTTTGGT 57.317 36.000 0.00 0.00 0.00 3.67
212 213 8.783660 AGATCTAGGTATTGTCATCTTTGGTA 57.216 34.615 0.00 0.00 0.00 3.25
213 214 9.386122 AGATCTAGGTATTGTCATCTTTGGTAT 57.614 33.333 0.00 0.00 0.00 2.73
214 215 9.429359 GATCTAGGTATTGTCATCTTTGGTATG 57.571 37.037 0.00 0.00 0.00 2.39
215 216 7.217200 TCTAGGTATTGTCATCTTTGGTATGC 58.783 38.462 0.00 0.00 0.00 3.14
216 217 5.754782 AGGTATTGTCATCTTTGGTATGCA 58.245 37.500 0.00 0.00 0.00 3.96
217 218 6.186957 AGGTATTGTCATCTTTGGTATGCAA 58.813 36.000 0.00 0.00 0.00 4.08
218 219 6.835488 AGGTATTGTCATCTTTGGTATGCAAT 59.165 34.615 0.00 0.00 36.26 3.56
219 220 7.013655 AGGTATTGTCATCTTTGGTATGCAATC 59.986 37.037 0.00 0.00 35.13 2.67
220 221 5.581126 TTGTCATCTTTGGTATGCAATCC 57.419 39.130 0.00 0.00 0.00 3.01
221 222 4.598022 TGTCATCTTTGGTATGCAATCCA 58.402 39.130 8.81 8.81 0.00 3.41
222 223 5.202765 TGTCATCTTTGGTATGCAATCCAT 58.797 37.500 12.81 0.00 37.97 3.41
223 224 6.363882 TGTCATCTTTGGTATGCAATCCATA 58.636 36.000 12.81 8.30 35.34 2.74
224 225 6.832900 TGTCATCTTTGGTATGCAATCCATAA 59.167 34.615 12.81 9.59 38.11 1.90
225 226 7.013559 TGTCATCTTTGGTATGCAATCCATAAG 59.986 37.037 12.81 16.04 38.11 1.73
226 227 7.013655 GTCATCTTTGGTATGCAATCCATAAGT 59.986 37.037 12.81 8.28 38.11 2.24
227 228 6.698008 TCTTTGGTATGCAATCCATAAGTG 57.302 37.500 12.81 4.24 38.11 3.16
229 230 3.221771 TGGTATGCAATCCATAAGTGGC 58.778 45.455 8.81 0.00 45.63 5.01
230 231 3.117550 TGGTATGCAATCCATAAGTGGCT 60.118 43.478 8.81 0.00 45.63 4.75
231 232 3.503748 GGTATGCAATCCATAAGTGGCTC 59.496 47.826 0.00 0.00 45.63 4.70
232 233 3.589951 ATGCAATCCATAAGTGGCTCT 57.410 42.857 0.00 0.00 45.63 4.09
233 234 2.923121 TGCAATCCATAAGTGGCTCTC 58.077 47.619 0.00 0.00 45.63 3.20
234 235 2.239402 TGCAATCCATAAGTGGCTCTCA 59.761 45.455 0.00 0.00 45.63 3.27
235 236 3.117776 TGCAATCCATAAGTGGCTCTCAT 60.118 43.478 0.00 0.00 45.63 2.90
236 237 4.102996 TGCAATCCATAAGTGGCTCTCATA 59.897 41.667 0.00 0.00 45.63 2.15
237 238 5.065914 GCAATCCATAAGTGGCTCTCATAA 58.934 41.667 0.00 0.00 45.63 1.90
238 239 5.709164 GCAATCCATAAGTGGCTCTCATAAT 59.291 40.000 0.00 0.00 45.63 1.28
239 240 6.881065 GCAATCCATAAGTGGCTCTCATAATA 59.119 38.462 0.00 0.00 45.63 0.98
240 241 7.065563 GCAATCCATAAGTGGCTCTCATAATAG 59.934 40.741 0.00 0.00 45.63 1.73
241 242 8.316946 CAATCCATAAGTGGCTCTCATAATAGA 58.683 37.037 0.00 0.00 45.63 1.98
242 243 8.621126 ATCCATAAGTGGCTCTCATAATAGAT 57.379 34.615 0.00 0.00 45.63 1.98
243 244 8.441311 TCCATAAGTGGCTCTCATAATAGATT 57.559 34.615 0.00 0.00 45.63 2.40
244 245 8.535335 TCCATAAGTGGCTCTCATAATAGATTC 58.465 37.037 0.00 0.00 45.63 2.52
245 246 8.316946 CCATAAGTGGCTCTCATAATAGATTCA 58.683 37.037 0.00 0.00 39.01 2.57
246 247 9.887629 CATAAGTGGCTCTCATAATAGATTCAT 57.112 33.333 0.00 0.00 0.00 2.57
249 250 9.941325 AAGTGGCTCTCATAATAGATTCATAAG 57.059 33.333 0.00 0.00 0.00 1.73
250 251 8.538701 AGTGGCTCTCATAATAGATTCATAAGG 58.461 37.037 0.00 0.00 0.00 2.69
251 252 7.279758 GTGGCTCTCATAATAGATTCATAAGGC 59.720 40.741 0.00 0.00 0.00 4.35
252 253 7.038088 TGGCTCTCATAATAGATTCATAAGGCA 60.038 37.037 0.00 0.00 0.00 4.75
253 254 7.826252 GGCTCTCATAATAGATTCATAAGGCAA 59.174 37.037 0.00 0.00 0.00 4.52
254 255 9.393512 GCTCTCATAATAGATTCATAAGGCAAT 57.606 33.333 0.00 0.00 0.00 3.56
282 283 7.979444 ATTTTCTTCATAGGAAAGTGTTCGA 57.021 32.000 0.00 0.00 32.42 3.71
283 284 7.979444 TTTTCTTCATAGGAAAGTGTTCGAT 57.021 32.000 0.00 0.00 34.73 3.59
284 285 6.968131 TTCTTCATAGGAAAGTGTTCGATG 57.032 37.500 0.00 0.00 34.28 3.84
285 286 4.870426 TCTTCATAGGAAAGTGTTCGATGC 59.130 41.667 0.00 0.00 34.28 3.91
286 287 3.531538 TCATAGGAAAGTGTTCGATGCC 58.468 45.455 0.00 0.00 34.28 4.40
287 288 3.197766 TCATAGGAAAGTGTTCGATGCCT 59.802 43.478 0.00 0.00 34.28 4.75
288 289 2.568623 AGGAAAGTGTTCGATGCCTT 57.431 45.000 0.00 0.00 34.28 4.35
289 290 2.863809 AGGAAAGTGTTCGATGCCTTT 58.136 42.857 4.08 4.08 34.28 3.11
290 291 2.814336 AGGAAAGTGTTCGATGCCTTTC 59.186 45.455 16.69 16.69 41.16 2.62
291 292 2.814336 GGAAAGTGTTCGATGCCTTTCT 59.186 45.455 20.88 0.00 41.46 2.52
292 293 3.253432 GGAAAGTGTTCGATGCCTTTCTT 59.747 43.478 20.88 5.12 41.46 2.52
293 294 4.261614 GGAAAGTGTTCGATGCCTTTCTTT 60.262 41.667 20.88 11.03 41.46 2.52
294 295 5.048991 GGAAAGTGTTCGATGCCTTTCTTTA 60.049 40.000 20.88 0.00 41.46 1.85
295 296 6.385649 AAAGTGTTCGATGCCTTTCTTTAA 57.614 33.333 0.00 0.00 0.00 1.52
296 297 5.358298 AGTGTTCGATGCCTTTCTTTAAC 57.642 39.130 0.00 0.00 0.00 2.01
297 298 4.084013 AGTGTTCGATGCCTTTCTTTAACG 60.084 41.667 0.00 0.00 0.00 3.18
298 299 3.187637 TGTTCGATGCCTTTCTTTAACGG 59.812 43.478 0.00 0.00 0.00 4.44
299 300 3.322211 TCGATGCCTTTCTTTAACGGA 57.678 42.857 0.00 0.00 0.00 4.69
300 301 3.666274 TCGATGCCTTTCTTTAACGGAA 58.334 40.909 0.00 0.00 0.00 4.30
301 302 4.066490 TCGATGCCTTTCTTTAACGGAAA 58.934 39.130 0.00 3.70 0.00 3.13
302 303 4.698304 TCGATGCCTTTCTTTAACGGAAAT 59.302 37.500 4.06 0.00 33.12 2.17
303 304 5.182380 TCGATGCCTTTCTTTAACGGAAATT 59.818 36.000 4.06 0.00 33.12 1.82
304 305 5.286082 CGATGCCTTTCTTTAACGGAAATTG 59.714 40.000 4.06 1.71 33.12 2.32
305 306 4.877282 TGCCTTTCTTTAACGGAAATTGG 58.123 39.130 4.06 4.60 33.12 3.16
306 307 4.585162 TGCCTTTCTTTAACGGAAATTGGA 59.415 37.500 10.17 3.31 33.12 3.53
307 308 5.069251 TGCCTTTCTTTAACGGAAATTGGAA 59.931 36.000 10.17 1.52 33.12 3.53
308 309 6.163476 GCCTTTCTTTAACGGAAATTGGAAT 58.837 36.000 10.17 0.00 33.12 3.01
309 310 6.310467 GCCTTTCTTTAACGGAAATTGGAATC 59.690 38.462 10.17 0.00 33.12 2.52
310 311 7.602753 CCTTTCTTTAACGGAAATTGGAATCT 58.397 34.615 4.06 0.00 33.12 2.40
311 312 8.736244 CCTTTCTTTAACGGAAATTGGAATCTA 58.264 33.333 4.06 0.00 33.12 1.98
320 321 8.996651 ACGGAAATTGGAATCTAATATTTCCT 57.003 30.769 16.84 6.70 46.12 3.36
321 322 9.421399 ACGGAAATTGGAATCTAATATTTCCTT 57.579 29.630 16.84 9.09 46.12 3.36
322 323 9.899226 CGGAAATTGGAATCTAATATTTCCTTC 57.101 33.333 16.84 6.72 46.12 3.46
340 341 8.761575 TTTCCTTCTTTCATGTCAATAATTGC 57.238 30.769 0.00 0.00 0.00 3.56
341 342 7.465353 TCCTTCTTTCATGTCAATAATTGCA 57.535 32.000 0.00 0.00 0.00 4.08
342 343 7.315142 TCCTTCTTTCATGTCAATAATTGCAC 58.685 34.615 0.00 0.00 0.00 4.57
343 344 6.532657 CCTTCTTTCATGTCAATAATTGCACC 59.467 38.462 0.00 0.00 0.00 5.01
344 345 6.587206 TCTTTCATGTCAATAATTGCACCA 57.413 33.333 0.00 0.00 0.00 4.17
345 346 6.990798 TCTTTCATGTCAATAATTGCACCAA 58.009 32.000 0.00 0.00 0.00 3.67
346 347 7.613585 TCTTTCATGTCAATAATTGCACCAAT 58.386 30.769 0.00 0.00 35.39 3.16
347 348 7.760794 TCTTTCATGTCAATAATTGCACCAATC 59.239 33.333 0.00 0.00 32.43 2.67
348 349 5.580661 TCATGTCAATAATTGCACCAATCG 58.419 37.500 0.00 0.00 32.43 3.34
349 350 5.125257 TCATGTCAATAATTGCACCAATCGT 59.875 36.000 0.00 0.00 32.43 3.73
350 351 5.384063 TGTCAATAATTGCACCAATCGTT 57.616 34.783 0.00 0.00 32.43 3.85
351 352 5.398169 TGTCAATAATTGCACCAATCGTTC 58.602 37.500 0.00 0.00 32.43 3.95
352 353 5.182950 TGTCAATAATTGCACCAATCGTTCT 59.817 36.000 0.00 0.00 32.43 3.01
353 354 6.372937 TGTCAATAATTGCACCAATCGTTCTA 59.627 34.615 0.00 0.00 32.43 2.10
354 355 7.094592 TGTCAATAATTGCACCAATCGTTCTAA 60.095 33.333 0.00 0.00 32.43 2.10
355 356 7.429340 GTCAATAATTGCACCAATCGTTCTAAG 59.571 37.037 0.00 0.00 32.43 2.18
356 357 4.701956 AATTGCACCAATCGTTCTAAGG 57.298 40.909 0.00 0.00 32.43 2.69
357 358 3.410631 TTGCACCAATCGTTCTAAGGA 57.589 42.857 0.00 0.00 0.00 3.36
358 359 3.410631 TGCACCAATCGTTCTAAGGAA 57.589 42.857 0.00 0.00 0.00 3.36
359 360 3.745799 TGCACCAATCGTTCTAAGGAAA 58.254 40.909 0.00 0.00 32.81 3.13
360 361 3.751175 TGCACCAATCGTTCTAAGGAAAG 59.249 43.478 0.00 0.00 32.81 2.62
361 362 4.000988 GCACCAATCGTTCTAAGGAAAGA 58.999 43.478 0.00 0.00 42.24 2.52
362 363 4.636206 GCACCAATCGTTCTAAGGAAAGAT 59.364 41.667 0.00 0.00 46.84 2.40
363 364 5.220681 GCACCAATCGTTCTAAGGAAAGATC 60.221 44.000 7.40 0.00 45.15 2.75
364 365 6.109359 CACCAATCGTTCTAAGGAAAGATCT 58.891 40.000 7.40 0.00 45.15 2.75
365 366 7.265673 CACCAATCGTTCTAAGGAAAGATCTA 58.734 38.462 0.00 0.00 45.15 1.98
366 367 7.222999 CACCAATCGTTCTAAGGAAAGATCTAC 59.777 40.741 0.00 0.00 45.15 2.59
367 368 6.702282 CCAATCGTTCTAAGGAAAGATCTACC 59.298 42.308 9.94 9.94 45.15 3.18
368 369 7.265673 CAATCGTTCTAAGGAAAGATCTACCA 58.734 38.462 17.44 1.72 45.15 3.25
369 370 6.845758 TCGTTCTAAGGAAAGATCTACCAA 57.154 37.500 17.44 7.38 35.63 3.67
370 371 6.864342 TCGTTCTAAGGAAAGATCTACCAAG 58.136 40.000 17.44 14.21 35.63 3.61
371 372 6.662234 TCGTTCTAAGGAAAGATCTACCAAGA 59.338 38.462 17.44 15.69 35.63 3.02
407 408 4.532521 ACTAATGGAGCAGTTGGTAGTCTT 59.467 41.667 0.00 0.00 0.00 3.01
538 552 0.391263 ATTTTCGCGTCACCCTCTCC 60.391 55.000 5.77 0.00 0.00 3.71
675 689 8.616076 CCTTACCTTAAATCACTCAATCACATC 58.384 37.037 0.00 0.00 0.00 3.06
822 837 9.614792 AAACTCCCTTTCTTATGACATGTATAC 57.385 33.333 0.00 0.00 0.00 1.47
864 879 3.026630 TGTCGAGCGTTCTTGATTCTT 57.973 42.857 0.00 0.00 35.31 2.52
901 916 4.039357 CGTCACTGGGTCGCGACT 62.039 66.667 35.50 15.99 0.00 4.18
902 917 2.683859 CGTCACTGGGTCGCGACTA 61.684 63.158 35.50 24.07 0.00 2.59
1000 1015 2.983879 GCTTCCCTAGCCTTGGCCA 61.984 63.158 0.00 0.00 44.48 5.36
1050 1065 2.032681 GCGGCACTTGAAGGACCT 59.967 61.111 0.00 0.00 0.00 3.85
1087 1102 1.735360 GCAGGCACACTTTGAAGCA 59.265 52.632 0.00 0.00 0.00 3.91
1090 1105 0.825010 AGGCACACTTTGAAGCAGGG 60.825 55.000 0.00 0.00 0.00 4.45
1179 1194 6.868339 GGATTTTGGATGACAGTTTCGAAAAT 59.132 34.615 13.10 8.92 40.59 1.82
1254 1280 5.374071 CGTCCCCATATAAAAAGCTAACCT 58.626 41.667 0.00 0.00 0.00 3.50
1291 1318 1.010793 TCTCCTCTCTCTCCCTCCTCT 59.989 57.143 0.00 0.00 0.00 3.69
1305 1332 2.528818 CCTCTGCAACCCCCTGTCA 61.529 63.158 0.00 0.00 0.00 3.58
1356 1383 1.997874 GCCTCCTCCCACACCTCAT 60.998 63.158 0.00 0.00 0.00 2.90
1483 1521 1.733041 CAACTCGCGTCGTGACCAT 60.733 57.895 5.77 0.00 0.00 3.55
1607 1645 2.409651 GCTCGCCTACGACTCCTG 59.590 66.667 0.00 0.00 45.12 3.86
1630 1668 1.562672 ATGGCTAGGGTTTCGGCTGT 61.563 55.000 0.00 0.00 0.00 4.40
1782 1821 2.681778 CCAGACCTCCTCTGCCGT 60.682 66.667 0.00 0.00 44.80 5.68
1876 1915 1.079819 GAGCACTTCTACCGCTGCA 60.080 57.895 0.00 0.00 35.75 4.41
1879 1918 0.460987 GCACTTCTACCGCTGCATCT 60.461 55.000 0.00 0.00 0.00 2.90
1890 1929 0.249573 GCTGCATCTCTCCTCTGCTC 60.250 60.000 0.00 0.00 36.84 4.26
1891 1930 0.390124 CTGCATCTCTCCTCTGCTCC 59.610 60.000 0.00 0.00 36.84 4.70
1892 1931 1.363443 GCATCTCTCCTCTGCTCCG 59.637 63.158 0.00 0.00 33.15 4.63
1893 1932 1.106351 GCATCTCTCCTCTGCTCCGA 61.106 60.000 0.00 0.00 33.15 4.55
1894 1933 0.953727 CATCTCTCCTCTGCTCCGAG 59.046 60.000 0.00 0.00 0.00 4.63
1895 1934 0.823356 ATCTCTCCTCTGCTCCGAGC 60.823 60.000 13.81 13.81 42.82 5.03
1930 1981 2.885135 ACTCTGTTTCATGGCCATCA 57.115 45.000 17.61 10.13 0.00 3.07
1994 2045 9.161629 TGTTTGAGCTTGATTAAATAGATTCGA 57.838 29.630 0.00 0.00 0.00 3.71
2012 2063 1.608590 CGATGTTGTTTGGGCTTGAGT 59.391 47.619 0.00 0.00 0.00 3.41
2013 2064 2.605338 CGATGTTGTTTGGGCTTGAGTG 60.605 50.000 0.00 0.00 0.00 3.51
2255 2310 6.813293 TCCTGAATCTCATGGTAAATCTGA 57.187 37.500 0.00 0.00 0.00 3.27
2288 2343 8.953313 CATTGCATATATGTGTCATCACCTATT 58.047 33.333 14.14 0.00 43.26 1.73
2506 2561 1.534595 CTCTTTGTGCAAGTGAGCTCC 59.465 52.381 12.15 2.40 33.66 4.70
2553 2642 0.968405 TGGATTTTGCCTGCAACTCC 59.032 50.000 18.89 18.89 37.96 3.85
2588 2689 6.152492 TGAACTGCATGCATTAACCTAATTCA 59.848 34.615 22.97 15.20 0.00 2.57
2695 2797 7.004555 TCACTCATTCTTGCTTCTAAACCTA 57.995 36.000 0.00 0.00 0.00 3.08
2720 2822 2.164624 GTGGTGTAGCACAACCAACAAA 59.835 45.455 9.15 0.00 34.14 2.83
2721 2823 3.027412 TGGTGTAGCACAACCAACAAAT 58.973 40.909 2.23 0.00 34.14 2.32
2722 2824 4.036971 GTGGTGTAGCACAACCAACAAATA 59.963 41.667 9.15 0.00 34.14 1.40
2723 2825 4.830046 TGGTGTAGCACAACCAACAAATAT 59.170 37.500 2.23 0.00 34.14 1.28
2833 2935 9.940166 AGAAATTTCATTTTTCTTTTCATGTGC 57.060 25.926 19.99 0.00 39.74 4.57
3007 3109 2.862541 TGCAAGAAGCCAAGAAGCTAA 58.137 42.857 0.00 0.00 44.11 3.09
3039 3141 7.951530 CATTTTATGCAAAGACTGGAGTTTT 57.048 32.000 0.00 0.00 0.00 2.43
3077 3179 8.783660 TTACTTCCTAACATGGATGAGAGTAT 57.216 34.615 0.00 0.00 35.83 2.12
3142 3250 4.214971 TCTTTGTCTGATTGCTTCTGCTTC 59.785 41.667 0.00 0.00 40.48 3.86
3337 3460 6.817765 TTACAACAGAGGTGATGGATTTTC 57.182 37.500 0.00 0.00 30.80 2.29
3858 5042 6.525629 ACTACATTGTATTGTATGGGAGCTC 58.474 40.000 4.71 4.71 31.94 4.09
3911 5095 5.938322 TGTTTTCGATTCTATGCAGGTTTC 58.062 37.500 0.00 0.00 0.00 2.78
4038 5241 5.954150 AGCTACCAGTGGATTTTCAATGAAT 59.046 36.000 18.40 0.00 35.04 2.57
4044 5247 7.038870 ACCAGTGGATTTTCAATGAATTCATGA 60.039 33.333 21.39 16.62 36.56 3.07
4055 5258 8.357796 TCAATGAATTCATGATACTCGACTTC 57.642 34.615 21.39 0.00 36.56 3.01
4063 5266 9.653287 ATTCATGATACTCGACTTCTTACAAAA 57.347 29.630 0.00 0.00 0.00 2.44
4132 5347 3.134442 TCAGGTTTGCTTTTTGAAGCCAT 59.866 39.130 8.49 0.00 44.89 4.40
4158 5373 7.989826 ACTAGATTGTTGGAAATCTGTATTGC 58.010 34.615 9.20 0.00 44.68 3.56
4180 5399 6.054295 TGCCTTGTGAACAAATGCTATTTTT 58.946 32.000 14.68 0.00 35.77 1.94
4181 5400 6.018098 TGCCTTGTGAACAAATGCTATTTTTG 60.018 34.615 14.68 0.00 39.43 2.44
4257 5476 5.163602 TGGTGGTCTTGTTGTAAATTGTGAC 60.164 40.000 0.00 0.00 0.00 3.67
4262 5481 5.685511 GTCTTGTTGTAAATTGTGACGCATT 59.314 36.000 0.00 0.00 0.00 3.56
4274 5493 2.290641 GTGACGCATTGAGAAAACAGGT 59.709 45.455 0.00 0.00 0.00 4.00
4286 5505 7.654022 TGAGAAAACAGGTTGGACTAAAAAT 57.346 32.000 0.00 0.00 0.00 1.82
4333 5638 0.896923 TGGGCTCGTTAATACACGGT 59.103 50.000 0.00 0.00 40.74 4.83
4349 5654 2.110213 GTCGTGTTGGCCTCCACA 59.890 61.111 20.53 11.40 30.78 4.17
4387 5692 3.628008 TCCACATCAGATACACGTAGGT 58.372 45.455 0.00 0.00 0.00 3.08
4410 5715 2.238144 CCATGTCAGGTCATGTCCTTCT 59.762 50.000 8.95 0.00 42.29 2.85
4416 5721 2.028130 AGGTCATGTCCTTCTAGCTCG 58.972 52.381 5.59 0.00 33.52 5.03
4528 5833 9.913310 TGGAAGGTACAATATCAAATTATGACA 57.087 29.630 0.00 0.00 41.93 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.066634 GCCAAGTAAAGCCTTTAGGATCTTC 59.933 44.000 0.00 0.00 37.39 2.87
5 6 4.096532 GTGCCAAGTAAAGCCTTTAGGATC 59.903 45.833 0.00 0.00 37.39 3.36
6 7 4.017126 GTGCCAAGTAAAGCCTTTAGGAT 58.983 43.478 0.00 0.00 37.39 3.24
7 8 3.181438 TGTGCCAAGTAAAGCCTTTAGGA 60.181 43.478 0.00 0.00 37.39 2.94
8 9 3.153919 TGTGCCAAGTAAAGCCTTTAGG 58.846 45.455 0.00 0.00 38.53 2.69
9 10 4.846779 TTGTGCCAAGTAAAGCCTTTAG 57.153 40.909 0.00 0.00 0.00 1.85
10 11 4.402793 TGTTTGTGCCAAGTAAAGCCTTTA 59.597 37.500 0.00 0.00 0.00 1.85
11 12 3.196685 TGTTTGTGCCAAGTAAAGCCTTT 59.803 39.130 0.00 0.00 0.00 3.11
12 13 2.763448 TGTTTGTGCCAAGTAAAGCCTT 59.237 40.909 0.00 0.00 0.00 4.35
13 14 2.100749 GTGTTTGTGCCAAGTAAAGCCT 59.899 45.455 0.00 0.00 0.00 4.58
14 15 2.100749 AGTGTTTGTGCCAAGTAAAGCC 59.899 45.455 0.00 0.00 0.00 4.35
15 16 3.436700 AGTGTTTGTGCCAAGTAAAGC 57.563 42.857 0.00 0.00 0.00 3.51
16 17 9.522804 TTTAATTAGTGTTTGTGCCAAGTAAAG 57.477 29.630 0.00 0.00 0.00 1.85
17 18 9.871238 TTTTAATTAGTGTTTGTGCCAAGTAAA 57.129 25.926 0.00 0.00 0.00 2.01
18 19 9.303537 GTTTTAATTAGTGTTTGTGCCAAGTAA 57.696 29.630 0.00 0.00 0.00 2.24
19 20 8.467598 TGTTTTAATTAGTGTTTGTGCCAAGTA 58.532 29.630 0.00 0.00 0.00 2.24
20 21 7.324178 TGTTTTAATTAGTGTTTGTGCCAAGT 58.676 30.769 0.00 0.00 0.00 3.16
21 22 7.763172 TGTTTTAATTAGTGTTTGTGCCAAG 57.237 32.000 0.00 0.00 0.00 3.61
22 23 9.817809 TTATGTTTTAATTAGTGTTTGTGCCAA 57.182 25.926 0.00 0.00 0.00 4.52
23 24 9.817809 TTTATGTTTTAATTAGTGTTTGTGCCA 57.182 25.926 0.00 0.00 0.00 4.92
48 49 9.802039 TCTACCCTCTGTTATTATTGTGTTTTT 57.198 29.630 0.00 0.00 0.00 1.94
49 50 9.975218 ATCTACCCTCTGTTATTATTGTGTTTT 57.025 29.630 0.00 0.00 0.00 2.43
85 86 9.313118 CTTTGCTTTTTGTTCCTGTTTAGTAAT 57.687 29.630 0.00 0.00 0.00 1.89
86 87 8.524487 TCTTTGCTTTTTGTTCCTGTTTAGTAA 58.476 29.630 0.00 0.00 0.00 2.24
87 88 8.057536 TCTTTGCTTTTTGTTCCTGTTTAGTA 57.942 30.769 0.00 0.00 0.00 1.82
88 89 6.930731 TCTTTGCTTTTTGTTCCTGTTTAGT 58.069 32.000 0.00 0.00 0.00 2.24
89 90 7.330700 TGTTCTTTGCTTTTTGTTCCTGTTTAG 59.669 33.333 0.00 0.00 0.00 1.85
90 91 7.155328 TGTTCTTTGCTTTTTGTTCCTGTTTA 58.845 30.769 0.00 0.00 0.00 2.01
91 92 5.994668 TGTTCTTTGCTTTTTGTTCCTGTTT 59.005 32.000 0.00 0.00 0.00 2.83
92 93 5.546526 TGTTCTTTGCTTTTTGTTCCTGTT 58.453 33.333 0.00 0.00 0.00 3.16
93 94 5.146010 TGTTCTTTGCTTTTTGTTCCTGT 57.854 34.783 0.00 0.00 0.00 4.00
94 95 6.479095 TTTGTTCTTTGCTTTTTGTTCCTG 57.521 33.333 0.00 0.00 0.00 3.86
95 96 7.503521 TTTTTGTTCTTTGCTTTTTGTTCCT 57.496 28.000 0.00 0.00 0.00 3.36
96 97 9.833182 TTATTTTTGTTCTTTGCTTTTTGTTCC 57.167 25.926 0.00 0.00 0.00 3.62
103 104 9.800433 CCCAATTTTATTTTTGTTCTTTGCTTT 57.200 25.926 0.00 0.00 0.00 3.51
104 105 8.965819 ACCCAATTTTATTTTTGTTCTTTGCTT 58.034 25.926 0.00 0.00 0.00 3.91
105 106 8.518430 ACCCAATTTTATTTTTGTTCTTTGCT 57.482 26.923 0.00 0.00 0.00 3.91
106 107 9.018716 CAACCCAATTTTATTTTTGTTCTTTGC 57.981 29.630 0.00 0.00 0.00 3.68
107 108 9.018716 GCAACCCAATTTTATTTTTGTTCTTTG 57.981 29.630 0.00 0.00 0.00 2.77
108 109 8.194104 GGCAACCCAATTTTATTTTTGTTCTTT 58.806 29.630 0.00 0.00 0.00 2.52
109 110 7.559533 AGGCAACCCAATTTTATTTTTGTTCTT 59.440 29.630 0.00 0.00 37.17 2.52
110 111 7.059788 AGGCAACCCAATTTTATTTTTGTTCT 58.940 30.769 0.00 0.00 37.17 3.01
111 112 7.270757 AGGCAACCCAATTTTATTTTTGTTC 57.729 32.000 0.00 0.00 37.17 3.18
112 113 6.264292 GGAGGCAACCCAATTTTATTTTTGTT 59.736 34.615 0.00 0.00 37.17 2.83
113 114 5.767665 GGAGGCAACCCAATTTTATTTTTGT 59.232 36.000 0.00 0.00 37.17 2.83
114 115 6.252967 GGAGGCAACCCAATTTTATTTTTG 57.747 37.500 0.00 0.00 37.17 2.44
128 129 2.919494 CGCTTGTTGGGAGGCAACC 61.919 63.158 0.00 0.00 37.17 3.77
129 130 2.644992 CGCTTGTTGGGAGGCAAC 59.355 61.111 0.00 0.00 0.00 4.17
130 131 2.404566 TAGCGCTTGTTGGGAGGCAA 62.405 55.000 18.68 0.00 0.00 4.52
131 132 2.196997 ATAGCGCTTGTTGGGAGGCA 62.197 55.000 18.68 0.00 0.00 4.75
132 133 1.440145 GATAGCGCTTGTTGGGAGGC 61.440 60.000 18.68 0.00 0.00 4.70
133 134 1.154205 CGATAGCGCTTGTTGGGAGG 61.154 60.000 18.68 0.00 0.00 4.30
134 135 0.460284 ACGATAGCGCTTGTTGGGAG 60.460 55.000 18.68 1.34 42.48 4.30
135 136 0.036765 AACGATAGCGCTTGTTGGGA 60.037 50.000 18.68 0.00 42.48 4.37
136 137 0.802494 AAACGATAGCGCTTGTTGGG 59.198 50.000 18.68 1.82 42.48 4.12
137 138 3.413558 GTTAAACGATAGCGCTTGTTGG 58.586 45.455 18.68 5.13 42.48 3.77
138 139 3.081445 CGTTAAACGATAGCGCTTGTTG 58.919 45.455 18.68 11.82 46.05 3.33
139 140 2.473376 GCGTTAAACGATAGCGCTTGTT 60.473 45.455 18.68 15.85 46.05 2.83
140 141 1.060122 GCGTTAAACGATAGCGCTTGT 59.940 47.619 18.68 9.82 46.05 3.16
141 142 1.591394 GGCGTTAAACGATAGCGCTTG 60.591 52.381 18.68 9.06 46.05 4.01
142 143 0.648958 GGCGTTAAACGATAGCGCTT 59.351 50.000 18.68 2.89 46.05 4.68
143 144 1.149964 GGGCGTTAAACGATAGCGCT 61.150 55.000 17.26 17.26 46.05 5.92
144 145 1.274770 GGGCGTTAAACGATAGCGC 59.725 57.895 19.47 19.47 46.05 5.92
145 146 0.529119 AGGGGCGTTAAACGATAGCG 60.529 55.000 0.00 0.00 46.05 4.26
146 147 0.935196 CAGGGGCGTTAAACGATAGC 59.065 55.000 0.00 0.00 46.05 2.97
147 148 1.578583 CCAGGGGCGTTAAACGATAG 58.421 55.000 0.00 0.00 46.05 2.08
148 149 0.462403 GCCAGGGGCGTTAAACGATA 60.462 55.000 0.00 0.00 46.05 2.92
149 150 1.747745 GCCAGGGGCGTTAAACGAT 60.748 57.895 0.00 0.00 46.05 3.73
150 151 2.358984 GCCAGGGGCGTTAAACGA 60.359 61.111 0.00 0.00 46.05 3.85
160 161 2.031870 GTTTTTATGCCTAGCCAGGGG 58.968 52.381 0.00 0.00 42.88 4.79
161 162 2.733956 TGTTTTTATGCCTAGCCAGGG 58.266 47.619 0.00 0.00 42.88 4.45
162 163 4.016444 TCTTGTTTTTATGCCTAGCCAGG 58.984 43.478 0.00 0.00 45.77 4.45
163 164 5.643379 TTCTTGTTTTTATGCCTAGCCAG 57.357 39.130 0.00 0.00 0.00 4.85
164 165 7.116075 TCTATTCTTGTTTTTATGCCTAGCCA 58.884 34.615 0.00 0.00 0.00 4.75
165 166 7.568199 TCTATTCTTGTTTTTATGCCTAGCC 57.432 36.000 0.00 0.00 0.00 3.93
166 167 9.061435 AGATCTATTCTTGTTTTTATGCCTAGC 57.939 33.333 0.00 0.00 0.00 3.42
169 170 9.566432 CCTAGATCTATTCTTGTTTTTATGCCT 57.434 33.333 2.11 0.00 35.79 4.75
170 171 9.343539 ACCTAGATCTATTCTTGTTTTTATGCC 57.656 33.333 2.11 0.00 35.79 4.40
185 186 9.386122 ACCAAAGATGACAATACCTAGATCTAT 57.614 33.333 2.11 0.00 0.00 1.98
186 187 8.783660 ACCAAAGATGACAATACCTAGATCTA 57.216 34.615 1.69 1.69 0.00 1.98
187 188 7.682787 ACCAAAGATGACAATACCTAGATCT 57.317 36.000 0.00 0.00 0.00 2.75
188 189 9.429359 CATACCAAAGATGACAATACCTAGATC 57.571 37.037 0.00 0.00 0.00 2.75
189 190 7.880195 GCATACCAAAGATGACAATACCTAGAT 59.120 37.037 0.00 0.00 0.00 1.98
190 191 7.147567 TGCATACCAAAGATGACAATACCTAGA 60.148 37.037 0.00 0.00 0.00 2.43
191 192 6.992123 TGCATACCAAAGATGACAATACCTAG 59.008 38.462 0.00 0.00 0.00 3.02
192 193 6.894682 TGCATACCAAAGATGACAATACCTA 58.105 36.000 0.00 0.00 0.00 3.08
193 194 5.754782 TGCATACCAAAGATGACAATACCT 58.245 37.500 0.00 0.00 0.00 3.08
194 195 6.449635 TTGCATACCAAAGATGACAATACC 57.550 37.500 0.00 0.00 0.00 2.73
195 196 7.141363 GGATTGCATACCAAAGATGACAATAC 58.859 38.462 5.04 0.00 36.92 1.89
196 197 6.832900 TGGATTGCATACCAAAGATGACAATA 59.167 34.615 9.47 0.00 36.92 1.90
197 198 5.657745 TGGATTGCATACCAAAGATGACAAT 59.342 36.000 9.47 0.00 36.92 2.71
198 199 5.015515 TGGATTGCATACCAAAGATGACAA 58.984 37.500 9.47 0.00 36.92 3.18
199 200 4.598022 TGGATTGCATACCAAAGATGACA 58.402 39.130 9.47 0.00 36.92 3.58
200 201 5.779529 ATGGATTGCATACCAAAGATGAC 57.220 39.130 14.70 0.00 39.69 3.06
201 202 7.013559 CACTTATGGATTGCATACCAAAGATGA 59.986 37.037 23.59 7.71 39.69 2.92
202 203 7.143340 CACTTATGGATTGCATACCAAAGATG 58.857 38.462 23.59 18.12 39.69 2.90
203 204 7.281040 CACTTATGGATTGCATACCAAAGAT 57.719 36.000 23.59 11.72 39.69 2.40
204 205 6.698008 CACTTATGGATTGCATACCAAAGA 57.302 37.500 23.59 11.44 39.69 2.52
205 206 7.860931 AGCCACTTATGGATTGCATACCAAAG 61.861 42.308 14.70 17.79 44.30 2.77
206 207 6.102929 AGCCACTTATGGATTGCATACCAAA 61.103 40.000 14.70 10.10 44.30 3.28
207 208 4.630923 AGCCACTTATGGATTGCATACCAA 60.631 41.667 14.70 1.34 44.30 3.67
208 209 3.117550 AGCCACTTATGGATTGCATACCA 60.118 43.478 13.41 13.41 44.30 3.25
209 210 3.490348 AGCCACTTATGGATTGCATACC 58.510 45.455 0.00 0.00 44.30 2.73
220 221 9.887629 ATGAATCTATTATGAGAGCCACTTATG 57.112 33.333 0.00 0.00 0.00 1.90
223 224 9.941325 CTTATGAATCTATTATGAGAGCCACTT 57.059 33.333 0.00 0.00 0.00 3.16
224 225 8.538701 CCTTATGAATCTATTATGAGAGCCACT 58.461 37.037 0.00 0.00 0.00 4.00
225 226 7.279758 GCCTTATGAATCTATTATGAGAGCCAC 59.720 40.741 0.00 0.00 0.00 5.01
226 227 7.038088 TGCCTTATGAATCTATTATGAGAGCCA 60.038 37.037 0.00 0.00 0.00 4.75
227 228 7.334090 TGCCTTATGAATCTATTATGAGAGCC 58.666 38.462 0.00 0.00 0.00 4.70
228 229 8.783833 TTGCCTTATGAATCTATTATGAGAGC 57.216 34.615 0.00 0.00 0.00 4.09
256 257 9.496873 TCGAACACTTTCCTATGAAGAAAATTA 57.503 29.630 0.00 0.00 33.06 1.40
257 258 8.391075 TCGAACACTTTCCTATGAAGAAAATT 57.609 30.769 0.00 0.00 33.06 1.82
258 259 7.979444 TCGAACACTTTCCTATGAAGAAAAT 57.021 32.000 0.00 0.00 33.06 1.82
259 260 7.573096 GCATCGAACACTTTCCTATGAAGAAAA 60.573 37.037 0.00 0.00 33.06 2.29
260 261 6.128282 GCATCGAACACTTTCCTATGAAGAAA 60.128 38.462 0.00 0.00 0.00 2.52
261 262 5.351465 GCATCGAACACTTTCCTATGAAGAA 59.649 40.000 0.00 0.00 0.00 2.52
262 263 4.870426 GCATCGAACACTTTCCTATGAAGA 59.130 41.667 0.00 0.00 0.00 2.87
263 264 4.034510 GGCATCGAACACTTTCCTATGAAG 59.965 45.833 0.00 0.00 0.00 3.02
264 265 3.938963 GGCATCGAACACTTTCCTATGAA 59.061 43.478 0.00 0.00 0.00 2.57
265 266 3.197766 AGGCATCGAACACTTTCCTATGA 59.802 43.478 0.00 0.00 0.00 2.15
266 267 3.535561 AGGCATCGAACACTTTCCTATG 58.464 45.455 0.00 0.00 0.00 2.23
267 268 3.914426 AGGCATCGAACACTTTCCTAT 57.086 42.857 0.00 0.00 0.00 2.57
268 269 3.695830 AAGGCATCGAACACTTTCCTA 57.304 42.857 0.00 0.00 0.00 2.94
269 270 2.568623 AAGGCATCGAACACTTTCCT 57.431 45.000 0.00 0.00 0.00 3.36
270 271 2.814336 AGAAAGGCATCGAACACTTTCC 59.186 45.455 23.68 13.22 46.05 3.13
271 272 4.489679 AAGAAAGGCATCGAACACTTTC 57.510 40.909 21.58 21.58 45.54 2.62
272 273 4.918810 AAAGAAAGGCATCGAACACTTT 57.081 36.364 10.20 10.20 35.99 2.66
273 274 5.560183 CGTTAAAGAAAGGCATCGAACACTT 60.560 40.000 0.00 0.00 0.00 3.16
274 275 4.084013 CGTTAAAGAAAGGCATCGAACACT 60.084 41.667 0.00 0.00 0.00 3.55
275 276 4.148891 CGTTAAAGAAAGGCATCGAACAC 58.851 43.478 0.00 0.00 0.00 3.32
276 277 3.187637 CCGTTAAAGAAAGGCATCGAACA 59.812 43.478 0.00 0.00 0.00 3.18
277 278 3.434299 TCCGTTAAAGAAAGGCATCGAAC 59.566 43.478 0.00 0.00 34.45 3.95
278 279 3.666274 TCCGTTAAAGAAAGGCATCGAA 58.334 40.909 0.00 0.00 34.45 3.71
279 280 3.322211 TCCGTTAAAGAAAGGCATCGA 57.678 42.857 0.00 0.00 34.45 3.59
280 281 4.413495 TTTCCGTTAAAGAAAGGCATCG 57.587 40.909 0.00 0.00 34.45 3.84
281 282 5.576774 CCAATTTCCGTTAAAGAAAGGCATC 59.423 40.000 7.69 0.00 36.71 3.91
282 283 5.245075 TCCAATTTCCGTTAAAGAAAGGCAT 59.755 36.000 7.69 0.00 36.71 4.40
283 284 4.585162 TCCAATTTCCGTTAAAGAAAGGCA 59.415 37.500 7.69 0.00 36.71 4.75
284 285 5.128992 TCCAATTTCCGTTAAAGAAAGGC 57.871 39.130 7.69 0.00 36.71 4.35
285 286 7.602753 AGATTCCAATTTCCGTTAAAGAAAGG 58.397 34.615 7.69 5.23 36.71 3.11
314 315 9.374838 GCAATTATTGACATGAAAGAAGGAAAT 57.625 29.630 9.36 0.00 0.00 2.17
315 316 8.366401 TGCAATTATTGACATGAAAGAAGGAAA 58.634 29.630 9.36 0.00 0.00 3.13
316 317 7.814107 GTGCAATTATTGACATGAAAGAAGGAA 59.186 33.333 9.36 0.00 0.00 3.36
317 318 7.315142 GTGCAATTATTGACATGAAAGAAGGA 58.685 34.615 9.36 0.00 0.00 3.36
318 319 6.532657 GGTGCAATTATTGACATGAAAGAAGG 59.467 38.462 9.36 0.00 0.00 3.46
319 320 7.092079 TGGTGCAATTATTGACATGAAAGAAG 58.908 34.615 9.36 0.00 0.00 2.85
320 321 6.990798 TGGTGCAATTATTGACATGAAAGAA 58.009 32.000 9.36 0.00 0.00 2.52
321 322 6.587206 TGGTGCAATTATTGACATGAAAGA 57.413 33.333 9.36 0.00 0.00 2.52
322 323 7.253850 CGATTGGTGCAATTATTGACATGAAAG 60.254 37.037 9.36 0.00 33.90 2.62
323 324 6.530887 CGATTGGTGCAATTATTGACATGAAA 59.469 34.615 9.36 0.00 33.90 2.69
324 325 6.035217 CGATTGGTGCAATTATTGACATGAA 58.965 36.000 9.36 4.45 33.90 2.57
325 326 5.125257 ACGATTGGTGCAATTATTGACATGA 59.875 36.000 9.36 0.00 33.90 3.07
326 327 5.342433 ACGATTGGTGCAATTATTGACATG 58.658 37.500 9.36 0.00 33.90 3.21
327 328 5.581126 ACGATTGGTGCAATTATTGACAT 57.419 34.783 9.36 0.00 33.90 3.06
328 329 5.182950 AGAACGATTGGTGCAATTATTGACA 59.817 36.000 9.36 3.74 33.90 3.58
329 330 5.640732 AGAACGATTGGTGCAATTATTGAC 58.359 37.500 9.36 4.35 33.90 3.18
330 331 5.895636 AGAACGATTGGTGCAATTATTGA 57.104 34.783 9.36 0.00 33.90 2.57
331 332 6.692681 CCTTAGAACGATTGGTGCAATTATTG 59.307 38.462 0.00 0.00 33.90 1.90
332 333 6.601613 TCCTTAGAACGATTGGTGCAATTATT 59.398 34.615 0.00 0.00 33.90 1.40
333 334 6.119536 TCCTTAGAACGATTGGTGCAATTAT 58.880 36.000 0.00 0.00 33.90 1.28
334 335 5.492895 TCCTTAGAACGATTGGTGCAATTA 58.507 37.500 0.00 0.00 33.90 1.40
335 336 4.331968 TCCTTAGAACGATTGGTGCAATT 58.668 39.130 0.00 0.00 33.90 2.32
336 337 3.950397 TCCTTAGAACGATTGGTGCAAT 58.050 40.909 0.00 0.00 36.72 3.56
337 338 3.410631 TCCTTAGAACGATTGGTGCAA 57.589 42.857 0.00 0.00 0.00 4.08
338 339 3.410631 TTCCTTAGAACGATTGGTGCA 57.589 42.857 0.00 0.00 0.00 4.57
339 340 4.000988 TCTTTCCTTAGAACGATTGGTGC 58.999 43.478 0.00 0.00 0.00 5.01
340 341 6.109359 AGATCTTTCCTTAGAACGATTGGTG 58.891 40.000 0.00 0.00 40.13 4.17
341 342 6.301169 AGATCTTTCCTTAGAACGATTGGT 57.699 37.500 0.00 0.00 40.13 3.67
342 343 6.702282 GGTAGATCTTTCCTTAGAACGATTGG 59.298 42.308 0.00 0.00 40.13 3.16
343 344 7.265673 TGGTAGATCTTTCCTTAGAACGATTG 58.734 38.462 0.00 0.00 40.13 2.67
344 345 7.419711 TGGTAGATCTTTCCTTAGAACGATT 57.580 36.000 0.00 0.00 40.13 3.34
345 346 7.342284 TCTTGGTAGATCTTTCCTTAGAACGAT 59.658 37.037 0.00 0.00 42.07 3.73
346 347 6.662234 TCTTGGTAGATCTTTCCTTAGAACGA 59.338 38.462 0.00 0.00 35.03 3.85
347 348 6.864342 TCTTGGTAGATCTTTCCTTAGAACG 58.136 40.000 0.00 0.00 0.00 3.95
354 355 9.445973 AGAGATTATTCTTGGTAGATCTTTCCT 57.554 33.333 0.00 0.00 30.30 3.36
369 370 9.815306 TGCTCCATTAGTAGTAGAGATTATTCT 57.185 33.333 0.00 0.00 33.88 2.40
384 385 4.097418 AGACTACCAACTGCTCCATTAGT 58.903 43.478 0.00 0.00 0.00 2.24
423 425 1.500783 AACCATGGGAGGTGGGACAG 61.501 60.000 18.09 0.00 42.25 3.51
447 451 1.328430 CGAAGGTGGGAGGAGGTACC 61.328 65.000 2.73 2.73 39.35 3.34
448 452 1.957765 GCGAAGGTGGGAGGAGGTAC 61.958 65.000 0.00 0.00 0.00 3.34
538 552 5.007626 TCTGTTCAGATTTCTTTCGTTGTGG 59.992 40.000 0.00 0.00 0.00 4.17
711 726 9.227777 GTTAAGGTAAGGTTAATGTGATTGAGT 57.772 33.333 0.00 0.00 0.00 3.41
822 837 1.686052 CAGAGAGGGAAGGGAAGATCG 59.314 57.143 0.00 0.00 0.00 3.69
864 879 4.802051 GCCCAAGCATCGGCCTCA 62.802 66.667 0.00 0.00 42.56 3.86
901 916 1.826921 GTCCTCGTCCTCCGGCATA 60.827 63.158 0.00 0.00 37.11 3.14
902 917 3.148279 GTCCTCGTCCTCCGGCAT 61.148 66.667 0.00 0.00 37.11 4.40
952 967 3.246112 CCCCCTTCACCGGTCACA 61.246 66.667 2.59 0.00 0.00 3.58
1011 1026 2.847234 ACCGCACCAACTCCCAGA 60.847 61.111 0.00 0.00 0.00 3.86
1066 1081 2.062361 CTTCAAAGTGTGCCTGCGCA 62.062 55.000 10.98 10.98 44.78 6.09
1075 1090 0.178953 ATGGCCCTGCTTCAAAGTGT 60.179 50.000 0.00 0.00 0.00 3.55
1118 1133 1.880027 GTTTCTTGTAGTGTGGCCCAG 59.120 52.381 0.00 0.00 0.00 4.45
1119 1134 1.493022 AGTTTCTTGTAGTGTGGCCCA 59.507 47.619 0.00 0.00 0.00 5.36
1120 1135 2.271944 AGTTTCTTGTAGTGTGGCCC 57.728 50.000 0.00 0.00 0.00 5.80
1122 1137 4.632538 AACAAGTTTCTTGTAGTGTGGC 57.367 40.909 14.16 0.00 31.50 5.01
1123 1138 6.636850 GCATTAACAAGTTTCTTGTAGTGTGG 59.363 38.462 14.16 5.50 31.50 4.17
1124 1139 7.192913 TGCATTAACAAGTTTCTTGTAGTGTG 58.807 34.615 14.16 11.74 31.50 3.82
1125 1140 7.328277 TGCATTAACAAGTTTCTTGTAGTGT 57.672 32.000 14.16 3.42 31.50 3.55
1179 1194 2.909662 TGTACCAGTCCATCCATGACAA 59.090 45.455 0.00 0.00 0.00 3.18
1254 1280 3.041946 GGAGAGGCTGAGGAGGATTTAA 58.958 50.000 0.00 0.00 0.00 1.52
1291 1318 1.454847 GTGTTGACAGGGGGTTGCA 60.455 57.895 0.00 0.00 0.00 4.08
1325 1352 4.724602 GAGGCACGCGCTGAGACA 62.725 66.667 5.73 0.00 38.60 3.41
1607 1645 1.823899 CGAAACCCTAGCCATGGCC 60.824 63.158 33.14 15.39 43.17 5.36
1630 1668 1.080093 GGCGTTGGACATGACTCGA 60.080 57.895 0.00 0.00 0.00 4.04
1633 1671 2.047274 CCGGCGTTGGACATGACT 60.047 61.111 6.01 0.00 0.00 3.41
1782 1821 1.404181 GCAAGTGTCGTGCCAGAGATA 60.404 52.381 0.00 0.00 35.91 1.98
1871 1910 0.249573 GAGCAGAGGAGAGATGCAGC 60.250 60.000 0.00 0.00 42.45 5.25
1876 1915 0.823356 GCTCGGAGCAGAGGAGAGAT 60.823 60.000 24.42 0.00 41.89 2.75
1930 1981 5.780793 ACTATCCCTAGATACAATTCGGCTT 59.219 40.000 0.00 0.00 33.67 4.35
1994 2045 2.665165 TCACTCAAGCCCAAACAACAT 58.335 42.857 0.00 0.00 0.00 2.71
2012 2063 6.826668 TCATTTCAACTAGAGAACACCTTCA 58.173 36.000 0.00 0.00 0.00 3.02
2013 2064 7.155328 TCTCATTTCAACTAGAGAACACCTTC 58.845 38.462 0.00 0.00 34.45 3.46
2255 2310 6.865411 TGACACATATATGCAATGCAACTTT 58.135 32.000 13.45 0.00 43.62 2.66
2506 2561 2.131854 TCTGGAGGGTAGAGAGAGAGG 58.868 57.143 0.00 0.00 0.00 3.69
2540 2629 1.391157 GGTTGTGGAGTTGCAGGCAA 61.391 55.000 1.93 1.93 0.00 4.52
2541 2630 1.827789 GGTTGTGGAGTTGCAGGCA 60.828 57.895 0.00 0.00 0.00 4.75
2553 2642 1.067425 CATGCAGTTCATGGGGTTGTG 60.067 52.381 0.00 0.00 46.81 3.33
2588 2689 8.248253 GGATGGATTTACGTTGGAGTTTTATTT 58.752 33.333 0.00 0.00 0.00 1.40
2601 2702 4.310022 TCCAAAAGGGATGGATTTACGT 57.690 40.909 0.00 0.00 41.98 3.57
2695 2797 1.202710 TGGTTGTGCTACACCACGAAT 60.203 47.619 0.00 0.00 38.55 3.34
2720 2822 5.283457 GGAACTGCTCCAACTAGTGATAT 57.717 43.478 0.00 0.00 44.67 1.63
2721 2823 4.737855 GGAACTGCTCCAACTAGTGATA 57.262 45.455 0.00 0.00 44.67 2.15
2722 2824 3.618690 GGAACTGCTCCAACTAGTGAT 57.381 47.619 0.00 0.00 44.67 3.06
2833 2935 6.206048 TGATGAGTATATGGCATGAGCAAAAG 59.794 38.462 10.98 0.00 44.61 2.27
2922 3024 6.726035 TTCAATTAGAAACGCAAAAGAACG 57.274 33.333 0.00 0.00 32.05 3.95
3038 3140 8.457261 TGTTAGGAAGTAAAACGCAAAGTAAAA 58.543 29.630 0.00 0.00 0.00 1.52
3039 3141 7.983307 TGTTAGGAAGTAAAACGCAAAGTAAA 58.017 30.769 0.00 0.00 0.00 2.01
3077 3179 6.324770 TCAATGAGTACAGCAGGATGAAGATA 59.675 38.462 0.00 0.00 39.69 1.98
3142 3250 5.007234 TCACTTTGTGTCACCTATTTGAACG 59.993 40.000 0.00 0.00 34.79 3.95
3911 5095 5.860182 TCTTCAGTAACACGGATAAACTTCG 59.140 40.000 0.00 0.00 0.00 3.79
4019 5222 7.324935 TCATGAATTCATTGAAAATCCACTGG 58.675 34.615 18.41 2.61 33.61 4.00
4038 5241 9.483916 TTTTTGTAAGAAGTCGAGTATCATGAA 57.516 29.630 0.00 0.00 33.17 2.57
4132 5347 9.109393 GCAATACAGATTTCCAACAATCTAGTA 57.891 33.333 0.00 3.13 40.86 1.82
4158 5373 7.481275 ACAAAAATAGCATTTGTTCACAAGG 57.519 32.000 0.00 0.00 45.97 3.61
4257 5476 2.293122 TCCAACCTGTTTTCTCAATGCG 59.707 45.455 0.00 0.00 0.00 4.73
4262 5481 7.417342 CCATTTTTAGTCCAACCTGTTTTCTCA 60.417 37.037 0.00 0.00 0.00 3.27
4274 5493 6.909550 ACACATTAGCCATTTTTAGTCCAA 57.090 33.333 0.00 0.00 0.00 3.53
4286 5505 5.337410 CCATTCCAATCAAACACATTAGCCA 60.337 40.000 0.00 0.00 0.00 4.75
4333 5638 0.687920 TAATGTGGAGGCCAACACGA 59.312 50.000 20.51 12.51 40.39 4.35
4349 5654 3.716353 TGTGGAGGCCATGTGTATCTAAT 59.284 43.478 5.01 0.00 35.28 1.73
4410 5715 2.476686 CGTCACCGATTTACACGAGCTA 60.477 50.000 0.00 0.00 35.63 3.32
4416 5721 2.545106 ACAAACCGTCACCGATTTACAC 59.455 45.455 0.00 0.00 35.63 2.90
4445 5750 0.251165 GCCAAGCCCAAACTAGGACA 60.251 55.000 0.00 0.00 0.00 4.02
4566 5871 1.769733 CCAAAAACTGTCATGCGTGG 58.230 50.000 5.98 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.