Multiple sequence alignment - TraesCS1A01G093800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G093800 chr1A 100.000 3578 0 0 1 3578 86641857 86638280 0.000000e+00 6608.0
1 TraesCS1A01G093800 chr1A 85.618 445 42 12 1103 1543 585607362 585606936 7.050000e-122 448.0
2 TraesCS1A01G093800 chr1A 84.967 153 22 1 3094 3245 262015889 262015737 1.720000e-33 154.0
3 TraesCS1A01G093800 chr1A 95.000 40 2 0 1 40 492135522 492135483 2.980000e-06 63.9
4 TraesCS1A01G093800 chr1B 87.701 1675 138 36 294 1923 145364173 145362522 0.000000e+00 1890.0
5 TraesCS1A01G093800 chr1B 91.016 768 45 12 2000 2760 145362436 145361686 0.000000e+00 1014.0
6 TraesCS1A01G093800 chr1B 82.270 282 16 16 2759 3028 145361532 145361273 2.800000e-51 213.0
7 TraesCS1A01G093800 chr1B 86.755 151 17 3 3088 3235 150543245 150543395 7.950000e-37 165.0
8 TraesCS1A01G093800 chr1D 85.563 1510 117 53 597 2044 90642115 90640645 0.000000e+00 1487.0
9 TraesCS1A01G093800 chr1D 90.274 1059 65 21 1939 2989 90640542 90639514 0.000000e+00 1351.0
10 TraesCS1A01G093800 chr1D 90.423 355 15 10 215 568 90642778 90642442 1.960000e-122 449.0
11 TraesCS1A01G093800 chr1D 88.922 334 33 3 3094 3423 90634600 90634267 3.330000e-110 409.0
12 TraesCS1A01G093800 chr1D 88.116 345 34 7 3236 3578 90639214 90638875 1.550000e-108 403.0
13 TraesCS1A01G093800 chr1D 89.956 229 20 3 2620 2845 90636016 90635788 3.490000e-75 292.0
14 TraesCS1A01G093800 chr1D 95.690 116 4 1 3463 3578 90634273 90634159 6.100000e-43 185.0
15 TraesCS1A01G093800 chr1D 88.667 150 15 2 3088 3235 101104313 101104164 7.890000e-42 182.0
16 TraesCS1A01G093800 chr1D 83.422 187 21 7 3236 3413 90638850 90638665 7.950000e-37 165.0
17 TraesCS1A01G093800 chr1D 82.979 188 21 7 3236 3413 90634134 90633948 3.700000e-35 159.0
18 TraesCS1A01G093800 chr1D 90.909 88 7 1 2902 2989 90635486 90635400 2.260000e-22 117.0
19 TraesCS1A01G093800 chr1D 100.000 39 0 0 3051 3089 90635299 90635261 4.960000e-09 73.1
20 TraesCS1A01G093800 chr7B 84.196 1063 117 30 997 2026 38036193 38035149 0.000000e+00 985.0
21 TraesCS1A01G093800 chr7B 89.739 575 46 8 997 1565 747795218 747794651 0.000000e+00 723.0
22 TraesCS1A01G093800 chr6B 84.201 1057 116 30 997 2020 85439687 85440725 0.000000e+00 979.0
23 TraesCS1A01G093800 chr7A 90.051 392 33 5 1000 1391 540915583 540915968 1.480000e-138 503.0
24 TraesCS1A01G093800 chr7A 91.111 45 3 1 2 46 727771930 727771887 3.860000e-05 60.2
25 TraesCS1A01G093800 chr5B 86.486 444 39 11 1104 1543 459644860 459644434 5.410000e-128 468.0
26 TraesCS1A01G093800 chr2A 86.486 444 39 11 1104 1543 568010353 568009927 5.410000e-128 468.0
27 TraesCS1A01G093800 chr2A 91.304 46 4 0 1 46 455481915 455481870 2.980000e-06 63.9
28 TraesCS1A01G093800 chr2A 100.000 33 0 0 1 33 27080513 27080481 1.070000e-05 62.1
29 TraesCS1A01G093800 chr2A 100.000 33 0 0 1 33 471775523 471775491 1.070000e-05 62.1
30 TraesCS1A01G093800 chr7D 88.811 143 15 1 3094 3235 53975425 53975567 1.320000e-39 174.0
31 TraesCS1A01G093800 chr3B 88.356 146 16 1 3094 3238 227430877 227430732 1.320000e-39 174.0
32 TraesCS1A01G093800 chr6D 88.112 143 16 1 3094 3235 378032486 378032344 6.140000e-38 169.0
33 TraesCS1A01G093800 chr2B 87.413 143 17 1 3094 3235 335806456 335806314 2.860000e-36 163.0
34 TraesCS1A01G093800 chr3A 86.301 146 19 1 3094 3238 724897700 724897555 1.330000e-34 158.0
35 TraesCS1A01G093800 chr4A 93.617 47 3 0 1 47 594682880 594682926 1.780000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G093800 chr1A 86638280 86641857 3577 True 6608.000000 6608 100.000000 1 3578 1 chr1A.!!$R1 3577
1 TraesCS1A01G093800 chr1B 145361273 145364173 2900 True 1039.000000 1890 86.995667 294 3028 3 chr1B.!!$R1 2734
2 TraesCS1A01G093800 chr1D 90633948 90642778 8830 True 462.736364 1487 89.659455 215 3578 11 chr1D.!!$R2 3363
3 TraesCS1A01G093800 chr7B 38035149 38036193 1044 True 985.000000 985 84.196000 997 2026 1 chr7B.!!$R1 1029
4 TraesCS1A01G093800 chr7B 747794651 747795218 567 True 723.000000 723 89.739000 997 1565 1 chr7B.!!$R2 568
5 TraesCS1A01G093800 chr6B 85439687 85440725 1038 False 979.000000 979 84.201000 997 2020 1 chr6B.!!$F1 1023

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 299 0.105709 AAACCAAACCCCCACCTGAG 60.106 55.0 0.00 0.0 0.0 3.35 F
965 1287 0.312416 CTCCCTCTCGCGGTATCAAG 59.688 60.0 6.13 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2099 2681 0.666274 CAAGGCACAAGCACATGCAG 60.666 55.0 6.64 0.7 43.93 4.41 R
2717 3301 0.040157 GCACAGCAACAGCATTCGAA 60.040 50.0 0.00 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.416083 TCCATACCTGTGACAAGTAATTCG 58.584 41.667 0.00 0.00 0.00 3.34
24 25 4.570772 CCATACCTGTGACAAGTAATTCGG 59.429 45.833 0.00 0.00 0.00 4.30
25 26 5.416083 CATACCTGTGACAAGTAATTCGGA 58.584 41.667 0.00 0.00 0.00 4.55
26 27 4.345859 ACCTGTGACAAGTAATTCGGAA 57.654 40.909 0.00 0.00 0.00 4.30
27 28 4.906618 ACCTGTGACAAGTAATTCGGAAT 58.093 39.130 0.00 0.00 0.00 3.01
28 29 4.695455 ACCTGTGACAAGTAATTCGGAATG 59.305 41.667 3.59 0.00 0.00 2.67
29 30 4.094887 CCTGTGACAAGTAATTCGGAATGG 59.905 45.833 3.59 0.00 0.00 3.16
30 31 4.900684 TGTGACAAGTAATTCGGAATGGA 58.099 39.130 3.59 0.00 0.00 3.41
31 32 4.935205 TGTGACAAGTAATTCGGAATGGAG 59.065 41.667 3.59 0.00 0.00 3.86
32 33 4.332819 GTGACAAGTAATTCGGAATGGAGG 59.667 45.833 3.59 0.00 0.00 4.30
33 34 4.224147 TGACAAGTAATTCGGAATGGAGGA 59.776 41.667 3.59 0.00 0.00 3.71
34 35 5.174037 ACAAGTAATTCGGAATGGAGGAA 57.826 39.130 3.59 0.00 0.00 3.36
35 36 5.566469 ACAAGTAATTCGGAATGGAGGAAA 58.434 37.500 3.59 0.00 0.00 3.13
36 37 6.187682 ACAAGTAATTCGGAATGGAGGAAAT 58.812 36.000 3.59 0.00 0.00 2.17
37 38 7.343357 ACAAGTAATTCGGAATGGAGGAAATA 58.657 34.615 3.59 0.00 0.00 1.40
38 39 7.499232 ACAAGTAATTCGGAATGGAGGAAATAG 59.501 37.037 3.59 0.00 0.00 1.73
39 40 7.374975 AGTAATTCGGAATGGAGGAAATAGA 57.625 36.000 3.59 0.00 0.00 1.98
40 41 7.978925 AGTAATTCGGAATGGAGGAAATAGAT 58.021 34.615 3.59 0.00 0.00 1.98
41 42 8.440771 AGTAATTCGGAATGGAGGAAATAGATT 58.559 33.333 3.59 0.00 0.00 2.40
42 43 9.067986 GTAATTCGGAATGGAGGAAATAGATTT 57.932 33.333 3.59 0.00 0.00 2.17
43 44 8.539117 AATTCGGAATGGAGGAAATAGATTTT 57.461 30.769 3.59 0.00 0.00 1.82
44 45 7.954666 TTCGGAATGGAGGAAATAGATTTTT 57.045 32.000 0.00 0.00 0.00 1.94
76 77 6.633668 GGTACGACACATATGCTCATATTC 57.366 41.667 1.58 0.00 31.98 1.75
77 78 5.286320 GGTACGACACATATGCTCATATTCG 59.714 44.000 15.36 15.36 37.46 3.34
78 79 3.675225 ACGACACATATGCTCATATTCGC 59.325 43.478 16.25 0.00 36.09 4.70
79 80 3.241458 CGACACATATGCTCATATTCGCG 60.241 47.826 0.00 0.00 31.98 5.87
80 81 3.653344 ACACATATGCTCATATTCGCGT 58.347 40.909 5.77 0.00 31.98 6.01
81 82 4.805219 ACACATATGCTCATATTCGCGTA 58.195 39.130 5.77 0.00 31.98 4.42
82 83 5.410924 ACACATATGCTCATATTCGCGTAT 58.589 37.500 5.77 4.29 38.50 3.06
83 84 6.560711 ACACATATGCTCATATTCGCGTATA 58.439 36.000 5.77 7.01 36.49 1.47
84 85 7.203218 ACACATATGCTCATATTCGCGTATAT 58.797 34.615 11.92 11.92 36.49 0.86
85 86 8.349983 ACACATATGCTCATATTCGCGTATATA 58.650 33.333 16.50 8.89 36.49 0.86
86 87 9.346725 CACATATGCTCATATTCGCGTATATAT 57.653 33.333 16.50 9.99 36.49 0.86
91 92 8.149973 TGCTCATATTCGCGTATATATACTCA 57.850 34.615 16.50 8.77 0.00 3.41
92 93 8.784043 TGCTCATATTCGCGTATATATACTCAT 58.216 33.333 16.50 6.23 0.00 2.90
93 94 9.268255 GCTCATATTCGCGTATATATACTCATC 57.732 37.037 16.50 6.36 0.00 2.92
108 109 4.928661 ACTCATCTTCATAAACGCACAC 57.071 40.909 0.00 0.00 0.00 3.82
109 110 4.314961 ACTCATCTTCATAAACGCACACA 58.685 39.130 0.00 0.00 0.00 3.72
110 111 4.152402 ACTCATCTTCATAAACGCACACAC 59.848 41.667 0.00 0.00 0.00 3.82
111 112 4.314961 TCATCTTCATAAACGCACACACT 58.685 39.130 0.00 0.00 0.00 3.55
112 113 4.388773 TCATCTTCATAAACGCACACACTC 59.611 41.667 0.00 0.00 0.00 3.51
113 114 3.990092 TCTTCATAAACGCACACACTCT 58.010 40.909 0.00 0.00 0.00 3.24
114 115 4.377021 TCTTCATAAACGCACACACTCTT 58.623 39.130 0.00 0.00 0.00 2.85
115 116 4.814234 TCTTCATAAACGCACACACTCTTT 59.186 37.500 0.00 0.00 0.00 2.52
116 117 5.295787 TCTTCATAAACGCACACACTCTTTT 59.704 36.000 0.00 0.00 0.00 2.27
117 118 5.493133 TCATAAACGCACACACTCTTTTT 57.507 34.783 0.00 0.00 0.00 1.94
135 136 1.064946 TTTTTGCGGCTGGTGAACG 59.935 52.632 0.00 0.00 0.00 3.95
140 141 4.012895 CGGCTGGTGAACGCACAC 62.013 66.667 4.34 4.34 46.96 3.82
141 142 2.899838 GGCTGGTGAACGCACACA 60.900 61.111 13.11 1.13 46.96 3.72
142 143 2.327940 GCTGGTGAACGCACACAC 59.672 61.111 13.11 0.00 46.96 3.82
143 144 2.180204 GCTGGTGAACGCACACACT 61.180 57.895 13.11 0.00 46.96 3.55
144 145 1.934463 CTGGTGAACGCACACACTC 59.066 57.895 13.11 0.00 46.96 3.51
145 146 0.530650 CTGGTGAACGCACACACTCT 60.531 55.000 13.11 0.00 46.96 3.24
146 147 0.747852 TGGTGAACGCACACACTCTA 59.252 50.000 13.11 0.00 46.96 2.43
147 148 1.137282 TGGTGAACGCACACACTCTAA 59.863 47.619 13.11 0.00 46.96 2.10
148 149 1.525619 GGTGAACGCACACACTCTAAC 59.474 52.381 13.11 0.00 46.96 2.34
149 150 1.525619 GTGAACGCACACACTCTAACC 59.474 52.381 7.53 0.00 44.51 2.85
150 151 1.411246 TGAACGCACACACTCTAACCT 59.589 47.619 0.00 0.00 0.00 3.50
151 152 2.059541 GAACGCACACACTCTAACCTC 58.940 52.381 0.00 0.00 0.00 3.85
152 153 1.037493 ACGCACACACTCTAACCTCA 58.963 50.000 0.00 0.00 0.00 3.86
153 154 1.618837 ACGCACACACTCTAACCTCAT 59.381 47.619 0.00 0.00 0.00 2.90
154 155 2.037251 ACGCACACACTCTAACCTCATT 59.963 45.455 0.00 0.00 0.00 2.57
155 156 2.413112 CGCACACACTCTAACCTCATTG 59.587 50.000 0.00 0.00 0.00 2.82
156 157 3.403038 GCACACACTCTAACCTCATTGT 58.597 45.455 0.00 0.00 0.00 2.71
157 158 3.433615 GCACACACTCTAACCTCATTGTC 59.566 47.826 0.00 0.00 0.00 3.18
158 159 3.675225 CACACACTCTAACCTCATTGTCG 59.325 47.826 0.00 0.00 0.00 4.35
159 160 3.572682 ACACACTCTAACCTCATTGTCGA 59.427 43.478 0.00 0.00 0.00 4.20
160 161 4.220821 ACACACTCTAACCTCATTGTCGAT 59.779 41.667 0.00 0.00 0.00 3.59
161 162 4.564372 CACACTCTAACCTCATTGTCGATG 59.436 45.833 0.00 0.00 37.08 3.84
162 163 3.553511 CACTCTAACCTCATTGTCGATGC 59.446 47.826 0.00 0.00 35.64 3.91
163 164 3.195610 ACTCTAACCTCATTGTCGATGCA 59.804 43.478 0.00 0.00 35.64 3.96
164 165 4.183865 CTCTAACCTCATTGTCGATGCAA 58.816 43.478 0.00 0.00 35.64 4.08
165 166 4.183865 TCTAACCTCATTGTCGATGCAAG 58.816 43.478 0.00 0.00 35.64 4.01
166 167 1.089920 ACCTCATTGTCGATGCAAGC 58.910 50.000 0.00 0.00 35.64 4.01
176 177 1.723870 GATGCAAGCGACATGTCCC 59.276 57.895 20.03 11.46 0.00 4.46
177 178 1.002257 ATGCAAGCGACATGTCCCA 60.002 52.632 20.03 9.70 0.00 4.37
178 179 1.308069 ATGCAAGCGACATGTCCCAC 61.308 55.000 20.03 9.87 0.00 4.61
179 180 3.027170 GCAAGCGACATGTCCCACG 62.027 63.158 20.03 10.17 0.00 4.94
180 181 2.047274 AAGCGACATGTCCCACGG 60.047 61.111 20.03 6.79 0.00 4.94
181 182 2.579657 AAGCGACATGTCCCACGGA 61.580 57.895 20.03 0.00 0.00 4.69
182 183 2.047655 GCGACATGTCCCACGGAA 60.048 61.111 20.03 0.00 31.38 4.30
183 184 2.388232 GCGACATGTCCCACGGAAC 61.388 63.158 20.03 0.00 31.38 3.62
184 185 1.740296 CGACATGTCCCACGGAACC 60.740 63.158 20.03 0.00 31.38 3.62
185 186 1.373435 GACATGTCCCACGGAACCA 59.627 57.895 15.31 0.00 31.38 3.67
186 187 0.673644 GACATGTCCCACGGAACCAG 60.674 60.000 15.31 0.00 31.38 4.00
187 188 1.374947 CATGTCCCACGGAACCAGT 59.625 57.895 0.00 0.00 31.38 4.00
188 189 0.611200 CATGTCCCACGGAACCAGTA 59.389 55.000 0.00 0.00 31.38 2.74
189 190 1.209504 CATGTCCCACGGAACCAGTAT 59.790 52.381 0.00 0.00 31.38 2.12
190 191 0.899720 TGTCCCACGGAACCAGTATC 59.100 55.000 0.00 0.00 31.38 2.24
191 192 0.899720 GTCCCACGGAACCAGTATCA 59.100 55.000 0.00 0.00 31.38 2.15
192 193 1.276989 GTCCCACGGAACCAGTATCAA 59.723 52.381 0.00 0.00 31.38 2.57
193 194 1.276989 TCCCACGGAACCAGTATCAAC 59.723 52.381 0.00 0.00 0.00 3.18
194 195 1.355971 CCACGGAACCAGTATCAACG 58.644 55.000 0.00 0.00 0.00 4.10
195 196 1.067425 CCACGGAACCAGTATCAACGA 60.067 52.381 0.00 0.00 0.00 3.85
196 197 2.610976 CCACGGAACCAGTATCAACGAA 60.611 50.000 0.00 0.00 0.00 3.85
197 198 3.061322 CACGGAACCAGTATCAACGAAA 58.939 45.455 0.00 0.00 0.00 3.46
198 199 3.495377 CACGGAACCAGTATCAACGAAAA 59.505 43.478 0.00 0.00 0.00 2.29
199 200 4.024725 CACGGAACCAGTATCAACGAAAAA 60.025 41.667 0.00 0.00 0.00 1.94
200 201 4.758165 ACGGAACCAGTATCAACGAAAAAT 59.242 37.500 0.00 0.00 0.00 1.82
201 202 5.239963 ACGGAACCAGTATCAACGAAAAATT 59.760 36.000 0.00 0.00 0.00 1.82
202 203 5.567534 CGGAACCAGTATCAACGAAAAATTG 59.432 40.000 0.00 0.00 0.00 2.32
203 204 6.566942 CGGAACCAGTATCAACGAAAAATTGA 60.567 38.462 0.00 0.00 40.25 2.57
204 205 7.312899 GGAACCAGTATCAACGAAAAATTGAT 58.687 34.615 5.62 5.62 46.18 2.57
205 206 7.812669 GGAACCAGTATCAACGAAAAATTGATT 59.187 33.333 5.61 0.00 42.81 2.57
206 207 9.191995 GAACCAGTATCAACGAAAAATTGATTT 57.808 29.630 5.61 0.00 42.81 2.17
207 208 9.541143 AACCAGTATCAACGAAAAATTGATTTT 57.459 25.926 5.61 0.00 42.81 1.82
249 250 8.616076 CAATGTCAAATCTAGAACATAACCTCC 58.384 37.037 7.95 0.00 0.00 4.30
288 290 3.127895 GCAGAAAAACCAAAACCAAACCC 59.872 43.478 0.00 0.00 0.00 4.11
297 299 0.105709 AAACCAAACCCCCACCTGAG 60.106 55.000 0.00 0.00 0.00 3.35
370 372 0.458260 AAAACCGGTGGTCTTGTTGC 59.542 50.000 8.52 0.00 33.12 4.17
372 374 3.353836 CCGGTGGTCTTGTTGCGG 61.354 66.667 0.00 0.00 0.00 5.69
483 486 6.591062 CACCACAAAACATATTCCATTCCAAG 59.409 38.462 0.00 0.00 0.00 3.61
486 489 7.331687 CCACAAAACATATTCCATTCCAAGAAC 59.668 37.037 0.00 0.00 0.00 3.01
488 491 7.872483 ACAAAACATATTCCATTCCAAGAACAC 59.128 33.333 0.00 0.00 0.00 3.32
490 493 6.515272 ACATATTCCATTCCAAGAACACAC 57.485 37.500 0.00 0.00 0.00 3.82
492 495 4.853924 ATTCCATTCCAAGAACACACAC 57.146 40.909 0.00 0.00 0.00 3.82
669 971 3.498071 CCACCACCCACACCCACT 61.498 66.667 0.00 0.00 0.00 4.00
801 1123 1.533731 CTTAACGCGGAAGGCAAAAGA 59.466 47.619 12.47 0.00 43.84 2.52
802 1124 1.595466 TAACGCGGAAGGCAAAAGAA 58.405 45.000 12.47 0.00 43.84 2.52
843 1165 6.531503 TCGGTTTCATATTGTCTCTCTCTT 57.468 37.500 0.00 0.00 0.00 2.85
844 1166 6.565234 TCGGTTTCATATTGTCTCTCTCTTC 58.435 40.000 0.00 0.00 0.00 2.87
845 1167 6.378564 TCGGTTTCATATTGTCTCTCTCTTCT 59.621 38.462 0.00 0.00 0.00 2.85
846 1168 6.695278 CGGTTTCATATTGTCTCTCTCTTCTC 59.305 42.308 0.00 0.00 0.00 2.87
847 1169 7.416213 CGGTTTCATATTGTCTCTCTCTTCTCT 60.416 40.741 0.00 0.00 0.00 3.10
859 1181 7.444487 GTCTCTCTCTTCTCTTCCCTATAAGAC 59.556 44.444 0.00 0.00 32.18 3.01
877 1199 2.366972 CCCCGATTCCCCACCTCT 60.367 66.667 0.00 0.00 0.00 3.69
894 1216 0.394216 TCTGCCAAATCCATCCACCG 60.394 55.000 0.00 0.00 0.00 4.94
959 1281 3.914579 TTCGTCTCCCTCTCGCGGT 62.915 63.158 6.13 0.00 0.00 5.68
965 1287 0.312416 CTCCCTCTCGCGGTATCAAG 59.688 60.000 6.13 0.00 0.00 3.02
966 1288 1.300233 CCCTCTCGCGGTATCAAGC 60.300 63.158 6.13 0.00 0.00 4.01
985 1307 3.917760 CAGCTCCGTCGATCCCCC 61.918 72.222 0.00 0.00 0.00 5.40
986 1308 4.458829 AGCTCCGTCGATCCCCCA 62.459 66.667 0.00 0.00 0.00 4.96
988 1310 3.537874 CTCCGTCGATCCCCCACC 61.538 72.222 0.00 0.00 0.00 4.61
989 1311 4.070265 TCCGTCGATCCCCCACCT 62.070 66.667 0.00 0.00 0.00 4.00
1067 1392 2.029221 GGCGGTAAGGGATCTCGC 59.971 66.667 0.00 0.00 44.80 5.03
1092 1417 4.286910 CGAGATTTGTTTCGGCTTTTCAA 58.713 39.130 0.00 0.00 33.39 2.69
1093 1418 4.917415 CGAGATTTGTTTCGGCTTTTCAAT 59.083 37.500 0.00 0.00 33.39 2.57
1095 1420 6.074356 CGAGATTTGTTTCGGCTTTTCAATTT 60.074 34.615 0.00 0.00 33.39 1.82
1097 1422 5.382573 TTTGTTTCGGCTTTTCAATTTCG 57.617 34.783 0.00 0.00 0.00 3.46
1098 1423 3.376540 TGTTTCGGCTTTTCAATTTCGG 58.623 40.909 0.00 0.00 0.00 4.30
1124 1456 2.363306 TTTGGTGCTGATCTGTGGTT 57.637 45.000 1.27 0.00 0.00 3.67
1125 1457 2.363306 TTGGTGCTGATCTGTGGTTT 57.637 45.000 1.27 0.00 0.00 3.27
1126 1458 1.608055 TGGTGCTGATCTGTGGTTTG 58.392 50.000 1.27 0.00 0.00 2.93
1127 1459 1.133823 TGGTGCTGATCTGTGGTTTGT 60.134 47.619 1.27 0.00 0.00 2.83
1128 1460 1.956477 GGTGCTGATCTGTGGTTTGTT 59.044 47.619 1.27 0.00 0.00 2.83
1416 1748 6.681368 GCAAGGTGAGAACAATTGAGAAACTT 60.681 38.462 13.59 4.37 31.05 2.66
1417 1749 6.382869 AGGTGAGAACAATTGAGAAACTTG 57.617 37.500 13.59 0.00 0.00 3.16
1481 1813 2.110578 AGTTCCTGGCTGTTGCTTTTT 58.889 42.857 0.00 0.00 39.59 1.94
1484 1816 1.216941 CCTGGCTGTTGCTTTTTGCG 61.217 55.000 0.00 0.00 46.63 4.85
1494 1826 1.609580 TGCTTTTTGCGACGGGAGTAT 60.610 47.619 0.00 0.00 46.63 2.12
1543 1878 2.219674 GCATCTGCGTAGTGTTATGAGC 59.780 50.000 0.00 0.00 0.00 4.26
1551 1886 4.357142 CGTAGTGTTATGAGCCGTTATGT 58.643 43.478 0.00 0.00 0.00 2.29
1553 1888 4.465632 AGTGTTATGAGCCGTTATGTCA 57.534 40.909 0.00 0.00 0.00 3.58
1556 1891 5.880332 AGTGTTATGAGCCGTTATGTCAATT 59.120 36.000 0.00 0.00 0.00 2.32
1561 1896 8.395633 GTTATGAGCCGTTATGTCAATTAAACT 58.604 33.333 0.00 0.00 0.00 2.66
1565 1900 4.793216 GCCGTTATGTCAATTAAACTGCTG 59.207 41.667 0.00 0.00 31.77 4.41
1567 1902 5.123186 CCGTTATGTCAATTAAACTGCTGGA 59.877 40.000 0.00 0.00 0.00 3.86
1568 1903 6.183360 CCGTTATGTCAATTAAACTGCTGGAT 60.183 38.462 0.00 0.00 0.00 3.41
1574 1926 7.946207 TGTCAATTAAACTGCTGGATTGTTTA 58.054 30.769 0.00 0.00 35.77 2.01
1631 1995 8.255111 TGATGATGTCCTGATAGTTTGATACT 57.745 34.615 0.00 0.00 41.04 2.12
1632 1996 9.367160 TGATGATGTCCTGATAGTTTGATACTA 57.633 33.333 0.00 0.00 43.29 1.82
1633 1997 9.632807 GATGATGTCCTGATAGTTTGATACTAC 57.367 37.037 0.00 0.00 41.99 2.73
1635 1999 7.785028 TGATGTCCTGATAGTTTGATACTACCT 59.215 37.037 0.00 0.00 41.99 3.08
1637 2001 8.693120 TGTCCTGATAGTTTGATACTACCTAG 57.307 38.462 0.00 0.00 41.99 3.02
1638 2002 7.724506 TGTCCTGATAGTTTGATACTACCTAGG 59.275 40.741 7.41 7.41 41.99 3.02
1639 2003 7.943447 GTCCTGATAGTTTGATACTACCTAGGA 59.057 40.741 17.98 0.00 41.99 2.94
1640 2004 8.164733 TCCTGATAGTTTGATACTACCTAGGAG 58.835 40.741 17.98 11.09 41.99 3.69
1642 2006 9.575868 CTGATAGTTTGATACTACCTAGGAGAA 57.424 37.037 17.98 0.00 41.99 2.87
1646 2010 8.840200 AGTTTGATACTACCTAGGAGAATCAA 57.160 34.615 17.98 19.31 33.07 2.57
1647 2011 8.919145 AGTTTGATACTACCTAGGAGAATCAAG 58.081 37.037 17.98 3.52 33.07 3.02
1648 2012 7.841282 TTGATACTACCTAGGAGAATCAAGG 57.159 40.000 17.98 0.00 43.32 3.61
1678 2043 4.202441 GCCAATCTGTTGATCACATACCT 58.798 43.478 0.00 0.00 37.53 3.08
1705 2070 6.160801 TCTGAACACCAGAGGAACTGACTTA 61.161 44.000 0.00 0.00 46.38 2.24
1716 2081 6.322712 AGAGGAACTGACTTATTAGGCACTAG 59.677 42.308 0.00 0.00 40.88 2.57
1791 2161 6.670464 TGGATTGTAGGATCTTAGTTGGTACA 59.330 38.462 0.00 0.00 0.00 2.90
1815 2185 6.146021 CAGGGCAAAATTGAGTTGATGTTAAC 59.854 38.462 0.00 0.00 0.00 2.01
1821 2191 8.352201 CAAAATTGAGTTGATGTTAACTGAGGA 58.648 33.333 7.22 0.00 40.78 3.71
1823 2193 9.739276 AAATTGAGTTGATGTTAACTGAGGATA 57.261 29.630 7.22 0.00 40.78 2.59
1853 2223 2.236766 GCTTGCATCTATCTGGGCAAT 58.763 47.619 0.00 0.00 44.32 3.56
1879 2253 4.322057 AATGGGATTGGCTACAACTCTT 57.678 40.909 0.00 0.00 39.87 2.85
1880 2254 3.071874 TGGGATTGGCTACAACTCTTG 57.928 47.619 0.00 0.00 39.87 3.02
1919 2293 6.862209 TGTCCAATTTATCAACACAATAGCC 58.138 36.000 0.00 0.00 0.00 3.93
1923 2297 7.831690 TCCAATTTATCAACACAATAGCCTGTA 59.168 33.333 0.00 0.00 0.00 2.74
1937 2336 8.917088 ACAATAGCCTGTAAAGCAAATATCATT 58.083 29.630 0.00 0.00 0.00 2.57
1961 2360 6.795144 ATAACATGGGCATTTGAATTCAGA 57.205 33.333 8.41 4.49 0.00 3.27
1998 2397 3.791353 GCAACTGATTTATTGGTTAGCGC 59.209 43.478 0.00 0.00 0.00 5.92
2020 2419 0.890683 GGCAAGGCTTATGCAGTGTT 59.109 50.000 12.83 0.00 45.60 3.32
2026 2426 5.106317 GCAAGGCTTATGCAGTGTTAACTAA 60.106 40.000 7.22 0.00 43.29 2.24
2027 2427 6.314784 CAAGGCTTATGCAGTGTTAACTAAC 58.685 40.000 7.22 0.00 41.91 2.34
2028 2428 5.805728 AGGCTTATGCAGTGTTAACTAACT 58.194 37.500 7.22 0.00 41.91 2.24
2047 2447 9.614792 AACTAACTGTTTCTTCATTTCTACACT 57.385 29.630 0.00 0.00 34.84 3.55
2053 2454 6.018262 TGTTTCTTCATTTCTACACTTCCACG 60.018 38.462 0.00 0.00 0.00 4.94
2059 2460 2.363788 TCTACACTTCCACGTGCATC 57.636 50.000 10.91 0.00 38.45 3.91
2127 2711 0.963962 CTTGTGCCTTGCAGGTTGAT 59.036 50.000 0.00 0.00 40.08 2.57
2145 2729 1.830477 GATGAGTCTGTCCAGGAGCTT 59.170 52.381 0.00 0.00 0.00 3.74
2181 2765 2.741092 GTCGTGAAGGAGGTGCCA 59.259 61.111 0.00 0.00 40.02 4.92
2304 2888 1.763634 GCGACTTGTATACCCGCTAC 58.236 55.000 16.42 0.00 42.24 3.58
2442 3026 1.376424 CTCTGCCGTGCTTGATGGT 60.376 57.895 0.00 0.00 32.49 3.55
2481 3065 2.125961 CGCTACCTACCTCCCGCTT 61.126 63.158 0.00 0.00 0.00 4.68
2490 3074 2.742372 CTCCCGCTTGTCCCAACG 60.742 66.667 0.00 0.00 0.00 4.10
2499 3083 3.195698 GTCCCAACGGAGCGCATC 61.196 66.667 11.47 4.01 39.51 3.91
2511 3095 4.963815 CGCATCGCAAGGGTTTTT 57.036 50.000 0.00 0.00 38.47 1.94
2530 3114 4.162690 CCTACCCGGCAGCTGACC 62.163 72.222 20.43 17.09 0.00 4.02
2599 3183 3.518303 ACAATAAGAGCTACCCGGAGTTT 59.482 43.478 0.73 0.00 0.00 2.66
2627 3211 6.821031 ATTACCTAATAGCTGTAGGAGTCG 57.179 41.667 24.75 5.51 40.67 4.18
2636 3220 2.806019 GCTGTAGGAGTCGGTATCTCGA 60.806 54.545 0.00 0.00 36.76 4.04
2650 3234 5.512473 GGTATCTCGATGTAGTGTCTTGTC 58.488 45.833 0.00 0.00 0.00 3.18
2673 3257 1.878953 CTTGTGGTGGACAGTGGTAC 58.121 55.000 0.00 0.00 35.44 3.34
2677 3261 4.050315 TGTGGTGGACAGTGGTACTATA 57.950 45.455 0.00 0.00 0.00 1.31
2705 3289 0.179108 GTCACTGTGGTATCCGCCTC 60.179 60.000 8.11 0.00 32.22 4.70
2709 3293 0.537188 CTGTGGTATCCGCCTCTGTT 59.463 55.000 0.00 0.00 32.22 3.16
2769 3509 6.589907 CCTGCTTTGTGTTTTAGTTTGTTCTT 59.410 34.615 0.00 0.00 0.00 2.52
2832 3572 7.233348 ACAGGAAACACCATCTGTAAATTCATT 59.767 33.333 0.00 0.00 38.52 2.57
2856 3596 6.165659 ACTGTTTTTATGCGAGTGTGTATC 57.834 37.500 0.00 0.00 0.00 2.24
2887 3636 7.220741 TGGCACTGTTTTATTTGCTATTACA 57.779 32.000 0.00 0.00 35.24 2.41
2888 3637 7.661968 TGGCACTGTTTTATTTGCTATTACAA 58.338 30.769 0.00 0.00 35.24 2.41
2982 3731 3.642848 AGTGTGGGCAAATGATTTTGAGT 59.357 39.130 2.78 0.00 44.11 3.41
3041 7924 4.502016 TGATTAGCAGTCTCAGAAAGCTG 58.498 43.478 11.46 0.00 43.67 4.24
3042 7925 5.624052 CTGATTAGCAGTCTCAGAAAGCTGA 60.624 44.000 11.46 4.74 42.93 4.26
3089 7992 4.262938 CCATGACATCTGCACAGATAGGAT 60.263 45.833 12.62 2.95 45.78 3.24
3090 7993 4.332428 TGACATCTGCACAGATAGGATG 57.668 45.455 12.62 7.97 45.78 3.51
3091 7994 3.070590 TGACATCTGCACAGATAGGATGG 59.929 47.826 12.62 2.84 45.78 3.51
3092 7995 2.224475 ACATCTGCACAGATAGGATGGC 60.224 50.000 12.62 0.00 45.78 4.40
3093 7996 1.499368 TCTGCACAGATAGGATGGCA 58.501 50.000 0.00 0.00 31.41 4.92
3094 7997 1.839354 TCTGCACAGATAGGATGGCAA 59.161 47.619 0.00 0.00 31.41 4.52
3098 8658 3.633525 TGCACAGATAGGATGGCAATTTC 59.366 43.478 0.00 0.00 0.00 2.17
3104 8664 1.838112 AGGATGGCAATTTCGCTTGA 58.162 45.000 0.00 0.00 0.00 3.02
3113 8673 3.611530 GCAATTTCGCTTGAGCTTGGTTA 60.612 43.478 1.07 0.00 39.32 2.85
3118 8678 4.202245 TCGCTTGAGCTTGGTTAGTTAT 57.798 40.909 1.07 0.00 39.32 1.89
3120 8680 3.932710 CGCTTGAGCTTGGTTAGTTATCA 59.067 43.478 1.07 0.00 39.32 2.15
3135 8695 8.466798 GGTTAGTTATCATGTTTACTTGCCAAT 58.533 33.333 1.11 0.00 0.00 3.16
3136 8696 9.855021 GTTAGTTATCATGTTTACTTGCCAATT 57.145 29.630 1.11 0.00 0.00 2.32
3139 8699 7.754924 AGTTATCATGTTTACTTGCCAATTTCG 59.245 33.333 0.00 0.00 0.00 3.46
3177 8737 5.975693 TTTTGGGAACTTTCGATATTGCT 57.024 34.783 0.00 0.00 0.00 3.91
3235 8796 6.106648 TGTTGGCATCAAACAAATTATCCA 57.893 33.333 0.00 0.00 34.28 3.41
3251 8812 9.037737 CAAATTATCCACAGAATTTTATGCTGG 57.962 33.333 0.00 0.00 32.23 4.85
3254 8815 2.762327 CCACAGAATTTTATGCTGGGCT 59.238 45.455 0.00 0.00 31.80 5.19
3267 8828 0.657840 CTGGGCTATGCAAACGCTAC 59.342 55.000 0.00 0.00 0.00 3.58
3302 8863 1.098050 GCCATGACAAAGGCGATTCT 58.902 50.000 6.54 0.00 41.70 2.40
3316 8877 3.004171 GCGATTCTCGGAGCTCTAGATA 58.996 50.000 14.64 3.87 40.84 1.98
3319 8880 4.328983 CGATTCTCGGAGCTCTAGATAGTC 59.671 50.000 14.64 10.95 36.00 2.59
3370 8931 4.794278 TTATAAGCTTCAGGACACGACA 57.206 40.909 0.00 0.00 0.00 4.35
3380 8941 3.773117 GACACGACATGGCCAAAAG 57.227 52.632 10.96 5.45 0.00 2.27
3386 8949 2.223711 ACGACATGGCCAAAAGAACAAC 60.224 45.455 10.96 0.00 0.00 3.32
3394 8957 2.347150 GCCAAAAGAACAACCACAAACG 59.653 45.455 0.00 0.00 0.00 3.60
3408 8971 1.203523 ACAAACGGAAAACAAGCTGCA 59.796 42.857 1.02 0.00 0.00 4.41
3414 8977 2.472488 CGGAAAACAAGCTGCACATTTC 59.528 45.455 1.02 7.00 0.00 2.17
3417 8980 4.919754 GGAAAACAAGCTGCACATTTCTAG 59.080 41.667 1.02 0.00 0.00 2.43
3421 8984 2.490903 CAAGCTGCACATTTCTAGCCTT 59.509 45.455 1.02 0.00 36.86 4.35
3422 8985 2.800250 AGCTGCACATTTCTAGCCTTT 58.200 42.857 1.02 0.00 36.86 3.11
3423 8986 2.751806 AGCTGCACATTTCTAGCCTTTC 59.248 45.455 1.02 0.00 36.86 2.62
3424 8987 2.751806 GCTGCACATTTCTAGCCTTTCT 59.248 45.455 0.00 0.00 0.00 2.52
3425 8988 3.181502 GCTGCACATTTCTAGCCTTTCTC 60.182 47.826 0.00 0.00 0.00 2.87
3426 8989 4.260170 CTGCACATTTCTAGCCTTTCTCT 58.740 43.478 0.00 0.00 0.00 3.10
3427 8990 5.420725 TGCACATTTCTAGCCTTTCTCTA 57.579 39.130 0.00 0.00 0.00 2.43
3428 8991 5.804639 TGCACATTTCTAGCCTTTCTCTAA 58.195 37.500 0.00 0.00 0.00 2.10
3429 8992 6.418101 TGCACATTTCTAGCCTTTCTCTAAT 58.582 36.000 0.00 0.00 0.00 1.73
3430 8993 6.317140 TGCACATTTCTAGCCTTTCTCTAATG 59.683 38.462 0.00 0.00 0.00 1.90
3431 8994 6.540189 GCACATTTCTAGCCTTTCTCTAATGA 59.460 38.462 0.00 0.00 0.00 2.57
3432 8995 7.066284 GCACATTTCTAGCCTTTCTCTAATGAA 59.934 37.037 0.00 0.00 0.00 2.57
3433 8996 9.118300 CACATTTCTAGCCTTTCTCTAATGAAT 57.882 33.333 0.00 0.00 0.00 2.57
3434 8997 9.692325 ACATTTCTAGCCTTTCTCTAATGAATT 57.308 29.630 0.00 0.00 0.00 2.17
3435 8998 9.947669 CATTTCTAGCCTTTCTCTAATGAATTG 57.052 33.333 0.00 0.00 0.00 2.32
3436 8999 9.692325 ATTTCTAGCCTTTCTCTAATGAATTGT 57.308 29.630 0.00 0.00 0.00 2.71
3438 9001 9.823647 TTCTAGCCTTTCTCTAATGAATTGTAG 57.176 33.333 0.00 0.00 0.00 2.74
3439 9002 8.982723 TCTAGCCTTTCTCTAATGAATTGTAGT 58.017 33.333 0.00 0.00 0.00 2.73
3442 9005 8.207545 AGCCTTTCTCTAATGAATTGTAGTAGG 58.792 37.037 0.00 0.00 0.00 3.18
3443 9006 8.204836 GCCTTTCTCTAATGAATTGTAGTAGGA 58.795 37.037 0.00 0.00 0.00 2.94
3444 9007 9.757227 CCTTTCTCTAATGAATTGTAGTAGGAG 57.243 37.037 0.00 0.00 0.00 3.69
3455 9018 9.764363 TGAATTGTAGTAGGAGTATATGCAAAG 57.236 33.333 0.00 0.00 0.00 2.77
3456 9019 9.982651 GAATTGTAGTAGGAGTATATGCAAAGA 57.017 33.333 0.00 0.00 0.00 2.52
3460 9023 9.809395 TGTAGTAGGAGTATATGCAAAGATACT 57.191 33.333 15.42 15.42 40.73 2.12
3462 9025 8.941995 AGTAGGAGTATATGCAAAGATACTGA 57.058 34.615 18.73 6.39 38.66 3.41
3463 9026 9.368416 AGTAGGAGTATATGCAAAGATACTGAA 57.632 33.333 18.73 6.28 38.66 3.02
3464 9027 9.413048 GTAGGAGTATATGCAAAGATACTGAAC 57.587 37.037 18.73 12.03 38.66 3.18
3465 9028 7.445945 AGGAGTATATGCAAAGATACTGAACC 58.554 38.462 18.73 14.69 38.66 3.62
3466 9029 6.366332 GGAGTATATGCAAAGATACTGAACCG 59.634 42.308 18.73 0.00 38.66 4.44
3477 9040 0.900421 ACTGAACCGTTAGTAGGGCC 59.100 55.000 0.00 0.00 32.40 5.80
3504 9067 2.307768 TCTTCTCTCGAACACACAGGT 58.692 47.619 0.00 0.00 0.00 4.00
3565 9128 3.256136 TCACAACCACGTTTTCAGGTTTT 59.744 39.130 4.60 0.00 42.72 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.416083 CGAATTACTTGTCACAGGTATGGA 58.584 41.667 0.00 0.00 0.00 3.41
1 2 4.570772 CCGAATTACTTGTCACAGGTATGG 59.429 45.833 0.00 0.00 0.00 2.74
2 3 5.416083 TCCGAATTACTTGTCACAGGTATG 58.584 41.667 0.00 0.00 0.00 2.39
3 4 5.670792 TCCGAATTACTTGTCACAGGTAT 57.329 39.130 0.00 0.00 0.00 2.73
4 5 5.471556 TTCCGAATTACTTGTCACAGGTA 57.528 39.130 0.00 0.00 0.00 3.08
5 6 4.345859 TTCCGAATTACTTGTCACAGGT 57.654 40.909 0.00 0.00 0.00 4.00
6 7 4.094887 CCATTCCGAATTACTTGTCACAGG 59.905 45.833 0.00 0.00 0.00 4.00
7 8 4.935205 TCCATTCCGAATTACTTGTCACAG 59.065 41.667 0.00 0.00 0.00 3.66
8 9 4.900684 TCCATTCCGAATTACTTGTCACA 58.099 39.130 0.00 0.00 0.00 3.58
9 10 4.332819 CCTCCATTCCGAATTACTTGTCAC 59.667 45.833 0.00 0.00 0.00 3.67
10 11 4.224147 TCCTCCATTCCGAATTACTTGTCA 59.776 41.667 0.00 0.00 0.00 3.58
11 12 4.766375 TCCTCCATTCCGAATTACTTGTC 58.234 43.478 0.00 0.00 0.00 3.18
12 13 4.837093 TCCTCCATTCCGAATTACTTGT 57.163 40.909 0.00 0.00 0.00 3.16
13 14 6.699575 ATTTCCTCCATTCCGAATTACTTG 57.300 37.500 0.00 0.00 0.00 3.16
14 15 7.802117 TCTATTTCCTCCATTCCGAATTACTT 58.198 34.615 0.00 0.00 0.00 2.24
15 16 7.374975 TCTATTTCCTCCATTCCGAATTACT 57.625 36.000 0.00 0.00 0.00 2.24
16 17 8.622948 AATCTATTTCCTCCATTCCGAATTAC 57.377 34.615 0.00 0.00 0.00 1.89
17 18 9.640952 AAAATCTATTTCCTCCATTCCGAATTA 57.359 29.630 0.00 0.00 0.00 1.40
18 19 8.539117 AAAATCTATTTCCTCCATTCCGAATT 57.461 30.769 0.00 0.00 0.00 2.17
19 20 8.539117 AAAAATCTATTTCCTCCATTCCGAAT 57.461 30.769 0.00 0.00 0.00 3.34
20 21 7.954666 AAAAATCTATTTCCTCCATTCCGAA 57.045 32.000 0.00 0.00 0.00 4.30
41 42 5.536554 TGTGTCGTACCGTGTTTTAAAAA 57.463 34.783 1.31 0.00 0.00 1.94
42 43 5.731599 ATGTGTCGTACCGTGTTTTAAAA 57.268 34.783 0.00 0.00 0.00 1.52
43 44 6.618166 GCATATGTGTCGTACCGTGTTTTAAA 60.618 38.462 4.29 0.00 0.00 1.52
44 45 5.163972 GCATATGTGTCGTACCGTGTTTTAA 60.164 40.000 4.29 0.00 0.00 1.52
45 46 4.326817 GCATATGTGTCGTACCGTGTTTTA 59.673 41.667 4.29 0.00 0.00 1.52
46 47 3.123959 GCATATGTGTCGTACCGTGTTTT 59.876 43.478 4.29 0.00 0.00 2.43
47 48 2.669434 GCATATGTGTCGTACCGTGTTT 59.331 45.455 4.29 0.00 0.00 2.83
48 49 2.094390 AGCATATGTGTCGTACCGTGTT 60.094 45.455 4.29 0.00 0.00 3.32
49 50 1.475280 AGCATATGTGTCGTACCGTGT 59.525 47.619 4.29 0.00 0.00 4.49
50 51 2.117137 GAGCATATGTGTCGTACCGTG 58.883 52.381 4.29 0.00 0.00 4.94
51 52 1.746787 TGAGCATATGTGTCGTACCGT 59.253 47.619 4.29 0.00 0.00 4.83
52 53 2.485266 TGAGCATATGTGTCGTACCG 57.515 50.000 4.29 0.00 0.00 4.02
53 54 5.286320 CGAATATGAGCATATGTGTCGTACC 59.714 44.000 4.29 3.62 34.45 3.34
54 55 5.220043 GCGAATATGAGCATATGTGTCGTAC 60.220 44.000 17.39 5.57 35.56 3.67
55 56 4.857037 GCGAATATGAGCATATGTGTCGTA 59.143 41.667 17.39 7.88 35.56 3.43
56 57 3.675225 GCGAATATGAGCATATGTGTCGT 59.325 43.478 17.39 5.96 35.56 4.34
57 58 3.241458 CGCGAATATGAGCATATGTGTCG 60.241 47.826 0.00 14.22 35.91 4.35
58 59 3.675225 ACGCGAATATGAGCATATGTGTC 59.325 43.478 15.93 2.60 34.45 3.67
59 60 3.653344 ACGCGAATATGAGCATATGTGT 58.347 40.909 15.93 3.29 34.45 3.72
60 61 5.956171 ATACGCGAATATGAGCATATGTG 57.044 39.130 15.93 2.75 34.45 3.21
65 66 8.784043 TGAGTATATATACGCGAATATGAGCAT 58.216 33.333 15.93 0.00 38.28 3.79
66 67 8.149973 TGAGTATATATACGCGAATATGAGCA 57.850 34.615 15.93 9.40 38.28 4.26
67 68 9.268255 GATGAGTATATATACGCGAATATGAGC 57.732 37.037 15.93 8.06 38.28 4.26
82 83 9.406828 GTGTGCGTTTATGAAGATGAGTATATA 57.593 33.333 0.00 0.00 0.00 0.86
83 84 7.926018 TGTGTGCGTTTATGAAGATGAGTATAT 59.074 33.333 0.00 0.00 0.00 0.86
84 85 7.222031 GTGTGTGCGTTTATGAAGATGAGTATA 59.778 37.037 0.00 0.00 0.00 1.47
85 86 6.036083 GTGTGTGCGTTTATGAAGATGAGTAT 59.964 38.462 0.00 0.00 0.00 2.12
86 87 5.347635 GTGTGTGCGTTTATGAAGATGAGTA 59.652 40.000 0.00 0.00 0.00 2.59
87 88 4.152402 GTGTGTGCGTTTATGAAGATGAGT 59.848 41.667 0.00 0.00 0.00 3.41
88 89 4.389992 AGTGTGTGCGTTTATGAAGATGAG 59.610 41.667 0.00 0.00 0.00 2.90
89 90 4.314961 AGTGTGTGCGTTTATGAAGATGA 58.685 39.130 0.00 0.00 0.00 2.92
90 91 4.389992 AGAGTGTGTGCGTTTATGAAGATG 59.610 41.667 0.00 0.00 0.00 2.90
91 92 4.569943 AGAGTGTGTGCGTTTATGAAGAT 58.430 39.130 0.00 0.00 0.00 2.40
92 93 3.990092 AGAGTGTGTGCGTTTATGAAGA 58.010 40.909 0.00 0.00 0.00 2.87
93 94 4.732285 AAGAGTGTGTGCGTTTATGAAG 57.268 40.909 0.00 0.00 0.00 3.02
94 95 5.493133 AAAAGAGTGTGTGCGTTTATGAA 57.507 34.783 0.00 0.00 0.00 2.57
95 96 5.493133 AAAAAGAGTGTGTGCGTTTATGA 57.507 34.783 0.00 0.00 0.00 2.15
117 118 1.064946 CGTTCACCAGCCGCAAAAA 59.935 52.632 0.00 0.00 0.00 1.94
118 119 2.718731 CGTTCACCAGCCGCAAAA 59.281 55.556 0.00 0.00 0.00 2.44
119 120 3.959975 GCGTTCACCAGCCGCAAA 61.960 61.111 0.00 0.00 46.26 3.68
123 124 4.012895 GTGTGCGTTCACCAGCCG 62.013 66.667 1.69 0.00 42.46 5.52
124 125 2.899838 TGTGTGCGTTCACCAGCC 60.900 61.111 8.97 0.00 42.46 4.85
125 126 2.105960 GAGTGTGTGCGTTCACCAGC 62.106 60.000 8.97 0.00 42.46 4.85
126 127 0.530650 AGAGTGTGTGCGTTCACCAG 60.531 55.000 8.97 0.00 42.46 4.00
127 128 0.747852 TAGAGTGTGTGCGTTCACCA 59.252 50.000 8.97 0.00 42.46 4.17
128 129 1.525619 GTTAGAGTGTGTGCGTTCACC 59.474 52.381 8.97 2.60 42.46 4.02
129 130 1.525619 GGTTAGAGTGTGTGCGTTCAC 59.474 52.381 5.43 5.43 43.40 3.18
130 131 1.411246 AGGTTAGAGTGTGTGCGTTCA 59.589 47.619 0.00 0.00 0.00 3.18
131 132 2.059541 GAGGTTAGAGTGTGTGCGTTC 58.940 52.381 0.00 0.00 0.00 3.95
132 133 1.411246 TGAGGTTAGAGTGTGTGCGTT 59.589 47.619 0.00 0.00 0.00 4.84
133 134 1.037493 TGAGGTTAGAGTGTGTGCGT 58.963 50.000 0.00 0.00 0.00 5.24
134 135 2.370281 ATGAGGTTAGAGTGTGTGCG 57.630 50.000 0.00 0.00 0.00 5.34
135 136 3.403038 ACAATGAGGTTAGAGTGTGTGC 58.597 45.455 0.00 0.00 0.00 4.57
136 137 3.675225 CGACAATGAGGTTAGAGTGTGTG 59.325 47.826 0.00 0.00 0.00 3.82
137 138 3.572682 TCGACAATGAGGTTAGAGTGTGT 59.427 43.478 0.00 0.00 0.00 3.72
138 139 4.174411 TCGACAATGAGGTTAGAGTGTG 57.826 45.455 0.00 0.00 0.00 3.82
139 140 4.748892 CATCGACAATGAGGTTAGAGTGT 58.251 43.478 0.00 0.00 37.59 3.55
140 141 3.553511 GCATCGACAATGAGGTTAGAGTG 59.446 47.826 0.00 0.00 37.59 3.51
141 142 3.195610 TGCATCGACAATGAGGTTAGAGT 59.804 43.478 0.00 0.00 37.59 3.24
142 143 3.785486 TGCATCGACAATGAGGTTAGAG 58.215 45.455 0.00 0.00 37.59 2.43
143 144 3.885724 TGCATCGACAATGAGGTTAGA 57.114 42.857 0.00 0.00 37.59 2.10
144 145 3.242543 GCTTGCATCGACAATGAGGTTAG 60.243 47.826 0.00 0.00 37.59 2.34
145 146 2.677836 GCTTGCATCGACAATGAGGTTA 59.322 45.455 0.00 0.00 37.59 2.85
146 147 1.470098 GCTTGCATCGACAATGAGGTT 59.530 47.619 0.00 0.00 37.59 3.50
147 148 1.089920 GCTTGCATCGACAATGAGGT 58.910 50.000 0.00 0.00 37.59 3.85
148 149 0.027194 CGCTTGCATCGACAATGAGG 59.973 55.000 3.11 0.00 37.59 3.86
149 150 1.001624 TCGCTTGCATCGACAATGAG 58.998 50.000 7.38 0.00 37.59 2.90
150 151 3.135942 TCGCTTGCATCGACAATGA 57.864 47.368 7.38 0.00 37.59 2.57
156 157 1.083806 GGACATGTCGCTTGCATCGA 61.084 55.000 19.33 7.38 0.00 3.59
157 158 1.349627 GGACATGTCGCTTGCATCG 59.650 57.895 19.33 2.85 0.00 3.84
158 159 1.026182 TGGGACATGTCGCTTGCATC 61.026 55.000 34.30 13.69 42.28 3.91
159 160 1.002257 TGGGACATGTCGCTTGCAT 60.002 52.632 34.30 0.00 42.28 3.96
160 161 1.965930 GTGGGACATGTCGCTTGCA 60.966 57.895 34.30 17.89 44.52 4.08
161 162 2.870372 GTGGGACATGTCGCTTGC 59.130 61.111 34.30 23.28 44.52 4.01
162 163 2.390599 CCGTGGGACATGTCGCTTG 61.391 63.158 34.30 26.89 45.33 4.01
163 164 2.047274 CCGTGGGACATGTCGCTT 60.047 61.111 34.30 0.00 45.33 4.68
164 165 2.579657 TTCCGTGGGACATGTCGCT 61.580 57.895 34.30 0.00 45.33 4.93
165 166 2.047655 TTCCGTGGGACATGTCGC 60.048 61.111 30.28 30.28 45.33 5.19
166 167 1.740296 GGTTCCGTGGGACATGTCG 60.740 63.158 19.33 8.65 45.33 4.35
167 168 0.673644 CTGGTTCCGTGGGACATGTC 60.674 60.000 17.91 17.91 45.33 3.06
168 169 1.374947 CTGGTTCCGTGGGACATGT 59.625 57.895 0.00 0.00 45.33 3.21
169 170 0.611200 TACTGGTTCCGTGGGACATG 59.389 55.000 0.00 0.00 44.52 3.21
170 171 1.485066 GATACTGGTTCCGTGGGACAT 59.515 52.381 0.00 0.00 44.52 3.06
171 172 0.899720 GATACTGGTTCCGTGGGACA 59.100 55.000 0.00 0.00 0.00 4.02
172 173 0.899720 TGATACTGGTTCCGTGGGAC 59.100 55.000 0.00 0.00 0.00 4.46
173 174 1.276989 GTTGATACTGGTTCCGTGGGA 59.723 52.381 0.00 0.00 0.00 4.37
174 175 1.734163 GTTGATACTGGTTCCGTGGG 58.266 55.000 0.00 0.00 0.00 4.61
175 176 1.067425 TCGTTGATACTGGTTCCGTGG 60.067 52.381 0.00 0.00 0.00 4.94
176 177 2.357327 TCGTTGATACTGGTTCCGTG 57.643 50.000 0.00 0.00 0.00 4.94
177 178 3.389925 TTTCGTTGATACTGGTTCCGT 57.610 42.857 0.00 0.00 0.00 4.69
178 179 4.735662 TTTTTCGTTGATACTGGTTCCG 57.264 40.909 0.00 0.00 0.00 4.30
179 180 6.674066 TCAATTTTTCGTTGATACTGGTTCC 58.326 36.000 0.00 0.00 31.07 3.62
180 181 8.742554 AATCAATTTTTCGTTGATACTGGTTC 57.257 30.769 2.19 0.00 43.49 3.62
181 182 9.541143 AAAATCAATTTTTCGTTGATACTGGTT 57.459 25.926 2.19 0.00 43.49 3.67
182 183 9.541143 AAAAATCAATTTTTCGTTGATACTGGT 57.459 25.926 7.47 0.00 44.17 4.00
220 221 9.941664 GGTTATGTTCTAGATTTGACATTGATG 57.058 33.333 11.93 0.00 0.00 3.07
297 299 2.813908 CCCAACTGGACGCGTAGC 60.814 66.667 13.97 0.00 45.56 3.58
357 359 0.534203 TTCTCCGCAACAAGACCACC 60.534 55.000 0.00 0.00 0.00 4.61
498 502 3.543099 CGTGTTTTACGCTTTTCGGTTTT 59.457 39.130 0.00 0.00 46.92 2.43
552 556 0.723459 GGCGGTTTTGCGTTTACGAG 60.723 55.000 6.44 0.00 43.02 4.18
672 974 4.128388 CAAAATGGGGCCCGCGTC 62.128 66.667 19.83 1.35 0.00 5.19
680 982 3.401804 GGGGCAGGCAAAATGGGG 61.402 66.667 0.00 0.00 0.00 4.96
686 988 2.203480 GACAGTGGGGCAGGCAAA 60.203 61.111 0.00 0.00 0.00 3.68
727 1029 2.539081 GGCTTCCAGAAGGGGGTGT 61.539 63.158 9.36 0.00 38.80 4.16
802 1124 1.658094 CGATCGGACGCGTTTGTTTTT 60.658 47.619 15.53 0.00 0.00 1.94
809 1131 2.048877 AAACCGATCGGACGCGTT 60.049 55.556 39.55 20.50 38.96 4.84
843 1165 2.158355 CGGGGGTCTTATAGGGAAGAGA 60.158 54.545 0.00 0.00 36.13 3.10
844 1166 2.158355 TCGGGGGTCTTATAGGGAAGAG 60.158 54.545 0.00 0.00 36.13 2.85
845 1167 1.861574 TCGGGGGTCTTATAGGGAAGA 59.138 52.381 0.00 0.00 32.97 2.87
846 1168 2.393630 TCGGGGGTCTTATAGGGAAG 57.606 55.000 0.00 0.00 0.00 3.46
847 1169 3.245441 GAATCGGGGGTCTTATAGGGAA 58.755 50.000 0.00 0.00 0.00 3.97
859 1181 3.489513 GAGGTGGGGAATCGGGGG 61.490 72.222 0.00 0.00 0.00 5.40
877 1199 0.038890 TTCGGTGGATGGATTTGGCA 59.961 50.000 0.00 0.00 0.00 4.92
894 1216 2.379005 CTGCTAGGGTTTTGGGGATTC 58.621 52.381 0.00 0.00 0.00 2.52
959 1281 1.226974 GACGGAGCTGCGCTTGATA 60.227 57.895 28.46 0.00 39.88 2.15
966 1288 4.933064 GGGATCGACGGAGCTGCG 62.933 72.222 26.95 26.95 0.00 5.18
969 1291 4.458829 TGGGGGATCGACGGAGCT 62.459 66.667 0.00 0.00 0.00 4.09
970 1292 4.222847 GTGGGGGATCGACGGAGC 62.223 72.222 0.00 0.00 0.00 4.70
971 1293 2.635787 TAGGTGGGGGATCGACGGAG 62.636 65.000 0.00 0.00 0.00 4.63
972 1294 2.227494 TTAGGTGGGGGATCGACGGA 62.227 60.000 0.00 0.00 0.00 4.69
974 1296 0.754217 TCTTAGGTGGGGGATCGACG 60.754 60.000 0.00 0.00 0.00 5.12
985 1307 1.661341 GCCATCACTGCTCTTAGGTG 58.339 55.000 0.00 0.00 0.00 4.00
986 1308 0.176680 CGCCATCACTGCTCTTAGGT 59.823 55.000 0.00 0.00 0.00 3.08
988 1310 0.460811 TGCGCCATCACTGCTCTTAG 60.461 55.000 4.18 0.00 0.00 2.18
989 1311 0.460811 CTGCGCCATCACTGCTCTTA 60.461 55.000 4.18 0.00 0.00 2.10
1085 1410 6.257630 ACCAAATCACAACCGAAATTGAAAAG 59.742 34.615 1.69 0.00 33.57 2.27
1090 1415 3.184178 GCACCAAATCACAACCGAAATTG 59.816 43.478 0.00 0.00 35.59 2.32
1092 1417 2.627699 AGCACCAAATCACAACCGAAAT 59.372 40.909 0.00 0.00 0.00 2.17
1093 1418 2.028130 AGCACCAAATCACAACCGAAA 58.972 42.857 0.00 0.00 0.00 3.46
1095 1420 0.950836 CAGCACCAAATCACAACCGA 59.049 50.000 0.00 0.00 0.00 4.69
1097 1422 2.821969 AGATCAGCACCAAATCACAACC 59.178 45.455 0.00 0.00 0.00 3.77
1098 1423 3.254166 ACAGATCAGCACCAAATCACAAC 59.746 43.478 0.00 0.00 0.00 3.32
1124 1456 2.951745 CGCGCGCCAACAAAACAA 60.952 55.556 27.72 0.00 0.00 2.83
1416 1748 9.719355 TCACATACAGCTAAGAAATAAAGTTCA 57.281 29.630 0.00 0.00 0.00 3.18
1440 1772 7.824289 GGAACTGGATCGGATAATAAATCATCA 59.176 37.037 0.00 0.00 0.00 3.07
1441 1773 8.043710 AGGAACTGGATCGGATAATAAATCATC 58.956 37.037 0.00 0.00 37.18 2.92
1443 1775 7.316393 AGGAACTGGATCGGATAATAAATCA 57.684 36.000 0.00 0.00 37.18 2.57
1481 1813 1.945394 GAACTAGATACTCCCGTCGCA 59.055 52.381 0.00 0.00 0.00 5.10
1484 1816 3.243134 GCACAGAACTAGATACTCCCGTC 60.243 52.174 0.00 0.00 0.00 4.79
1494 1826 4.528206 TGAAATCAGGAGCACAGAACTAGA 59.472 41.667 0.00 0.00 0.00 2.43
1530 1865 5.345702 TGACATAACGGCTCATAACACTAC 58.654 41.667 0.00 0.00 0.00 2.73
1543 1878 5.123186 TCCAGCAGTTTAATTGACATAACGG 59.877 40.000 0.00 0.00 0.00 4.44
1594 1957 8.996651 TCAGGACATCATCAGTATTACTAAGA 57.003 34.615 0.00 0.00 0.00 2.10
1602 1965 8.255111 TCAAACTATCAGGACATCATCAGTAT 57.745 34.615 0.00 0.00 0.00 2.12
1606 1969 8.255111 AGTATCAAACTATCAGGACATCATCA 57.745 34.615 0.00 0.00 36.36 3.07
1631 1995 5.590818 AGAACACCTTGATTCTCCTAGGTA 58.409 41.667 9.08 0.00 38.93 3.08
1632 1996 4.430441 AGAACACCTTGATTCTCCTAGGT 58.570 43.478 9.08 0.00 41.58 3.08
1633 1997 5.428184 AAGAACACCTTGATTCTCCTAGG 57.572 43.478 0.82 0.82 34.01 3.02
1644 2008 7.177063 TCAACAGATTGGCAAGAACACCTTG 62.177 44.000 5.96 0.00 43.29 3.61
1645 2009 2.949447 ACAGATTGGCAAGAACACCTT 58.051 42.857 5.96 0.00 34.91 3.50
1646 2010 2.624838 CAACAGATTGGCAAGAACACCT 59.375 45.455 5.96 0.00 31.63 4.00
1647 2011 2.622942 TCAACAGATTGGCAAGAACACC 59.377 45.455 5.96 0.00 36.39 4.16
1648 2012 3.988379 TCAACAGATTGGCAAGAACAC 57.012 42.857 5.96 0.00 36.39 3.32
1649 2013 4.022935 GTGATCAACAGATTGGCAAGAACA 60.023 41.667 5.96 0.00 36.39 3.18
1653 2018 4.713824 ATGTGATCAACAGATTGGCAAG 57.286 40.909 5.96 0.00 43.64 4.01
1656 2021 4.202441 AGGTATGTGATCAACAGATTGGC 58.798 43.478 0.00 0.00 43.64 4.52
1659 2024 6.596888 CAGACAAGGTATGTGATCAACAGATT 59.403 38.462 0.00 0.00 44.12 2.40
1678 2043 2.771943 AGTTCCTCTGGTGTTCAGACAA 59.228 45.455 0.00 0.00 46.71 3.18
1716 2081 5.925969 ACAGCTGCCAACAACAAATTATAAC 59.074 36.000 15.27 0.00 0.00 1.89
1791 2161 4.961438 AACATCAACTCAATTTTGCCCT 57.039 36.364 0.00 0.00 0.00 5.19
1815 2185 7.210718 TGCAAGCAAAATATGATATCCTCAG 57.789 36.000 0.00 0.00 37.28 3.35
1823 2193 7.093902 CCCAGATAGATGCAAGCAAAATATGAT 60.094 37.037 0.00 0.00 0.00 2.45
1853 2223 3.358111 TGTAGCCAATCCCATTTCGAA 57.642 42.857 0.00 0.00 0.00 3.71
1923 2297 8.649591 TGCCCATGTTATAATGATATTTGCTTT 58.350 29.630 0.00 0.00 0.00 3.51
1926 2325 9.439500 AAATGCCCATGTTATAATGATATTTGC 57.561 29.630 0.00 0.00 0.00 3.68
1937 2336 7.894753 TCTGAATTCAAATGCCCATGTTATA 57.105 32.000 9.88 0.00 0.00 0.98
1998 2397 0.745845 ACTGCATAAGCCTTGCCTCG 60.746 55.000 0.00 0.00 41.13 4.63
2007 2406 6.481954 ACAGTTAGTTAACACTGCATAAGC 57.518 37.500 20.37 0.00 43.72 3.09
2026 2426 7.012421 GTGGAAGTGTAGAAATGAAGAAACAGT 59.988 37.037 0.00 0.00 0.00 3.55
2027 2427 7.355778 GTGGAAGTGTAGAAATGAAGAAACAG 58.644 38.462 0.00 0.00 0.00 3.16
2028 2428 6.018262 CGTGGAAGTGTAGAAATGAAGAAACA 60.018 38.462 0.00 0.00 0.00 2.83
2099 2681 0.666274 CAAGGCACAAGCACATGCAG 60.666 55.000 6.64 0.70 43.93 4.41
2127 2711 0.972134 CAAGCTCCTGGACAGACTCA 59.028 55.000 0.00 0.00 0.00 3.41
2181 2765 2.190578 GCAGAGCGGGCATAGGTT 59.809 61.111 0.00 0.00 0.00 3.50
2286 2870 1.599071 TCGTAGCGGGTATACAAGTCG 59.401 52.381 5.01 4.28 0.00 4.18
2442 3026 1.671054 GGAGTTGCCACGCTTAGCA 60.671 57.895 4.70 0.00 37.18 3.49
2466 3050 0.685458 GGACAAGCGGGAGGTAGGTA 60.685 60.000 0.00 0.00 41.46 3.08
2481 3065 3.950794 GATGCGCTCCGTTGGGACA 62.951 63.158 9.73 0.00 37.43 4.02
2515 3099 4.715130 AGGGTCAGCTGCCGGGTA 62.715 66.667 9.47 0.00 0.00 3.69
2627 3211 5.297278 AGACAAGACACTACATCGAGATACC 59.703 44.000 0.00 0.00 0.00 2.73
2636 3220 3.071602 ACAAGCCAGACAAGACACTACAT 59.928 43.478 0.00 0.00 0.00 2.29
2650 3234 1.149174 ACTGTCCACCACAAGCCAG 59.851 57.895 0.00 0.00 33.31 4.85
2673 3257 4.101585 ACCACAGTGACCATCCACATATAG 59.898 45.833 0.62 0.00 39.42 1.31
2677 3261 1.067295 ACCACAGTGACCATCCACAT 58.933 50.000 0.62 0.00 39.42 3.21
2705 3289 1.672881 GCATTCGAATCCCCTCAACAG 59.327 52.381 7.92 0.00 0.00 3.16
2709 3293 0.911769 ACAGCATTCGAATCCCCTCA 59.088 50.000 7.92 0.00 0.00 3.86
2717 3301 0.040157 GCACAGCAACAGCATTCGAA 60.040 50.000 0.00 0.00 0.00 3.71
2769 3509 3.501828 GCATTACACACAGTGGTTCATGA 59.498 43.478 5.31 0.00 37.94 3.07
2809 3549 8.739972 AGTAATGAATTTACAGATGGTGTTTCC 58.260 33.333 0.00 0.00 42.30 3.13
2832 3572 6.034150 CGATACACACTCGCATAAAAACAGTA 59.966 38.462 0.00 0.00 0.00 2.74
2856 3596 3.896648 ATAAAACAGTGCCAACAGTCG 57.103 42.857 0.00 0.00 0.00 4.18
2887 3636 5.009631 TGGTAAACAATGCATACTGCTCTT 58.990 37.500 0.00 0.00 45.31 2.85
2888 3637 4.396166 GTGGTAAACAATGCATACTGCTCT 59.604 41.667 0.00 0.00 45.31 4.09
3003 7885 6.121590 TGCTAATCAGTCCAGAAATATGCAA 58.878 36.000 0.00 0.00 0.00 4.08
3041 7924 7.078228 GTGATACACAAGTTTCAATGGAACTC 58.922 38.462 7.47 0.00 37.44 3.01
3042 7925 6.016276 GGTGATACACAAGTTTCAATGGAACT 60.016 38.462 0.06 0.06 37.44 3.01
3043 7926 6.149633 GGTGATACACAAGTTTCAATGGAAC 58.850 40.000 0.00 0.00 37.44 3.62
3044 7927 5.830457 TGGTGATACACAAGTTTCAATGGAA 59.170 36.000 0.00 0.00 37.44 3.53
3045 7928 5.380900 TGGTGATACACAAGTTTCAATGGA 58.619 37.500 0.00 0.00 37.44 3.41
3046 7929 5.703978 TGGTGATACACAAGTTTCAATGG 57.296 39.130 0.00 0.00 37.44 3.16
3047 7930 6.803320 GTCATGGTGATACACAAGTTTCAATG 59.197 38.462 0.00 0.00 37.44 2.82
3049 7932 5.825151 TGTCATGGTGATACACAAGTTTCAA 59.175 36.000 0.00 0.00 37.44 2.69
3104 8664 8.730680 CAAGTAAACATGATAACTAACCAAGCT 58.269 33.333 0.00 0.00 0.00 3.74
3113 8673 7.754924 CGAAATTGGCAAGTAAACATGATAACT 59.245 33.333 5.96 0.00 0.00 2.24
3118 8678 4.233789 GCGAAATTGGCAAGTAAACATGA 58.766 39.130 5.96 0.00 0.00 3.07
3120 8680 4.250116 TGCGAAATTGGCAAGTAAACAT 57.750 36.364 5.96 0.00 37.49 2.71
3161 8721 7.044052 GCCAACAATTAGCAATATCGAAAGTTC 60.044 37.037 0.00 0.00 0.00 3.01
3168 8728 4.442073 GCAAGCCAACAATTAGCAATATCG 59.558 41.667 0.00 0.00 0.00 2.92
3226 8787 8.206189 CCCAGCATAAAATTCTGTGGATAATTT 58.794 33.333 0.00 0.00 36.98 1.82
3235 8796 4.038402 GCATAGCCCAGCATAAAATTCTGT 59.962 41.667 0.00 0.00 0.00 3.41
3244 8805 1.308047 CGTTTGCATAGCCCAGCATA 58.692 50.000 0.00 0.00 40.94 3.14
3246 8807 2.699768 GCGTTTGCATAGCCCAGCA 61.700 57.895 0.00 0.00 42.15 4.41
3251 8812 2.287009 GGATTGTAGCGTTTGCATAGCC 60.287 50.000 5.16 0.00 46.23 3.93
3254 8815 3.867857 TCTGGATTGTAGCGTTTGCATA 58.132 40.909 0.00 0.00 46.23 3.14
3302 8863 3.078097 GCATGACTATCTAGAGCTCCGA 58.922 50.000 10.93 8.00 0.00 4.55
3316 8877 8.355169 CACCTTTTGCTTATATAATGCATGACT 58.645 33.333 15.66 0.00 36.55 3.41
3319 8880 8.971321 GTTCACCTTTTGCTTATATAATGCATG 58.029 33.333 15.66 12.12 36.55 4.06
3331 8892 8.150296 AGCTTATAAAATGTTCACCTTTTGCTT 58.850 29.630 3.89 0.00 0.00 3.91
3352 8913 2.353704 CCATGTCGTGTCCTGAAGCTTA 60.354 50.000 0.00 0.00 0.00 3.09
3370 8931 2.114616 TGTGGTTGTTCTTTTGGCCAT 58.885 42.857 6.09 0.00 0.00 4.40
3380 8941 3.576648 TGTTTTCCGTTTGTGGTTGTTC 58.423 40.909 0.00 0.00 0.00 3.18
3386 8949 2.192624 CAGCTTGTTTTCCGTTTGTGG 58.807 47.619 0.00 0.00 0.00 4.17
3394 8957 3.721035 AGAAATGTGCAGCTTGTTTTCC 58.279 40.909 0.00 0.00 0.00 3.13
3408 8971 9.692325 AATTCATTAGAGAAAGGCTAGAAATGT 57.308 29.630 0.00 0.00 0.00 2.71
3417 8980 8.204836 TCCTACTACAATTCATTAGAGAAAGGC 58.795 37.037 0.00 0.00 0.00 4.35
3429 8992 9.764363 CTTTGCATATACTCCTACTACAATTCA 57.236 33.333 0.00 0.00 0.00 2.57
3430 8993 9.982651 TCTTTGCATATACTCCTACTACAATTC 57.017 33.333 0.00 0.00 0.00 2.17
3434 8997 9.809395 AGTATCTTTGCATATACTCCTACTACA 57.191 33.333 9.80 0.00 34.55 2.74
3437 9000 8.941995 TCAGTATCTTTGCATATACTCCTACT 57.058 34.615 11.80 0.00 36.91 2.57
3438 9001 9.413048 GTTCAGTATCTTTGCATATACTCCTAC 57.587 37.037 11.80 8.14 36.91 3.18
3439 9002 8.585881 GGTTCAGTATCTTTGCATATACTCCTA 58.414 37.037 11.80 2.32 36.91 2.94
3440 9003 7.445945 GGTTCAGTATCTTTGCATATACTCCT 58.554 38.462 11.80 0.00 36.91 3.69
3441 9004 6.366332 CGGTTCAGTATCTTTGCATATACTCC 59.634 42.308 11.80 10.15 36.91 3.85
3442 9005 6.924060 ACGGTTCAGTATCTTTGCATATACTC 59.076 38.462 11.80 4.50 36.91 2.59
3443 9006 6.817184 ACGGTTCAGTATCTTTGCATATACT 58.183 36.000 9.80 9.80 39.04 2.12
3444 9007 7.478520 AACGGTTCAGTATCTTTGCATATAC 57.521 36.000 0.00 0.00 0.00 1.47
3445 9008 8.418662 ACTAACGGTTCAGTATCTTTGCATATA 58.581 33.333 0.00 0.00 0.00 0.86
3446 9009 7.272978 ACTAACGGTTCAGTATCTTTGCATAT 58.727 34.615 0.00 0.00 0.00 1.78
3447 9010 6.636705 ACTAACGGTTCAGTATCTTTGCATA 58.363 36.000 0.00 0.00 0.00 3.14
3448 9011 5.488341 ACTAACGGTTCAGTATCTTTGCAT 58.512 37.500 0.00 0.00 0.00 3.96
3449 9012 4.890088 ACTAACGGTTCAGTATCTTTGCA 58.110 39.130 0.00 0.00 0.00 4.08
3450 9013 5.519206 CCTACTAACGGTTCAGTATCTTTGC 59.481 44.000 0.00 0.00 0.00 3.68
3451 9014 6.040878 CCCTACTAACGGTTCAGTATCTTTG 58.959 44.000 0.00 0.00 0.00 2.77
3452 9015 5.394993 GCCCTACTAACGGTTCAGTATCTTT 60.395 44.000 0.00 0.00 0.00 2.52
3453 9016 4.099113 GCCCTACTAACGGTTCAGTATCTT 59.901 45.833 0.00 0.00 0.00 2.40
3454 9017 3.635836 GCCCTACTAACGGTTCAGTATCT 59.364 47.826 0.00 0.00 0.00 1.98
3455 9018 3.243670 GGCCCTACTAACGGTTCAGTATC 60.244 52.174 0.00 0.00 0.00 2.24
3456 9019 2.697229 GGCCCTACTAACGGTTCAGTAT 59.303 50.000 0.00 0.00 0.00 2.12
3457 9020 2.102578 GGCCCTACTAACGGTTCAGTA 58.897 52.381 0.00 3.76 0.00 2.74
3458 9021 0.900421 GGCCCTACTAACGGTTCAGT 59.100 55.000 0.00 2.76 0.00 3.41
3459 9022 1.136500 GAGGCCCTACTAACGGTTCAG 59.864 57.143 0.00 0.00 0.00 3.02
3460 9023 1.188863 GAGGCCCTACTAACGGTTCA 58.811 55.000 0.00 0.00 0.00 3.18
3461 9024 0.463204 GGAGGCCCTACTAACGGTTC 59.537 60.000 0.00 0.00 0.00 3.62
3462 9025 0.042281 AGGAGGCCCTACTAACGGTT 59.958 55.000 0.00 0.00 42.15 4.44
3463 9026 0.042281 AAGGAGGCCCTACTAACGGT 59.958 55.000 0.00 0.00 43.48 4.83
3464 9027 1.201424 AAAGGAGGCCCTACTAACGG 58.799 55.000 0.00 0.00 43.48 4.44
3465 9028 2.500504 AGAAAAGGAGGCCCTACTAACG 59.499 50.000 0.00 0.00 43.48 3.18
3466 9029 4.225492 AGAAGAAAAGGAGGCCCTACTAAC 59.775 45.833 0.00 0.00 43.48 2.34
3543 9106 2.116827 ACCTGAAAACGTGGTTGTGA 57.883 45.000 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.