Multiple sequence alignment - TraesCS1A01G093100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G093100 chr1A 100.000 4801 0 0 1 4801 85823518 85828318 0.000000e+00 8866.0
1 TraesCS1A01G093100 chr1A 83.841 984 140 12 2875 3857 85840774 85841739 0.000000e+00 918.0
2 TraesCS1A01G093100 chr1A 86.323 446 31 11 1321 1736 550704675 550705120 4.380000e-125 459.0
3 TraesCS1A01G093100 chr1A 82.378 471 47 13 1325 1766 178884855 178884392 1.260000e-100 377.0
4 TraesCS1A01G093100 chr1A 98.630 146 2 0 4656 4801 9148013 9147868 4.770000e-65 259.0
5 TraesCS1A01G093100 chr1A 98.630 146 2 0 4656 4801 155071516 155071371 4.770000e-65 259.0
6 TraesCS1A01G093100 chr1A 100.000 85 0 0 2804 2888 85826241 85826325 1.790000e-34 158.0
7 TraesCS1A01G093100 chr1A 100.000 85 0 0 2724 2808 85826321 85826405 1.790000e-34 158.0
8 TraesCS1A01G093100 chr1B 94.536 915 40 7 1 911 143058797 143057889 0.000000e+00 1404.0
9 TraesCS1A01G093100 chr1B 94.476 525 25 2 2873 3397 143057727 143057207 0.000000e+00 806.0
10 TraesCS1A01G093100 chr1B 80.968 930 152 15 2883 3811 143112232 143111327 0.000000e+00 713.0
11 TraesCS1A01G093100 chr1B 80.259 927 177 4 2875 3801 145349184 145350104 0.000000e+00 693.0
12 TraesCS1A01G093100 chr1B 93.133 466 30 1 3392 3857 143053668 143053205 0.000000e+00 682.0
13 TraesCS1A01G093100 chr1B 87.544 570 65 3 3288 3857 143041364 143040801 0.000000e+00 654.0
14 TraesCS1A01G093100 chr1B 84.807 441 35 4 1325 1736 642809935 642810372 9.610000e-112 414.0
15 TraesCS1A01G093100 chr1B 98.630 146 2 0 4656 4801 203608332 203608187 4.770000e-65 259.0
16 TraesCS1A01G093100 chr1B 90.265 113 11 0 3873 3985 143053219 143053107 1.080000e-31 148.0
17 TraesCS1A01G093100 chr1B 92.424 66 5 0 2628 2693 442965679 442965614 1.420000e-15 95.3
18 TraesCS1A01G093100 chr2B 96.940 621 17 2 4036 4655 596995296 596995915 0.000000e+00 1040.0
19 TraesCS1A01G093100 chr2B 96.217 608 20 2 4050 4655 728363399 728364005 0.000000e+00 992.0
20 TraesCS1A01G093100 chr2B 81.766 872 145 10 1762 2626 239825238 239824374 0.000000e+00 717.0
21 TraesCS1A01G093100 chr2B 85.488 441 33 5 1325 1736 513061298 513061736 9.550000e-117 431.0
22 TraesCS1A01G093100 chr2B 85.034 441 37 3 1325 1736 692909861 692909421 5.740000e-114 422.0
23 TraesCS1A01G093100 chr2B 90.265 226 20 2 1513 1736 743335502 743335727 1.310000e-75 294.0
24 TraesCS1A01G093100 chr2B 93.976 166 10 0 1324 1489 743335212 743335377 7.980000e-63 252.0
25 TraesCS1A01G093100 chr2B 81.982 222 31 2 1107 1319 239825456 239825235 3.820000e-41 180.0
26 TraesCS1A01G093100 chr2B 92.308 78 6 0 2627 2704 118587892 118587969 1.410000e-20 111.0
27 TraesCS1A01G093100 chr2B 95.238 42 2 0 4383 4424 639489946 639489905 3.100000e-07 67.6
28 TraesCS1A01G093100 chr5A 95.915 612 22 3 4044 4655 118114212 118114820 0.000000e+00 989.0
29 TraesCS1A01G093100 chr5A 98.630 146 2 0 4656 4801 472576747 472576892 4.770000e-65 259.0
30 TraesCS1A01G093100 chr5A 98.630 146 2 0 4656 4801 472578416 472578561 4.770000e-65 259.0
31 TraesCS1A01G093100 chr5A 88.462 78 9 0 2627 2704 606537599 606537522 1.420000e-15 95.3
32 TraesCS1A01G093100 chr5A 86.441 59 5 3 4028 4084 688115686 688115629 1.440000e-05 62.1
33 TraesCS1A01G093100 chr7B 94.364 621 20 6 4036 4655 640584260 640584866 0.000000e+00 939.0
34 TraesCS1A01G093100 chr7B 85.553 443 35 7 1323 1736 643743507 643743065 2.050000e-118 436.0
35 TraesCS1A01G093100 chr7B 97.015 67 2 0 2627 2693 733720665 733720599 3.930000e-21 113.0
36 TraesCS1A01G093100 chr7B 88.506 87 9 1 2619 2704 385062743 385062657 2.360000e-18 104.0
37 TraesCS1A01G093100 chr1D 84.045 984 139 9 2875 3857 89560513 89561479 0.000000e+00 931.0
38 TraesCS1A01G093100 chr1D 94.253 609 29 5 4045 4653 10834483 10833881 0.000000e+00 926.0
39 TraesCS1A01G093100 chr1D 82.481 919 141 17 2883 3795 90637513 90638417 0.000000e+00 787.0
40 TraesCS1A01G093100 chr1D 80.594 943 144 26 2883 3811 89990418 89991335 0.000000e+00 691.0
41 TraesCS1A01G093100 chr1D 80.193 934 172 8 2875 3801 90581359 90582286 0.000000e+00 688.0
42 TraesCS1A01G093100 chr1D 90.909 440 19 13 1 438 89518119 89518539 5.390000e-159 571.0
43 TraesCS1A01G093100 chr1D 94.134 358 21 0 2874 3231 89533326 89533683 3.270000e-151 545.0
44 TraesCS1A01G093100 chr1D 89.418 189 13 4 927 1109 89533143 89533330 1.040000e-56 231.0
45 TraesCS1A01G093100 chr1D 89.437 142 15 0 775 916 89532953 89533094 3.820000e-41 180.0
46 TraesCS1A01G093100 chr4D 92.962 611 34 7 4048 4658 239347347 239346746 0.000000e+00 881.0
47 TraesCS1A01G093100 chr4D 92.727 55 3 1 4045 4099 488332784 488332731 1.430000e-10 78.7
48 TraesCS1A01G093100 chr7A 88.652 423 35 3 1325 1736 692059764 692059344 1.990000e-138 503.0
49 TraesCS1A01G093100 chr7A 85.714 441 33 4 1325 1736 692127280 692126841 5.700000e-119 438.0
50 TraesCS1A01G093100 chr7A 85.488 441 35 3 1325 1736 717830219 717830659 2.650000e-117 433.0
51 TraesCS1A01G093100 chr7A 84.580 441 39 9 1325 1736 135521745 135522185 1.240000e-110 411.0
52 TraesCS1A01G093100 chr7A 98.639 147 2 0 4655 4801 20280159 20280013 1.330000e-65 261.0
53 TraesCS1A01G093100 chr6A 85.778 450 35 6 1316 1736 108088282 108088731 2.640000e-122 449.0
54 TraesCS1A01G093100 chr6A 85.488 441 35 6 1325 1736 102348291 102348731 2.650000e-117 433.0
55 TraesCS1A01G093100 chr3B 85.973 442 33 6 1324 1736 637615670 637616111 3.410000e-121 446.0
56 TraesCS1A01G093100 chr3B 85.649 439 34 5 1324 1733 62415593 62416031 7.380000e-118 435.0
57 TraesCS1A01G093100 chr6B 85.360 444 36 3 1322 1736 579067297 579066854 2.650000e-117 433.0
58 TraesCS1A01G093100 chr6B 95.385 65 2 1 2810 2873 151647549 151647485 8.500000e-18 102.0
59 TraesCS1A01G093100 chr6B 95.385 65 2 1 2730 2793 151647549 151647485 8.500000e-18 102.0
60 TraesCS1A01G093100 chrUn 83.220 441 45 10 1325 1736 197809562 197809122 1.260000e-100 377.0
61 TraesCS1A01G093100 chrUn 83.220 441 45 10 1325 1736 377679398 377679838 1.260000e-100 377.0
62 TraesCS1A01G093100 chrUn 83.144 439 45 10 1325 1734 61911174 61911612 1.630000e-99 374.0
63 TraesCS1A01G093100 chrUn 82.766 441 47 10 1325 1736 206530822 206531262 2.730000e-97 366.0
64 TraesCS1A01G093100 chrUn 82.766 441 47 10 1325 1736 208956713 208957153 2.730000e-97 366.0
65 TraesCS1A01G093100 chrUn 82.766 441 47 10 1325 1736 379273891 379274331 2.730000e-97 366.0
66 TraesCS1A01G093100 chrUn 87.500 152 19 0 1325 1476 377247766 377247615 4.940000e-40 176.0
67 TraesCS1A01G093100 chrUn 82.759 116 9 2 1488 1592 226272081 226272196 5.120000e-15 93.5
68 TraesCS1A01G093100 chr2A 91.593 226 15 3 1513 1736 675094219 675093996 4.670000e-80 309.0
69 TraesCS1A01G093100 chr4A 98.630 146 2 0 4656 4801 89420262 89420117 4.770000e-65 259.0
70 TraesCS1A01G093100 chr4A 98.000 150 2 1 4652 4801 89421899 89421751 4.770000e-65 259.0
71 TraesCS1A01G093100 chr4A 98.630 146 2 0 4656 4801 412301177 412301032 4.770000e-65 259.0
72 TraesCS1A01G093100 chr4A 91.026 78 7 0 2627 2704 702043508 702043585 6.570000e-19 106.0
73 TraesCS1A01G093100 chr7D 90.244 82 8 0 2623 2704 413249458 413249377 1.830000e-19 108.0
74 TraesCS1A01G093100 chr7D 91.026 78 7 0 2627 2704 53450595 53450672 6.570000e-19 106.0
75 TraesCS1A01G093100 chr2D 89.873 79 8 0 2626 2704 591311110 591311032 8.500000e-18 102.0
76 TraesCS1A01G093100 chr5B 90.476 63 5 1 4045 4107 552675182 552675243 1.110000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G093100 chr1A 85823518 85828318 4800 False 3060.666667 8866 100.000000 1 4801 3 chr1A.!!$F3 4800
1 TraesCS1A01G093100 chr1A 85840774 85841739 965 False 918.000000 918 83.841000 2875 3857 1 chr1A.!!$F1 982
2 TraesCS1A01G093100 chr1B 143053107 143058797 5690 True 760.000000 1404 93.102500 1 3985 4 chr1B.!!$R5 3984
3 TraesCS1A01G093100 chr1B 143111327 143112232 905 True 713.000000 713 80.968000 2883 3811 1 chr1B.!!$R2 928
4 TraesCS1A01G093100 chr1B 145349184 145350104 920 False 693.000000 693 80.259000 2875 3801 1 chr1B.!!$F1 926
5 TraesCS1A01G093100 chr1B 143040801 143041364 563 True 654.000000 654 87.544000 3288 3857 1 chr1B.!!$R1 569
6 TraesCS1A01G093100 chr2B 596995296 596995915 619 False 1040.000000 1040 96.940000 4036 4655 1 chr2B.!!$F3 619
7 TraesCS1A01G093100 chr2B 728363399 728364005 606 False 992.000000 992 96.217000 4050 4655 1 chr2B.!!$F4 605
8 TraesCS1A01G093100 chr2B 239824374 239825456 1082 True 448.500000 717 81.874000 1107 2626 2 chr2B.!!$R3 1519
9 TraesCS1A01G093100 chr2B 743335212 743335727 515 False 273.000000 294 92.120500 1324 1736 2 chr2B.!!$F5 412
10 TraesCS1A01G093100 chr5A 118114212 118114820 608 False 989.000000 989 95.915000 4044 4655 1 chr5A.!!$F1 611
11 TraesCS1A01G093100 chr5A 472576747 472578561 1814 False 259.000000 259 98.630000 4656 4801 2 chr5A.!!$F2 145
12 TraesCS1A01G093100 chr7B 640584260 640584866 606 False 939.000000 939 94.364000 4036 4655 1 chr7B.!!$F1 619
13 TraesCS1A01G093100 chr1D 89560513 89561479 966 False 931.000000 931 84.045000 2875 3857 1 chr1D.!!$F2 982
14 TraesCS1A01G093100 chr1D 10833881 10834483 602 True 926.000000 926 94.253000 4045 4653 1 chr1D.!!$R1 608
15 TraesCS1A01G093100 chr1D 90637513 90638417 904 False 787.000000 787 82.481000 2883 3795 1 chr1D.!!$F5 912
16 TraesCS1A01G093100 chr1D 89990418 89991335 917 False 691.000000 691 80.594000 2883 3811 1 chr1D.!!$F3 928
17 TraesCS1A01G093100 chr1D 90581359 90582286 927 False 688.000000 688 80.193000 2875 3801 1 chr1D.!!$F4 926
18 TraesCS1A01G093100 chr1D 89532953 89533683 730 False 318.666667 545 90.996333 775 3231 3 chr1D.!!$F6 2456
19 TraesCS1A01G093100 chr4D 239346746 239347347 601 True 881.000000 881 92.962000 4048 4658 1 chr4D.!!$R1 610
20 TraesCS1A01G093100 chr4A 89420117 89421899 1782 True 259.000000 259 98.315000 4652 4801 2 chr4A.!!$R2 149

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
917 920 0.320374 TTGCTCTTGTTCGGGTCGAT 59.680 50.0 0.0 0.0 35.23 3.59 F
1962 2156 0.036164 TAACAGCAGGCACCAACGAT 59.964 50.0 0.0 0.0 0.00 3.73 F
2715 2914 0.037605 CACGGACGAGGGTTAGCTTT 60.038 55.0 0.0 0.0 0.00 3.51 F
2716 2915 0.683412 ACGGACGAGGGTTAGCTTTT 59.317 50.0 0.0 0.0 0.00 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2203 2397 0.036952 CAGAAGAGGTGCACCGATGT 60.037 55.000 29.68 16.49 42.08 3.06 R
3684 7455 0.036732 TCATCCGCCACAAAGAAGCT 59.963 50.000 0.00 0.00 0.00 3.74 R
3685 7456 0.881118 TTCATCCGCCACAAAGAAGC 59.119 50.000 0.00 0.00 0.00 3.86 R
4655 8446 1.473257 CCTTCTAGCAGCGCCATAACA 60.473 52.381 2.29 0.00 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
237 238 2.525105 AGAAGGGAGGAGAGACAGTC 57.475 55.000 0.00 0.00 0.00 3.51
241 242 1.284785 AGGGAGGAGAGACAGTCAGAG 59.715 57.143 2.66 0.00 0.00 3.35
247 248 2.092646 GGAGAGACAGTCAGAGAGGCTA 60.093 54.545 2.66 0.00 0.00 3.93
346 347 7.277981 AGTTTCTTGTATCTCGTCGCAAAATAT 59.722 33.333 0.00 0.00 0.00 1.28
383 384 7.955502 TGTGTATTACTGCTGTTTAATACGTG 58.044 34.615 17.50 0.00 41.27 4.49
466 467 7.412455 GCTCAAATGTTCGGTTTTTCTTTTTCA 60.412 33.333 0.00 0.00 0.00 2.69
536 537 1.935933 ATAAACCAGATCGTCCACGC 58.064 50.000 0.00 0.00 39.60 5.34
582 583 7.012799 GTCCCAGATAGAATTGGAATTGAGTTC 59.987 40.741 0.00 0.00 36.55 3.01
662 663 3.134081 TCTCAGATCGATTAAACCCCACC 59.866 47.826 0.00 0.00 0.00 4.61
671 672 4.610333 GATTAAACCCCACCTGGAAATCT 58.390 43.478 0.00 0.00 37.39 2.40
742 743 4.406173 CCACGAGAGCACGCGACT 62.406 66.667 15.93 10.13 41.48 4.18
905 908 1.322442 GAGTGCCCTGTTTTGCTCTT 58.678 50.000 0.00 0.00 31.99 2.85
907 910 0.746659 GTGCCCTGTTTTGCTCTTGT 59.253 50.000 0.00 0.00 0.00 3.16
908 911 1.136891 GTGCCCTGTTTTGCTCTTGTT 59.863 47.619 0.00 0.00 0.00 2.83
909 912 1.408702 TGCCCTGTTTTGCTCTTGTTC 59.591 47.619 0.00 0.00 0.00 3.18
912 915 1.001378 CCTGTTTTGCTCTTGTTCGGG 60.001 52.381 0.00 0.00 0.00 5.14
913 916 1.676006 CTGTTTTGCTCTTGTTCGGGT 59.324 47.619 0.00 0.00 0.00 5.28
915 918 0.941542 TTTTGCTCTTGTTCGGGTCG 59.058 50.000 0.00 0.00 0.00 4.79
917 920 0.320374 TTGCTCTTGTTCGGGTCGAT 59.680 50.000 0.00 0.00 35.23 3.59
918 921 0.320374 TGCTCTTGTTCGGGTCGATT 59.680 50.000 0.00 0.00 35.23 3.34
920 923 1.804748 GCTCTTGTTCGGGTCGATTTT 59.195 47.619 0.00 0.00 35.23 1.82
922 925 2.806244 CTCTTGTTCGGGTCGATTTTGT 59.194 45.455 0.00 0.00 35.23 2.83
923 926 2.803956 TCTTGTTCGGGTCGATTTTGTC 59.196 45.455 0.00 0.00 35.23 3.18
924 927 2.536761 TGTTCGGGTCGATTTTGTCT 57.463 45.000 0.00 0.00 35.23 3.41
925 928 2.139917 TGTTCGGGTCGATTTTGTCTG 58.860 47.619 0.00 0.00 35.23 3.51
926 929 2.224090 TGTTCGGGTCGATTTTGTCTGA 60.224 45.455 0.00 0.00 35.23 3.27
927 930 2.803956 GTTCGGGTCGATTTTGTCTGAA 59.196 45.455 0.00 0.00 35.23 3.02
928 931 3.328382 TCGGGTCGATTTTGTCTGAAT 57.672 42.857 0.00 0.00 0.00 2.57
929 932 3.670625 TCGGGTCGATTTTGTCTGAATT 58.329 40.909 0.00 0.00 0.00 2.17
930 933 4.069304 TCGGGTCGATTTTGTCTGAATTT 58.931 39.130 0.00 0.00 0.00 1.82
931 934 4.153475 TCGGGTCGATTTTGTCTGAATTTC 59.847 41.667 0.00 0.00 0.00 2.17
932 935 4.154195 CGGGTCGATTTTGTCTGAATTTCT 59.846 41.667 0.00 0.00 0.00 2.52
933 936 5.334879 CGGGTCGATTTTGTCTGAATTTCTT 60.335 40.000 0.00 0.00 0.00 2.52
935 938 6.072452 GGGTCGATTTTGTCTGAATTTCTTCT 60.072 38.462 0.00 0.00 32.29 2.85
936 939 6.798959 GGTCGATTTTGTCTGAATTTCTTCTG 59.201 38.462 0.00 0.00 32.29 3.02
972 1048 1.808343 GGGTGGTGACAATCGTTTACC 59.192 52.381 0.00 0.00 46.06 2.85
975 1051 1.343789 TGGTGACAATCGTTTACCGGA 59.656 47.619 9.46 0.00 36.15 5.14
987 1067 0.390124 TTACCGGAGCGTTGTTCAGT 59.610 50.000 9.46 0.00 0.00 3.41
1075 1155 5.516090 TCAAAGTTGATTACGAACAAAGCC 58.484 37.500 0.00 0.00 31.01 4.35
1142 1222 1.753073 GTTTGGGCATCCTGAATCTGG 59.247 52.381 0.00 0.00 0.00 3.86
1144 1224 0.548031 TGGGCATCCTGAATCTGGTC 59.452 55.000 6.07 0.00 0.00 4.02
1147 1227 2.295885 GGCATCCTGAATCTGGTCAAG 58.704 52.381 6.07 0.00 0.00 3.02
1153 1233 2.746362 CCTGAATCTGGTCAAGTTCAGC 59.254 50.000 14.38 0.00 39.81 4.26
1155 1235 1.734465 GAATCTGGTCAAGTTCAGCCG 59.266 52.381 0.00 0.00 0.00 5.52
1159 1239 1.598130 GGTCAAGTTCAGCCGTGCT 60.598 57.895 0.00 0.00 40.77 4.40
1163 1243 0.514691 CAAGTTCAGCCGTGCTCTTC 59.485 55.000 0.00 0.00 36.40 2.87
1175 1255 0.321298 TGCTCTTCGGTTAAGGTGGC 60.321 55.000 0.00 0.00 35.75 5.01
1177 1257 1.610886 GCTCTTCGGTTAAGGTGGCTT 60.611 52.381 0.00 0.00 35.75 4.35
1207 1287 3.114616 CAGCAACCTCGCAGTCCG 61.115 66.667 0.00 0.00 38.61 4.79
1241 1329 2.489329 CTGCGATGGAAAAGACCACAAT 59.511 45.455 0.00 0.00 43.03 2.71
1261 1349 1.668751 TCTGTTCAACCAAGCAACGAC 59.331 47.619 0.00 0.00 0.00 4.34
1284 1373 1.815421 ACAATGGCGATGGAGCGAC 60.815 57.895 0.00 0.00 40.45 5.19
1311 1400 0.895100 TTCTGGCACAATCACTGGCC 60.895 55.000 0.00 0.00 38.70 5.36
1399 1488 2.364324 CTCGGAATAGGATTCGGGAACA 59.636 50.000 6.85 0.00 0.00 3.18
1438 1527 4.747108 CGATTTGATGAAGATTAGGCGTCT 59.253 41.667 0.00 0.00 0.00 4.18
1465 1554 1.902508 TCTGCTCCTCGATTCAGGTTT 59.097 47.619 0.00 0.00 34.76 3.27
1466 1555 3.096852 TCTGCTCCTCGATTCAGGTTTA 58.903 45.455 0.00 0.00 34.76 2.01
1480 1569 2.420022 CAGGTTTAAGGATCCAACAGCG 59.580 50.000 15.82 0.00 0.00 5.18
1517 1697 4.625607 TTCTTTTCTCAAGGACTCCTCC 57.374 45.455 0.00 0.00 36.71 4.30
1531 1721 5.104259 GACTCCTCCAGTCCATTAATTGT 57.896 43.478 0.00 0.00 45.47 2.71
1536 1726 5.729229 TCCTCCAGTCCATTAATTGTAAGGA 59.271 40.000 0.00 0.00 0.00 3.36
1559 1749 7.564660 AGGAATCCATTAACAATAAGGAATGCA 59.435 33.333 0.61 0.00 31.17 3.96
1560 1750 8.370182 GGAATCCATTAACAATAAGGAATGCAT 58.630 33.333 0.00 0.00 31.17 3.96
1577 1768 2.745100 TCCGTCAGGGAGTCGTCG 60.745 66.667 0.00 0.00 40.94 5.12
1582 1773 0.597072 GTCAGGGAGTCGTCGTTCTT 59.403 55.000 0.00 0.00 0.00 2.52
1586 1777 0.733223 GGGAGTCGTCGTTCTTCAGC 60.733 60.000 0.00 0.00 0.00 4.26
1630 1821 2.381911 ACCGTACCAGGTTCATCGTAT 58.618 47.619 0.00 0.00 43.00 3.06
1723 1915 2.045561 TTTTCAGCCACCGACTTTCA 57.954 45.000 0.00 0.00 0.00 2.69
1729 1921 0.322546 GCCACCGACTTTCATCCCTT 60.323 55.000 0.00 0.00 0.00 3.95
1736 1928 2.552155 CGACTTTCATCCCTTGTTCCCA 60.552 50.000 0.00 0.00 0.00 4.37
1737 1929 2.820197 GACTTTCATCCCTTGTTCCCAC 59.180 50.000 0.00 0.00 0.00 4.61
1738 1930 2.171003 CTTTCATCCCTTGTTCCCACC 58.829 52.381 0.00 0.00 0.00 4.61
1739 1931 0.037590 TTCATCCCTTGTTCCCACCG 59.962 55.000 0.00 0.00 0.00 4.94
1740 1932 1.131303 TCATCCCTTGTTCCCACCGT 61.131 55.000 0.00 0.00 0.00 4.83
1741 1933 0.616371 CATCCCTTGTTCCCACCGTA 59.384 55.000 0.00 0.00 0.00 4.02
1742 1934 0.909623 ATCCCTTGTTCCCACCGTAG 59.090 55.000 0.00 0.00 0.00 3.51
1743 1935 1.376812 CCCTTGTTCCCACCGTAGC 60.377 63.158 0.00 0.00 0.00 3.58
1744 1936 1.373435 CCTTGTTCCCACCGTAGCA 59.627 57.895 0.00 0.00 0.00 3.49
1745 1937 0.250553 CCTTGTTCCCACCGTAGCAA 60.251 55.000 0.00 0.00 0.00 3.91
1746 1938 1.600023 CTTGTTCCCACCGTAGCAAA 58.400 50.000 0.00 0.00 0.00 3.68
1747 1939 1.950909 CTTGTTCCCACCGTAGCAAAA 59.049 47.619 0.00 0.00 0.00 2.44
1748 1940 2.054232 TGTTCCCACCGTAGCAAAAA 57.946 45.000 0.00 0.00 0.00 1.94
1749 1941 1.677052 TGTTCCCACCGTAGCAAAAAC 59.323 47.619 0.00 0.00 0.00 2.43
1750 1942 1.677052 GTTCCCACCGTAGCAAAAACA 59.323 47.619 0.00 0.00 0.00 2.83
1751 1943 2.279935 TCCCACCGTAGCAAAAACAT 57.720 45.000 0.00 0.00 0.00 2.71
1752 1944 1.883275 TCCCACCGTAGCAAAAACATG 59.117 47.619 0.00 0.00 0.00 3.21
1753 1945 1.067915 CCCACCGTAGCAAAAACATGG 60.068 52.381 0.00 0.00 0.00 3.66
1754 1946 1.668628 CCACCGTAGCAAAAACATGGC 60.669 52.381 0.00 0.00 0.00 4.40
1755 1947 1.000827 CACCGTAGCAAAAACATGGCA 60.001 47.619 0.00 0.00 0.00 4.92
1756 1948 1.683917 ACCGTAGCAAAAACATGGCAA 59.316 42.857 0.00 0.00 0.00 4.52
1757 1949 2.058057 CCGTAGCAAAAACATGGCAAC 58.942 47.619 0.00 0.00 0.00 4.17
1758 1950 2.288152 CCGTAGCAAAAACATGGCAACT 60.288 45.455 0.00 0.00 37.61 3.16
1759 1951 3.057876 CCGTAGCAAAAACATGGCAACTA 60.058 43.478 0.00 0.00 37.61 2.24
1760 1952 4.380444 CCGTAGCAAAAACATGGCAACTAT 60.380 41.667 0.00 0.00 37.61 2.12
1765 1957 4.798924 GCAAAAACATGGCAACTATGGTCA 60.799 41.667 0.00 0.00 37.61 4.02
1770 1962 1.496444 TGGCAACTATGGTCAGGCCA 61.496 55.000 15.20 15.20 45.91 5.36
1797 1989 1.068954 CAAGCTTTTCCGGCTCTGTTC 60.069 52.381 0.00 0.00 39.30 3.18
1800 1992 2.227968 CTTTTCCGGCTCTGTTCGCG 62.228 60.000 0.00 0.00 0.00 5.87
1817 2009 4.404654 GCACTCCCGCCGCAAAAG 62.405 66.667 0.00 0.00 0.00 2.27
1818 2010 4.404654 CACTCCCGCCGCAAAAGC 62.405 66.667 0.00 0.00 0.00 3.51
1824 2016 3.357079 CGCCGCAAAAGCAGGTCT 61.357 61.111 0.00 0.00 0.00 3.85
1829 2021 1.006922 GCAAAAGCAGGTCTGTGGC 60.007 57.895 0.00 0.00 0.00 5.01
1833 2025 3.247648 AGCAGGTCTGTGGCTGCT 61.248 61.111 0.00 0.00 46.77 4.24
1842 2034 2.031616 GTGGCTGCTGCTCTCACA 59.968 61.111 15.64 1.44 39.59 3.58
1847 2039 1.146957 GCTGCTGCTCTCACAGATCG 61.147 60.000 8.53 0.00 40.25 3.69
1863 2055 0.252197 ATCGCACCTGGGTAAAGGAC 59.748 55.000 0.00 0.00 40.02 3.85
1875 2067 2.633488 GTAAAGGACCTCAGACATGGC 58.367 52.381 0.00 0.00 0.00 4.40
1878 2070 0.689080 AGGACCTCAGACATGGCGAT 60.689 55.000 0.00 0.00 0.00 4.58
1879 2071 0.179000 GGACCTCAGACATGGCGATT 59.821 55.000 0.00 0.00 0.00 3.34
1882 2074 0.107508 CCTCAGACATGGCGATTGGT 60.108 55.000 0.00 0.00 0.00 3.67
1884 2076 0.904649 TCAGACATGGCGATTGGTCT 59.095 50.000 0.00 0.00 41.04 3.85
1894 2086 1.191944 CGATTGGTCTGTGATCGTCG 58.808 55.000 0.00 0.00 38.21 5.12
1908 2100 1.137825 CGTCGCAGAGTTCCTCTCC 59.862 63.158 0.00 0.00 43.71 3.71
1918 2112 3.239627 TTCCTCTCCCTCTGGCGGT 62.240 63.158 0.00 0.00 0.00 5.68
1923 2117 2.284331 TCCCTCTGGCGGTTGCTA 60.284 61.111 0.00 0.00 42.25 3.49
1939 2133 0.521291 GCTAGCGGTGCAAAATGTGA 59.479 50.000 0.00 0.00 0.00 3.58
1940 2134 1.729149 GCTAGCGGTGCAAAATGTGAC 60.729 52.381 0.00 0.00 0.00 3.67
1941 2135 1.806542 CTAGCGGTGCAAAATGTGACT 59.193 47.619 0.00 0.00 0.00 3.41
1953 2147 2.393271 ATGTGACTCTAACAGCAGGC 57.607 50.000 0.00 0.00 0.00 4.85
1955 2149 1.433534 GTGACTCTAACAGCAGGCAC 58.566 55.000 0.00 0.00 41.44 5.01
1959 2153 1.160137 CTCTAACAGCAGGCACCAAC 58.840 55.000 0.00 0.00 0.00 3.77
1962 2156 0.036164 TAACAGCAGGCACCAACGAT 59.964 50.000 0.00 0.00 0.00 3.73
1963 2157 0.823356 AACAGCAGGCACCAACGATT 60.823 50.000 0.00 0.00 0.00 3.34
1964 2158 1.237285 ACAGCAGGCACCAACGATTC 61.237 55.000 0.00 0.00 0.00 2.52
1968 2162 0.652592 CAGGCACCAACGATTCGATC 59.347 55.000 13.95 0.00 0.00 3.69
1971 2165 0.373716 GCACCAACGATTCGATCACC 59.626 55.000 13.95 0.00 0.00 4.02
1979 2173 1.576356 GATTCGATCACCTGGACAGC 58.424 55.000 0.00 0.00 0.00 4.40
1984 2178 3.362399 ATCACCTGGACAGCGAGCG 62.362 63.158 0.00 0.00 0.00 5.03
2005 2199 1.817447 GCTCAGGTTAGTACTCGGTGT 59.183 52.381 0.00 0.00 0.00 4.16
2013 2207 2.675423 TACTCGGTGTGCTCGGCT 60.675 61.111 0.00 0.00 0.00 5.52
2016 2210 1.805945 CTCGGTGTGCTCGGCTTAC 60.806 63.158 0.00 0.00 0.00 2.34
2018 2212 2.094659 CGGTGTGCTCGGCTTACAG 61.095 63.158 0.00 0.00 0.00 2.74
2031 2225 2.415090 GGCTTACAGCATGCAGTTTCAG 60.415 50.000 21.46 14.94 44.75 3.02
2032 2226 2.415090 GCTTACAGCATGCAGTTTCAGG 60.415 50.000 21.46 5.20 42.53 3.86
2033 2227 2.857186 TACAGCATGCAGTTTCAGGA 57.143 45.000 21.46 0.00 42.53 3.86
2034 2228 1.531423 ACAGCATGCAGTTTCAGGAG 58.469 50.000 21.98 0.00 42.53 3.69
2037 2231 0.964358 GCATGCAGTTTCAGGAGCCT 60.964 55.000 14.21 0.00 0.00 4.58
2042 2236 2.158682 TGCAGTTTCAGGAGCCTACAAA 60.159 45.455 0.00 0.00 0.00 2.83
2044 2238 3.317993 GCAGTTTCAGGAGCCTACAAAAA 59.682 43.478 0.00 0.00 0.00 1.94
2067 2261 6.785337 AATGATCTTTGCTCCATCATTTGA 57.215 33.333 0.00 0.00 42.17 2.69
2082 2276 1.330655 TTTGAAAACCTTGGGCGCCA 61.331 50.000 30.85 12.04 0.00 5.69
2083 2277 1.330655 TTGAAAACCTTGGGCGCCAA 61.331 50.000 30.85 16.59 41.69 4.52
2102 2296 5.353678 CGCCAAGAAAGATGAAGATCTTCTT 59.646 40.000 30.45 25.61 46.45 2.52
2103 2297 6.456718 CGCCAAGAAAGATGAAGATCTTCTTC 60.457 42.308 30.38 30.38 46.45 2.87
2118 2312 2.105006 TCTTCTGGCTGTTGCATCTC 57.895 50.000 0.00 0.00 41.91 2.75
2132 2326 0.668535 CATCTCGATCGCCTGTGGTA 59.331 55.000 11.09 0.00 0.00 3.25
2133 2327 1.270826 CATCTCGATCGCCTGTGGTAT 59.729 52.381 11.09 0.00 0.00 2.73
2140 2334 2.502213 TCGCCTGTGGTATAATGACG 57.498 50.000 0.00 0.00 0.00 4.35
2145 2339 2.158813 CCTGTGGTATAATGACGGGCTT 60.159 50.000 0.00 0.00 29.44 4.35
2148 2342 3.131396 GTGGTATAATGACGGGCTTCAG 58.869 50.000 0.00 0.00 0.00 3.02
2151 2345 0.178068 ATAATGACGGGCTTCAGCGT 59.822 50.000 0.00 0.00 43.26 5.07
2156 2350 4.116328 CGGGCTTCAGCGTCGAGA 62.116 66.667 0.00 0.00 43.26 4.04
2157 2351 2.496817 GGGCTTCAGCGTCGAGAT 59.503 61.111 0.00 0.00 43.26 2.75
2169 2363 1.134818 CGTCGAGATTGGGTCAATGGA 60.135 52.381 0.00 0.00 33.90 3.41
2175 2369 5.997746 TCGAGATTGGGTCAATGGATATTTC 59.002 40.000 0.00 0.00 33.90 2.17
2177 2371 7.016170 TCGAGATTGGGTCAATGGATATTTCTA 59.984 37.037 0.00 0.00 33.90 2.10
2193 2387 3.371097 CTACCCGCTGTGCATCCGT 62.371 63.158 0.00 0.00 0.00 4.69
2197 2391 3.490759 CGCTGTGCATCCGTCACC 61.491 66.667 0.00 0.00 33.71 4.02
2199 2393 1.218047 GCTGTGCATCCGTCACCTA 59.782 57.895 0.00 0.00 33.71 3.08
2200 2394 0.391130 GCTGTGCATCCGTCACCTAA 60.391 55.000 0.00 0.00 33.71 2.69
2203 2397 2.811431 CTGTGCATCCGTCACCTAAAAA 59.189 45.455 0.00 0.00 33.71 1.94
2214 2408 2.550606 TCACCTAAAAACATCGGTGCAC 59.449 45.455 8.80 8.80 44.99 4.57
2220 2414 1.523758 AAACATCGGTGCACCTCTTC 58.476 50.000 32.28 7.16 0.00 2.87
2225 2419 2.883828 CGGTGCACCTCTTCTGGGT 61.884 63.158 32.28 0.00 37.59 4.51
2230 2424 1.679898 CACCTCTTCTGGGTGTCCC 59.320 63.158 4.87 0.00 46.42 4.46
2250 2446 0.106819 CTGGCCCTGGAGATTTGGAG 60.107 60.000 0.00 0.00 0.00 3.86
2257 2453 1.283029 CTGGAGATTTGGAGGAAGGCA 59.717 52.381 0.00 0.00 0.00 4.75
2260 2456 0.393537 AGATTTGGAGGAAGGCAGCG 60.394 55.000 0.00 0.00 0.00 5.18
2272 2468 2.486966 GCAGCGACTTGGAATGGC 59.513 61.111 0.00 0.00 0.00 4.40
2275 2471 2.042831 AGCGACTTGGAATGGCTGC 61.043 57.895 0.00 0.00 31.74 5.25
2278 2474 1.675641 GACTTGGAATGGCTGCGGT 60.676 57.895 0.00 0.00 0.00 5.68
2281 2478 1.372087 CTTGGAATGGCTGCGGTCTC 61.372 60.000 0.00 0.00 0.00 3.36
2286 2483 0.674895 AATGGCTGCGGTCTCTGAAC 60.675 55.000 0.00 0.00 0.00 3.18
2289 2486 2.266055 CTGCGGTCTCTGAACCCC 59.734 66.667 4.25 0.00 35.79 4.95
2295 2492 1.545706 GGTCTCTGAACCCCGCTCTT 61.546 60.000 0.00 0.00 32.82 2.85
2331 2528 0.595095 GCTCAACCCAAAGAGTGCAG 59.405 55.000 0.00 0.00 34.39 4.41
2349 2546 3.795623 CAGCTATGCCTGCAGAATTTT 57.204 42.857 17.39 0.00 0.00 1.82
2351 2548 2.159142 AGCTATGCCTGCAGAATTTTGC 60.159 45.455 17.39 13.79 44.33 3.68
2364 2561 3.803778 AGAATTTTGCAAACAAGAAGGCG 59.196 39.130 12.39 0.00 37.04 5.52
2365 2562 2.949451 TTTTGCAAACAAGAAGGCGA 57.051 40.000 12.39 0.00 37.04 5.54
2374 2571 0.801251 CAAGAAGGCGAGAAAGGCTG 59.199 55.000 0.00 0.00 46.87 4.85
2415 2612 3.010472 TCATCTGCTGGGAAATTTGGAGA 59.990 43.478 0.00 0.00 0.00 3.71
2416 2613 3.524095 TCTGCTGGGAAATTTGGAGAA 57.476 42.857 0.00 0.00 0.00 2.87
2427 2624 5.416013 GGAAATTTGGAGAAAGAGGAACGAT 59.584 40.000 0.00 0.00 0.00 3.73
2436 2633 6.089249 AGAAAGAGGAACGATTGCATTTTT 57.911 33.333 0.00 0.00 0.00 1.94
2441 2638 7.214467 AGAGGAACGATTGCATTTTTAAAGA 57.786 32.000 0.00 0.00 0.00 2.52
2468 2665 1.300156 CATCCGCGGACGATGTCAT 60.300 57.895 33.75 9.32 43.93 3.06
2469 2666 0.875908 CATCCGCGGACGATGTCATT 60.876 55.000 33.75 8.42 43.93 2.57
2471 2668 0.248743 TCCGCGGACGATGTCATTAC 60.249 55.000 27.28 0.00 43.93 1.89
2476 2673 3.377439 GCGGACGATGTCATTACATGTA 58.623 45.455 0.08 0.08 46.49 2.29
2478 2675 4.090066 GCGGACGATGTCATTACATGTATC 59.910 45.833 6.36 0.05 46.49 2.24
2483 2680 7.011016 GGACGATGTCATTACATGTATCACAAA 59.989 37.037 6.36 0.00 46.49 2.83
2485 2682 8.726068 ACGATGTCATTACATGTATCACAAAAA 58.274 29.630 6.36 0.00 46.49 1.94
2486 2683 9.213819 CGATGTCATTACATGTATCACAAAAAG 57.786 33.333 6.36 1.06 46.49 2.27
2499 2696 6.566197 ATCACAAAAAGTTTAGAGCTCTGG 57.434 37.500 26.78 6.57 0.00 3.86
2501 2698 6.299141 TCACAAAAAGTTTAGAGCTCTGGAT 58.701 36.000 26.78 6.62 0.00 3.41
2517 2715 4.865905 TCTGGATTATTGCAGGGCTAAAA 58.134 39.130 6.33 0.00 41.34 1.52
2519 2717 4.609301 TGGATTATTGCAGGGCTAAAAGT 58.391 39.130 0.00 0.00 0.00 2.66
2534 2732 5.405331 CTAAAAGTTTAGCGCACCCTATC 57.595 43.478 11.47 0.00 34.37 2.08
2535 2733 3.629142 AAAGTTTAGCGCACCCTATCT 57.371 42.857 11.47 0.00 0.00 1.98
2536 2734 4.748277 AAAGTTTAGCGCACCCTATCTA 57.252 40.909 11.47 0.00 0.00 1.98
2538 2736 3.297736 AGTTTAGCGCACCCTATCTAGT 58.702 45.455 11.47 0.00 0.00 2.57
2543 2741 0.178958 CGCACCCTATCTAGTCCCCT 60.179 60.000 0.00 0.00 0.00 4.79
2545 2743 1.972075 GCACCCTATCTAGTCCCCTTC 59.028 57.143 0.00 0.00 0.00 3.46
2566 2764 5.104259 TCTGGGAGAGATTAGCCTTTTTC 57.896 43.478 0.00 0.00 0.00 2.29
2567 2765 4.785376 TCTGGGAGAGATTAGCCTTTTTCT 59.215 41.667 0.00 0.00 0.00 2.52
2568 2766 5.104259 TGGGAGAGATTAGCCTTTTTCTC 57.896 43.478 0.00 0.00 35.84 2.87
2569 2767 4.785376 TGGGAGAGATTAGCCTTTTTCTCT 59.215 41.667 1.15 1.15 45.73 3.10
2575 2773 8.334263 AGAGATTAGCCTTTTTCTCTCTTTTG 57.666 34.615 0.00 0.00 40.65 2.44
2576 2774 6.918626 AGATTAGCCTTTTTCTCTCTTTTGC 58.081 36.000 0.00 0.00 0.00 3.68
2577 2775 6.718912 AGATTAGCCTTTTTCTCTCTTTTGCT 59.281 34.615 0.00 0.00 0.00 3.91
2578 2776 6.715347 TTAGCCTTTTTCTCTCTTTTGCTT 57.285 33.333 0.00 0.00 0.00 3.91
2588 2786 1.198637 CTCTTTTGCTTCTTCGGGCAG 59.801 52.381 0.00 0.00 39.68 4.85
2596 2794 3.130160 CTTCGGGCAGGCTCTTGC 61.130 66.667 0.00 0.00 43.34 4.01
2626 2825 8.778358 AGAGCTCTTCTGTATTTGTTTTAACTG 58.222 33.333 11.45 0.00 33.93 3.16
2627 2826 8.677148 AGCTCTTCTGTATTTGTTTTAACTGA 57.323 30.769 0.00 0.00 0.00 3.41
2628 2827 8.778358 AGCTCTTCTGTATTTGTTTTAACTGAG 58.222 33.333 0.00 0.00 0.00 3.35
2629 2828 8.017946 GCTCTTCTGTATTTGTTTTAACTGAGG 58.982 37.037 0.00 0.00 0.00 3.86
2630 2829 9.273016 CTCTTCTGTATTTGTTTTAACTGAGGA 57.727 33.333 0.00 0.00 0.00 3.71
2631 2830 9.052759 TCTTCTGTATTTGTTTTAACTGAGGAC 57.947 33.333 0.00 0.00 0.00 3.85
2632 2831 7.416154 TCTGTATTTGTTTTAACTGAGGACG 57.584 36.000 0.00 0.00 0.00 4.79
2633 2832 6.425721 TCTGTATTTGTTTTAACTGAGGACGG 59.574 38.462 0.00 0.00 0.00 4.79
2634 2833 5.470777 TGTATTTGTTTTAACTGAGGACGGG 59.529 40.000 0.00 0.00 0.00 5.28
2635 2834 2.554370 TGTTTTAACTGAGGACGGGG 57.446 50.000 0.00 0.00 0.00 5.73
2636 2835 1.162698 GTTTTAACTGAGGACGGGGC 58.837 55.000 0.00 0.00 0.00 5.80
2637 2836 0.320946 TTTTAACTGAGGACGGGGCG 60.321 55.000 0.00 0.00 0.00 6.13
2638 2837 1.474332 TTTAACTGAGGACGGGGCGT 61.474 55.000 0.00 0.00 45.10 5.68
2659 2858 4.974721 CCCGTTGGTTGGGCAGCT 62.975 66.667 0.00 0.00 40.47 4.24
2660 2859 3.673484 CCGTTGGTTGGGCAGCTG 61.673 66.667 10.11 10.11 0.00 4.24
2661 2860 2.594303 CGTTGGTTGGGCAGCTGA 60.594 61.111 20.43 0.00 0.00 4.26
2662 2861 2.620112 CGTTGGTTGGGCAGCTGAG 61.620 63.158 20.43 0.00 0.00 3.35
2663 2862 2.115910 TTGGTTGGGCAGCTGAGG 59.884 61.111 20.43 0.00 0.00 3.86
2664 2863 2.766925 TTGGTTGGGCAGCTGAGGT 61.767 57.895 20.43 0.00 0.00 3.85
2665 2864 2.116125 GGTTGGGCAGCTGAGGTT 59.884 61.111 20.43 0.00 0.00 3.50
2666 2865 2.270986 GGTTGGGCAGCTGAGGTTG 61.271 63.158 20.43 0.00 0.00 3.77
2667 2866 2.598394 TTGGGCAGCTGAGGTTGC 60.598 61.111 20.43 0.23 46.58 4.17
2668 2867 3.137385 TTGGGCAGCTGAGGTTGCT 62.137 57.895 20.43 0.00 46.51 3.91
2673 2872 2.033757 AGCTGAGGTTGCTGCCAG 59.966 61.111 0.00 0.00 39.56 4.85
2674 2873 3.745803 GCTGAGGTTGCTGCCAGC 61.746 66.667 10.45 10.45 44.00 4.85
2675 2874 3.060615 CTGAGGTTGCTGCCAGCC 61.061 66.667 15.29 0.00 41.51 4.85
2679 2878 3.833304 GGTTGCTGCCAGCCTATC 58.167 61.111 15.29 0.00 41.51 2.08
2680 2879 1.825622 GGTTGCTGCCAGCCTATCC 60.826 63.158 15.29 7.46 41.51 2.59
2681 2880 2.182842 GTTGCTGCCAGCCTATCCG 61.183 63.158 15.29 0.00 41.51 4.18
2682 2881 2.366393 TTGCTGCCAGCCTATCCGA 61.366 57.895 15.29 0.00 41.51 4.55
2683 2882 2.030262 GCTGCCAGCCTATCCGAG 59.970 66.667 5.06 0.00 34.48 4.63
2684 2883 2.801631 GCTGCCAGCCTATCCGAGT 61.802 63.158 5.06 0.00 34.48 4.18
2685 2884 1.826024 CTGCCAGCCTATCCGAGTT 59.174 57.895 0.00 0.00 0.00 3.01
2686 2885 0.249657 CTGCCAGCCTATCCGAGTTC 60.250 60.000 0.00 0.00 0.00 3.01
2687 2886 1.300233 GCCAGCCTATCCGAGTTCG 60.300 63.158 0.00 0.00 39.44 3.95
2688 2887 1.735376 GCCAGCCTATCCGAGTTCGA 61.735 60.000 2.59 0.00 43.02 3.71
2689 2888 0.312416 CCAGCCTATCCGAGTTCGAG 59.688 60.000 2.59 0.00 43.02 4.04
2690 2889 1.025812 CAGCCTATCCGAGTTCGAGT 58.974 55.000 2.59 0.00 43.02 4.18
2691 2890 1.002251 CAGCCTATCCGAGTTCGAGTC 60.002 57.143 2.59 0.00 43.02 3.36
2692 2891 0.311477 GCCTATCCGAGTTCGAGTCC 59.689 60.000 2.59 0.00 43.02 3.85
2693 2892 0.953003 CCTATCCGAGTTCGAGTCCC 59.047 60.000 2.59 0.00 43.02 4.46
2694 2893 0.587285 CTATCCGAGTTCGAGTCCCG 59.413 60.000 2.59 0.00 43.02 5.14
2695 2894 0.816825 TATCCGAGTTCGAGTCCCGG 60.817 60.000 2.59 0.00 43.02 5.73
2696 2895 4.493747 CCGAGTTCGAGTCCCGGC 62.494 72.222 0.00 0.00 43.02 6.13
2697 2896 3.744719 CGAGTTCGAGTCCCGGCA 61.745 66.667 0.00 0.00 43.02 5.69
2698 2897 2.126031 GAGTTCGAGTCCCGGCAC 60.126 66.667 0.00 0.00 39.14 5.01
2711 2910 2.183555 GGCACGGACGAGGGTTAG 59.816 66.667 0.00 0.00 0.00 2.34
2712 2911 2.508663 GCACGGACGAGGGTTAGC 60.509 66.667 0.00 0.00 0.00 3.09
2713 2912 3.003113 GCACGGACGAGGGTTAGCT 62.003 63.158 0.00 0.00 0.00 3.32
2714 2913 1.590147 CACGGACGAGGGTTAGCTT 59.410 57.895 0.00 0.00 0.00 3.74
2715 2914 0.037605 CACGGACGAGGGTTAGCTTT 60.038 55.000 0.00 0.00 0.00 3.51
2716 2915 0.683412 ACGGACGAGGGTTAGCTTTT 59.317 50.000 0.00 0.00 0.00 2.27
2717 2916 1.076332 CGGACGAGGGTTAGCTTTTG 58.924 55.000 0.00 0.00 0.00 2.44
2718 2917 1.450025 GGACGAGGGTTAGCTTTTGG 58.550 55.000 0.00 0.00 0.00 3.28
2719 2918 1.450025 GACGAGGGTTAGCTTTTGGG 58.550 55.000 0.00 0.00 0.00 4.12
2720 2919 0.769247 ACGAGGGTTAGCTTTTGGGT 59.231 50.000 0.00 0.00 0.00 4.51
2721 2920 1.144298 ACGAGGGTTAGCTTTTGGGTT 59.856 47.619 0.00 0.00 0.00 4.11
2722 2921 1.539827 CGAGGGTTAGCTTTTGGGTTG 59.460 52.381 0.00 0.00 0.00 3.77
2723 2922 1.893137 GAGGGTTAGCTTTTGGGTTGG 59.107 52.381 0.00 0.00 0.00 3.77
2724 2923 1.219469 AGGGTTAGCTTTTGGGTTGGT 59.781 47.619 0.00 0.00 0.00 3.67
2725 2924 1.616865 GGGTTAGCTTTTGGGTTGGTC 59.383 52.381 0.00 0.00 0.00 4.02
2726 2925 2.594131 GGTTAGCTTTTGGGTTGGTCT 58.406 47.619 0.00 0.00 0.00 3.85
2727 2926 2.557056 GGTTAGCTTTTGGGTTGGTCTC 59.443 50.000 0.00 0.00 0.00 3.36
2728 2927 3.219281 GTTAGCTTTTGGGTTGGTCTCA 58.781 45.455 0.00 0.00 0.00 3.27
2729 2928 2.683211 AGCTTTTGGGTTGGTCTCAT 57.317 45.000 0.00 0.00 0.00 2.90
2730 2929 2.962859 AGCTTTTGGGTTGGTCTCATT 58.037 42.857 0.00 0.00 0.00 2.57
2731 2930 3.308401 AGCTTTTGGGTTGGTCTCATTT 58.692 40.909 0.00 0.00 0.00 2.32
2732 2931 3.711190 AGCTTTTGGGTTGGTCTCATTTT 59.289 39.130 0.00 0.00 0.00 1.82
2733 2932 4.164030 AGCTTTTGGGTTGGTCTCATTTTT 59.836 37.500 0.00 0.00 0.00 1.94
2763 2962 7.962995 ACTCTCCTCTACTAAATCAATGACA 57.037 36.000 0.00 0.00 0.00 3.58
2764 2963 8.367660 ACTCTCCTCTACTAAATCAATGACAA 57.632 34.615 0.00 0.00 0.00 3.18
2765 2964 8.474025 ACTCTCCTCTACTAAATCAATGACAAG 58.526 37.037 0.00 0.00 0.00 3.16
2766 2965 7.268586 TCTCCTCTACTAAATCAATGACAAGC 58.731 38.462 0.00 0.00 0.00 4.01
2767 2966 6.349300 TCCTCTACTAAATCAATGACAAGCC 58.651 40.000 0.00 0.00 0.00 4.35
2768 2967 6.070251 TCCTCTACTAAATCAATGACAAGCCA 60.070 38.462 0.00 0.00 0.00 4.75
2769 2968 6.259608 CCTCTACTAAATCAATGACAAGCCAG 59.740 42.308 0.00 0.00 0.00 4.85
2770 2969 4.708726 ACTAAATCAATGACAAGCCAGC 57.291 40.909 0.00 0.00 0.00 4.85
2771 2970 4.081406 ACTAAATCAATGACAAGCCAGCA 58.919 39.130 0.00 0.00 0.00 4.41
2772 2971 4.523943 ACTAAATCAATGACAAGCCAGCAA 59.476 37.500 0.00 0.00 0.00 3.91
2773 2972 4.546829 AAATCAATGACAAGCCAGCAAT 57.453 36.364 0.00 0.00 0.00 3.56
2774 2973 3.520290 ATCAATGACAAGCCAGCAATG 57.480 42.857 0.00 0.00 0.00 2.82
2775 2974 1.067425 TCAATGACAAGCCAGCAATGC 60.067 47.619 0.00 0.00 0.00 3.56
2776 2975 1.067142 CAATGACAAGCCAGCAATGCT 60.067 47.619 0.00 0.00 41.89 3.79
2777 2976 2.133281 ATGACAAGCCAGCAATGCTA 57.867 45.000 7.70 0.00 38.34 3.49
2778 2977 1.456296 TGACAAGCCAGCAATGCTAG 58.544 50.000 7.70 0.58 38.34 3.42
2779 2978 1.003464 TGACAAGCCAGCAATGCTAGA 59.997 47.619 7.70 0.00 38.34 2.43
2780 2979 2.295885 GACAAGCCAGCAATGCTAGAT 58.704 47.619 7.70 0.00 38.34 1.98
2781 2980 2.686915 GACAAGCCAGCAATGCTAGATT 59.313 45.455 7.70 2.02 38.34 2.40
2782 2981 3.094572 ACAAGCCAGCAATGCTAGATTT 58.905 40.909 7.70 0.00 38.34 2.17
2783 2982 3.512724 ACAAGCCAGCAATGCTAGATTTT 59.487 39.130 7.70 0.00 38.34 1.82
2784 2983 4.020839 ACAAGCCAGCAATGCTAGATTTTT 60.021 37.500 7.70 0.00 38.34 1.94
2785 2984 4.382345 AGCCAGCAATGCTAGATTTTTC 57.618 40.909 7.70 0.00 36.40 2.29
2786 2985 3.765511 AGCCAGCAATGCTAGATTTTTCA 59.234 39.130 7.70 0.00 36.40 2.69
2787 2986 4.221262 AGCCAGCAATGCTAGATTTTTCAA 59.779 37.500 7.70 0.00 36.40 2.69
2788 2987 4.931002 GCCAGCAATGCTAGATTTTTCAAA 59.069 37.500 7.70 0.00 36.40 2.69
2789 2988 5.409214 GCCAGCAATGCTAGATTTTTCAAAA 59.591 36.000 7.70 0.00 36.40 2.44
2790 2989 6.073112 GCCAGCAATGCTAGATTTTTCAAAAA 60.073 34.615 7.70 0.00 36.40 1.94
2810 3009 5.880054 AAAAATTCCGACATCGTCTCATT 57.120 34.783 0.00 0.00 37.74 2.57
2811 3010 5.880054 AAAATTCCGACATCGTCTCATTT 57.120 34.783 0.00 0.00 37.74 2.32
2812 3011 5.880054 AAATTCCGACATCGTCTCATTTT 57.120 34.783 0.00 0.00 37.74 1.82
2813 3012 5.880054 AATTCCGACATCGTCTCATTTTT 57.120 34.783 0.00 0.00 37.74 1.94
2843 3042 7.962995 ACTCTCCTCTACTAAATCAATGACA 57.037 36.000 0.00 0.00 0.00 3.58
2844 3043 8.367660 ACTCTCCTCTACTAAATCAATGACAA 57.632 34.615 0.00 0.00 0.00 3.18
2845 3044 8.474025 ACTCTCCTCTACTAAATCAATGACAAG 58.526 37.037 0.00 0.00 0.00 3.16
2846 3045 7.268586 TCTCCTCTACTAAATCAATGACAAGC 58.731 38.462 0.00 0.00 0.00 4.01
2847 3046 6.349300 TCCTCTACTAAATCAATGACAAGCC 58.651 40.000 0.00 0.00 0.00 4.35
2848 3047 6.070251 TCCTCTACTAAATCAATGACAAGCCA 60.070 38.462 0.00 0.00 0.00 4.75
2849 3048 6.259608 CCTCTACTAAATCAATGACAAGCCAG 59.740 42.308 0.00 0.00 0.00 4.85
2850 3049 4.708726 ACTAAATCAATGACAAGCCAGC 57.291 40.909 0.00 0.00 0.00 4.85
2851 3050 4.081406 ACTAAATCAATGACAAGCCAGCA 58.919 39.130 0.00 0.00 0.00 4.41
2852 3051 4.523943 ACTAAATCAATGACAAGCCAGCAA 59.476 37.500 0.00 0.00 0.00 3.91
2853 3052 4.546829 AAATCAATGACAAGCCAGCAAT 57.453 36.364 0.00 0.00 0.00 3.56
2854 3053 3.520290 ATCAATGACAAGCCAGCAATG 57.480 42.857 0.00 0.00 0.00 2.82
2855 3054 1.067425 TCAATGACAAGCCAGCAATGC 60.067 47.619 0.00 0.00 0.00 3.56
2856 3055 1.067142 CAATGACAAGCCAGCAATGCT 60.067 47.619 0.00 0.00 41.89 3.79
2857 3056 2.133281 ATGACAAGCCAGCAATGCTA 57.867 45.000 7.70 0.00 38.34 3.49
2858 3057 1.456296 TGACAAGCCAGCAATGCTAG 58.544 50.000 7.70 0.58 38.34 3.42
2859 3058 1.003464 TGACAAGCCAGCAATGCTAGA 59.997 47.619 7.70 0.00 38.34 2.43
2860 3059 2.295885 GACAAGCCAGCAATGCTAGAT 58.704 47.619 7.70 0.00 38.34 1.98
2861 3060 2.686915 GACAAGCCAGCAATGCTAGATT 59.313 45.455 7.70 2.02 38.34 2.40
2862 3061 3.094572 ACAAGCCAGCAATGCTAGATTT 58.905 40.909 7.70 0.00 38.34 2.17
2863 3062 3.512724 ACAAGCCAGCAATGCTAGATTTT 59.487 39.130 7.70 0.00 38.34 1.82
2864 3063 4.020839 ACAAGCCAGCAATGCTAGATTTTT 60.021 37.500 7.70 0.00 38.34 1.94
2865 3064 4.382345 AGCCAGCAATGCTAGATTTTTC 57.618 40.909 7.70 0.00 36.40 2.29
2866 3065 3.765511 AGCCAGCAATGCTAGATTTTTCA 59.234 39.130 7.70 0.00 36.40 2.69
2867 3066 4.221262 AGCCAGCAATGCTAGATTTTTCAA 59.779 37.500 7.70 0.00 36.40 2.69
2868 3067 4.931002 GCCAGCAATGCTAGATTTTTCAAA 59.069 37.500 7.70 0.00 36.40 2.69
2869 3068 5.409214 GCCAGCAATGCTAGATTTTTCAAAA 59.591 36.000 7.70 0.00 36.40 2.44
2870 3069 6.073112 GCCAGCAATGCTAGATTTTTCAAAAA 60.073 34.615 7.70 0.00 36.40 1.94
2894 3093 3.515286 GACATCGTCTCCGCCGGA 61.515 66.667 5.05 5.37 0.00 5.14
2914 3113 2.971330 GAGGACATCTGTGGAGGATCAT 59.029 50.000 0.00 0.00 36.25 2.45
3089 3301 1.420138 TCCAGGACACTCCAAACCTTC 59.580 52.381 0.00 0.00 39.61 3.46
3162 3374 4.454504 TCGTCAAGGAAACTATTTTGGAGC 59.545 41.667 0.00 0.00 42.68 4.70
3267 3494 2.434336 CCAGACATCGGAACCCATCTTA 59.566 50.000 0.00 0.00 0.00 2.10
3334 3561 1.560923 GACGATGAGACATTCCGTGG 58.439 55.000 0.00 0.00 33.32 4.94
3411 7182 3.106827 TCCATGTCAGAGGCTACAATGA 58.893 45.455 0.00 0.00 0.00 2.57
3413 7184 2.654749 TGTCAGAGGCTACAATGACG 57.345 50.000 13.55 0.00 43.94 4.35
3551 7322 3.488978 CTGCTCGCTGCTGCTGAC 61.489 66.667 14.03 3.11 43.37 3.51
3581 7352 2.103263 ACTGGACCGGCTGAAGATTATC 59.897 50.000 0.00 0.00 0.00 1.75
3585 7356 3.321111 GGACCGGCTGAAGATTATCTGTA 59.679 47.826 0.00 0.00 0.00 2.74
3647 7418 3.444703 ACTATCTTAGCTTGTGCCGAG 57.555 47.619 0.00 0.00 40.80 4.63
3656 7427 1.676014 GCTTGTGCCGAGACCTACAAT 60.676 52.381 0.00 0.00 33.15 2.71
3662 7433 2.037902 TGCCGAGACCTACAATTGTCAA 59.962 45.455 15.85 0.00 33.89 3.18
3664 7435 2.673368 CCGAGACCTACAATTGTCAAGC 59.327 50.000 15.85 3.92 33.89 4.01
3684 7455 3.563808 AGCGTTGAAGAACAAGTGCATTA 59.436 39.130 0.00 0.00 40.93 1.90
3685 7456 3.908382 GCGTTGAAGAACAAGTGCATTAG 59.092 43.478 0.00 0.00 39.39 1.73
3751 7522 1.296727 GGTTATGCGCTACTGGTTCC 58.703 55.000 9.73 0.00 0.00 3.62
3857 7629 8.485976 AGTTCAGATTTTAGTGCATAGTTCTC 57.514 34.615 0.00 0.00 0.00 2.87
3858 7630 8.317679 AGTTCAGATTTTAGTGCATAGTTCTCT 58.682 33.333 0.00 0.00 0.00 3.10
3859 7631 8.940952 GTTCAGATTTTAGTGCATAGTTCTCTT 58.059 33.333 0.00 0.00 0.00 2.85
3860 7632 9.507329 TTCAGATTTTAGTGCATAGTTCTCTTT 57.493 29.630 0.00 0.00 0.00 2.52
3861 7633 9.507329 TCAGATTTTAGTGCATAGTTCTCTTTT 57.493 29.630 0.00 0.00 0.00 2.27
3889 7661 6.531503 TGAAGCTTAGTGCATAGTTCTAGT 57.468 37.500 0.00 0.00 45.94 2.57
3894 7666 6.778069 AGCTTAGTGCATAGTTCTAGTATGGA 59.222 38.462 0.00 0.00 45.94 3.41
3895 7667 7.287927 AGCTTAGTGCATAGTTCTAGTATGGAA 59.712 37.037 0.00 0.00 45.94 3.53
3923 7695 2.747396 TGAATTGGCCTGCATGTTTC 57.253 45.000 3.32 0.00 0.00 2.78
3957 7729 0.811616 CACCATACGAAGGGCTCAGC 60.812 60.000 0.00 0.00 0.00 4.26
3961 7733 0.462759 ATACGAAGGGCTCAGCTTGC 60.463 55.000 0.00 0.09 0.00 4.01
3962 7734 1.544825 TACGAAGGGCTCAGCTTGCT 61.545 55.000 0.00 0.00 0.00 3.91
3966 7738 4.112341 GGGCTCAGCTTGCTTGCG 62.112 66.667 0.00 0.00 38.13 4.85
3974 7746 1.021202 AGCTTGCTTGCGTACAACAA 58.979 45.000 0.00 0.00 38.13 2.83
3985 7757 9.279904 TGCTTGCGTACAACAAATTATTTATAC 57.720 29.630 0.00 0.00 0.00 1.47
3986 7758 9.279904 GCTTGCGTACAACAAATTATTTATACA 57.720 29.630 0.00 0.00 0.00 2.29
4027 7799 5.432885 TTTTCCGTTTCTGTTCTCAATCC 57.567 39.130 0.00 0.00 0.00 3.01
4028 7800 3.762407 TCCGTTTCTGTTCTCAATCCA 57.238 42.857 0.00 0.00 0.00 3.41
4029 7801 3.399330 TCCGTTTCTGTTCTCAATCCAC 58.601 45.455 0.00 0.00 0.00 4.02
4030 7802 2.157668 CCGTTTCTGTTCTCAATCCACG 59.842 50.000 0.00 0.00 0.00 4.94
4031 7803 3.057019 CGTTTCTGTTCTCAATCCACGA 58.943 45.455 0.00 0.00 0.00 4.35
4032 7804 3.493129 CGTTTCTGTTCTCAATCCACGAA 59.507 43.478 0.00 0.00 0.00 3.85
4033 7805 4.152402 CGTTTCTGTTCTCAATCCACGAAT 59.848 41.667 0.00 0.00 0.00 3.34
4034 7806 5.347635 CGTTTCTGTTCTCAATCCACGAATA 59.652 40.000 0.00 0.00 0.00 1.75
4035 7807 6.036083 CGTTTCTGTTCTCAATCCACGAATAT 59.964 38.462 0.00 0.00 0.00 1.28
4036 7808 7.413000 CGTTTCTGTTCTCAATCCACGAATATT 60.413 37.037 0.00 0.00 0.00 1.28
4037 7809 7.921786 TTCTGTTCTCAATCCACGAATATTT 57.078 32.000 0.00 0.00 0.00 1.40
4038 7810 7.921786 TCTGTTCTCAATCCACGAATATTTT 57.078 32.000 0.00 0.00 0.00 1.82
4039 7811 8.335532 TCTGTTCTCAATCCACGAATATTTTT 57.664 30.769 0.00 0.00 0.00 1.94
4040 7812 9.443323 TCTGTTCTCAATCCACGAATATTTTTA 57.557 29.630 0.00 0.00 0.00 1.52
4242 8017 4.566070 CCTTCTCGGTAGCTAGCTAGGTAT 60.566 50.000 29.81 0.34 38.40 2.73
4265 8040 1.410517 AGATGTATCCACGCCTGTCAG 59.589 52.381 0.00 0.00 0.00 3.51
4309 8086 2.146724 TGTCCCTCCCACCACAGTG 61.147 63.158 0.00 0.00 44.12 3.66
4513 8291 4.207165 GGCATACCAAATCTGCTCCTTTA 58.793 43.478 0.00 0.00 36.18 1.85
4541 8319 9.859427 ATCAATAATGGTTACATGTTCAAACAG 57.141 29.630 2.30 0.00 43.04 3.16
4556 8334 5.723492 TCAAACAGCGTCATCATAATCAG 57.277 39.130 0.00 0.00 0.00 2.90
4772 8563 9.842775 TCTTGCTTGATTAGATTGATACATCTT 57.157 29.630 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
196 197 6.333416 TCTACAGCATCTTGTAGTTCATCAC 58.667 40.000 11.61 0.00 46.75 3.06
237 238 1.135915 ACAACTCGCATAGCCTCTCTG 59.864 52.381 0.00 0.00 0.00 3.35
241 242 2.582959 CGACAACTCGCATAGCCTC 58.417 57.895 0.00 0.00 31.91 4.70
346 347 8.236586 CAGCAGTAATACACAAAAAGATAGCAA 58.763 33.333 0.00 0.00 0.00 3.91
432 433 3.818210 ACCGAACATTTGAGCACAACATA 59.182 39.130 0.00 0.00 35.63 2.29
466 467 5.525378 CCTAGTCGATCAAAAGCAGCTAATT 59.475 40.000 0.00 0.00 0.00 1.40
544 545 0.603569 TCTGGGACTCTTCGCTTGAC 59.396 55.000 0.00 0.00 35.68 3.18
547 548 3.019799 TCTATCTGGGACTCTTCGCTT 57.980 47.619 0.00 0.00 35.68 4.68
582 583 4.752101 ACTCTCCAGAACAGAATTTGAACG 59.248 41.667 0.00 0.00 0.00 3.95
662 663 3.181503 CCAAGAACATCGCAGATTTCCAG 60.182 47.826 0.00 0.00 45.12 3.86
671 672 1.228398 TTGGGCCAAGAACATCGCA 60.228 52.632 16.66 0.00 0.00 5.10
859 862 3.207669 CCAGCTGCCGGAGATTGC 61.208 66.667 5.05 0.37 0.00 3.56
905 908 2.139917 CAGACAAAATCGACCCGAACA 58.860 47.619 0.00 0.00 39.99 3.18
907 910 2.823924 TCAGACAAAATCGACCCGAA 57.176 45.000 0.00 0.00 39.99 4.30
908 911 2.823924 TTCAGACAAAATCGACCCGA 57.176 45.000 0.00 0.00 41.13 5.14
909 912 4.154195 AGAAATTCAGACAAAATCGACCCG 59.846 41.667 0.00 0.00 0.00 5.28
912 915 6.304208 GCAGAAGAAATTCAGACAAAATCGAC 59.696 38.462 0.00 0.00 0.00 4.20
913 916 6.205464 AGCAGAAGAAATTCAGACAAAATCGA 59.795 34.615 0.00 0.00 0.00 3.59
915 918 7.359014 GCAAGCAGAAGAAATTCAGACAAAATC 60.359 37.037 0.00 0.00 0.00 2.17
917 920 5.750067 GCAAGCAGAAGAAATTCAGACAAAA 59.250 36.000 0.00 0.00 0.00 2.44
918 921 5.068198 AGCAAGCAGAAGAAATTCAGACAAA 59.932 36.000 0.00 0.00 0.00 2.83
920 923 4.139786 AGCAAGCAGAAGAAATTCAGACA 58.860 39.130 0.00 0.00 0.00 3.41
922 925 3.434641 CGAGCAAGCAGAAGAAATTCAGA 59.565 43.478 0.00 0.00 0.00 3.27
923 926 3.434641 TCGAGCAAGCAGAAGAAATTCAG 59.565 43.478 0.00 0.00 0.00 3.02
924 927 3.402110 TCGAGCAAGCAGAAGAAATTCA 58.598 40.909 0.00 0.00 0.00 2.57
925 928 4.612932 ATCGAGCAAGCAGAAGAAATTC 57.387 40.909 0.00 0.00 0.00 2.17
926 929 5.382618 AAATCGAGCAAGCAGAAGAAATT 57.617 34.783 0.00 0.00 0.00 1.82
927 930 5.382618 AAAATCGAGCAAGCAGAAGAAAT 57.617 34.783 0.00 0.00 0.00 2.17
928 931 4.836125 AAAATCGAGCAAGCAGAAGAAA 57.164 36.364 0.00 0.00 0.00 2.52
929 932 4.836125 AAAAATCGAGCAAGCAGAAGAA 57.164 36.364 0.00 0.00 0.00 2.52
972 1048 0.438830 GCTTACTGAACAACGCTCCG 59.561 55.000 0.00 0.00 0.00 4.63
975 1051 1.419374 CTCGCTTACTGAACAACGCT 58.581 50.000 0.00 0.00 0.00 5.07
987 1067 2.031870 TCTGCCATCTTAGCTCGCTTA 58.968 47.619 0.00 0.00 0.00 3.09
1040 1120 8.023128 CGTAATCAACTTTGAATTGGAAGACAT 58.977 33.333 0.00 0.00 41.13 3.06
1075 1155 1.201647 CTTGTGAATGGGAAGCTGCTG 59.798 52.381 1.35 0.00 0.00 4.41
1142 1222 0.601311 AGAGCACGGCTGAACTTGAC 60.601 55.000 0.00 0.00 39.88 3.18
1144 1224 0.514691 GAAGAGCACGGCTGAACTTG 59.485 55.000 0.00 0.00 39.88 3.16
1147 1227 2.383527 CCGAAGAGCACGGCTGAAC 61.384 63.158 0.00 0.00 43.74 3.18
1155 1235 1.439679 CCACCTTAACCGAAGAGCAC 58.560 55.000 0.00 0.00 37.33 4.40
1159 1239 2.500229 CAAAGCCACCTTAACCGAAGA 58.500 47.619 0.00 0.00 37.33 2.87
1163 1243 0.893727 AGCCAAAGCCACCTTAACCG 60.894 55.000 0.00 0.00 41.25 4.44
1166 1246 1.241315 GCGAGCCAAAGCCACCTTAA 61.241 55.000 0.00 0.00 41.25 1.85
1168 1248 2.985847 GCGAGCCAAAGCCACCTT 60.986 61.111 0.00 0.00 41.25 3.50
1175 1255 3.437795 CTGCCAGGCGAGCCAAAG 61.438 66.667 17.18 5.35 38.92 2.77
1229 1317 4.709397 TGGTTGAACAGATTGTGGTCTTTT 59.291 37.500 0.15 0.00 44.16 2.27
1241 1329 1.668751 GTCGTTGCTTGGTTGAACAGA 59.331 47.619 0.00 0.00 0.00 3.41
1261 1349 1.431488 CTCCATCGCCATTGTGACGG 61.431 60.000 0.00 0.00 35.69 4.79
1279 1368 1.448540 CCAGAAAGATGCCGTCGCT 60.449 57.895 0.00 0.00 35.36 4.93
1284 1373 0.813184 ATTGTGCCAGAAAGATGCCG 59.187 50.000 0.00 0.00 0.00 5.69
1288 1377 3.087031 CCAGTGATTGTGCCAGAAAGAT 58.913 45.455 0.00 0.00 0.00 2.40
1311 1400 1.105167 TACTATGGGCGTGACCTCCG 61.105 60.000 0.00 0.00 39.10 4.63
1316 1405 1.299926 CGGCTACTATGGGCGTGAC 60.300 63.158 0.00 0.00 45.42 3.67
1317 1406 3.125607 CGGCTACTATGGGCGTGA 58.874 61.111 0.00 0.00 45.42 4.35
1321 1410 0.878961 CGTTTCCGGCTACTATGGGC 60.879 60.000 0.00 0.00 0.00 5.36
1322 1411 3.284197 CGTTTCCGGCTACTATGGG 57.716 57.895 0.00 0.00 0.00 4.00
1379 1468 2.390696 TGTTCCCGAATCCTATTCCGA 58.609 47.619 0.00 0.00 0.00 4.55
1399 1488 1.396653 ATCGTACCGAATCCGACCTT 58.603 50.000 0.00 0.00 39.99 3.50
1465 1554 2.739913 CGTTTTCGCTGTTGGATCCTTA 59.260 45.455 14.23 0.00 36.22 2.69
1466 1555 1.535462 CGTTTTCGCTGTTGGATCCTT 59.465 47.619 14.23 0.00 36.22 3.36
1489 1578 3.059800 GTCCTTGAGAAAAGAAACGACGG 60.060 47.826 0.00 0.00 0.00 4.79
1490 1579 3.802685 AGTCCTTGAGAAAAGAAACGACG 59.197 43.478 0.00 0.00 0.00 5.12
1517 1697 7.880160 TGGATTCCTTACAATTAATGGACTG 57.120 36.000 3.95 0.00 0.00 3.51
1536 1726 8.370182 GGATGCATTCCTTATTGTTAATGGATT 58.630 33.333 0.00 0.00 39.51 3.01
1549 1739 1.140852 CCCTGACGGATGCATTCCTTA 59.859 52.381 0.00 0.00 42.99 2.69
1559 1749 2.113433 CGACGACTCCCTGACGGAT 61.113 63.158 0.00 0.00 41.00 4.18
1560 1750 2.745100 CGACGACTCCCTGACGGA 60.745 66.667 0.00 0.00 38.09 4.69
1666 1857 6.489361 ACGAGGGTATACATCTCTTAAACGAT 59.511 38.462 17.62 0.00 0.00 3.73
1672 1863 6.488006 GGTACAACGAGGGTATACATCTCTTA 59.512 42.308 17.62 6.47 0.00 2.10
1673 1864 5.301298 GGTACAACGAGGGTATACATCTCTT 59.699 44.000 17.62 9.82 0.00 2.85
1720 1912 0.037590 CGGTGGGAACAAGGGATGAA 59.962 55.000 0.00 0.00 46.06 2.57
1723 1915 0.909623 CTACGGTGGGAACAAGGGAT 59.090 55.000 0.00 0.00 46.06 3.85
1729 1921 1.677052 GTTTTTGCTACGGTGGGAACA 59.323 47.619 0.00 0.00 38.70 3.18
1736 1928 1.323412 TGCCATGTTTTTGCTACGGT 58.677 45.000 0.00 0.00 0.00 4.83
1737 1929 2.058057 GTTGCCATGTTTTTGCTACGG 58.942 47.619 0.00 0.00 0.00 4.02
1738 1930 3.011949 AGTTGCCATGTTTTTGCTACG 57.988 42.857 0.00 0.00 36.18 3.51
1739 1931 4.864247 CCATAGTTGCCATGTTTTTGCTAC 59.136 41.667 0.00 0.00 0.00 3.58
1740 1932 4.526262 ACCATAGTTGCCATGTTTTTGCTA 59.474 37.500 0.00 0.00 0.00 3.49
1741 1933 3.324556 ACCATAGTTGCCATGTTTTTGCT 59.675 39.130 0.00 0.00 0.00 3.91
1742 1934 3.663025 ACCATAGTTGCCATGTTTTTGC 58.337 40.909 0.00 0.00 0.00 3.68
1743 1935 4.880759 TGACCATAGTTGCCATGTTTTTG 58.119 39.130 0.00 0.00 0.00 2.44
1744 1936 4.021192 CCTGACCATAGTTGCCATGTTTTT 60.021 41.667 0.00 0.00 0.00 1.94
1745 1937 3.511146 CCTGACCATAGTTGCCATGTTTT 59.489 43.478 0.00 0.00 0.00 2.43
1746 1938 3.091545 CCTGACCATAGTTGCCATGTTT 58.908 45.455 0.00 0.00 0.00 2.83
1747 1939 2.726821 CCTGACCATAGTTGCCATGTT 58.273 47.619 0.00 0.00 0.00 2.71
1748 1940 1.683011 GCCTGACCATAGTTGCCATGT 60.683 52.381 0.00 0.00 0.00 3.21
1749 1941 1.027357 GCCTGACCATAGTTGCCATG 58.973 55.000 0.00 0.00 0.00 3.66
1750 1942 0.106519 GGCCTGACCATAGTTGCCAT 60.107 55.000 0.00 0.00 38.86 4.40
1751 1943 1.302949 GGCCTGACCATAGTTGCCA 59.697 57.895 0.00 0.00 38.86 4.92
1752 1944 1.302949 TGGCCTGACCATAGTTGCC 59.697 57.895 3.32 0.00 46.36 4.52
1770 1962 0.890996 CCGGAAAAGCTTGGCTGAGT 60.891 55.000 0.00 0.00 39.62 3.41
1776 1968 0.890996 ACAGAGCCGGAAAAGCTTGG 60.891 55.000 5.05 0.00 41.75 3.61
1781 1973 1.497722 GCGAACAGAGCCGGAAAAG 59.502 57.895 5.05 0.00 0.00 2.27
1782 1974 2.314647 CGCGAACAGAGCCGGAAAA 61.315 57.895 5.05 0.00 0.00 2.29
1800 1992 4.404654 CTTTTGCGGCGGGAGTGC 62.405 66.667 9.78 0.00 0.00 4.40
1812 2004 0.313043 CAGCCACAGACCTGCTTTTG 59.687 55.000 0.00 0.00 31.77 2.44
1818 2010 3.054503 GCAGCAGCCACAGACCTG 61.055 66.667 0.00 0.00 33.58 4.00
1824 2016 2.031616 GTGAGAGCAGCAGCCACA 59.968 61.111 0.00 0.00 43.56 4.17
1829 2021 1.146957 GCGATCTGTGAGAGCAGCAG 61.147 60.000 0.00 0.00 36.49 4.24
1833 2025 1.216444 GGTGCGATCTGTGAGAGCA 59.784 57.895 0.00 0.00 27.99 4.26
1842 2034 0.541863 CCTTTACCCAGGTGCGATCT 59.458 55.000 0.00 0.00 0.00 2.75
1847 2039 4.736739 GGTCCTTTACCCAGGTGC 57.263 61.111 0.00 0.00 43.16 5.01
1863 2055 0.107508 ACCAATCGCCATGTCTGAGG 60.108 55.000 0.00 0.00 0.00 3.86
1875 2067 1.191944 CGACGATCACAGACCAATCG 58.808 55.000 2.72 2.72 45.81 3.34
1878 2070 0.388520 CTGCGACGATCACAGACCAA 60.389 55.000 0.00 0.00 28.37 3.67
1879 2071 1.212751 CTGCGACGATCACAGACCA 59.787 57.895 0.00 0.00 28.37 4.02
1882 2074 0.881796 AACTCTGCGACGATCACAGA 59.118 50.000 0.00 0.49 33.61 3.41
1884 2076 0.109272 GGAACTCTGCGACGATCACA 60.109 55.000 0.00 0.00 0.00 3.58
1899 2091 2.726351 CCGCCAGAGGGAGAGGAAC 61.726 68.421 0.00 0.00 35.76 3.62
1908 2100 2.512515 GCTAGCAACCGCCAGAGG 60.513 66.667 10.63 0.00 39.83 3.69
1923 2117 0.593128 GAGTCACATTTTGCACCGCT 59.407 50.000 0.00 0.00 0.00 5.52
1925 2119 3.249799 TGTTAGAGTCACATTTTGCACCG 59.750 43.478 0.00 0.00 0.00 4.94
1933 2127 2.038952 TGCCTGCTGTTAGAGTCACATT 59.961 45.455 0.00 0.00 0.00 2.71
1939 2133 0.764890 TTGGTGCCTGCTGTTAGAGT 59.235 50.000 0.00 0.00 0.00 3.24
1940 2134 1.160137 GTTGGTGCCTGCTGTTAGAG 58.840 55.000 0.00 0.00 0.00 2.43
1941 2135 0.602638 CGTTGGTGCCTGCTGTTAGA 60.603 55.000 0.00 0.00 0.00 2.10
1953 2147 1.660607 CAGGTGATCGAATCGTTGGTG 59.339 52.381 1.52 0.00 0.00 4.17
1955 2149 1.134818 TCCAGGTGATCGAATCGTTGG 60.135 52.381 1.52 3.13 0.00 3.77
1959 2153 1.845266 CTGTCCAGGTGATCGAATCG 58.155 55.000 0.00 0.00 0.00 3.34
1962 2156 1.215382 CGCTGTCCAGGTGATCGAA 59.785 57.895 0.00 0.00 0.00 3.71
1963 2157 1.657751 CTCGCTGTCCAGGTGATCGA 61.658 60.000 0.00 0.00 0.00 3.59
1964 2158 1.226802 CTCGCTGTCCAGGTGATCG 60.227 63.158 0.00 0.00 0.00 3.69
1979 2173 0.248539 GTACTAACCTGAGCCGCTCG 60.249 60.000 15.58 10.03 32.35 5.03
1984 2178 1.134560 CACCGAGTACTAACCTGAGCC 59.865 57.143 0.00 0.00 0.00 4.70
1985 2179 1.817447 ACACCGAGTACTAACCTGAGC 59.183 52.381 0.00 0.00 0.00 4.26
1991 2185 1.467035 CCGAGCACACCGAGTACTAAC 60.467 57.143 0.00 0.00 0.00 2.34
1993 2187 1.651240 GCCGAGCACACCGAGTACTA 61.651 60.000 0.00 0.00 0.00 1.82
2013 2207 3.076621 CTCCTGAAACTGCATGCTGTAA 58.923 45.455 27.68 16.34 0.00 2.41
2016 2210 0.170561 GCTCCTGAAACTGCATGCTG 59.829 55.000 21.60 21.60 0.00 4.41
2018 2212 0.964358 AGGCTCCTGAAACTGCATGC 60.964 55.000 11.82 11.82 0.00 4.06
2044 2238 6.785337 TCAAATGATGGAGCAAAGATCATT 57.215 33.333 0.00 0.00 44.83 2.57
2059 2253 2.612721 GCGCCCAAGGTTTTCAAATGAT 60.613 45.455 0.00 0.00 0.00 2.45
2060 2254 1.270041 GCGCCCAAGGTTTTCAAATGA 60.270 47.619 0.00 0.00 0.00 2.57
2064 2258 1.330655 TTGGCGCCCAAGGTTTTCAA 61.331 50.000 26.77 3.84 38.75 2.69
2102 2296 0.538584 ATCGAGATGCAACAGCCAGA 59.461 50.000 0.00 0.00 0.00 3.86
2103 2297 0.935898 GATCGAGATGCAACAGCCAG 59.064 55.000 0.00 0.00 0.00 4.85
2110 2304 0.807275 CACAGGCGATCGAGATGCAA 60.807 55.000 21.57 0.00 0.00 4.08
2118 2312 2.987149 GTCATTATACCACAGGCGATCG 59.013 50.000 11.69 11.69 0.00 3.69
2132 2326 0.178068 ACGCTGAAGCCCGTCATTAT 59.822 50.000 0.00 0.00 37.91 1.28
2133 2327 1.594833 ACGCTGAAGCCCGTCATTA 59.405 52.632 0.00 0.00 37.91 1.90
2140 2334 1.153549 AATCTCGACGCTGAAGCCC 60.154 57.895 0.00 0.00 37.91 5.19
2145 2339 1.248101 TGACCCAATCTCGACGCTGA 61.248 55.000 0.00 0.00 0.00 4.26
2148 2342 0.652592 CATTGACCCAATCTCGACGC 59.347 55.000 0.00 0.00 31.05 5.19
2151 2345 5.567037 AATATCCATTGACCCAATCTCGA 57.433 39.130 0.00 0.00 31.05 4.04
2156 2350 6.314917 GGGTAGAAATATCCATTGACCCAAT 58.685 40.000 1.85 0.00 39.75 3.16
2157 2351 5.689031 CGGGTAGAAATATCCATTGACCCAA 60.689 44.000 7.49 0.00 39.85 4.12
2169 2363 3.403038 GATGCACAGCGGGTAGAAATAT 58.597 45.455 0.00 0.00 0.00 1.28
2175 2369 2.586079 CGGATGCACAGCGGGTAG 60.586 66.667 0.00 0.00 0.00 3.18
2177 2371 4.760047 GACGGATGCACAGCGGGT 62.760 66.667 0.00 0.00 0.00 5.28
2197 2391 3.074412 AGAGGTGCACCGATGTTTTTAG 58.926 45.455 29.68 0.00 42.08 1.85
2199 2393 1.981256 AGAGGTGCACCGATGTTTTT 58.019 45.000 29.68 10.18 42.08 1.94
2200 2394 1.880027 GAAGAGGTGCACCGATGTTTT 59.120 47.619 29.68 17.57 42.08 2.43
2203 2397 0.036952 CAGAAGAGGTGCACCGATGT 60.037 55.000 29.68 16.49 42.08 3.06
2226 2420 4.741239 TCTCCAGGGCCAGGGGAC 62.741 72.222 14.56 0.00 28.36 4.46
2228 2422 2.319762 AAATCTCCAGGGCCAGGGG 61.320 63.158 15.80 12.58 0.00 4.79
2230 2424 1.076485 CCAAATCTCCAGGGCCAGG 60.076 63.158 9.04 9.04 0.00 4.45
2232 2426 1.574526 CCTCCAAATCTCCAGGGCCA 61.575 60.000 6.18 0.00 0.00 5.36
2233 2427 1.228510 CCTCCAAATCTCCAGGGCC 59.771 63.158 0.00 0.00 0.00 5.80
2234 2428 0.625849 TTCCTCCAAATCTCCAGGGC 59.374 55.000 0.00 0.00 0.00 5.19
2250 2446 0.678048 ATTCCAAGTCGCTGCCTTCC 60.678 55.000 0.00 0.00 0.00 3.46
2257 2453 2.042831 GCAGCCATTCCAAGTCGCT 61.043 57.895 0.00 0.00 0.00 4.93
2260 2456 1.648467 GACCGCAGCCATTCCAAGTC 61.648 60.000 0.00 0.00 0.00 3.01
2278 2474 0.321671 CAAAGAGCGGGGTTCAGAGA 59.678 55.000 0.00 0.00 0.00 3.10
2281 2478 0.674895 CTCCAAAGAGCGGGGTTCAG 60.675 60.000 0.00 0.00 32.13 3.02
2295 2492 2.594303 CTGCCGGTGTTGCTCCAA 60.594 61.111 1.90 0.00 0.00 3.53
2306 2503 2.597217 TTTGGGTTGAGCTGCCGG 60.597 61.111 0.00 0.00 0.00 6.13
2307 2504 1.580845 CTCTTTGGGTTGAGCTGCCG 61.581 60.000 0.00 0.00 0.00 5.69
2331 2528 2.199236 GCAAAATTCTGCAGGCATAGC 58.801 47.619 15.13 7.97 42.17 2.97
2343 2540 3.801594 TCGCCTTCTTGTTTGCAAAATTC 59.198 39.130 14.67 2.08 33.73 2.17
2346 2543 2.425312 TCTCGCCTTCTTGTTTGCAAAA 59.575 40.909 14.67 0.00 33.73 2.44
2349 2546 1.674359 TTCTCGCCTTCTTGTTTGCA 58.326 45.000 0.00 0.00 0.00 4.08
2351 2548 2.605580 GCCTTTCTCGCCTTCTTGTTTG 60.606 50.000 0.00 0.00 0.00 2.93
2352 2549 1.609072 GCCTTTCTCGCCTTCTTGTTT 59.391 47.619 0.00 0.00 0.00 2.83
2355 2552 0.801251 CAGCCTTTCTCGCCTTCTTG 59.199 55.000 0.00 0.00 0.00 3.02
2356 2553 0.957888 GCAGCCTTTCTCGCCTTCTT 60.958 55.000 0.00 0.00 0.00 2.52
2358 2555 2.744768 CGCAGCCTTTCTCGCCTTC 61.745 63.158 0.00 0.00 0.00 3.46
2373 2570 1.449726 GCATGATGATTGAGGCCGCA 61.450 55.000 4.49 4.49 0.00 5.69
2374 2571 1.170919 AGCATGATGATTGAGGCCGC 61.171 55.000 0.00 0.00 0.00 6.53
2382 2579 3.149981 CCAGCAGATGAGCATGATGATT 58.850 45.455 0.00 0.00 36.85 2.57
2415 2612 8.141268 TCTTTAAAAATGCAATCGTTCCTCTTT 58.859 29.630 0.00 0.00 0.00 2.52
2416 2613 7.657336 TCTTTAAAAATGCAATCGTTCCTCTT 58.343 30.769 0.00 0.00 0.00 2.85
2446 2643 3.838271 ATCGTCCGCGGATGCAGT 61.838 61.111 37.09 23.91 42.97 4.40
2469 2666 9.502091 AGCTCTAAACTTTTTGTGATACATGTA 57.498 29.630 8.27 8.27 0.00 2.29
2471 2668 8.725148 AGAGCTCTAAACTTTTTGTGATACATG 58.275 33.333 16.50 0.00 0.00 3.21
2473 2670 7.173218 CCAGAGCTCTAAACTTTTTGTGATACA 59.827 37.037 17.75 0.00 0.00 2.29
2476 2673 6.299141 TCCAGAGCTCTAAACTTTTTGTGAT 58.701 36.000 17.75 0.00 0.00 3.06
2478 2675 6.566197 ATCCAGAGCTCTAAACTTTTTGTG 57.434 37.500 17.75 0.00 0.00 3.33
2483 2680 6.886459 TGCAATAATCCAGAGCTCTAAACTTT 59.114 34.615 17.75 8.62 0.00 2.66
2485 2682 5.994250 TGCAATAATCCAGAGCTCTAAACT 58.006 37.500 17.75 4.37 0.00 2.66
2486 2683 5.238214 CCTGCAATAATCCAGAGCTCTAAAC 59.762 44.000 17.75 0.00 0.00 2.01
2517 2715 3.297736 ACTAGATAGGGTGCGCTAAACT 58.702 45.455 9.73 4.25 0.00 2.66
2519 2717 2.626743 GGACTAGATAGGGTGCGCTAAA 59.373 50.000 9.73 0.00 0.00 1.85
2543 2741 5.251700 AGAAAAAGGCTAATCTCTCCCAGAA 59.748 40.000 0.00 0.00 33.62 3.02
2545 2743 5.104569 AGAGAAAAAGGCTAATCTCTCCCAG 60.105 44.000 16.50 0.00 43.89 4.45
2555 2753 6.547510 AGAAGCAAAAGAGAGAAAAAGGCTAA 59.452 34.615 0.00 0.00 0.00 3.09
2566 2764 1.466558 GCCCGAAGAAGCAAAAGAGAG 59.533 52.381 0.00 0.00 0.00 3.20
2567 2765 1.202758 TGCCCGAAGAAGCAAAAGAGA 60.203 47.619 0.00 0.00 33.90 3.10
2568 2766 1.198637 CTGCCCGAAGAAGCAAAAGAG 59.801 52.381 0.00 0.00 36.26 2.85
2569 2767 1.238439 CTGCCCGAAGAAGCAAAAGA 58.762 50.000 0.00 0.00 36.26 2.52
2573 2771 2.672996 GCCTGCCCGAAGAAGCAA 60.673 61.111 0.00 0.00 36.26 3.91
2574 2772 3.612247 GAGCCTGCCCGAAGAAGCA 62.612 63.158 0.00 0.00 35.45 3.91
2575 2773 2.811542 AAGAGCCTGCCCGAAGAAGC 62.812 60.000 0.00 0.00 0.00 3.86
2576 2774 1.023513 CAAGAGCCTGCCCGAAGAAG 61.024 60.000 0.00 0.00 0.00 2.85
2577 2775 1.003355 CAAGAGCCTGCCCGAAGAA 60.003 57.895 0.00 0.00 0.00 2.52
2578 2776 2.665000 CAAGAGCCTGCCCGAAGA 59.335 61.111 0.00 0.00 0.00 2.87
2596 2794 6.566197 AACAAATACAGAAGAGCTCTTTGG 57.434 37.500 29.02 24.10 36.11 3.28
2607 2806 7.041644 CCGTCCTCAGTTAAAACAAATACAGAA 60.042 37.037 0.00 0.00 0.00 3.02
2643 2842 3.673484 CAGCTGCCCAACCAACGG 61.673 66.667 0.00 0.00 0.00 4.44
2644 2843 2.594303 TCAGCTGCCCAACCAACG 60.594 61.111 9.47 0.00 0.00 4.10
2645 2844 2.270986 CCTCAGCTGCCCAACCAAC 61.271 63.158 9.47 0.00 0.00 3.77
2646 2845 2.115910 CCTCAGCTGCCCAACCAA 59.884 61.111 9.47 0.00 0.00 3.67
2647 2846 2.766925 AACCTCAGCTGCCCAACCA 61.767 57.895 9.47 0.00 0.00 3.67
2648 2847 2.116125 AACCTCAGCTGCCCAACC 59.884 61.111 9.47 0.00 0.00 3.77
2649 2848 2.924105 GCAACCTCAGCTGCCCAAC 61.924 63.158 9.47 0.00 32.18 3.77
2650 2849 2.598394 GCAACCTCAGCTGCCCAA 60.598 61.111 9.47 0.00 32.18 4.12
2651 2850 3.573229 AGCAACCTCAGCTGCCCA 61.573 61.111 9.47 0.00 41.61 5.36
2656 2855 2.033757 CTGGCAGCAACCTCAGCT 59.966 61.111 0.00 0.00 44.62 4.24
2657 2856 3.745803 GCTGGCAGCAACCTCAGC 61.746 66.667 33.33 4.00 44.34 4.26
2658 2857 2.189191 TAGGCTGGCAGCAACCTCAG 62.189 60.000 37.49 0.50 44.75 3.35
2659 2858 1.565390 ATAGGCTGGCAGCAACCTCA 61.565 55.000 37.49 17.21 44.75 3.86
2660 2859 0.817229 GATAGGCTGGCAGCAACCTC 60.817 60.000 37.49 23.87 44.75 3.85
2661 2860 1.225704 GATAGGCTGGCAGCAACCT 59.774 57.895 37.49 27.40 44.75 3.50
2662 2861 1.825622 GGATAGGCTGGCAGCAACC 60.826 63.158 37.49 27.97 44.75 3.77
2663 2862 2.182842 CGGATAGGCTGGCAGCAAC 61.183 63.158 37.49 22.95 44.75 4.17
2664 2863 2.190313 CGGATAGGCTGGCAGCAA 59.810 61.111 37.49 26.19 44.75 3.91
2665 2864 2.763710 TCGGATAGGCTGGCAGCA 60.764 61.111 37.49 21.31 44.75 4.41
2666 2865 2.030262 CTCGGATAGGCTGGCAGC 59.970 66.667 30.93 30.93 41.46 5.25
2667 2866 0.249657 GAACTCGGATAGGCTGGCAG 60.250 60.000 10.94 10.94 0.00 4.85
2668 2867 1.823295 GAACTCGGATAGGCTGGCA 59.177 57.895 3.38 0.00 0.00 4.92
2669 2868 1.300233 CGAACTCGGATAGGCTGGC 60.300 63.158 0.00 0.00 35.37 4.85
2670 2869 0.312416 CTCGAACTCGGATAGGCTGG 59.688 60.000 0.00 0.00 40.29 4.85
2671 2870 1.002251 GACTCGAACTCGGATAGGCTG 60.002 57.143 0.00 0.00 40.29 4.85
2672 2871 1.310904 GACTCGAACTCGGATAGGCT 58.689 55.000 0.00 0.00 40.29 4.58
2673 2872 0.311477 GGACTCGAACTCGGATAGGC 59.689 60.000 0.00 0.00 40.29 3.93
2674 2873 0.953003 GGGACTCGAACTCGGATAGG 59.047 60.000 0.00 0.00 40.29 2.57
2675 2874 0.587285 CGGGACTCGAACTCGGATAG 59.413 60.000 0.00 0.00 42.43 2.08
2676 2875 2.699073 CGGGACTCGAACTCGGATA 58.301 57.895 0.00 0.00 42.43 2.59
2677 2876 3.510846 CGGGACTCGAACTCGGAT 58.489 61.111 0.00 0.00 42.43 4.18
2680 2879 3.744719 TGCCGGGACTCGAACTCG 61.745 66.667 2.18 4.83 42.43 4.18
2681 2880 2.126031 GTGCCGGGACTCGAACTC 60.126 66.667 20.19 0.00 42.43 3.01
2682 2881 4.052229 CGTGCCGGGACTCGAACT 62.052 66.667 24.50 0.00 42.43 3.01
2693 2892 3.695022 CTAACCCTCGTCCGTGCCG 62.695 68.421 0.00 0.00 0.00 5.69
2694 2893 2.183555 CTAACCCTCGTCCGTGCC 59.816 66.667 0.00 0.00 0.00 5.01
2695 2894 2.502692 AAGCTAACCCTCGTCCGTGC 62.503 60.000 0.00 0.00 0.00 5.34
2696 2895 0.037605 AAAGCTAACCCTCGTCCGTG 60.038 55.000 0.00 0.00 0.00 4.94
2697 2896 0.683412 AAAAGCTAACCCTCGTCCGT 59.317 50.000 0.00 0.00 0.00 4.69
2698 2897 1.076332 CAAAAGCTAACCCTCGTCCG 58.924 55.000 0.00 0.00 0.00 4.79
2699 2898 1.450025 CCAAAAGCTAACCCTCGTCC 58.550 55.000 0.00 0.00 0.00 4.79
2700 2899 1.271217 ACCCAAAAGCTAACCCTCGTC 60.271 52.381 0.00 0.00 0.00 4.20
2701 2900 0.769247 ACCCAAAAGCTAACCCTCGT 59.231 50.000 0.00 0.00 0.00 4.18
2702 2901 1.539827 CAACCCAAAAGCTAACCCTCG 59.460 52.381 0.00 0.00 0.00 4.63
2703 2902 1.893137 CCAACCCAAAAGCTAACCCTC 59.107 52.381 0.00 0.00 0.00 4.30
2704 2903 1.219469 ACCAACCCAAAAGCTAACCCT 59.781 47.619 0.00 0.00 0.00 4.34
2705 2904 1.616865 GACCAACCCAAAAGCTAACCC 59.383 52.381 0.00 0.00 0.00 4.11
2706 2905 2.557056 GAGACCAACCCAAAAGCTAACC 59.443 50.000 0.00 0.00 0.00 2.85
2707 2906 3.219281 TGAGACCAACCCAAAAGCTAAC 58.781 45.455 0.00 0.00 0.00 2.34
2708 2907 3.586470 TGAGACCAACCCAAAAGCTAA 57.414 42.857 0.00 0.00 0.00 3.09
2709 2908 3.806949 ATGAGACCAACCCAAAAGCTA 57.193 42.857 0.00 0.00 0.00 3.32
2710 2909 2.683211 ATGAGACCAACCCAAAAGCT 57.317 45.000 0.00 0.00 0.00 3.74
2711 2910 3.751479 AAATGAGACCAACCCAAAAGC 57.249 42.857 0.00 0.00 0.00 3.51
2737 2936 9.475620 TGTCATTGATTTAGTAGAGGAGAGTTA 57.524 33.333 0.00 0.00 0.00 2.24
2738 2937 8.367660 TGTCATTGATTTAGTAGAGGAGAGTT 57.632 34.615 0.00 0.00 0.00 3.01
2739 2938 7.962995 TGTCATTGATTTAGTAGAGGAGAGT 57.037 36.000 0.00 0.00 0.00 3.24
2740 2939 7.437862 GCTTGTCATTGATTTAGTAGAGGAGAG 59.562 40.741 0.00 0.00 0.00 3.20
2741 2940 7.268586 GCTTGTCATTGATTTAGTAGAGGAGA 58.731 38.462 0.00 0.00 0.00 3.71
2742 2941 6.481644 GGCTTGTCATTGATTTAGTAGAGGAG 59.518 42.308 0.00 0.00 0.00 3.69
2743 2942 6.070251 TGGCTTGTCATTGATTTAGTAGAGGA 60.070 38.462 0.00 0.00 0.00 3.71
2744 2943 6.115446 TGGCTTGTCATTGATTTAGTAGAGG 58.885 40.000 0.00 0.00 0.00 3.69
2745 2944 6.238320 GCTGGCTTGTCATTGATTTAGTAGAG 60.238 42.308 0.00 0.00 0.00 2.43
2746 2945 5.586243 GCTGGCTTGTCATTGATTTAGTAGA 59.414 40.000 0.00 0.00 0.00 2.59
2747 2946 5.355071 TGCTGGCTTGTCATTGATTTAGTAG 59.645 40.000 0.00 0.00 0.00 2.57
2748 2947 5.252547 TGCTGGCTTGTCATTGATTTAGTA 58.747 37.500 0.00 0.00 0.00 1.82
2749 2948 4.081406 TGCTGGCTTGTCATTGATTTAGT 58.919 39.130 0.00 0.00 0.00 2.24
2750 2949 4.707030 TGCTGGCTTGTCATTGATTTAG 57.293 40.909 0.00 0.00 0.00 1.85
2751 2950 5.412640 CATTGCTGGCTTGTCATTGATTTA 58.587 37.500 0.00 0.00 0.00 1.40
2752 2951 4.250464 CATTGCTGGCTTGTCATTGATTT 58.750 39.130 0.00 0.00 0.00 2.17
2753 2952 3.857052 CATTGCTGGCTTGTCATTGATT 58.143 40.909 0.00 0.00 0.00 2.57
2754 2953 2.418197 GCATTGCTGGCTTGTCATTGAT 60.418 45.455 0.16 0.00 0.00 2.57
2755 2954 1.067425 GCATTGCTGGCTTGTCATTGA 60.067 47.619 0.16 0.00 0.00 2.57
2756 2955 1.067142 AGCATTGCTGGCTTGTCATTG 60.067 47.619 11.09 0.00 38.81 2.82
2757 2956 1.263356 AGCATTGCTGGCTTGTCATT 58.737 45.000 11.09 0.00 38.81 2.57
2758 2957 2.022195 CTAGCATTGCTGGCTTGTCAT 58.978 47.619 21.31 0.00 42.62 3.06
2759 2958 1.003464 TCTAGCATTGCTGGCTTGTCA 59.997 47.619 21.31 0.00 42.62 3.58
2760 2959 1.742761 TCTAGCATTGCTGGCTTGTC 58.257 50.000 21.31 0.00 42.62 3.18
2761 2960 2.431954 ATCTAGCATTGCTGGCTTGT 57.568 45.000 21.31 2.77 42.62 3.16
2762 2961 3.795623 AAATCTAGCATTGCTGGCTTG 57.204 42.857 21.31 6.31 42.62 4.01
2763 2962 4.221262 TGAAAAATCTAGCATTGCTGGCTT 59.779 37.500 21.31 13.00 42.62 4.35
2764 2963 3.765511 TGAAAAATCTAGCATTGCTGGCT 59.234 39.130 21.31 7.00 45.18 4.75
2765 2964 4.114058 TGAAAAATCTAGCATTGCTGGC 57.886 40.909 21.31 4.92 40.10 4.85
2766 2965 7.424227 TTTTTGAAAAATCTAGCATTGCTGG 57.576 32.000 21.31 18.24 40.10 4.85
2788 2987 5.880054 AATGAGACGATGTCGGAATTTTT 57.120 34.783 7.38 0.00 44.95 1.94
2789 2988 5.880054 AAATGAGACGATGTCGGAATTTT 57.120 34.783 7.38 0.00 44.95 1.82
2790 2989 5.880054 AAAATGAGACGATGTCGGAATTT 57.120 34.783 7.38 4.70 44.95 1.82
2791 2990 5.880054 AAAAATGAGACGATGTCGGAATT 57.120 34.783 7.38 0.00 44.95 2.17
2817 3016 9.475620 TGTCATTGATTTAGTAGAGGAGAGTTA 57.524 33.333 0.00 0.00 0.00 2.24
2818 3017 8.367660 TGTCATTGATTTAGTAGAGGAGAGTT 57.632 34.615 0.00 0.00 0.00 3.01
2819 3018 7.962995 TGTCATTGATTTAGTAGAGGAGAGT 57.037 36.000 0.00 0.00 0.00 3.24
2820 3019 7.437862 GCTTGTCATTGATTTAGTAGAGGAGAG 59.562 40.741 0.00 0.00 0.00 3.20
2821 3020 7.268586 GCTTGTCATTGATTTAGTAGAGGAGA 58.731 38.462 0.00 0.00 0.00 3.71
2822 3021 6.481644 GGCTTGTCATTGATTTAGTAGAGGAG 59.518 42.308 0.00 0.00 0.00 3.69
2823 3022 6.070251 TGGCTTGTCATTGATTTAGTAGAGGA 60.070 38.462 0.00 0.00 0.00 3.71
2824 3023 6.115446 TGGCTTGTCATTGATTTAGTAGAGG 58.885 40.000 0.00 0.00 0.00 3.69
2825 3024 6.238320 GCTGGCTTGTCATTGATTTAGTAGAG 60.238 42.308 0.00 0.00 0.00 2.43
2826 3025 5.586243 GCTGGCTTGTCATTGATTTAGTAGA 59.414 40.000 0.00 0.00 0.00 2.59
2827 3026 5.355071 TGCTGGCTTGTCATTGATTTAGTAG 59.645 40.000 0.00 0.00 0.00 2.57
2828 3027 5.252547 TGCTGGCTTGTCATTGATTTAGTA 58.747 37.500 0.00 0.00 0.00 1.82
2829 3028 4.081406 TGCTGGCTTGTCATTGATTTAGT 58.919 39.130 0.00 0.00 0.00 2.24
2830 3029 4.707030 TGCTGGCTTGTCATTGATTTAG 57.293 40.909 0.00 0.00 0.00 1.85
2831 3030 5.412640 CATTGCTGGCTTGTCATTGATTTA 58.587 37.500 0.00 0.00 0.00 1.40
2832 3031 4.250464 CATTGCTGGCTTGTCATTGATTT 58.750 39.130 0.00 0.00 0.00 2.17
2833 3032 3.857052 CATTGCTGGCTTGTCATTGATT 58.143 40.909 0.00 0.00 0.00 2.57
2834 3033 2.418197 GCATTGCTGGCTTGTCATTGAT 60.418 45.455 0.16 0.00 0.00 2.57
2835 3034 1.067425 GCATTGCTGGCTTGTCATTGA 60.067 47.619 0.16 0.00 0.00 2.57
2836 3035 1.067142 AGCATTGCTGGCTTGTCATTG 60.067 47.619 11.09 0.00 38.81 2.82
2837 3036 1.263356 AGCATTGCTGGCTTGTCATT 58.737 45.000 11.09 0.00 38.81 2.57
2838 3037 2.022195 CTAGCATTGCTGGCTTGTCAT 58.978 47.619 21.31 0.00 42.62 3.06
2839 3038 1.003464 TCTAGCATTGCTGGCTTGTCA 59.997 47.619 21.31 0.00 42.62 3.58
2840 3039 1.742761 TCTAGCATTGCTGGCTTGTC 58.257 50.000 21.31 0.00 42.62 3.18
2841 3040 2.431954 ATCTAGCATTGCTGGCTTGT 57.568 45.000 21.31 2.77 42.62 3.16
2842 3041 3.795623 AAATCTAGCATTGCTGGCTTG 57.204 42.857 21.31 6.31 42.62 4.01
2843 3042 4.221262 TGAAAAATCTAGCATTGCTGGCTT 59.779 37.500 21.31 13.00 42.62 4.35
2844 3043 3.765511 TGAAAAATCTAGCATTGCTGGCT 59.234 39.130 21.31 7.00 45.18 4.75
2845 3044 4.114058 TGAAAAATCTAGCATTGCTGGC 57.886 40.909 21.31 4.92 40.10 4.85
2846 3045 7.424227 TTTTTGAAAAATCTAGCATTGCTGG 57.576 32.000 21.31 18.24 40.10 4.85
2894 3093 2.557555 TGATCCTCCACAGATGTCCT 57.442 50.000 0.00 0.00 0.00 3.85
3089 3301 6.512415 GCTGGTCTTTATCTCCATTGATTTCG 60.512 42.308 0.00 0.00 0.00 3.46
3162 3374 6.702329 AGTGTCTCCCTGTTAAGTAATCTTG 58.298 40.000 0.00 0.00 35.36 3.02
3291 3518 0.959553 ACGAATGACACGTCTGTCCT 59.040 50.000 3.94 0.00 45.68 3.85
3413 7184 2.432456 TCGTGCAGCGTGATGGAC 60.432 61.111 0.00 0.00 42.13 4.02
3608 7379 4.737855 AGTTGCAACTGTATCTACCGAT 57.262 40.909 30.66 2.10 37.98 4.18
3647 7418 3.496884 TCAACGCTTGACAATTGTAGGTC 59.503 43.478 11.95 0.00 34.08 3.85
3656 7427 3.438781 ACTTGTTCTTCAACGCTTGACAA 59.561 39.130 0.76 0.00 39.87 3.18
3662 7433 1.378531 TGCACTTGTTCTTCAACGCT 58.621 45.000 0.00 0.00 34.95 5.07
3664 7435 3.908382 GCTAATGCACTTGTTCTTCAACG 59.092 43.478 0.00 0.00 39.41 4.10
3684 7455 0.036732 TCATCCGCCACAAAGAAGCT 59.963 50.000 0.00 0.00 0.00 3.74
3685 7456 0.881118 TTCATCCGCCACAAAGAAGC 59.119 50.000 0.00 0.00 0.00 3.86
3751 7522 3.809832 AGCAGTAATCGATGGGAATTTCG 59.190 43.478 0.00 0.00 0.00 3.46
3862 7634 7.510549 AGAACTATGCACTAAGCTTCAAAAA 57.489 32.000 0.00 0.00 45.94 1.94
3863 7635 7.878127 ACTAGAACTATGCACTAAGCTTCAAAA 59.122 33.333 0.00 0.00 45.94 2.44
3864 7636 7.386851 ACTAGAACTATGCACTAAGCTTCAAA 58.613 34.615 0.00 0.00 45.94 2.69
3865 7637 6.936279 ACTAGAACTATGCACTAAGCTTCAA 58.064 36.000 0.00 0.00 45.94 2.69
3866 7638 6.531503 ACTAGAACTATGCACTAAGCTTCA 57.468 37.500 0.00 0.00 45.94 3.02
3867 7639 7.596995 CCATACTAGAACTATGCACTAAGCTTC 59.403 40.741 0.00 0.00 45.94 3.86
3868 7640 7.287927 TCCATACTAGAACTATGCACTAAGCTT 59.712 37.037 3.48 3.48 45.94 3.74
3869 7641 6.778069 TCCATACTAGAACTATGCACTAAGCT 59.222 38.462 0.00 0.00 45.94 3.74
3870 7642 6.982852 TCCATACTAGAACTATGCACTAAGC 58.017 40.000 0.00 0.00 45.96 3.09
3889 7661 9.246670 CAGGCCAATTCATTAGAATATTCCATA 57.753 33.333 11.92 0.00 43.52 2.74
3894 7666 6.982160 TGCAGGCCAATTCATTAGAATATT 57.018 33.333 5.01 0.00 43.52 1.28
3895 7667 6.495872 ACATGCAGGCCAATTCATTAGAATAT 59.504 34.615 5.01 0.00 43.52 1.28
3897 7669 4.652421 ACATGCAGGCCAATTCATTAGAAT 59.348 37.500 5.01 0.00 46.20 2.40
3923 7695 7.827819 TCGTATGGTGTTATTTTCTTCTCTG 57.172 36.000 0.00 0.00 0.00 3.35
3957 7729 6.689178 AATAATTTGTTGTACGCAAGCAAG 57.311 33.333 3.49 0.00 45.62 4.01
4004 7776 5.358442 TGGATTGAGAACAGAAACGGAAAAA 59.642 36.000 0.00 0.00 0.00 1.94
4005 7777 4.884744 TGGATTGAGAACAGAAACGGAAAA 59.115 37.500 0.00 0.00 0.00 2.29
4006 7778 4.274950 GTGGATTGAGAACAGAAACGGAAA 59.725 41.667 0.00 0.00 0.00 3.13
4007 7779 3.813166 GTGGATTGAGAACAGAAACGGAA 59.187 43.478 0.00 0.00 0.00 4.30
4008 7780 3.399330 GTGGATTGAGAACAGAAACGGA 58.601 45.455 0.00 0.00 0.00 4.69
4009 7781 2.157668 CGTGGATTGAGAACAGAAACGG 59.842 50.000 0.00 0.00 0.00 4.44
4010 7782 3.057019 TCGTGGATTGAGAACAGAAACG 58.943 45.455 0.00 0.00 0.00 3.60
4011 7783 5.613358 ATTCGTGGATTGAGAACAGAAAC 57.387 39.130 0.00 0.00 0.00 2.78
4012 7784 7.921786 AATATTCGTGGATTGAGAACAGAAA 57.078 32.000 0.00 0.00 0.00 2.52
4013 7785 7.921786 AAATATTCGTGGATTGAGAACAGAA 57.078 32.000 0.00 0.00 0.00 3.02
4014 7786 7.921786 AAAATATTCGTGGATTGAGAACAGA 57.078 32.000 0.00 0.00 0.00 3.41
4033 7805 9.384682 GTGCACGCTTACTAGTTTTTAAAAATA 57.615 29.630 16.02 8.92 0.00 1.40
4034 7806 7.112426 CGTGCACGCTTACTAGTTTTTAAAAAT 59.888 33.333 28.16 8.31 0.00 1.82
4035 7807 6.411492 CGTGCACGCTTACTAGTTTTTAAAAA 59.589 34.615 28.16 9.31 0.00 1.94
4036 7808 5.902981 CGTGCACGCTTACTAGTTTTTAAAA 59.097 36.000 28.16 0.00 0.00 1.52
4037 7809 5.006552 ACGTGCACGCTTACTAGTTTTTAAA 59.993 36.000 37.35 0.00 44.43 1.52
4038 7810 4.507388 ACGTGCACGCTTACTAGTTTTTAA 59.493 37.500 37.35 0.00 44.43 1.52
4039 7811 4.050553 ACGTGCACGCTTACTAGTTTTTA 58.949 39.130 37.35 0.00 44.43 1.52
4040 7812 2.867975 ACGTGCACGCTTACTAGTTTTT 59.132 40.909 37.35 11.79 44.43 1.94
4041 7813 2.220133 CACGTGCACGCTTACTAGTTTT 59.780 45.455 37.35 12.01 44.43 2.43
4309 8086 2.041216 AGAACCACCATAGGGGAAACAC 59.959 50.000 0.00 0.00 41.15 3.32
4541 8319 3.495753 TGTCATGCTGATTATGATGACGC 59.504 43.478 0.00 0.00 45.09 5.19
4556 8334 3.485947 TTCCGCTATGTTTTGTCATGC 57.514 42.857 0.00 0.00 0.00 4.06
4655 8446 1.473257 CCTTCTAGCAGCGCCATAACA 60.473 52.381 2.29 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.