Multiple sequence alignment - TraesCS1A01G092800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G092800 chr1A 100.000 2972 0 0 1 2972 85336375 85339346 0.000000e+00 5489.0
1 TraesCS1A01G092800 chr1A 97.561 41 1 0 100 140 82961904 82961944 1.480000e-08 71.3
2 TraesCS1A01G092800 chr1B 96.645 1252 38 2 793 2040 142516394 142517645 0.000000e+00 2076.0
3 TraesCS1A01G092800 chr1B 91.036 647 37 6 2338 2964 670921903 670921258 0.000000e+00 854.0
4 TraesCS1A01G092800 chr1B 100.000 98 0 0 591 688 672571831 672571734 6.540000e-42 182.0
5 TraesCS1A01G092800 chr1D 94.113 1376 36 14 683 2040 89236379 89237727 0.000000e+00 2050.0
6 TraesCS1A01G092800 chr1D 90.076 655 34 9 2330 2964 481599456 481598813 0.000000e+00 821.0
7 TraesCS1A01G092800 chr1D 88.679 477 41 10 1 470 89234187 89234657 1.200000e-158 569.0
8 TraesCS1A01G092800 chr1D 82.215 298 48 5 178 473 199758648 199758354 4.920000e-63 252.0
9 TraesCS1A01G092800 chr5B 92.214 655 29 5 2330 2964 701158552 701159204 0.000000e+00 907.0
10 TraesCS1A01G092800 chr5B 93.478 46 3 0 2235 2280 515178221 515178176 5.320000e-08 69.4
11 TraesCS1A01G092800 chr7B 91.692 650 34 4 2335 2964 677866527 677867176 0.000000e+00 883.0
12 TraesCS1A01G092800 chr7B 91.311 656 34 14 2329 2964 100398526 100397874 0.000000e+00 874.0
13 TraesCS1A01G092800 chr7B 90.979 654 38 9 2331 2964 34622258 34621606 0.000000e+00 861.0
14 TraesCS1A01G092800 chr4A 91.564 652 35 7 2330 2961 598795699 598796350 0.000000e+00 881.0
15 TraesCS1A01G092800 chr4A 89.908 654 33 13 2331 2964 628856615 628855975 0.000000e+00 811.0
16 TraesCS1A01G092800 chr2D 91.145 655 38 11 2330 2964 34361573 34360919 0.000000e+00 870.0
17 TraesCS1A01G092800 chr6B 91.104 652 37 10 2333 2964 140754021 140754671 0.000000e+00 863.0
18 TraesCS1A01G092800 chr6B 91.987 624 30 6 2327 2930 16345046 16345669 0.000000e+00 857.0
19 TraesCS1A01G092800 chr6B 83.746 283 41 5 189 469 686812207 686812486 2.270000e-66 263.0
20 TraesCS1A01G092800 chr6B 100.000 98 0 0 591 688 297455385 297455482 6.540000e-42 182.0
21 TraesCS1A01G092800 chr6B 82.955 88 9 5 5 89 588073253 588073169 1.140000e-09 75.0
22 TraesCS1A01G092800 chrUn 90.951 652 38 10 2333 2964 6061868 6061218 0.000000e+00 857.0
23 TraesCS1A01G092800 chrUn 90.816 490 25 5 2495 2964 462066748 462066259 3.230000e-179 638.0
24 TraesCS1A01G092800 chrUn 100.000 98 0 0 591 688 206780928 206781025 6.540000e-42 182.0
25 TraesCS1A01G092800 chr7A 90.701 656 41 4 2329 2964 171246984 171246329 0.000000e+00 856.0
26 TraesCS1A01G092800 chr7A 84.211 95 13 2 47 140 21270011 21269918 1.130000e-14 91.6
27 TraesCS1A01G092800 chr4B 90.534 655 37 7 2329 2962 3884196 3883546 0.000000e+00 843.0
28 TraesCS1A01G092800 chr4B 83.969 262 38 4 213 473 41756058 41755800 6.360000e-62 248.0
29 TraesCS1A01G092800 chr2B 89.877 652 45 8 2333 2964 656523690 656524340 0.000000e+00 819.0
30 TraesCS1A01G092800 chr2B 86.614 254 26 8 184 434 28729782 28730030 1.050000e-69 274.0
31 TraesCS1A01G092800 chr2B 100.000 98 0 0 591 688 328780926 328781023 6.540000e-42 182.0
32 TraesCS1A01G092800 chr3D 88.140 371 38 4 2600 2964 94679141 94678771 1.260000e-118 436.0
33 TraesCS1A01G092800 chr3D 100.000 98 0 0 591 688 399725589 399725686 6.540000e-42 182.0
34 TraesCS1A01G092800 chr5A 86.173 405 43 12 933 1334 552585556 552585162 2.740000e-115 425.0
35 TraesCS1A01G092800 chr7D 92.143 280 19 2 990 1266 501385219 501384940 2.780000e-105 392.0
36 TraesCS1A01G092800 chr7D 89.286 280 26 3 990 1266 501383980 501383702 6.100000e-92 348.0
37 TraesCS1A01G092800 chr7D 84.965 286 41 2 188 473 104883717 104883434 3.750000e-74 289.0
38 TraesCS1A01G092800 chr7D 84.815 270 36 5 190 458 94000277 94000012 1.760000e-67 267.0
39 TraesCS1A01G092800 chr7D 86.574 216 15 8 1457 1672 501384402 501384201 2.980000e-55 226.0
40 TraesCS1A01G092800 chr7D 85.185 216 18 8 1457 1672 501383158 501382957 3.000000e-50 209.0
41 TraesCS1A01G092800 chr7D 100.000 98 0 0 591 688 307128919 307129016 6.540000e-42 182.0
42 TraesCS1A01G092800 chr7D 100.000 98 0 0 591 688 336509727 336509630 6.540000e-42 182.0
43 TraesCS1A01G092800 chr5D 82.639 288 43 7 189 473 462731316 462731033 6.360000e-62 248.0
44 TraesCS1A01G092800 chr5D 82.253 293 40 10 188 473 462463276 462462989 2.960000e-60 243.0
45 TraesCS1A01G092800 chr4D 100.000 98 0 0 591 688 123274340 123274437 6.540000e-42 182.0
46 TraesCS1A01G092800 chr3B 100.000 98 0 0 591 688 669798260 669798163 6.540000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G092800 chr1A 85336375 85339346 2971 False 5489.00 5489 100.000 1 2972 1 chr1A.!!$F2 2971
1 TraesCS1A01G092800 chr1B 142516394 142517645 1251 False 2076.00 2076 96.645 793 2040 1 chr1B.!!$F1 1247
2 TraesCS1A01G092800 chr1B 670921258 670921903 645 True 854.00 854 91.036 2338 2964 1 chr1B.!!$R1 626
3 TraesCS1A01G092800 chr1D 89234187 89237727 3540 False 1309.50 2050 91.396 1 2040 2 chr1D.!!$F1 2039
4 TraesCS1A01G092800 chr1D 481598813 481599456 643 True 821.00 821 90.076 2330 2964 1 chr1D.!!$R2 634
5 TraesCS1A01G092800 chr5B 701158552 701159204 652 False 907.00 907 92.214 2330 2964 1 chr5B.!!$F1 634
6 TraesCS1A01G092800 chr7B 677866527 677867176 649 False 883.00 883 91.692 2335 2964 1 chr7B.!!$F1 629
7 TraesCS1A01G092800 chr7B 100397874 100398526 652 True 874.00 874 91.311 2329 2964 1 chr7B.!!$R2 635
8 TraesCS1A01G092800 chr7B 34621606 34622258 652 True 861.00 861 90.979 2331 2964 1 chr7B.!!$R1 633
9 TraesCS1A01G092800 chr4A 598795699 598796350 651 False 881.00 881 91.564 2330 2961 1 chr4A.!!$F1 631
10 TraesCS1A01G092800 chr4A 628855975 628856615 640 True 811.00 811 89.908 2331 2964 1 chr4A.!!$R1 633
11 TraesCS1A01G092800 chr2D 34360919 34361573 654 True 870.00 870 91.145 2330 2964 1 chr2D.!!$R1 634
12 TraesCS1A01G092800 chr6B 140754021 140754671 650 False 863.00 863 91.104 2333 2964 1 chr6B.!!$F2 631
13 TraesCS1A01G092800 chr6B 16345046 16345669 623 False 857.00 857 91.987 2327 2930 1 chr6B.!!$F1 603
14 TraesCS1A01G092800 chrUn 6061218 6061868 650 True 857.00 857 90.951 2333 2964 1 chrUn.!!$R1 631
15 TraesCS1A01G092800 chr7A 171246329 171246984 655 True 856.00 856 90.701 2329 2964 1 chr7A.!!$R2 635
16 TraesCS1A01G092800 chr4B 3883546 3884196 650 True 843.00 843 90.534 2329 2962 1 chr4B.!!$R1 633
17 TraesCS1A01G092800 chr2B 656523690 656524340 650 False 819.00 819 89.877 2333 2964 1 chr2B.!!$F3 631
18 TraesCS1A01G092800 chr7D 501382957 501385219 2262 True 293.75 392 88.297 990 1672 4 chr7D.!!$R4 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
626 2225 0.03601 GGCTCCCGTATGCATGCTAT 60.036 55.0 20.33 12.94 0.0 2.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2429 4419 0.24445 CCATGTCATGTGGGTTGTGC 59.756 55.0 11.84 0.0 32.98 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 145 7.599998 CAGAAATCCATTCCTACAAACCAAAAG 59.400 37.037 0.00 0.00 38.94 2.27
144 148 6.399639 TCCATTCCTACAAACCAAAAGAAC 57.600 37.500 0.00 0.00 0.00 3.01
145 149 5.894393 TCCATTCCTACAAACCAAAAGAACA 59.106 36.000 0.00 0.00 0.00 3.18
146 150 5.983118 CCATTCCTACAAACCAAAAGAACAC 59.017 40.000 0.00 0.00 0.00 3.32
150 154 6.391537 TCCTACAAACCAAAAGAACACAAAC 58.608 36.000 0.00 0.00 0.00 2.93
151 155 5.287513 CCTACAAACCAAAAGAACACAAACG 59.712 40.000 0.00 0.00 0.00 3.60
153 157 5.474825 ACAAACCAAAAGAACACAAACGAT 58.525 33.333 0.00 0.00 0.00 3.73
156 160 6.641176 AACCAAAAGAACACAAACGATTTC 57.359 33.333 0.00 0.00 0.00 2.17
172 176 8.487176 CAAACGATTTCTTCCCTAACAAAATTG 58.513 33.333 0.00 0.00 0.00 2.32
178 182 7.404671 TTCTTCCCTAACAAAATTGCTATCC 57.595 36.000 0.00 0.00 0.00 2.59
248 254 3.191162 TCTCAACATGTAAGCAATGCCAC 59.809 43.478 0.00 0.56 0.00 5.01
264 270 7.837689 AGCAATGCCACCTCATCATATAATTAT 59.162 33.333 0.00 2.97 0.00 1.28
342 348 4.755629 CACCATTCAACCATGCATGAAAAA 59.244 37.500 28.31 15.58 38.88 1.94
455 461 3.806949 TGATTCCCAAGTTAGCAACCT 57.193 42.857 0.00 0.00 0.00 3.50
470 476 5.453567 AGCAACCTAACTTTTCATCAACC 57.546 39.130 0.00 0.00 0.00 3.77
478 592 7.287696 ACCTAACTTTTCATCAACCAAGACAAT 59.712 33.333 0.00 0.00 0.00 2.71
484 598 9.480053 CTTTTCATCAACCAAGACAATATGTTT 57.520 29.630 0.00 0.00 0.00 2.83
487 601 8.815141 TCATCAACCAAGACAATATGTTTTTG 57.185 30.769 0.00 0.00 0.00 2.44
502 616 9.777297 AATATGTTTTTGTAATTGTGCTTTCCT 57.223 25.926 0.00 0.00 0.00 3.36
507 621 8.968242 GTTTTTGTAATTGTGCTTTCCTAGAAG 58.032 33.333 0.00 0.00 0.00 2.85
509 623 8.458573 TTTGTAATTGTGCTTTCCTAGAAGAA 57.541 30.769 0.00 0.00 0.00 2.52
510 624 7.672983 TGTAATTGTGCTTTCCTAGAAGAAG 57.327 36.000 0.00 0.00 0.00 2.85
511 625 7.450074 TGTAATTGTGCTTTCCTAGAAGAAGA 58.550 34.615 0.00 0.00 0.00 2.87
512 626 7.936847 TGTAATTGTGCTTTCCTAGAAGAAGAA 59.063 33.333 0.00 0.00 0.00 2.52
537 651 3.131326 CACGGTATGTGCTTTCCGA 57.869 52.632 9.37 0.00 44.86 4.55
538 652 1.434555 CACGGTATGTGCTTTCCGAA 58.565 50.000 9.37 0.00 44.86 4.30
600 2199 9.809096 ACAGATTACTAGTAGTTCACATGATTG 57.191 33.333 8.40 0.00 0.00 2.67
601 2200 9.254133 CAGATTACTAGTAGTTCACATGATTGG 57.746 37.037 8.40 0.00 0.00 3.16
602 2201 9.201989 AGATTACTAGTAGTTCACATGATTGGA 57.798 33.333 8.40 0.00 0.00 3.53
603 2202 9.817809 GATTACTAGTAGTTCACATGATTGGAA 57.182 33.333 8.40 0.00 0.00 3.53
607 2206 9.770097 ACTAGTAGTTCACATGATTGGAATATG 57.230 33.333 0.00 0.00 0.00 1.78
608 2207 9.212641 CTAGTAGTTCACATGATTGGAATATGG 57.787 37.037 0.00 0.00 0.00 2.74
609 2208 5.779529 AGTTCACATGATTGGAATATGGC 57.220 39.130 0.00 0.00 0.00 4.40
610 2209 5.452255 AGTTCACATGATTGGAATATGGCT 58.548 37.500 0.00 0.00 0.00 4.75
611 2210 5.533903 AGTTCACATGATTGGAATATGGCTC 59.466 40.000 0.00 0.00 0.00 4.70
612 2211 4.401022 TCACATGATTGGAATATGGCTCC 58.599 43.478 0.00 0.00 0.00 4.70
613 2212 3.508793 CACATGATTGGAATATGGCTCCC 59.491 47.826 0.00 0.00 31.32 4.30
614 2213 2.566833 TGATTGGAATATGGCTCCCG 57.433 50.000 0.00 0.00 31.32 5.14
615 2214 1.774254 TGATTGGAATATGGCTCCCGT 59.226 47.619 0.00 0.00 31.32 5.28
616 2215 2.976185 TGATTGGAATATGGCTCCCGTA 59.024 45.455 0.00 0.00 31.32 4.02
617 2216 3.587061 TGATTGGAATATGGCTCCCGTAT 59.413 43.478 0.00 0.00 37.32 3.06
618 2217 3.417069 TTGGAATATGGCTCCCGTATG 57.583 47.619 0.00 0.00 36.03 2.39
619 2218 1.003118 TGGAATATGGCTCCCGTATGC 59.997 52.381 0.00 0.00 36.03 3.14
620 2219 1.003118 GGAATATGGCTCCCGTATGCA 59.997 52.381 0.00 0.00 36.03 3.96
621 2220 2.356125 GGAATATGGCTCCCGTATGCAT 60.356 50.000 3.79 3.79 36.03 3.96
622 2221 2.408271 ATATGGCTCCCGTATGCATG 57.592 50.000 10.16 0.00 34.73 4.06
623 2222 0.321564 TATGGCTCCCGTATGCATGC 60.322 55.000 11.82 11.82 0.00 4.06
624 2223 2.060567 ATGGCTCCCGTATGCATGCT 62.061 55.000 20.33 7.07 0.00 3.79
625 2224 1.371183 GGCTCCCGTATGCATGCTA 59.629 57.895 20.33 5.73 0.00 3.49
626 2225 0.036010 GGCTCCCGTATGCATGCTAT 60.036 55.000 20.33 12.94 0.00 2.97
627 2226 1.611673 GGCTCCCGTATGCATGCTATT 60.612 52.381 20.33 6.43 0.00 1.73
628 2227 1.734465 GCTCCCGTATGCATGCTATTC 59.266 52.381 20.33 7.80 0.00 1.75
629 2228 2.613977 GCTCCCGTATGCATGCTATTCT 60.614 50.000 20.33 1.06 0.00 2.40
630 2229 2.998670 CTCCCGTATGCATGCTATTCTG 59.001 50.000 20.33 3.92 0.00 3.02
631 2230 2.079158 CCCGTATGCATGCTATTCTGG 58.921 52.381 20.33 12.51 0.00 3.86
632 2231 2.079158 CCGTATGCATGCTATTCTGGG 58.921 52.381 20.33 7.21 0.00 4.45
633 2232 2.289631 CCGTATGCATGCTATTCTGGGA 60.290 50.000 20.33 0.00 0.00 4.37
634 2233 2.738846 CGTATGCATGCTATTCTGGGAC 59.261 50.000 20.33 4.25 0.00 4.46
635 2234 3.555795 CGTATGCATGCTATTCTGGGACT 60.556 47.826 20.33 0.00 0.00 3.85
636 2235 2.336945 TGCATGCTATTCTGGGACTG 57.663 50.000 20.33 0.00 0.00 3.51
637 2236 1.839354 TGCATGCTATTCTGGGACTGA 59.161 47.619 20.33 0.00 33.53 3.41
638 2237 2.158856 TGCATGCTATTCTGGGACTGAG 60.159 50.000 20.33 0.00 37.65 3.35
639 2238 2.809665 GCATGCTATTCTGGGACTGAGG 60.810 54.545 11.37 0.00 37.65 3.86
640 2239 2.550277 TGCTATTCTGGGACTGAGGA 57.450 50.000 0.00 0.00 37.65 3.71
641 2240 2.832838 TGCTATTCTGGGACTGAGGAA 58.167 47.619 0.00 0.00 37.65 3.36
642 2241 3.387962 TGCTATTCTGGGACTGAGGAAT 58.612 45.455 0.00 0.00 37.65 3.01
643 2242 3.135348 TGCTATTCTGGGACTGAGGAATG 59.865 47.826 0.00 0.00 37.65 2.67
644 2243 2.725221 ATTCTGGGACTGAGGAATGC 57.275 50.000 0.00 0.00 37.65 3.56
645 2244 0.620556 TTCTGGGACTGAGGAATGCC 59.379 55.000 0.00 0.00 37.65 4.40
657 2256 3.303351 AGGAATGCCTTTCTATGGTGG 57.697 47.619 0.00 0.00 43.90 4.61
658 2257 2.852449 AGGAATGCCTTTCTATGGTGGA 59.148 45.455 0.00 0.00 43.90 4.02
659 2258 2.952310 GGAATGCCTTTCTATGGTGGAC 59.048 50.000 0.00 0.00 34.56 4.02
660 2259 2.736670 ATGCCTTTCTATGGTGGACC 57.263 50.000 0.00 0.00 0.00 4.46
661 2260 0.623723 TGCCTTTCTATGGTGGACCC 59.376 55.000 0.00 0.00 34.29 4.46
662 2261 0.919710 GCCTTTCTATGGTGGACCCT 59.080 55.000 0.00 0.00 34.29 4.34
663 2262 1.408822 GCCTTTCTATGGTGGACCCTG 60.409 57.143 0.00 0.00 34.29 4.45
664 2263 2.196595 CCTTTCTATGGTGGACCCTGA 58.803 52.381 0.00 0.00 34.29 3.86
665 2264 2.171448 CCTTTCTATGGTGGACCCTGAG 59.829 54.545 0.00 0.00 34.29 3.35
666 2265 1.879575 TTCTATGGTGGACCCTGAGG 58.120 55.000 0.00 0.00 40.04 3.86
675 2274 3.182284 ACCCTGAGGTCGGACTCT 58.818 61.111 8.23 3.53 46.45 3.24
676 2275 1.465623 ACCCTGAGGTCGGACTCTT 59.534 57.895 8.23 0.00 46.45 2.85
677 2276 0.900647 ACCCTGAGGTCGGACTCTTG 60.901 60.000 8.23 2.03 46.45 3.02
678 2277 1.216710 CCTGAGGTCGGACTCTTGC 59.783 63.158 8.23 0.00 38.32 4.01
679 2278 1.254284 CCTGAGGTCGGACTCTTGCT 61.254 60.000 8.23 0.00 38.32 3.91
680 2279 0.108898 CTGAGGTCGGACTCTTGCTG 60.109 60.000 8.23 0.00 38.32 4.41
681 2280 1.446966 GAGGTCGGACTCTTGCTGC 60.447 63.158 8.23 0.00 34.65 5.25
685 2284 0.319900 GTCGGACTCTTGCTGCTTGA 60.320 55.000 0.00 0.00 0.00 3.02
687 2286 1.002430 TCGGACTCTTGCTGCTTGATT 59.998 47.619 0.00 0.00 0.00 2.57
706 2305 3.733024 TTTTCGATCGAACGGGATTTG 57.267 42.857 29.15 0.00 33.41 2.32
710 2309 0.746563 GATCGAACGGGATTTGGGCA 60.747 55.000 0.00 0.00 0.00 5.36
750 2349 3.611293 CGCTCTAGAGAACATGCGATCAT 60.611 47.826 24.24 0.00 45.15 2.45
752 2351 4.749099 GCTCTAGAGAACATGCGATCATTT 59.251 41.667 24.24 0.00 0.00 2.32
753 2352 5.333187 GCTCTAGAGAACATGCGATCATTTG 60.333 44.000 24.24 0.00 0.00 2.32
754 2353 5.052481 TCTAGAGAACATGCGATCATTTGG 58.948 41.667 0.00 0.00 0.00 3.28
755 2354 2.947652 AGAGAACATGCGATCATTTGGG 59.052 45.455 0.00 0.00 0.00 4.12
756 2355 1.406539 AGAACATGCGATCATTTGGGC 59.593 47.619 0.00 0.00 0.00 5.36
757 2356 1.134753 GAACATGCGATCATTTGGGCA 59.865 47.619 0.00 0.00 40.06 5.36
758 2357 0.457035 ACATGCGATCATTTGGGCAC 59.543 50.000 0.00 0.00 38.36 5.01
763 2373 1.374560 CGATCATTTGGGCACGGTTA 58.625 50.000 0.00 0.00 0.00 2.85
783 2393 8.301720 ACGGTTAAGAGAAATTTTACCAAATCC 58.698 33.333 0.00 0.00 30.80 3.01
784 2394 8.520351 CGGTTAAGAGAAATTTTACCAAATCCT 58.480 33.333 0.00 0.00 30.80 3.24
789 2399 9.807921 AAGAGAAATTTTACCAAATCCTAGTCA 57.192 29.630 0.00 0.00 30.80 3.41
790 2400 9.807921 AGAGAAATTTTACCAAATCCTAGTCAA 57.192 29.630 0.00 0.00 30.80 3.18
791 2401 9.841880 GAGAAATTTTACCAAATCCTAGTCAAC 57.158 33.333 0.00 0.00 30.80 3.18
806 2416 3.058160 AACATCAGCCACAGCCGC 61.058 61.111 0.00 0.00 41.25 6.53
870 2484 2.091665 CCAACCTCATGCCCTCCTAAAT 60.092 50.000 0.00 0.00 0.00 1.40
925 2539 1.999735 CACAAATACACGGACGAGCAT 59.000 47.619 0.00 0.00 0.00 3.79
927 2541 1.327460 CAAATACACGGACGAGCATGG 59.673 52.381 0.00 0.00 0.00 3.66
1992 3975 4.121669 TCGCTGCAGCTCGAGGAC 62.122 66.667 34.22 5.37 39.32 3.85
1996 3979 1.139308 CTGCAGCTCGAGGACTCAG 59.861 63.158 15.58 9.18 0.00 3.35
2040 4030 0.249120 CGTGCTACCCATGGACTGAA 59.751 55.000 15.22 0.00 0.00 3.02
2041 4031 1.338674 CGTGCTACCCATGGACTGAAA 60.339 52.381 15.22 0.00 0.00 2.69
2042 4032 2.084546 GTGCTACCCATGGACTGAAAC 58.915 52.381 15.22 0.28 0.00 2.78
2043 4033 1.702401 TGCTACCCATGGACTGAAACA 59.298 47.619 15.22 0.00 0.00 2.83
2044 4034 2.290260 TGCTACCCATGGACTGAAACAG 60.290 50.000 15.22 0.00 37.52 3.16
2045 4035 2.941415 GCTACCCATGGACTGAAACAGG 60.941 54.545 15.22 0.00 35.51 4.00
2046 4036 0.251341 ACCCATGGACTGAAACAGGC 60.251 55.000 15.22 0.00 39.10 4.85
2047 4037 0.251297 CCCATGGACTGAAACAGGCA 60.251 55.000 15.22 0.00 42.18 4.75
2048 4038 0.883833 CCATGGACTGAAACAGGCAC 59.116 55.000 5.56 0.00 42.18 5.01
2049 4039 1.608055 CATGGACTGAAACAGGCACA 58.392 50.000 6.93 3.14 42.18 4.57
2050 4040 1.955778 CATGGACTGAAACAGGCACAA 59.044 47.619 6.93 0.00 42.18 3.33
2051 4041 2.363306 TGGACTGAAACAGGCACAAT 57.637 45.000 6.93 0.00 42.18 2.71
2052 4042 3.500448 TGGACTGAAACAGGCACAATA 57.500 42.857 6.93 0.00 42.18 1.90
2053 4043 3.826524 TGGACTGAAACAGGCACAATAA 58.173 40.909 6.93 0.00 42.18 1.40
2054 4044 4.211125 TGGACTGAAACAGGCACAATAAA 58.789 39.130 6.93 0.00 42.18 1.40
2055 4045 4.646945 TGGACTGAAACAGGCACAATAAAA 59.353 37.500 6.93 0.00 42.18 1.52
2056 4046 5.127845 TGGACTGAAACAGGCACAATAAAAA 59.872 36.000 6.93 0.00 42.18 1.94
2057 4047 5.462068 GGACTGAAACAGGCACAATAAAAAC 59.538 40.000 6.93 0.00 42.18 2.43
2058 4048 5.971763 ACTGAAACAGGCACAATAAAAACA 58.028 33.333 0.00 0.00 35.51 2.83
2059 4049 6.581712 ACTGAAACAGGCACAATAAAAACAT 58.418 32.000 0.00 0.00 35.51 2.71
2060 4050 7.047271 ACTGAAACAGGCACAATAAAAACATT 58.953 30.769 0.00 0.00 35.51 2.71
2061 4051 7.011295 ACTGAAACAGGCACAATAAAAACATTG 59.989 33.333 0.00 0.00 37.56 2.82
2062 4052 5.671742 AACAGGCACAATAAAAACATTGC 57.328 34.783 0.00 0.00 39.13 3.56
2063 4053 3.740321 ACAGGCACAATAAAAACATTGCG 59.260 39.130 0.00 0.00 39.13 4.85
2064 4054 3.986572 CAGGCACAATAAAAACATTGCGA 59.013 39.130 0.00 0.00 39.13 5.10
2065 4055 4.626604 CAGGCACAATAAAAACATTGCGAT 59.373 37.500 0.00 0.00 39.13 4.58
2066 4056 4.864247 AGGCACAATAAAAACATTGCGATC 59.136 37.500 0.00 0.00 39.13 3.69
2067 4057 4.864247 GGCACAATAAAAACATTGCGATCT 59.136 37.500 0.00 0.00 39.13 2.75
2068 4058 6.033341 GGCACAATAAAAACATTGCGATCTA 58.967 36.000 0.00 0.00 39.13 1.98
2069 4059 6.697019 GGCACAATAAAAACATTGCGATCTAT 59.303 34.615 0.00 0.00 39.13 1.98
2070 4060 7.860373 GGCACAATAAAAACATTGCGATCTATA 59.140 33.333 0.00 0.00 39.13 1.31
2071 4061 9.398170 GCACAATAAAAACATTGCGATCTATAT 57.602 29.630 0.00 0.00 39.13 0.86
2096 4086 9.801873 ATTTTGAAAAGAAAATTTGTCTCGAGA 57.198 25.926 12.08 12.08 32.70 4.04
2097 4087 8.614994 TTTGAAAAGAAAATTTGTCTCGAGAC 57.385 30.769 33.76 33.76 44.97 3.36
2098 4088 6.725246 TGAAAAGAAAATTTGTCTCGAGACC 58.275 36.000 36.01 21.65 44.15 3.85
2099 4089 6.317642 TGAAAAGAAAATTTGTCTCGAGACCA 59.682 34.615 36.01 26.38 44.15 4.02
2100 4090 6.693315 AAAGAAAATTTGTCTCGAGACCAA 57.307 33.333 36.01 31.97 44.15 3.67
2101 4091 6.693315 AAGAAAATTTGTCTCGAGACCAAA 57.307 33.333 36.01 31.75 44.15 3.28
2102 4092 6.884280 AGAAAATTTGTCTCGAGACCAAAT 57.116 33.333 36.01 32.28 44.15 2.32
2103 4093 7.277174 AGAAAATTTGTCTCGAGACCAAATT 57.723 32.000 33.79 33.79 44.15 1.82
2104 4094 7.363431 AGAAAATTTGTCTCGAGACCAAATTC 58.637 34.615 35.99 33.04 44.15 2.17
2105 4095 6.633500 AAATTTGTCTCGAGACCAAATTCA 57.367 33.333 35.99 22.79 44.15 2.57
2106 4096 5.869753 ATTTGTCTCGAGACCAAATTCAG 57.130 39.130 36.01 0.00 44.15 3.02
2107 4097 4.336889 TTGTCTCGAGACCAAATTCAGT 57.663 40.909 36.01 0.00 44.15 3.41
2108 4098 4.336889 TGTCTCGAGACCAAATTCAGTT 57.663 40.909 36.01 0.00 44.15 3.16
2109 4099 4.703897 TGTCTCGAGACCAAATTCAGTTT 58.296 39.130 36.01 0.00 44.15 2.66
2110 4100 5.849510 TGTCTCGAGACCAAATTCAGTTTA 58.150 37.500 36.01 14.90 44.15 2.01
2111 4101 5.694910 TGTCTCGAGACCAAATTCAGTTTAC 59.305 40.000 36.01 12.12 44.15 2.01
2112 4102 5.694910 GTCTCGAGACCAAATTCAGTTTACA 59.305 40.000 31.24 0.00 39.07 2.41
2113 4103 5.926542 TCTCGAGACCAAATTCAGTTTACAG 59.073 40.000 12.08 0.00 0.00 2.74
2114 4104 4.451096 TCGAGACCAAATTCAGTTTACAGC 59.549 41.667 0.00 0.00 0.00 4.40
2115 4105 4.452455 CGAGACCAAATTCAGTTTACAGCT 59.548 41.667 0.00 0.00 0.00 4.24
2116 4106 5.389935 CGAGACCAAATTCAGTTTACAGCTC 60.390 44.000 0.00 0.00 0.00 4.09
2117 4107 4.452455 AGACCAAATTCAGTTTACAGCTCG 59.548 41.667 0.00 0.00 0.00 5.03
2118 4108 4.385825 ACCAAATTCAGTTTACAGCTCGA 58.614 39.130 0.00 0.00 0.00 4.04
2119 4109 4.452455 ACCAAATTCAGTTTACAGCTCGAG 59.548 41.667 8.45 8.45 0.00 4.04
2120 4110 4.690748 CCAAATTCAGTTTACAGCTCGAGA 59.309 41.667 18.75 0.00 0.00 4.04
2121 4111 5.179368 CCAAATTCAGTTTACAGCTCGAGAA 59.821 40.000 18.75 0.00 0.00 2.87
2122 4112 6.293407 CCAAATTCAGTTTACAGCTCGAGAAA 60.293 38.462 18.75 4.63 0.00 2.52
2123 4113 5.847670 ATTCAGTTTACAGCTCGAGAAAC 57.152 39.130 18.75 16.95 33.01 2.78
2124 4114 4.316205 TCAGTTTACAGCTCGAGAAACA 57.684 40.909 18.75 0.27 34.85 2.83
2125 4115 4.689071 TCAGTTTACAGCTCGAGAAACAA 58.311 39.130 18.75 7.42 34.85 2.83
2126 4116 5.113383 TCAGTTTACAGCTCGAGAAACAAA 58.887 37.500 18.75 7.56 34.85 2.83
2127 4117 5.583061 TCAGTTTACAGCTCGAGAAACAAAA 59.417 36.000 18.75 6.46 34.85 2.44
2128 4118 6.260050 TCAGTTTACAGCTCGAGAAACAAAAT 59.740 34.615 18.75 6.86 34.85 1.82
2129 4119 6.358030 CAGTTTACAGCTCGAGAAACAAAATG 59.642 38.462 18.75 14.69 34.85 2.32
2130 4120 3.273919 ACAGCTCGAGAAACAAAATGC 57.726 42.857 18.75 0.00 0.00 3.56
2131 4121 2.030805 ACAGCTCGAGAAACAAAATGCC 60.031 45.455 18.75 0.00 0.00 4.40
2132 4122 2.030893 CAGCTCGAGAAACAAAATGCCA 60.031 45.455 18.75 0.00 0.00 4.92
2133 4123 2.227388 AGCTCGAGAAACAAAATGCCAG 59.773 45.455 18.75 0.00 0.00 4.85
2134 4124 2.669391 GCTCGAGAAACAAAATGCCAGG 60.669 50.000 18.75 0.00 0.00 4.45
2135 4125 2.554032 CTCGAGAAACAAAATGCCAGGT 59.446 45.455 6.58 0.00 0.00 4.00
2136 4126 2.293122 TCGAGAAACAAAATGCCAGGTG 59.707 45.455 0.00 0.00 0.00 4.00
2137 4127 2.034558 CGAGAAACAAAATGCCAGGTGT 59.965 45.455 0.00 0.00 0.00 4.16
2138 4128 3.383761 GAGAAACAAAATGCCAGGTGTG 58.616 45.455 0.00 0.00 0.00 3.82
2139 4129 3.030291 AGAAACAAAATGCCAGGTGTGA 58.970 40.909 0.00 0.00 0.00 3.58
2140 4130 3.068590 AGAAACAAAATGCCAGGTGTGAG 59.931 43.478 0.00 0.00 0.00 3.51
2141 4131 2.071778 ACAAAATGCCAGGTGTGAGT 57.928 45.000 0.00 0.00 0.00 3.41
2142 4132 1.956477 ACAAAATGCCAGGTGTGAGTC 59.044 47.619 0.00 0.00 0.00 3.36
2143 4133 1.069022 CAAAATGCCAGGTGTGAGTCG 60.069 52.381 0.00 0.00 0.00 4.18
2144 4134 0.606401 AAATGCCAGGTGTGAGTCGG 60.606 55.000 0.00 0.00 0.00 4.79
2145 4135 1.480212 AATGCCAGGTGTGAGTCGGA 61.480 55.000 0.00 0.00 0.00 4.55
2146 4136 1.480212 ATGCCAGGTGTGAGTCGGAA 61.480 55.000 0.00 0.00 0.00 4.30
2147 4137 1.668151 GCCAGGTGTGAGTCGGAAC 60.668 63.158 0.00 0.00 0.00 3.62
2148 4138 2.050269 CCAGGTGTGAGTCGGAACT 58.950 57.895 0.00 0.00 38.88 3.01
2149 4139 0.393077 CCAGGTGTGAGTCGGAACTT 59.607 55.000 0.00 0.00 35.28 2.66
2150 4140 1.202651 CCAGGTGTGAGTCGGAACTTT 60.203 52.381 0.00 0.00 35.28 2.66
2151 4141 2.036733 CCAGGTGTGAGTCGGAACTTTA 59.963 50.000 0.00 0.00 35.28 1.85
2152 4142 3.306780 CCAGGTGTGAGTCGGAACTTTAT 60.307 47.826 0.00 0.00 35.28 1.40
2153 4143 4.081862 CCAGGTGTGAGTCGGAACTTTATA 60.082 45.833 0.00 0.00 35.28 0.98
2154 4144 4.863131 CAGGTGTGAGTCGGAACTTTATAC 59.137 45.833 0.00 0.00 35.28 1.47
2155 4145 4.525487 AGGTGTGAGTCGGAACTTTATACA 59.475 41.667 0.00 0.00 35.28 2.29
2156 4146 5.011329 AGGTGTGAGTCGGAACTTTATACAA 59.989 40.000 0.00 0.00 35.28 2.41
2157 4147 5.697633 GGTGTGAGTCGGAACTTTATACAAA 59.302 40.000 0.00 0.00 35.28 2.83
2158 4148 6.203338 GGTGTGAGTCGGAACTTTATACAAAA 59.797 38.462 0.00 0.00 35.28 2.44
2159 4149 7.067728 GTGTGAGTCGGAACTTTATACAAAAC 58.932 38.462 0.00 0.00 35.28 2.43
2160 4150 6.987992 TGTGAGTCGGAACTTTATACAAAACT 59.012 34.615 0.00 0.00 35.28 2.66
2161 4151 7.042321 TGTGAGTCGGAACTTTATACAAAACTG 60.042 37.037 0.00 0.00 35.28 3.16
2162 4152 7.170320 GTGAGTCGGAACTTTATACAAAACTGA 59.830 37.037 0.00 0.00 35.28 3.41
2163 4153 7.711772 TGAGTCGGAACTTTATACAAAACTGAA 59.288 33.333 0.00 0.00 35.28 3.02
2164 4154 8.441312 AGTCGGAACTTTATACAAAACTGAAA 57.559 30.769 0.00 0.00 28.74 2.69
2165 4155 9.063615 AGTCGGAACTTTATACAAAACTGAAAT 57.936 29.630 0.00 0.00 28.74 2.17
2166 4156 9.113876 GTCGGAACTTTATACAAAACTGAAATG 57.886 33.333 0.00 0.00 0.00 2.32
2167 4157 8.293867 TCGGAACTTTATACAAAACTGAAATGG 58.706 33.333 0.00 0.00 0.00 3.16
2168 4158 7.540745 CGGAACTTTATACAAAACTGAAATGGG 59.459 37.037 0.00 0.00 0.00 4.00
2169 4159 8.581578 GGAACTTTATACAAAACTGAAATGGGA 58.418 33.333 0.00 0.00 0.00 4.37
2175 4165 7.671495 ATACAAAACTGAAATGGGATTTTGC 57.329 32.000 7.47 0.00 41.70 3.68
2176 4166 5.435291 ACAAAACTGAAATGGGATTTTGCA 58.565 33.333 7.47 0.00 41.70 4.08
2177 4167 5.296531 ACAAAACTGAAATGGGATTTTGCAC 59.703 36.000 7.47 0.00 41.70 4.57
2178 4168 4.686191 AACTGAAATGGGATTTTGCACA 57.314 36.364 0.00 0.00 31.47 4.57
2179 4169 4.261578 ACTGAAATGGGATTTTGCACAG 57.738 40.909 0.00 0.00 31.47 3.66
2180 4170 3.896888 ACTGAAATGGGATTTTGCACAGA 59.103 39.130 0.00 0.00 31.47 3.41
2181 4171 4.021719 ACTGAAATGGGATTTTGCACAGAG 60.022 41.667 0.00 0.00 31.47 3.35
2182 4172 4.151121 TGAAATGGGATTTTGCACAGAGA 58.849 39.130 0.00 0.00 31.47 3.10
2183 4173 4.773674 TGAAATGGGATTTTGCACAGAGAT 59.226 37.500 0.00 0.00 31.47 2.75
2184 4174 5.246656 TGAAATGGGATTTTGCACAGAGATT 59.753 36.000 0.00 0.00 31.47 2.40
2185 4175 4.996788 ATGGGATTTTGCACAGAGATTC 57.003 40.909 0.00 0.00 0.00 2.52
2186 4176 3.765381 TGGGATTTTGCACAGAGATTCA 58.235 40.909 0.00 0.00 0.00 2.57
2187 4177 4.346730 TGGGATTTTGCACAGAGATTCAT 58.653 39.130 0.00 0.00 0.00 2.57
2188 4178 5.508567 TGGGATTTTGCACAGAGATTCATA 58.491 37.500 0.00 0.00 0.00 2.15
2189 4179 5.591472 TGGGATTTTGCACAGAGATTCATAG 59.409 40.000 0.00 0.00 0.00 2.23
2190 4180 5.009410 GGGATTTTGCACAGAGATTCATAGG 59.991 44.000 0.00 0.00 0.00 2.57
2191 4181 5.009410 GGATTTTGCACAGAGATTCATAGGG 59.991 44.000 0.00 0.00 0.00 3.53
2192 4182 4.842531 TTTGCACAGAGATTCATAGGGA 57.157 40.909 0.00 0.00 0.00 4.20
2193 4183 5.378230 TTTGCACAGAGATTCATAGGGAT 57.622 39.130 0.00 0.00 0.00 3.85
2194 4184 5.378230 TTGCACAGAGATTCATAGGGATT 57.622 39.130 0.00 0.00 0.00 3.01
2195 4185 5.378230 TGCACAGAGATTCATAGGGATTT 57.622 39.130 0.00 0.00 0.00 2.17
2196 4186 5.759059 TGCACAGAGATTCATAGGGATTTT 58.241 37.500 0.00 0.00 0.00 1.82
2197 4187 6.189859 TGCACAGAGATTCATAGGGATTTTT 58.810 36.000 0.00 0.00 0.00 1.94
2198 4188 7.345691 TGCACAGAGATTCATAGGGATTTTTA 58.654 34.615 0.00 0.00 0.00 1.52
2199 4189 8.000709 TGCACAGAGATTCATAGGGATTTTTAT 58.999 33.333 0.00 0.00 0.00 1.40
2200 4190 8.854117 GCACAGAGATTCATAGGGATTTTTATT 58.146 33.333 0.00 0.00 0.00 1.40
2231 4221 7.841282 TTTTGGTTAATCAAATAGTGTGGGA 57.159 32.000 14.46 0.00 36.63 4.37
2232 4222 7.841282 TTTGGTTAATCAAATAGTGTGGGAA 57.159 32.000 9.86 0.00 32.39 3.97
2233 4223 8.429237 TTTGGTTAATCAAATAGTGTGGGAAT 57.571 30.769 9.86 0.00 32.39 3.01
2234 4224 9.535170 TTTGGTTAATCAAATAGTGTGGGAATA 57.465 29.630 9.86 0.00 32.39 1.75
2235 4225 8.746052 TGGTTAATCAAATAGTGTGGGAATAG 57.254 34.615 0.00 0.00 0.00 1.73
2236 4226 8.553153 TGGTTAATCAAATAGTGTGGGAATAGA 58.447 33.333 0.00 0.00 0.00 1.98
2237 4227 9.574516 GGTTAATCAAATAGTGTGGGAATAGAT 57.425 33.333 0.00 0.00 0.00 1.98
2240 4230 8.915057 AATCAAATAGTGTGGGAATAGATGAG 57.085 34.615 0.00 0.00 0.00 2.90
2241 4231 7.675161 TCAAATAGTGTGGGAATAGATGAGA 57.325 36.000 0.00 0.00 0.00 3.27
2242 4232 7.500992 TCAAATAGTGTGGGAATAGATGAGAC 58.499 38.462 0.00 0.00 0.00 3.36
2243 4233 7.345653 TCAAATAGTGTGGGAATAGATGAGACT 59.654 37.037 0.00 0.00 0.00 3.24
2244 4234 7.682787 AATAGTGTGGGAATAGATGAGACTT 57.317 36.000 0.00 0.00 0.00 3.01
2245 4235 5.606348 AGTGTGGGAATAGATGAGACTTC 57.394 43.478 0.00 0.00 0.00 3.01
2246 4236 4.098654 AGTGTGGGAATAGATGAGACTTCG 59.901 45.833 0.00 0.00 0.00 3.79
2247 4237 4.023980 TGTGGGAATAGATGAGACTTCGT 58.976 43.478 0.00 0.00 0.00 3.85
2248 4238 4.466370 TGTGGGAATAGATGAGACTTCGTT 59.534 41.667 0.00 0.00 0.00 3.85
2249 4239 5.655090 TGTGGGAATAGATGAGACTTCGTTA 59.345 40.000 0.00 0.00 0.00 3.18
2250 4240 6.153851 TGTGGGAATAGATGAGACTTCGTTAA 59.846 38.462 0.00 0.00 0.00 2.01
2251 4241 7.147724 TGTGGGAATAGATGAGACTTCGTTAAT 60.148 37.037 0.00 0.00 0.00 1.40
2252 4242 7.711339 GTGGGAATAGATGAGACTTCGTTAATT 59.289 37.037 0.00 0.00 0.00 1.40
2253 4243 7.926555 TGGGAATAGATGAGACTTCGTTAATTC 59.073 37.037 0.00 0.00 0.00 2.17
2254 4244 8.145122 GGGAATAGATGAGACTTCGTTAATTCT 58.855 37.037 0.00 0.00 31.29 2.40
2255 4245 9.187455 GGAATAGATGAGACTTCGTTAATTCTC 57.813 37.037 0.00 0.00 40.22 2.87
2262 4252 8.507524 TGAGACTTCGTTAATTCTCATCTAGA 57.492 34.615 0.00 0.00 42.94 2.43
2263 4253 9.126151 TGAGACTTCGTTAATTCTCATCTAGAT 57.874 33.333 0.00 0.00 42.94 1.98
2264 4254 9.393249 GAGACTTCGTTAATTCTCATCTAGATG 57.607 37.037 24.32 24.32 39.81 2.90
2265 4255 9.126151 AGACTTCGTTAATTCTCATCTAGATGA 57.874 33.333 29.17 29.17 44.83 2.92
2279 4269 7.964624 TCATCTAGATGAGAATGAGCAAATCT 58.035 34.615 27.93 0.00 42.42 2.40
2280 4270 7.873505 TCATCTAGATGAGAATGAGCAAATCTG 59.126 37.037 27.93 1.46 42.42 2.90
2281 4271 7.357429 TCTAGATGAGAATGAGCAAATCTGA 57.643 36.000 0.00 0.00 0.00 3.27
2282 4272 7.789026 TCTAGATGAGAATGAGCAAATCTGAA 58.211 34.615 0.00 0.00 0.00 3.02
2283 4273 8.430431 TCTAGATGAGAATGAGCAAATCTGAAT 58.570 33.333 0.00 0.00 0.00 2.57
2284 4274 7.883391 AGATGAGAATGAGCAAATCTGAATT 57.117 32.000 0.00 0.00 0.00 2.17
2285 4275 8.975663 AGATGAGAATGAGCAAATCTGAATTA 57.024 30.769 0.00 0.00 0.00 1.40
2286 4276 9.404848 AGATGAGAATGAGCAAATCTGAATTAA 57.595 29.630 0.00 0.00 0.00 1.40
2297 4287 9.559958 AGCAAATCTGAATTAAAATCTGTTACG 57.440 29.630 0.00 0.00 0.00 3.18
2298 4288 9.554724 GCAAATCTGAATTAAAATCTGTTACGA 57.445 29.630 0.00 0.00 0.00 3.43
2309 4299 7.428562 AAAATCTGTTACGAATAGTACGTCG 57.571 36.000 13.00 13.00 43.62 5.12
2317 4307 3.933031 CGAATAGTACGTCGTTAGCACT 58.067 45.455 1.78 3.24 32.61 4.40
2318 4308 5.070720 CGAATAGTACGTCGTTAGCACTA 57.929 43.478 1.78 5.67 32.61 2.74
2319 4309 4.895116 CGAATAGTACGTCGTTAGCACTAC 59.105 45.833 1.78 0.00 32.61 2.73
2320 4310 5.276584 CGAATAGTACGTCGTTAGCACTACT 60.277 44.000 1.78 1.22 32.61 2.57
2321 4311 5.649602 ATAGTACGTCGTTAGCACTACTC 57.350 43.478 1.78 0.00 0.00 2.59
2322 4312 3.329386 AGTACGTCGTTAGCACTACTCA 58.671 45.455 1.78 0.00 0.00 3.41
2323 4313 3.937706 AGTACGTCGTTAGCACTACTCAT 59.062 43.478 1.78 0.00 0.00 2.90
2324 4314 5.111989 AGTACGTCGTTAGCACTACTCATA 58.888 41.667 1.78 0.00 0.00 2.15
2325 4315 4.270178 ACGTCGTTAGCACTACTCATAC 57.730 45.455 0.00 0.00 0.00 2.39
2326 4316 3.937706 ACGTCGTTAGCACTACTCATACT 59.062 43.478 0.00 0.00 0.00 2.12
2327 4317 4.033817 ACGTCGTTAGCACTACTCATACTC 59.966 45.833 0.00 0.00 0.00 2.59
2421 4411 1.814394 GACGGAAAACCGGGCTAAAAT 59.186 47.619 6.32 0.00 37.53 1.82
2429 4419 3.107642 ACCGGGCTAAAATCGATACAG 57.892 47.619 6.32 0.00 0.00 2.74
2493 4483 0.593128 ACATGAAACAGAAGCCACGC 59.407 50.000 0.00 0.00 0.00 5.34
2616 4606 1.264288 CAAAAGAGCACCTCGAACACC 59.736 52.381 0.00 0.00 35.36 4.16
2671 4681 2.414559 CCATCATCGTTGCCAAACAGAC 60.415 50.000 0.00 0.00 35.94 3.51
2778 4788 3.532155 GGCTCCGAGACGATGCCT 61.532 66.667 15.36 0.00 40.00 4.75
2787 4797 0.324738 AGACGATGCCTCCAAGGAGA 60.325 55.000 17.57 0.00 44.53 3.71
2804 4814 3.892588 AGGAGAAGAAAGACACGAAGACT 59.107 43.478 0.00 0.00 0.00 3.24
2826 4958 2.106131 CATCGCCCGATCCAACGA 59.894 61.111 0.00 1.69 39.11 3.85
2964 5705 1.077429 AGCAAGGATTTCTCCCGGC 60.077 57.895 0.00 0.00 43.21 6.13
2965 5706 1.077429 GCAAGGATTTCTCCCGGCT 60.077 57.895 0.00 0.00 43.21 5.52
2966 5707 0.180406 GCAAGGATTTCTCCCGGCTA 59.820 55.000 0.00 0.00 43.21 3.93
2969 5710 1.415200 AGGATTTCTCCCGGCTACTC 58.585 55.000 0.00 0.00 43.21 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.351465 GCGTCAAATGACATCTCTTTTCCTA 59.649 40.000 13.51 0.00 44.99 2.94
112 116 6.208599 TGGTTTGTAGGAATGGATTTCTGTTC 59.791 38.462 0.00 0.00 34.56 3.18
115 119 6.588719 TTGGTTTGTAGGAATGGATTTCTG 57.411 37.500 0.00 0.00 34.56 3.02
118 122 7.610580 TCTTTTGGTTTGTAGGAATGGATTT 57.389 32.000 0.00 0.00 0.00 2.17
141 145 4.830826 AGGGAAGAAATCGTTTGTGTTC 57.169 40.909 0.00 0.00 0.00 3.18
144 148 5.682943 TGTTAGGGAAGAAATCGTTTGTG 57.317 39.130 0.00 0.00 0.00 3.33
145 149 6.702716 TTTGTTAGGGAAGAAATCGTTTGT 57.297 33.333 0.00 0.00 0.00 2.83
146 150 8.487176 CAATTTTGTTAGGGAAGAAATCGTTTG 58.513 33.333 0.00 0.00 28.80 2.93
150 154 6.389906 AGCAATTTTGTTAGGGAAGAAATCG 58.610 36.000 0.00 0.00 28.80 3.34
151 155 9.521503 GATAGCAATTTTGTTAGGGAAGAAATC 57.478 33.333 0.00 0.00 28.80 2.17
153 157 7.673926 AGGATAGCAATTTTGTTAGGGAAGAAA 59.326 33.333 0.00 0.00 0.00 2.52
156 160 7.410120 AAGGATAGCAATTTTGTTAGGGAAG 57.590 36.000 0.00 0.00 0.00 3.46
172 176 8.841754 AGGTATATAGGGTTCTAAAGGATAGC 57.158 38.462 0.00 0.00 0.00 2.97
206 210 7.859325 TGAGATAAATAAGTTAGTGGGCAAC 57.141 36.000 0.00 0.00 0.00 4.17
264 270 3.719368 AGGTGGGCCTTATCCTACTTA 57.281 47.619 4.53 0.00 44.18 2.24
276 282 1.259840 ATTGCATGTTGAGGTGGGCC 61.260 55.000 0.00 0.00 0.00 5.80
291 297 5.526479 TGAGTCTTTCTCTATGCATGATTGC 59.474 40.000 10.16 0.00 44.83 3.56
300 306 5.970592 TGGTGTGATGAGTCTTTCTCTATG 58.029 41.667 0.00 0.00 43.13 2.23
313 319 2.492881 GCATGGTTGAATGGTGTGATGA 59.507 45.455 0.00 0.00 0.00 2.92
316 322 1.992538 TGCATGGTTGAATGGTGTGA 58.007 45.000 0.00 0.00 0.00 3.58
449 455 5.195001 TGGTTGATGAAAAGTTAGGTTGC 57.805 39.130 0.00 0.00 0.00 4.17
470 476 9.796062 GCACAATTACAAAAACATATTGTCTTG 57.204 29.630 0.00 10.53 41.11 3.02
478 592 9.906660 CTAGGAAAGCACAATTACAAAAACATA 57.093 29.630 0.00 0.00 0.00 2.29
484 598 8.458573 TTCTTCTAGGAAAGCACAATTACAAA 57.541 30.769 0.00 0.00 0.00 2.83
487 601 7.907214 TCTTCTTCTAGGAAAGCACAATTAC 57.093 36.000 0.00 0.00 0.00 1.89
577 2176 9.817809 TTCCAATCATGTGAACTACTAGTAATC 57.182 33.333 3.76 6.27 0.00 1.75
581 2180 9.770097 CATATTCCAATCATGTGAACTACTAGT 57.230 33.333 0.00 0.00 0.00 2.57
593 2192 2.751259 CGGGAGCCATATTCCAATCATG 59.249 50.000 0.00 0.00 36.40 3.07
595 2194 1.774254 ACGGGAGCCATATTCCAATCA 59.226 47.619 0.00 0.00 36.40 2.57
597 2196 3.873801 GCATACGGGAGCCATATTCCAAT 60.874 47.826 0.00 0.00 36.40 3.16
598 2197 2.552155 GCATACGGGAGCCATATTCCAA 60.552 50.000 0.00 0.00 36.40 3.53
599 2198 1.003118 GCATACGGGAGCCATATTCCA 59.997 52.381 0.00 0.00 36.40 3.53
600 2199 1.003118 TGCATACGGGAGCCATATTCC 59.997 52.381 0.00 0.00 0.00 3.01
601 2200 2.472695 TGCATACGGGAGCCATATTC 57.527 50.000 0.00 0.00 0.00 1.75
602 2201 2.715046 CATGCATACGGGAGCCATATT 58.285 47.619 0.00 0.00 0.00 1.28
603 2202 1.679944 GCATGCATACGGGAGCCATAT 60.680 52.381 14.21 0.00 0.00 1.78
604 2203 0.321564 GCATGCATACGGGAGCCATA 60.322 55.000 14.21 0.00 0.00 2.74
605 2204 1.601759 GCATGCATACGGGAGCCAT 60.602 57.895 14.21 0.00 0.00 4.40
606 2205 1.406860 TAGCATGCATACGGGAGCCA 61.407 55.000 21.98 0.00 0.00 4.75
607 2206 0.036010 ATAGCATGCATACGGGAGCC 60.036 55.000 21.98 0.00 0.00 4.70
608 2207 1.734465 GAATAGCATGCATACGGGAGC 59.266 52.381 21.98 0.00 0.00 4.70
609 2208 2.998670 CAGAATAGCATGCATACGGGAG 59.001 50.000 21.98 0.00 0.00 4.30
610 2209 2.289631 CCAGAATAGCATGCATACGGGA 60.290 50.000 21.98 0.00 0.00 5.14
611 2210 2.079158 CCAGAATAGCATGCATACGGG 58.921 52.381 21.98 13.63 0.00 5.28
612 2211 2.079158 CCCAGAATAGCATGCATACGG 58.921 52.381 21.98 11.78 0.00 4.02
613 2212 2.738846 GTCCCAGAATAGCATGCATACG 59.261 50.000 21.98 2.63 0.00 3.06
614 2213 3.750130 CAGTCCCAGAATAGCATGCATAC 59.250 47.826 21.98 8.20 0.00 2.39
615 2214 3.647590 TCAGTCCCAGAATAGCATGCATA 59.352 43.478 21.98 9.79 0.00 3.14
616 2215 2.440627 TCAGTCCCAGAATAGCATGCAT 59.559 45.455 21.98 8.63 0.00 3.96
617 2216 1.839354 TCAGTCCCAGAATAGCATGCA 59.161 47.619 21.98 6.36 0.00 3.96
618 2217 2.492012 CTCAGTCCCAGAATAGCATGC 58.508 52.381 10.51 10.51 0.00 4.06
619 2218 2.702478 TCCTCAGTCCCAGAATAGCATG 59.298 50.000 0.00 0.00 0.00 4.06
620 2219 3.051940 TCCTCAGTCCCAGAATAGCAT 57.948 47.619 0.00 0.00 0.00 3.79
621 2220 2.550277 TCCTCAGTCCCAGAATAGCA 57.450 50.000 0.00 0.00 0.00 3.49
622 2221 3.737850 CATTCCTCAGTCCCAGAATAGC 58.262 50.000 0.00 0.00 0.00 2.97
623 2222 3.495806 GGCATTCCTCAGTCCCAGAATAG 60.496 52.174 0.00 0.00 0.00 1.73
624 2223 2.439507 GGCATTCCTCAGTCCCAGAATA 59.560 50.000 0.00 0.00 0.00 1.75
625 2224 1.213926 GGCATTCCTCAGTCCCAGAAT 59.786 52.381 0.00 0.00 0.00 2.40
626 2225 0.620556 GGCATTCCTCAGTCCCAGAA 59.379 55.000 0.00 0.00 0.00 3.02
627 2226 0.252881 AGGCATTCCTCAGTCCCAGA 60.253 55.000 0.00 0.00 38.72 3.86
628 2227 0.622665 AAGGCATTCCTCAGTCCCAG 59.377 55.000 0.00 0.00 43.40 4.45
629 2228 1.004745 GAAAGGCATTCCTCAGTCCCA 59.995 52.381 0.00 0.00 43.40 4.37
630 2229 1.283321 AGAAAGGCATTCCTCAGTCCC 59.717 52.381 0.00 0.00 43.40 4.46
631 2230 2.797177 AGAAAGGCATTCCTCAGTCC 57.203 50.000 0.00 0.00 43.40 3.85
632 2231 4.133078 CCATAGAAAGGCATTCCTCAGTC 58.867 47.826 0.00 0.00 43.40 3.51
633 2232 3.525199 ACCATAGAAAGGCATTCCTCAGT 59.475 43.478 0.00 0.00 43.40 3.41
634 2233 3.881688 CACCATAGAAAGGCATTCCTCAG 59.118 47.826 0.00 0.00 43.40 3.35
635 2234 3.371917 CCACCATAGAAAGGCATTCCTCA 60.372 47.826 0.00 0.00 43.40 3.86
636 2235 3.117888 TCCACCATAGAAAGGCATTCCTC 60.118 47.826 0.00 0.00 43.40 3.71
637 2236 6.464389 GGTCCACCATAGAAAGGCATTCCT 62.464 50.000 0.00 0.00 39.31 3.36
638 2237 2.952310 GTCCACCATAGAAAGGCATTCC 59.048 50.000 0.00 0.00 38.94 3.01
639 2238 2.952310 GGTCCACCATAGAAAGGCATTC 59.048 50.000 0.00 0.00 35.61 2.67
640 2239 2.358195 GGGTCCACCATAGAAAGGCATT 60.358 50.000 0.00 0.00 39.85 3.56
641 2240 1.215423 GGGTCCACCATAGAAAGGCAT 59.785 52.381 0.00 0.00 39.85 4.40
642 2241 0.623723 GGGTCCACCATAGAAAGGCA 59.376 55.000 0.00 0.00 39.85 4.75
643 2242 0.919710 AGGGTCCACCATAGAAAGGC 59.080 55.000 0.00 0.00 43.89 4.35
644 2243 2.171448 CTCAGGGTCCACCATAGAAAGG 59.829 54.545 0.00 0.00 43.89 3.11
645 2244 2.171448 CCTCAGGGTCCACCATAGAAAG 59.829 54.545 0.00 0.00 43.89 2.62
646 2245 2.196595 CCTCAGGGTCCACCATAGAAA 58.803 52.381 0.00 0.00 43.89 2.52
647 2246 1.080498 ACCTCAGGGTCCACCATAGAA 59.920 52.381 0.00 0.00 43.38 2.10
648 2247 0.716591 ACCTCAGGGTCCACCATAGA 59.283 55.000 0.00 0.00 43.38 1.98
649 2248 3.324246 ACCTCAGGGTCCACCATAG 57.676 57.895 0.00 0.00 43.38 2.23
659 2258 1.893786 CAAGAGTCCGACCTCAGGG 59.106 63.158 0.00 0.00 33.75 4.45
660 2259 1.216710 GCAAGAGTCCGACCTCAGG 59.783 63.158 0.00 0.00 33.75 3.86
661 2260 0.108898 CAGCAAGAGTCCGACCTCAG 60.109 60.000 0.00 0.00 33.75 3.35
662 2261 1.967535 CAGCAAGAGTCCGACCTCA 59.032 57.895 0.00 0.00 33.75 3.86
663 2262 1.446966 GCAGCAAGAGTCCGACCTC 60.447 63.158 0.00 0.00 0.00 3.85
664 2263 1.476007 AAGCAGCAAGAGTCCGACCT 61.476 55.000 0.00 0.00 0.00 3.85
665 2264 1.004440 AAGCAGCAAGAGTCCGACC 60.004 57.895 0.00 0.00 0.00 4.79
666 2265 0.319900 TCAAGCAGCAAGAGTCCGAC 60.320 55.000 0.00 0.00 0.00 4.79
667 2266 0.610174 ATCAAGCAGCAAGAGTCCGA 59.390 50.000 0.00 0.00 0.00 4.55
668 2267 1.446907 AATCAAGCAGCAAGAGTCCG 58.553 50.000 0.00 0.00 0.00 4.79
669 2268 3.669023 CGAAAATCAAGCAGCAAGAGTCC 60.669 47.826 0.00 0.00 0.00 3.85
670 2269 3.187227 TCGAAAATCAAGCAGCAAGAGTC 59.813 43.478 0.00 0.00 0.00 3.36
671 2270 3.141398 TCGAAAATCAAGCAGCAAGAGT 58.859 40.909 0.00 0.00 0.00 3.24
672 2271 3.818961 TCGAAAATCAAGCAGCAAGAG 57.181 42.857 0.00 0.00 0.00 2.85
673 2272 3.181517 CGATCGAAAATCAAGCAGCAAGA 60.182 43.478 10.26 0.00 0.00 3.02
674 2273 3.096461 CGATCGAAAATCAAGCAGCAAG 58.904 45.455 10.26 0.00 0.00 4.01
675 2274 2.741517 TCGATCGAAAATCAAGCAGCAA 59.258 40.909 16.99 0.00 0.00 3.91
676 2275 2.345876 TCGATCGAAAATCAAGCAGCA 58.654 42.857 16.99 0.00 0.00 4.41
677 2276 3.094294 GTTCGATCGAAAATCAAGCAGC 58.906 45.455 30.61 11.55 35.75 5.25
678 2277 3.337130 CGTTCGATCGAAAATCAAGCAG 58.663 45.455 30.61 10.60 35.75 4.24
679 2278 2.093625 CCGTTCGATCGAAAATCAAGCA 59.906 45.455 30.61 4.05 35.75 3.91
680 2279 2.536928 CCCGTTCGATCGAAAATCAAGC 60.537 50.000 30.61 15.85 35.75 4.01
681 2280 2.927477 TCCCGTTCGATCGAAAATCAAG 59.073 45.455 30.61 16.30 35.75 3.02
685 2284 3.064820 CCAAATCCCGTTCGATCGAAAAT 59.935 43.478 30.61 18.34 35.75 1.82
687 2286 2.004017 CCAAATCCCGTTCGATCGAAA 58.996 47.619 30.61 16.63 35.75 3.46
706 2305 2.156098 TCTGTATTTTGAACCGTGCCC 58.844 47.619 0.00 0.00 0.00 5.36
710 2309 3.135994 AGCGTTCTGTATTTTGAACCGT 58.864 40.909 0.00 0.00 39.30 4.83
750 2349 2.642154 TTCTCTTAACCGTGCCCAAA 57.358 45.000 0.00 0.00 0.00 3.28
752 2351 2.871096 ATTTCTCTTAACCGTGCCCA 57.129 45.000 0.00 0.00 0.00 5.36
753 2352 4.514781 AAAATTTCTCTTAACCGTGCCC 57.485 40.909 0.00 0.00 0.00 5.36
754 2353 5.048573 TGGTAAAATTTCTCTTAACCGTGCC 60.049 40.000 0.00 0.00 0.00 5.01
755 2354 6.004408 TGGTAAAATTTCTCTTAACCGTGC 57.996 37.500 0.00 0.00 0.00 5.34
756 2355 9.124807 GATTTGGTAAAATTTCTCTTAACCGTG 57.875 33.333 0.00 0.00 36.10 4.94
757 2356 8.301720 GGATTTGGTAAAATTTCTCTTAACCGT 58.698 33.333 0.00 0.00 36.10 4.83
758 2357 8.520351 AGGATTTGGTAAAATTTCTCTTAACCG 58.480 33.333 0.00 0.00 36.10 4.44
763 2373 9.807921 TGACTAGGATTTGGTAAAATTTCTCTT 57.192 29.630 0.00 0.00 36.10 2.85
783 2393 2.005451 GCTGTGGCTGATGTTGACTAG 58.995 52.381 0.00 0.00 35.22 2.57
784 2394 1.339055 GGCTGTGGCTGATGTTGACTA 60.339 52.381 0.00 0.00 38.73 2.59
785 2395 0.607489 GGCTGTGGCTGATGTTGACT 60.607 55.000 0.00 0.00 38.73 3.41
786 2396 1.878775 GGCTGTGGCTGATGTTGAC 59.121 57.895 0.00 0.00 38.73 3.18
787 2397 4.402851 GGCTGTGGCTGATGTTGA 57.597 55.556 0.00 0.00 38.73 3.18
870 2484 2.093869 GTCTGGTAATGGTTAGCGTGGA 60.094 50.000 0.00 0.00 36.45 4.02
925 2539 2.605601 TCTGCTCTGCTCTGCCCA 60.606 61.111 0.00 0.00 0.00 5.36
927 2541 2.512057 GCTCTGCTCTGCTCTGCC 60.512 66.667 0.00 0.00 0.00 4.85
1075 2692 1.000163 GTCCGTCTGTGTGACTGTGAT 60.000 52.381 0.00 0.00 43.25 3.06
1329 2946 2.043248 TCCTGGTACCCGAGCTCC 60.043 66.667 10.07 0.00 0.00 4.70
1996 3979 2.361104 TGGAATGGAAGCACCGGC 60.361 61.111 0.00 0.00 42.61 6.13
2040 4030 4.210955 CGCAATGTTTTTATTGTGCCTGTT 59.789 37.500 0.00 0.00 40.40 3.16
2041 4031 3.740321 CGCAATGTTTTTATTGTGCCTGT 59.260 39.130 0.00 0.00 40.40 4.00
2042 4032 3.986572 TCGCAATGTTTTTATTGTGCCTG 59.013 39.130 7.06 0.00 44.27 4.85
2043 4033 4.250116 TCGCAATGTTTTTATTGTGCCT 57.750 36.364 7.06 0.00 44.27 4.75
2044 4034 4.864247 AGATCGCAATGTTTTTATTGTGCC 59.136 37.500 7.06 3.03 44.27 5.01
2045 4035 7.684062 ATAGATCGCAATGTTTTTATTGTGC 57.316 32.000 7.06 0.00 44.27 4.57
2070 4060 9.801873 TCTCGAGACAAATTTTCTTTTCAAAAT 57.198 25.926 12.08 0.00 37.53 1.82
2071 4061 9.072294 GTCTCGAGACAAATTTTCTTTTCAAAA 57.928 29.630 34.97 0.00 44.18 2.44
2072 4062 7.700656 GGTCTCGAGACAAATTTTCTTTTCAAA 59.299 33.333 38.52 0.43 46.47 2.69
2073 4063 7.148154 TGGTCTCGAGACAAATTTTCTTTTCAA 60.148 33.333 38.52 5.48 46.47 2.69
2074 4064 6.317642 TGGTCTCGAGACAAATTTTCTTTTCA 59.682 34.615 38.52 22.96 46.47 2.69
2075 4065 6.725246 TGGTCTCGAGACAAATTTTCTTTTC 58.275 36.000 38.52 20.97 46.47 2.29
2076 4066 6.693315 TGGTCTCGAGACAAATTTTCTTTT 57.307 33.333 38.52 0.00 46.47 2.27
2077 4067 6.693315 TTGGTCTCGAGACAAATTTTCTTT 57.307 33.333 38.52 0.00 46.47 2.52
2078 4068 6.693315 TTTGGTCTCGAGACAAATTTTCTT 57.307 33.333 38.52 0.00 46.47 2.52
2079 4069 6.884280 ATTTGGTCTCGAGACAAATTTTCT 57.116 33.333 38.52 20.88 46.47 2.52
2080 4070 7.138736 TGAATTTGGTCTCGAGACAAATTTTC 58.861 34.615 36.12 33.25 46.47 2.29
2081 4071 7.038154 TGAATTTGGTCTCGAGACAAATTTT 57.962 32.000 36.12 30.20 46.47 1.82
2082 4072 6.263168 ACTGAATTTGGTCTCGAGACAAATTT 59.737 34.615 36.12 33.43 46.47 1.82
2083 4073 5.765182 ACTGAATTTGGTCTCGAGACAAATT 59.235 36.000 36.27 36.27 46.47 1.82
2084 4074 5.308825 ACTGAATTTGGTCTCGAGACAAAT 58.691 37.500 38.52 33.37 46.47 2.32
2085 4075 4.703897 ACTGAATTTGGTCTCGAGACAAA 58.296 39.130 38.52 33.50 46.47 2.83
2086 4076 4.336889 ACTGAATTTGGTCTCGAGACAA 57.663 40.909 38.52 30.17 46.47 3.18
2087 4077 4.336889 AACTGAATTTGGTCTCGAGACA 57.663 40.909 38.52 25.15 46.47 3.41
2088 4078 5.694910 TGTAAACTGAATTTGGTCTCGAGAC 59.305 40.000 32.96 32.96 44.04 3.36
2089 4079 5.849510 TGTAAACTGAATTTGGTCTCGAGA 58.150 37.500 12.08 12.08 0.00 4.04
2090 4080 5.389935 GCTGTAAACTGAATTTGGTCTCGAG 60.390 44.000 5.93 5.93 0.00 4.04
2091 4081 4.451096 GCTGTAAACTGAATTTGGTCTCGA 59.549 41.667 0.00 0.00 0.00 4.04
2092 4082 4.452455 AGCTGTAAACTGAATTTGGTCTCG 59.548 41.667 0.00 0.00 0.00 4.04
2093 4083 5.389935 CGAGCTGTAAACTGAATTTGGTCTC 60.390 44.000 0.00 0.00 0.00 3.36
2094 4084 4.452455 CGAGCTGTAAACTGAATTTGGTCT 59.548 41.667 0.00 0.00 0.00 3.85
2095 4085 4.451096 TCGAGCTGTAAACTGAATTTGGTC 59.549 41.667 0.00 0.00 0.00 4.02
2096 4086 4.385825 TCGAGCTGTAAACTGAATTTGGT 58.614 39.130 0.00 0.00 0.00 3.67
2097 4087 4.690748 TCTCGAGCTGTAAACTGAATTTGG 59.309 41.667 7.81 0.00 0.00 3.28
2098 4088 5.845985 TCTCGAGCTGTAAACTGAATTTG 57.154 39.130 7.81 0.00 0.00 2.32
2099 4089 6.260050 TGTTTCTCGAGCTGTAAACTGAATTT 59.740 34.615 21.21 0.00 33.89 1.82
2100 4090 5.758296 TGTTTCTCGAGCTGTAAACTGAATT 59.242 36.000 21.21 0.00 33.89 2.17
2101 4091 5.297547 TGTTTCTCGAGCTGTAAACTGAAT 58.702 37.500 21.21 0.00 33.89 2.57
2102 4092 4.689071 TGTTTCTCGAGCTGTAAACTGAA 58.311 39.130 21.21 5.78 33.89 3.02
2103 4093 4.316205 TGTTTCTCGAGCTGTAAACTGA 57.684 40.909 21.21 6.32 33.89 3.41
2104 4094 5.403897 TTTGTTTCTCGAGCTGTAAACTG 57.596 39.130 21.21 0.00 33.89 3.16
2105 4095 6.430451 CATTTTGTTTCTCGAGCTGTAAACT 58.570 36.000 21.21 8.28 33.89 2.66
2106 4096 5.115622 GCATTTTGTTTCTCGAGCTGTAAAC 59.884 40.000 16.49 16.49 33.46 2.01
2107 4097 5.212194 GCATTTTGTTTCTCGAGCTGTAAA 58.788 37.500 7.81 0.00 0.00 2.01
2108 4098 4.320202 GGCATTTTGTTTCTCGAGCTGTAA 60.320 41.667 7.81 0.00 0.00 2.41
2109 4099 3.188460 GGCATTTTGTTTCTCGAGCTGTA 59.812 43.478 7.81 0.00 0.00 2.74
2110 4100 2.030805 GGCATTTTGTTTCTCGAGCTGT 60.031 45.455 7.81 0.00 0.00 4.40
2111 4101 2.030893 TGGCATTTTGTTTCTCGAGCTG 60.031 45.455 7.81 0.00 0.00 4.24
2112 4102 2.227388 CTGGCATTTTGTTTCTCGAGCT 59.773 45.455 7.81 0.00 0.00 4.09
2113 4103 2.589014 CTGGCATTTTGTTTCTCGAGC 58.411 47.619 7.81 0.00 0.00 5.03
2114 4104 2.554032 ACCTGGCATTTTGTTTCTCGAG 59.446 45.455 5.93 5.93 0.00 4.04
2115 4105 2.293122 CACCTGGCATTTTGTTTCTCGA 59.707 45.455 0.00 0.00 0.00 4.04
2116 4106 2.034558 ACACCTGGCATTTTGTTTCTCG 59.965 45.455 0.00 0.00 0.00 4.04
2117 4107 3.068024 TCACACCTGGCATTTTGTTTCTC 59.932 43.478 0.00 0.00 0.00 2.87
2118 4108 3.030291 TCACACCTGGCATTTTGTTTCT 58.970 40.909 0.00 0.00 0.00 2.52
2119 4109 3.181476 ACTCACACCTGGCATTTTGTTTC 60.181 43.478 0.00 0.00 0.00 2.78
2120 4110 2.765699 ACTCACACCTGGCATTTTGTTT 59.234 40.909 0.00 0.00 0.00 2.83
2121 4111 2.362077 GACTCACACCTGGCATTTTGTT 59.638 45.455 0.00 0.00 0.00 2.83
2122 4112 1.956477 GACTCACACCTGGCATTTTGT 59.044 47.619 0.00 0.00 0.00 2.83
2123 4113 1.069022 CGACTCACACCTGGCATTTTG 60.069 52.381 0.00 0.00 0.00 2.44
2124 4114 1.238439 CGACTCACACCTGGCATTTT 58.762 50.000 0.00 0.00 0.00 1.82
2125 4115 0.606401 CCGACTCACACCTGGCATTT 60.606 55.000 0.00 0.00 0.00 2.32
2126 4116 1.003355 CCGACTCACACCTGGCATT 60.003 57.895 0.00 0.00 0.00 3.56
2127 4117 1.480212 TTCCGACTCACACCTGGCAT 61.480 55.000 0.00 0.00 0.00 4.40
2128 4118 2.137528 TTCCGACTCACACCTGGCA 61.138 57.895 0.00 0.00 0.00 4.92
2129 4119 1.668151 GTTCCGACTCACACCTGGC 60.668 63.158 0.00 0.00 0.00 4.85
2130 4120 0.393077 AAGTTCCGACTCACACCTGG 59.607 55.000 0.00 0.00 34.21 4.45
2131 4121 2.240493 AAAGTTCCGACTCACACCTG 57.760 50.000 0.00 0.00 34.21 4.00
2132 4122 4.525487 TGTATAAAGTTCCGACTCACACCT 59.475 41.667 0.00 0.00 34.21 4.00
2133 4123 4.813027 TGTATAAAGTTCCGACTCACACC 58.187 43.478 0.00 0.00 34.21 4.16
2134 4124 6.774354 TTTGTATAAAGTTCCGACTCACAC 57.226 37.500 0.00 0.00 34.21 3.82
2135 4125 6.987992 AGTTTTGTATAAAGTTCCGACTCACA 59.012 34.615 0.00 0.00 34.21 3.58
2136 4126 7.170320 TCAGTTTTGTATAAAGTTCCGACTCAC 59.830 37.037 0.00 0.00 34.21 3.51
2137 4127 7.211573 TCAGTTTTGTATAAAGTTCCGACTCA 58.788 34.615 0.00 0.00 34.21 3.41
2138 4128 7.647907 TCAGTTTTGTATAAAGTTCCGACTC 57.352 36.000 0.00 0.00 34.21 3.36
2139 4129 8.441312 TTTCAGTTTTGTATAAAGTTCCGACT 57.559 30.769 0.00 0.00 37.87 4.18
2140 4130 9.113876 CATTTCAGTTTTGTATAAAGTTCCGAC 57.886 33.333 0.00 0.00 0.00 4.79
2141 4131 8.293867 CCATTTCAGTTTTGTATAAAGTTCCGA 58.706 33.333 0.00 0.00 0.00 4.55
2142 4132 7.540745 CCCATTTCAGTTTTGTATAAAGTTCCG 59.459 37.037 0.00 0.00 0.00 4.30
2143 4133 8.581578 TCCCATTTCAGTTTTGTATAAAGTTCC 58.418 33.333 0.00 0.00 0.00 3.62
2149 4139 9.213799 GCAAAATCCCATTTCAGTTTTGTATAA 57.786 29.630 9.67 0.00 40.21 0.98
2150 4140 8.370940 TGCAAAATCCCATTTCAGTTTTGTATA 58.629 29.630 9.67 0.00 40.21 1.47
2151 4141 7.173047 GTGCAAAATCCCATTTCAGTTTTGTAT 59.827 33.333 9.67 0.00 40.21 2.29
2152 4142 6.481644 GTGCAAAATCCCATTTCAGTTTTGTA 59.518 34.615 9.67 3.89 40.21 2.41
2153 4143 5.296531 GTGCAAAATCCCATTTCAGTTTTGT 59.703 36.000 9.67 0.00 40.21 2.83
2154 4144 5.296283 TGTGCAAAATCCCATTTCAGTTTTG 59.704 36.000 0.00 0.00 40.73 2.44
2155 4145 5.435291 TGTGCAAAATCCCATTTCAGTTTT 58.565 33.333 0.00 0.00 0.00 2.43
2156 4146 5.033589 TGTGCAAAATCCCATTTCAGTTT 57.966 34.783 0.00 0.00 0.00 2.66
2157 4147 4.344679 TCTGTGCAAAATCCCATTTCAGTT 59.655 37.500 0.00 0.00 0.00 3.16
2158 4148 3.896888 TCTGTGCAAAATCCCATTTCAGT 59.103 39.130 0.00 0.00 0.00 3.41
2159 4149 4.219070 TCTCTGTGCAAAATCCCATTTCAG 59.781 41.667 0.00 0.00 0.00 3.02
2160 4150 4.151121 TCTCTGTGCAAAATCCCATTTCA 58.849 39.130 0.00 0.00 0.00 2.69
2161 4151 4.789012 TCTCTGTGCAAAATCCCATTTC 57.211 40.909 0.00 0.00 0.00 2.17
2162 4152 5.246656 TGAATCTCTGTGCAAAATCCCATTT 59.753 36.000 0.00 0.00 0.00 2.32
2163 4153 4.773674 TGAATCTCTGTGCAAAATCCCATT 59.226 37.500 0.00 0.00 0.00 3.16
2164 4154 4.346730 TGAATCTCTGTGCAAAATCCCAT 58.653 39.130 0.00 0.00 0.00 4.00
2165 4155 3.765381 TGAATCTCTGTGCAAAATCCCA 58.235 40.909 0.00 0.00 0.00 4.37
2166 4156 4.996788 ATGAATCTCTGTGCAAAATCCC 57.003 40.909 0.00 0.00 0.00 3.85
2167 4157 5.009410 CCCTATGAATCTCTGTGCAAAATCC 59.991 44.000 0.00 0.00 0.00 3.01
2168 4158 5.824624 TCCCTATGAATCTCTGTGCAAAATC 59.175 40.000 0.00 0.00 0.00 2.17
2169 4159 5.759059 TCCCTATGAATCTCTGTGCAAAAT 58.241 37.500 0.00 0.00 0.00 1.82
2170 4160 5.178096 TCCCTATGAATCTCTGTGCAAAA 57.822 39.130 0.00 0.00 0.00 2.44
2171 4161 4.842531 TCCCTATGAATCTCTGTGCAAA 57.157 40.909 0.00 0.00 0.00 3.68
2172 4162 5.378230 AATCCCTATGAATCTCTGTGCAA 57.622 39.130 0.00 0.00 0.00 4.08
2173 4163 5.378230 AAATCCCTATGAATCTCTGTGCA 57.622 39.130 0.00 0.00 0.00 4.57
2174 4164 6.705863 AAAAATCCCTATGAATCTCTGTGC 57.294 37.500 0.00 0.00 0.00 4.57
2205 4195 9.535170 TCCCACACTATTTGATTAACCAAAATA 57.465 29.630 0.00 0.00 39.20 1.40
2206 4196 8.429237 TCCCACACTATTTGATTAACCAAAAT 57.571 30.769 0.00 0.00 39.20 1.82
2207 4197 7.841282 TCCCACACTATTTGATTAACCAAAA 57.159 32.000 0.00 0.00 39.20 2.44
2208 4198 7.841282 TTCCCACACTATTTGATTAACCAAA 57.159 32.000 0.00 0.00 39.93 3.28
2209 4199 9.184523 CTATTCCCACACTATTTGATTAACCAA 57.815 33.333 0.00 0.00 0.00 3.67
2210 4200 8.553153 TCTATTCCCACACTATTTGATTAACCA 58.447 33.333 0.00 0.00 0.00 3.67
2211 4201 8.974060 TCTATTCCCACACTATTTGATTAACC 57.026 34.615 0.00 0.00 0.00 2.85
2215 4205 8.717717 TCTCATCTATTCCCACACTATTTGATT 58.282 33.333 0.00 0.00 0.00 2.57
2216 4206 8.153550 GTCTCATCTATTCCCACACTATTTGAT 58.846 37.037 0.00 0.00 0.00 2.57
2217 4207 7.345653 AGTCTCATCTATTCCCACACTATTTGA 59.654 37.037 0.00 0.00 0.00 2.69
2218 4208 7.504403 AGTCTCATCTATTCCCACACTATTTG 58.496 38.462 0.00 0.00 0.00 2.32
2219 4209 7.682787 AGTCTCATCTATTCCCACACTATTT 57.317 36.000 0.00 0.00 0.00 1.40
2220 4210 7.470702 CGAAGTCTCATCTATTCCCACACTATT 60.471 40.741 0.00 0.00 0.00 1.73
2221 4211 6.015856 CGAAGTCTCATCTATTCCCACACTAT 60.016 42.308 0.00 0.00 0.00 2.12
2222 4212 5.299531 CGAAGTCTCATCTATTCCCACACTA 59.700 44.000 0.00 0.00 0.00 2.74
2223 4213 4.098654 CGAAGTCTCATCTATTCCCACACT 59.901 45.833 0.00 0.00 0.00 3.55
2224 4214 4.142138 ACGAAGTCTCATCTATTCCCACAC 60.142 45.833 0.00 0.00 29.74 3.82
2225 4215 4.023980 ACGAAGTCTCATCTATTCCCACA 58.976 43.478 0.00 0.00 29.74 4.17
2226 4216 4.657436 ACGAAGTCTCATCTATTCCCAC 57.343 45.455 0.00 0.00 29.74 4.61
2227 4217 6.785337 TTAACGAAGTCTCATCTATTCCCA 57.215 37.500 0.00 0.00 45.00 4.37
2228 4218 8.145122 AGAATTAACGAAGTCTCATCTATTCCC 58.855 37.037 0.00 0.00 45.00 3.97
2239 4229 9.126151 TCATCTAGATGAGAATTAACGAAGTCT 57.874 33.333 27.93 0.00 41.14 3.24
2254 4244 7.873505 CAGATTTGCTCATTCTCATCTAGATGA 59.126 37.037 29.17 29.17 44.83 2.92
2255 4245 7.873505 TCAGATTTGCTCATTCTCATCTAGATG 59.126 37.037 24.32 24.32 40.09 2.90
2256 4246 7.964624 TCAGATTTGCTCATTCTCATCTAGAT 58.035 34.615 0.00 0.00 33.05 1.98
2257 4247 7.357429 TCAGATTTGCTCATTCTCATCTAGA 57.643 36.000 0.00 0.00 0.00 2.43
2258 4248 8.610248 ATTCAGATTTGCTCATTCTCATCTAG 57.390 34.615 0.00 0.00 0.00 2.43
2259 4249 8.975663 AATTCAGATTTGCTCATTCTCATCTA 57.024 30.769 0.00 0.00 0.00 1.98
2260 4250 7.883391 AATTCAGATTTGCTCATTCTCATCT 57.117 32.000 0.00 0.00 0.00 2.90
2271 4261 9.559958 CGTAACAGATTTTAATTCAGATTTGCT 57.440 29.630 0.00 0.00 0.00 3.91
2272 4262 9.554724 TCGTAACAGATTTTAATTCAGATTTGC 57.445 29.630 0.00 0.00 0.00 3.68
2283 4273 8.998989 CGACGTACTATTCGTAACAGATTTTAA 58.001 33.333 0.00 0.00 41.64 1.52
2284 4274 8.175069 ACGACGTACTATTCGTAACAGATTTTA 58.825 33.333 0.00 0.00 46.34 1.52
2285 4275 7.023575 ACGACGTACTATTCGTAACAGATTTT 58.976 34.615 0.00 0.00 46.34 1.82
2286 4276 6.546395 ACGACGTACTATTCGTAACAGATTT 58.454 36.000 0.00 0.00 46.34 2.17
2287 4277 6.111768 ACGACGTACTATTCGTAACAGATT 57.888 37.500 0.00 0.00 46.34 2.40
2288 4278 5.725110 ACGACGTACTATTCGTAACAGAT 57.275 39.130 0.00 0.00 46.34 2.90
2296 4286 3.933031 AGTGCTAACGACGTACTATTCG 58.067 45.455 0.00 6.80 41.14 3.34
2297 4287 6.042144 AGTAGTGCTAACGACGTACTATTC 57.958 41.667 10.60 1.45 37.05 1.75
2298 4288 5.582269 TGAGTAGTGCTAACGACGTACTATT 59.418 40.000 10.60 7.32 37.05 1.73
2299 4289 5.111989 TGAGTAGTGCTAACGACGTACTAT 58.888 41.667 10.60 2.48 37.05 2.12
2300 4290 4.494484 TGAGTAGTGCTAACGACGTACTA 58.506 43.478 0.00 2.30 37.05 1.82
2301 4291 3.329386 TGAGTAGTGCTAACGACGTACT 58.671 45.455 0.00 3.41 37.05 2.73
2302 4292 3.729526 TGAGTAGTGCTAACGACGTAC 57.270 47.619 0.00 0.00 37.05 3.67
2303 4293 5.111989 AGTATGAGTAGTGCTAACGACGTA 58.888 41.667 0.00 0.00 37.05 3.57
2304 4294 3.937706 AGTATGAGTAGTGCTAACGACGT 59.062 43.478 0.00 0.00 37.05 4.34
2305 4295 4.270566 AGAGTATGAGTAGTGCTAACGACG 59.729 45.833 0.00 0.00 37.05 5.12
2306 4296 5.738118 AGAGTATGAGTAGTGCTAACGAC 57.262 43.478 0.00 0.00 32.53 4.34
2307 4297 6.754702 AAAGAGTATGAGTAGTGCTAACGA 57.245 37.500 0.00 0.00 0.00 3.85
2308 4298 7.813852 AAAAAGAGTATGAGTAGTGCTAACG 57.186 36.000 0.00 0.00 0.00 3.18
2421 4411 0.682292 TGTGGGTTGTGCTGTATCGA 59.318 50.000 0.00 0.00 0.00 3.59
2429 4419 0.244450 CCATGTCATGTGGGTTGTGC 59.756 55.000 11.84 0.00 32.98 4.57
2778 4788 2.963101 TCGTGTCTTTCTTCTCCTTGGA 59.037 45.455 0.00 0.00 0.00 3.53
2787 4797 3.006003 GGAGGAGTCTTCGTGTCTTTCTT 59.994 47.826 0.00 0.00 0.00 2.52
2804 4814 2.917751 GGATCGGGCGATGGAGGA 60.918 66.667 0.00 0.00 34.60 3.71
2855 5161 0.768221 AGTTGCTCCTTCTCCCCACA 60.768 55.000 0.00 0.00 0.00 4.17
2880 5186 1.061276 GATCTTTCTTGGAAGCGTCGC 59.939 52.381 9.80 9.80 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.