Multiple sequence alignment - TraesCS1A01G091700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G091700 chr1A 100.000 3385 0 0 1 3385 84274011 84277395 0.000000e+00 6252.0
1 TraesCS1A01G091700 chr1A 92.034 477 34 4 2869 3344 492722216 492722689 0.000000e+00 667.0
2 TraesCS1A01G091700 chr1A 92.015 263 10 6 2620 2882 492720640 492720891 3.210000e-95 359.0
3 TraesCS1A01G091700 chr1A 89.524 105 11 0 1 105 84272994 84272890 2.120000e-27 134.0
4 TraesCS1A01G091700 chr1A 93.243 74 5 0 908 981 84268759 84268832 3.570000e-20 110.0
5 TraesCS1A01G091700 chr1A 93.939 66 4 0 910 975 84274853 84274918 2.150000e-17 100.0
6 TraesCS1A01G091700 chr1A 93.939 66 4 0 843 908 84274920 84274985 2.150000e-17 100.0
7 TraesCS1A01G091700 chr3D 96.690 997 31 2 2390 3385 353152572 353153567 0.000000e+00 1657.0
8 TraesCS1A01G091700 chr3D 90.356 1068 65 22 702 1753 353140629 353141674 0.000000e+00 1367.0
9 TraesCS1A01G091700 chr3D 96.289 485 18 0 1910 2394 353141669 353142153 0.000000e+00 797.0
10 TraesCS1A01G091700 chr3D 97.120 382 9 2 267 648 353140136 353140515 0.000000e+00 643.0
11 TraesCS1A01G091700 chr3D 91.713 181 8 2 106 279 82744989 82745169 9.380000e-61 244.0
12 TraesCS1A01G091700 chr3D 96.341 82 3 0 910 991 353140767 353140848 5.890000e-28 135.0
13 TraesCS1A01G091700 chr3D 94.444 72 3 1 838 908 353136245 353136316 3.570000e-20 110.0
14 TraesCS1A01G091700 chr2A 94.773 880 38 6 2508 3385 447300853 447299980 0.000000e+00 1363.0
15 TraesCS1A01G091700 chr2A 90.663 814 51 7 2508 3316 398448035 398447242 0.000000e+00 1059.0
16 TraesCS1A01G091700 chr2A 90.791 771 51 6 2546 3316 398867993 398868743 0.000000e+00 1013.0
17 TraesCS1A01G091700 chr2A 79.638 442 85 5 1916 2354 670233779 670233340 2.540000e-81 313.0
18 TraesCS1A01G091700 chr2A 94.505 182 8 2 1752 1932 478761521 478761341 2.570000e-71 279.0
19 TraesCS1A01G091700 chr2A 90.710 183 11 2 106 282 450578875 450579057 4.370000e-59 239.0
20 TraesCS1A01G091700 chr2B 94.018 886 42 6 2505 3385 165514801 165515680 0.000000e+00 1332.0
21 TraesCS1A01G091700 chr2B 94.077 878 47 3 2508 3385 381914063 381913191 0.000000e+00 1328.0
22 TraesCS1A01G091700 chr2B 79.540 435 86 3 1913 2345 620621389 620621822 1.180000e-79 307.0
23 TraesCS1A01G091700 chr2B 93.514 185 10 2 1741 1924 456021351 456021168 1.200000e-69 274.0
24 TraesCS1A01G091700 chr6A 93.530 881 52 3 2505 3385 207823875 207824750 0.000000e+00 1306.0
25 TraesCS1A01G091700 chr6A 100.000 35 0 0 589 623 146619877 146619911 7.840000e-07 65.8
26 TraesCS1A01G091700 chr5D 94.000 600 33 3 1910 2508 404761231 404761828 0.000000e+00 905.0
27 TraesCS1A01G091700 chr5D 87.903 620 48 12 996 1591 404759687 404760303 0.000000e+00 704.0
28 TraesCS1A01G091700 chr5D 91.102 236 20 1 996 1230 404758349 404758584 5.450000e-83 318.0
29 TraesCS1A01G091700 chr5D 95.732 164 7 0 1590 1753 404761073 404761236 7.200000e-67 265.0
30 TraesCS1A01G091700 chr5D 87.387 111 11 3 1 110 376700027 376700135 1.280000e-24 124.0
31 TraesCS1A01G091700 chr5B 93.500 600 36 3 1910 2508 485996833 485997430 0.000000e+00 889.0
32 TraesCS1A01G091700 chr5B 86.570 618 46 13 996 1588 485995477 485996082 0.000000e+00 647.0
33 TraesCS1A01G091700 chr5B 97.241 145 4 0 1590 1734 485996688 485996832 2.610000e-61 246.0
34 TraesCS1A01G091700 chr5B 90.055 181 12 2 106 280 360867022 360867202 2.630000e-56 230.0
35 TraesCS1A01G091700 chr5B 84.444 90 10 4 608 697 547755139 547755224 6.020000e-13 86.1
36 TraesCS1A01G091700 chr5B 83.333 90 11 4 608 697 547770646 547770731 2.800000e-11 80.5
37 TraesCS1A01G091700 chr5A 91.933 595 44 3 1915 2508 509337243 509336652 0.000000e+00 830.0
38 TraesCS1A01G091700 chr5A 90.167 600 48 6 1910 2508 509337685 509338274 0.000000e+00 771.0
39 TraesCS1A01G091700 chr5A 98.171 164 3 0 1752 1915 241540575 241540412 1.540000e-73 287.0
40 TraesCS1A01G091700 chr5A 92.308 182 6 3 106 279 607718657 607718476 5.610000e-63 252.0
41 TraesCS1A01G091700 chr5A 94.340 159 9 0 1593 1751 509337403 509337245 9.380000e-61 244.0
42 TraesCS1A01G091700 chr5A 91.463 164 14 0 1590 1753 509337527 509337690 3.400000e-55 226.0
43 TraesCS1A01G091700 chr4A 85.494 324 32 10 267 581 729232149 729231832 1.170000e-84 324.0
44 TraesCS1A01G091700 chr4A 90.556 180 11 2 106 279 96314238 96314417 2.030000e-57 233.0
45 TraesCS1A01G091700 chr4A 86.923 130 10 5 459 581 742325059 742324930 4.550000e-29 139.0
46 TraesCS1A01G091700 chr4A 100.000 29 0 0 2508 2536 668106032 668106004 2.000000e-03 54.7
47 TraesCS1A01G091700 chr2D 79.630 432 85 3 1916 2345 524578590 524578160 1.180000e-79 307.0
48 TraesCS1A01G091700 chr2D 89.720 107 9 2 1 106 33335807 33335912 5.890000e-28 135.0
49 TraesCS1A01G091700 chr2D 88.571 105 12 0 1 105 613337586 613337690 9.860000e-26 128.0
50 TraesCS1A01G091700 chr7B 98.276 174 2 1 1742 1915 636433796 636433624 1.530000e-78 303.0
51 TraesCS1A01G091700 chr7B 90.909 66 5 1 633 697 321326519 321326454 1.670000e-13 87.9
52 TraesCS1A01G091700 chr3A 98.182 165 3 0 1751 1915 689001345 689001509 4.270000e-74 289.0
53 TraesCS1A01G091700 chr3A 97.059 170 5 0 1748 1917 602023055 602023224 1.540000e-73 287.0
54 TraesCS1A01G091700 chr3A 95.506 178 7 1 1738 1915 1759877 1759701 1.990000e-72 283.0
55 TraesCS1A01G091700 chr3A 95.429 175 8 0 1749 1923 738744881 738744707 2.570000e-71 279.0
56 TraesCS1A01G091700 chr7A 97.605 167 4 0 1749 1915 311305897 311306063 1.540000e-73 287.0
57 TraesCS1A01G091700 chr7A 91.429 105 8 1 1 105 164664867 164664970 3.520000e-30 143.0
58 TraesCS1A01G091700 chr7A 88.571 105 12 0 1 105 164663879 164663775 9.860000e-26 128.0
59 TraesCS1A01G091700 chr3B 92.222 180 8 2 106 279 581978166 581977987 2.020000e-62 250.0
60 TraesCS1A01G091700 chr6B 92.179 179 7 2 106 279 26089587 26089763 2.610000e-61 246.0
61 TraesCS1A01G091700 chr6B 91.304 184 10 2 106 283 640627018 640626835 2.610000e-61 246.0
62 TraesCS1A01G091700 chr7D 90.323 186 12 2 106 285 203039596 203039781 4.370000e-59 239.0
63 TraesCS1A01G091700 chr4D 92.262 168 12 1 582 749 165539299 165539465 1.570000e-58 237.0
64 TraesCS1A01G091700 chr4D 90.964 166 14 1 584 749 165543781 165543945 4.400000e-54 222.0
65 TraesCS1A01G091700 chr6D 89.623 106 9 2 1 105 47269708 47269812 2.120000e-27 134.0
66 TraesCS1A01G091700 chr6D 88.679 106 10 2 1 105 47662738 47662634 9.860000e-26 128.0
67 TraesCS1A01G091700 chr4B 85.833 120 14 3 1 118 583996638 583996520 1.280000e-24 124.0
68 TraesCS1A01G091700 chr4B 80.690 145 18 9 633 770 363779713 363779854 1.660000e-18 104.0
69 TraesCS1A01G091700 chr4B 86.667 90 8 4 608 697 485379017 485379102 2.780000e-16 97.1
70 TraesCS1A01G091700 chr4B 78.378 148 19 9 633 770 363770731 363770875 2.160000e-12 84.2
71 TraesCS1A01G091700 chr1B 85.507 69 7 3 633 701 534471071 534471136 6.060000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G091700 chr1A 84274011 84277395 3384 False 2150.666667 6252 95.959333 1 3385 3 chr1A.!!$F2 3384
1 TraesCS1A01G091700 chr1A 492720640 492722689 2049 False 513.000000 667 92.024500 2620 3344 2 chr1A.!!$F3 724
2 TraesCS1A01G091700 chr3D 353152572 353153567 995 False 1657.000000 1657 96.690000 2390 3385 1 chr3D.!!$F2 995
3 TraesCS1A01G091700 chr3D 353136245 353142153 5908 False 610.400000 1367 94.910000 267 2394 5 chr3D.!!$F3 2127
4 TraesCS1A01G091700 chr2A 447299980 447300853 873 True 1363.000000 1363 94.773000 2508 3385 1 chr2A.!!$R2 877
5 TraesCS1A01G091700 chr2A 398447242 398448035 793 True 1059.000000 1059 90.663000 2508 3316 1 chr2A.!!$R1 808
6 TraesCS1A01G091700 chr2A 398867993 398868743 750 False 1013.000000 1013 90.791000 2546 3316 1 chr2A.!!$F1 770
7 TraesCS1A01G091700 chr2B 165514801 165515680 879 False 1332.000000 1332 94.018000 2505 3385 1 chr2B.!!$F1 880
8 TraesCS1A01G091700 chr2B 381913191 381914063 872 True 1328.000000 1328 94.077000 2508 3385 1 chr2B.!!$R1 877
9 TraesCS1A01G091700 chr6A 207823875 207824750 875 False 1306.000000 1306 93.530000 2505 3385 1 chr6A.!!$F2 880
10 TraesCS1A01G091700 chr5D 404758349 404761828 3479 False 548.000000 905 92.184250 996 2508 4 chr5D.!!$F2 1512
11 TraesCS1A01G091700 chr5B 485995477 485997430 1953 False 594.000000 889 92.437000 996 2508 3 chr5B.!!$F4 1512
12 TraesCS1A01G091700 chr5A 509336652 509337403 751 True 537.000000 830 93.136500 1593 2508 2 chr5A.!!$R3 915
13 TraesCS1A01G091700 chr5A 509337527 509338274 747 False 498.500000 771 90.815000 1590 2508 2 chr5A.!!$F1 918

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 4278 0.037303 CTGCTGCTCTTCTTTCCCCA 59.963 55.0 0.0 0.0 0.0 4.96 F
937 4650 0.183731 GCCGATCCTCTTTTCCCCAT 59.816 55.0 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2010 6843 1.065418 CGAATAAACAGGCCACTCCCT 60.065 52.381 5.01 0.0 34.93 4.20 R
2780 7622 0.107945 GTTCCTCTCGGCTCTTGCAT 60.108 55.000 0.00 0.0 41.91 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.920640 TTTGCCACGGATTAGAACAAAA 57.079 36.364 0.00 0.00 0.00 2.44
22 23 4.497473 TTGCCACGGATTAGAACAAAAG 57.503 40.909 0.00 0.00 0.00 2.27
23 24 3.482436 TGCCACGGATTAGAACAAAAGT 58.518 40.909 0.00 0.00 0.00 2.66
24 25 3.252215 TGCCACGGATTAGAACAAAAGTG 59.748 43.478 0.00 0.00 0.00 3.16
25 26 4.419522 CCACGGATTAGAACAAAAGTGG 57.580 45.455 0.00 0.00 41.29 4.00
28 29 5.121768 CCACGGATTAGAACAAAAGTGGTAG 59.878 44.000 3.38 0.00 41.92 3.18
30 31 6.204108 CACGGATTAGAACAAAAGTGGTAGTT 59.796 38.462 0.00 0.00 0.00 2.24
32 33 7.283807 ACGGATTAGAACAAAAGTGGTAGTTTT 59.716 33.333 0.00 0.00 31.34 2.43
33 34 7.801783 CGGATTAGAACAAAAGTGGTAGTTTTC 59.198 37.037 0.00 0.00 28.88 2.29
34 35 8.080417 GGATTAGAACAAAAGTGGTAGTTTTCC 58.920 37.037 0.00 0.00 28.88 3.13
35 36 7.941431 TTAGAACAAAAGTGGTAGTTTTCCA 57.059 32.000 0.00 0.00 28.88 3.53
46 47 4.404073 TGGTAGTTTTCCACACAAAAGCAT 59.596 37.500 0.00 0.00 0.00 3.79
47 48 5.594725 TGGTAGTTTTCCACACAAAAGCATA 59.405 36.000 0.00 0.00 0.00 3.14
49 50 6.981559 GGTAGTTTTCCACACAAAAGCATAAA 59.018 34.615 0.00 0.00 0.00 1.40
50 51 7.169140 GGTAGTTTTCCACACAAAAGCATAAAG 59.831 37.037 0.00 0.00 0.00 1.85
51 52 6.639563 AGTTTTCCACACAAAAGCATAAAGT 58.360 32.000 0.00 0.00 0.00 2.66
52 53 6.534793 AGTTTTCCACACAAAAGCATAAAGTG 59.465 34.615 0.00 0.00 36.34 3.16
53 54 4.582701 TCCACACAAAAGCATAAAGTGG 57.417 40.909 0.00 0.00 44.76 4.00
56 57 5.240623 TCCACACAAAAGCATAAAGTGGTAG 59.759 40.000 0.00 0.00 44.02 3.18
57 58 5.009610 CCACACAAAAGCATAAAGTGGTAGT 59.990 40.000 0.00 0.00 40.00 2.73
58 59 6.460953 CCACACAAAAGCATAAAGTGGTAGTT 60.461 38.462 0.00 0.00 40.00 2.24
60 61 7.167468 CACACAAAAGCATAAAGTGGTAGTTTC 59.833 37.037 0.00 0.00 37.63 2.78
61 62 7.068226 ACACAAAAGCATAAAGTGGTAGTTTCT 59.932 33.333 0.00 0.00 37.63 2.52
62 63 7.379529 CACAAAAGCATAAAGTGGTAGTTTCTG 59.620 37.037 0.00 0.00 37.63 3.02
63 64 6.575162 AAAGCATAAAGTGGTAGTTTCTGG 57.425 37.500 0.00 0.00 37.63 3.86
64 65 4.589908 AGCATAAAGTGGTAGTTTCTGGG 58.410 43.478 0.00 0.00 36.63 4.45
65 66 4.042934 AGCATAAAGTGGTAGTTTCTGGGT 59.957 41.667 0.00 0.00 36.63 4.51
67 68 6.069615 AGCATAAAGTGGTAGTTTCTGGGTAT 60.070 38.462 0.00 0.00 36.63 2.73
69 70 4.569719 AAGTGGTAGTTTCTGGGTATGG 57.430 45.455 0.00 0.00 0.00 2.74
70 71 3.527937 AGTGGTAGTTTCTGGGTATGGT 58.472 45.455 0.00 0.00 0.00 3.55
71 72 3.914435 AGTGGTAGTTTCTGGGTATGGTT 59.086 43.478 0.00 0.00 0.00 3.67
72 73 4.352893 AGTGGTAGTTTCTGGGTATGGTTT 59.647 41.667 0.00 0.00 0.00 3.27
73 74 4.698780 GTGGTAGTTTCTGGGTATGGTTTC 59.301 45.833 0.00 0.00 0.00 2.78
75 76 5.014755 TGGTAGTTTCTGGGTATGGTTTCAT 59.985 40.000 0.00 0.00 37.40 2.57
76 77 5.357032 GGTAGTTTCTGGGTATGGTTTCATG 59.643 44.000 0.00 0.00 34.96 3.07
79 80 6.256053 AGTTTCTGGGTATGGTTTCATGAAT 58.744 36.000 9.40 0.00 34.96 2.57
82 83 5.579047 TCTGGGTATGGTTTCATGAATTGT 58.421 37.500 9.40 0.00 34.96 2.71
83 84 5.418524 TCTGGGTATGGTTTCATGAATTGTG 59.581 40.000 9.40 0.00 34.96 3.33
84 85 4.465660 TGGGTATGGTTTCATGAATTGTGG 59.534 41.667 9.40 0.00 34.96 4.17
86 87 5.654650 GGGTATGGTTTCATGAATTGTGGTA 59.345 40.000 9.40 0.00 34.96 3.25
87 88 6.183360 GGGTATGGTTTCATGAATTGTGGTAG 60.183 42.308 9.40 0.00 34.96 3.18
88 89 6.377146 GGTATGGTTTCATGAATTGTGGTAGT 59.623 38.462 9.40 0.00 34.96 2.73
89 90 6.916360 ATGGTTTCATGAATTGTGGTAGTT 57.084 33.333 9.40 0.00 31.34 2.24
90 91 6.723298 TGGTTTCATGAATTGTGGTAGTTT 57.277 33.333 9.40 0.00 0.00 2.66
91 92 7.118496 TGGTTTCATGAATTGTGGTAGTTTT 57.882 32.000 9.40 0.00 0.00 2.43
92 93 7.560368 TGGTTTCATGAATTGTGGTAGTTTTT 58.440 30.769 9.40 0.00 0.00 1.94
93 94 7.493971 TGGTTTCATGAATTGTGGTAGTTTTTG 59.506 33.333 9.40 0.00 0.00 2.44
94 95 7.042119 GGTTTCATGAATTGTGGTAGTTTTTGG 60.042 37.037 9.40 0.00 0.00 3.28
95 96 6.723298 TCATGAATTGTGGTAGTTTTTGGT 57.277 33.333 0.00 0.00 0.00 3.67
97 98 8.239038 TCATGAATTGTGGTAGTTTTTGGTTA 57.761 30.769 0.00 0.00 0.00 2.85
98 99 8.696374 TCATGAATTGTGGTAGTTTTTGGTTAA 58.304 29.630 0.00 0.00 0.00 2.01
99 100 9.319143 CATGAATTGTGGTAGTTTTTGGTTAAA 57.681 29.630 0.00 0.00 0.00 1.52
105 106 8.983702 TGTGGTAGTTTTTGGTTAAATACTCT 57.016 30.769 0.00 0.00 38.47 3.24
108 109 7.502895 TGGTAGTTTTTGGTTAAATACTCTGCA 59.497 33.333 0.00 0.00 38.47 4.41
109 110 8.520351 GGTAGTTTTTGGTTAAATACTCTGCAT 58.480 33.333 0.00 0.00 38.47 3.96
110 111 9.908152 GTAGTTTTTGGTTAAATACTCTGCATT 57.092 29.630 0.00 0.00 38.47 3.56
112 113 9.830975 AGTTTTTGGTTAAATACTCTGCATTTT 57.169 25.926 0.00 0.00 34.37 1.82
113 114 9.862585 GTTTTTGGTTAAATACTCTGCATTTTG 57.137 29.630 0.00 0.00 0.00 2.44
115 116 9.474920 TTTTGGTTAAATACTCTGCATTTTGAG 57.525 29.630 0.00 0.00 36.47 3.02
116 117 7.759489 TGGTTAAATACTCTGCATTTTGAGT 57.241 32.000 10.74 10.74 44.56 3.41
117 118 7.592938 TGGTTAAATACTCTGCATTTTGAGTG 58.407 34.615 14.72 0.00 42.67 3.51
118 119 7.029563 GGTTAAATACTCTGCATTTTGAGTGG 58.970 38.462 14.72 0.00 42.67 4.00
119 120 7.094377 GGTTAAATACTCTGCATTTTGAGTGGA 60.094 37.037 14.72 0.00 42.67 4.02
122 123 2.107204 ACTCTGCATTTTGAGTGGACCT 59.893 45.455 5.60 0.00 41.40 3.85
123 124 3.152341 CTCTGCATTTTGAGTGGACCTT 58.848 45.455 0.00 0.00 0.00 3.50
125 126 3.318839 TCTGCATTTTGAGTGGACCTTTG 59.681 43.478 0.00 0.00 0.00 2.77
126 127 3.295093 TGCATTTTGAGTGGACCTTTGA 58.705 40.909 0.00 0.00 0.00 2.69
127 128 3.896888 TGCATTTTGAGTGGACCTTTGAT 59.103 39.130 0.00 0.00 0.00 2.57
128 129 4.240096 GCATTTTGAGTGGACCTTTGATG 58.760 43.478 0.00 0.00 0.00 3.07
130 131 5.706916 CATTTTGAGTGGACCTTTGATGAG 58.293 41.667 0.00 0.00 0.00 2.90
131 132 3.423539 TTGAGTGGACCTTTGATGAGG 57.576 47.619 0.00 0.00 42.75 3.86
139 140 1.843368 CCTTTGATGAGGTGGCATGT 58.157 50.000 0.00 0.00 31.89 3.21
142 143 2.118313 TTGATGAGGTGGCATGTGAG 57.882 50.000 0.00 0.00 0.00 3.51
146 147 1.126948 TGAGGTGGCATGTGAGGTGA 61.127 55.000 0.00 0.00 0.00 4.02
151 152 0.478072 TGGCATGTGAGGTGAAAGGT 59.522 50.000 0.00 0.00 0.00 3.50
152 153 0.883833 GGCATGTGAGGTGAAAGGTG 59.116 55.000 0.00 0.00 0.00 4.00
153 154 1.609208 GCATGTGAGGTGAAAGGTGT 58.391 50.000 0.00 0.00 0.00 4.16
155 156 1.267806 CATGTGAGGTGAAAGGTGTGC 59.732 52.381 0.00 0.00 0.00 4.57
156 157 0.254462 TGTGAGGTGAAAGGTGTGCA 59.746 50.000 0.00 0.00 0.00 4.57
157 158 1.133823 TGTGAGGTGAAAGGTGTGCAT 60.134 47.619 0.00 0.00 0.00 3.96
160 161 1.808945 GAGGTGAAAGGTGTGCATGAG 59.191 52.381 0.00 0.00 0.00 2.90
164 165 3.076621 GTGAAAGGTGTGCATGAGATCA 58.923 45.455 0.00 0.00 0.00 2.92
167 168 3.430042 AAGGTGTGCATGAGATCAACT 57.570 42.857 0.00 0.00 0.00 3.16
169 170 4.558226 AGGTGTGCATGAGATCAACTAA 57.442 40.909 0.00 0.00 0.00 2.24
170 171 5.108187 AGGTGTGCATGAGATCAACTAAT 57.892 39.130 0.00 0.00 0.00 1.73
172 173 6.653020 AGGTGTGCATGAGATCAACTAATAA 58.347 36.000 0.00 0.00 0.00 1.40
173 174 7.285566 AGGTGTGCATGAGATCAACTAATAAT 58.714 34.615 0.00 0.00 0.00 1.28
174 175 7.228108 AGGTGTGCATGAGATCAACTAATAATG 59.772 37.037 0.00 0.00 0.00 1.90
175 176 7.358066 GTGTGCATGAGATCAACTAATAATGG 58.642 38.462 0.00 0.00 0.00 3.16
176 177 7.227314 GTGTGCATGAGATCAACTAATAATGGA 59.773 37.037 0.00 0.00 0.00 3.41
177 178 7.774625 TGTGCATGAGATCAACTAATAATGGAA 59.225 33.333 0.00 0.00 0.00 3.53
179 180 9.358406 TGCATGAGATCAACTAATAATGGAATT 57.642 29.630 0.00 0.00 41.28 2.17
206 207 0.680601 CATGCATGTAGTGGTGGGCA 60.681 55.000 18.91 0.00 35.54 5.36
207 208 0.259647 ATGCATGTAGTGGTGGGCAT 59.740 50.000 0.00 0.00 37.17 4.40
208 209 0.039472 TGCATGTAGTGGTGGGCATT 59.961 50.000 0.00 0.00 0.00 3.56
210 211 1.135024 GCATGTAGTGGTGGGCATTTG 60.135 52.381 0.00 0.00 0.00 2.32
211 212 2.445427 CATGTAGTGGTGGGCATTTGA 58.555 47.619 0.00 0.00 0.00 2.69
212 213 2.897271 TGTAGTGGTGGGCATTTGAT 57.103 45.000 0.00 0.00 0.00 2.57
215 216 1.843368 AGTGGTGGGCATTTGATGAG 58.157 50.000 0.00 0.00 0.00 2.90
216 217 0.819582 GTGGTGGGCATTTGATGAGG 59.180 55.000 0.00 0.00 0.00 3.86
217 218 0.409092 TGGTGGGCATTTGATGAGGT 59.591 50.000 0.00 0.00 0.00 3.85
219 220 0.819582 GTGGGCATTTGATGAGGTGG 59.180 55.000 0.00 0.00 0.00 4.61
220 221 0.971959 TGGGCATTTGATGAGGTGGC 60.972 55.000 0.00 0.00 36.52 5.01
222 223 1.315257 GGCATTTGATGAGGTGGCGT 61.315 55.000 0.00 0.00 0.00 5.68
224 225 1.167851 CATTTGATGAGGTGGCGTGT 58.832 50.000 0.00 0.00 0.00 4.49
228 229 2.669569 ATGAGGTGGCGTGTGTGC 60.670 61.111 0.00 0.00 0.00 4.57
231 232 2.969806 GAGGTGGCGTGTGTGCATG 61.970 63.158 0.00 0.00 36.28 4.06
233 234 2.721231 GTGGCGTGTGTGCATGTT 59.279 55.556 0.00 0.00 36.28 2.71
234 235 1.658102 GTGGCGTGTGTGCATGTTG 60.658 57.895 0.00 0.00 36.28 3.33
235 236 1.821332 TGGCGTGTGTGCATGTTGA 60.821 52.632 0.00 0.00 36.28 3.18
236 237 1.081906 GGCGTGTGTGCATGTTGAG 60.082 57.895 0.00 0.00 36.28 3.02
238 239 0.518636 GCGTGTGTGCATGTTGAGAT 59.481 50.000 0.00 0.00 34.24 2.75
239 240 1.731709 GCGTGTGTGCATGTTGAGATA 59.268 47.619 0.00 0.00 34.24 1.98
241 242 3.364864 GCGTGTGTGCATGTTGAGATAAA 60.365 43.478 0.00 0.00 34.24 1.40
242 243 4.672542 GCGTGTGTGCATGTTGAGATAAAT 60.673 41.667 0.00 0.00 34.24 1.40
243 244 5.447144 GCGTGTGTGCATGTTGAGATAAATA 60.447 40.000 0.00 0.00 34.24 1.40
245 246 6.489675 GTGTGTGCATGTTGAGATAAATAGG 58.510 40.000 0.00 0.00 0.00 2.57
246 247 6.316140 GTGTGTGCATGTTGAGATAAATAGGA 59.684 38.462 0.00 0.00 0.00 2.94
248 249 8.210265 TGTGTGCATGTTGAGATAAATAGGATA 58.790 33.333 0.00 0.00 0.00 2.59
249 250 8.715998 GTGTGCATGTTGAGATAAATAGGATAG 58.284 37.037 0.00 0.00 0.00 2.08
250 251 8.432013 TGTGCATGTTGAGATAAATAGGATAGT 58.568 33.333 0.00 0.00 0.00 2.12
253 254 9.494271 GCATGTTGAGATAAATAGGATAGTGAA 57.506 33.333 0.00 0.00 0.00 3.18
315 3939 6.901615 TCCACTTTATCCCCAAATCTCTAA 57.098 37.500 0.00 0.00 0.00 2.10
468 4092 6.527722 ACATTAGCTTGCAAATTGTTCGTATG 59.472 34.615 0.00 0.00 0.00 2.39
631 4255 2.960170 CCGTCCTTCGTCCTTCGT 59.040 61.111 0.00 0.00 40.80 3.85
632 4256 1.154073 CCGTCCTTCGTCCTTCGTC 60.154 63.158 0.00 0.00 40.80 4.20
633 4257 1.584380 CCGTCCTTCGTCCTTCGTCT 61.584 60.000 0.00 0.00 40.80 4.18
634 4258 0.454620 CGTCCTTCGTCCTTCGTCTG 60.455 60.000 0.00 0.00 40.80 3.51
635 4259 0.733223 GTCCTTCGTCCTTCGTCTGC 60.733 60.000 0.00 0.00 40.80 4.26
636 4260 0.894184 TCCTTCGTCCTTCGTCTGCT 60.894 55.000 0.00 0.00 40.80 4.24
637 4261 0.734253 CCTTCGTCCTTCGTCTGCTG 60.734 60.000 0.00 0.00 40.80 4.41
638 4262 1.347817 CTTCGTCCTTCGTCTGCTGC 61.348 60.000 0.00 0.00 40.80 5.25
639 4263 1.806461 TTCGTCCTTCGTCTGCTGCT 61.806 55.000 0.00 0.00 40.80 4.24
640 4264 2.091112 CGTCCTTCGTCTGCTGCTG 61.091 63.158 0.00 0.00 34.52 4.41
641 4265 2.047844 TCCTTCGTCTGCTGCTGC 60.048 61.111 8.89 8.89 40.20 5.25
642 4266 2.047465 CCTTCGTCTGCTGCTGCT 60.047 61.111 17.00 0.00 40.48 4.24
643 4267 2.099431 CCTTCGTCTGCTGCTGCTC 61.099 63.158 17.00 6.54 40.48 4.26
644 4268 1.079956 CTTCGTCTGCTGCTGCTCT 60.080 57.895 17.00 0.00 40.48 4.09
645 4269 0.669932 CTTCGTCTGCTGCTGCTCTT 60.670 55.000 17.00 0.00 40.48 2.85
646 4270 0.668706 TTCGTCTGCTGCTGCTCTTC 60.669 55.000 17.00 4.25 40.48 2.87
647 4271 1.079956 CGTCTGCTGCTGCTCTTCT 60.080 57.895 17.00 0.00 40.48 2.85
648 4272 0.669932 CGTCTGCTGCTGCTCTTCTT 60.670 55.000 17.00 0.00 40.48 2.52
649 4273 1.521580 GTCTGCTGCTGCTCTTCTTT 58.478 50.000 17.00 0.00 40.48 2.52
650 4274 1.464219 GTCTGCTGCTGCTCTTCTTTC 59.536 52.381 17.00 0.00 40.48 2.62
651 4275 0.803740 CTGCTGCTGCTCTTCTTTCC 59.196 55.000 17.00 0.00 40.48 3.13
652 4276 0.607489 TGCTGCTGCTCTTCTTTCCC 60.607 55.000 17.00 0.00 40.48 3.97
653 4277 1.311651 GCTGCTGCTCTTCTTTCCCC 61.312 60.000 8.53 0.00 36.03 4.81
654 4278 0.037303 CTGCTGCTCTTCTTTCCCCA 59.963 55.000 0.00 0.00 0.00 4.96
655 4279 0.250901 TGCTGCTCTTCTTTCCCCAC 60.251 55.000 0.00 0.00 0.00 4.61
656 4280 1.301677 GCTGCTCTTCTTTCCCCACG 61.302 60.000 0.00 0.00 0.00 4.94
657 4281 1.301677 CTGCTCTTCTTTCCCCACGC 61.302 60.000 0.00 0.00 0.00 5.34
658 4282 2.041115 GCTCTTCTTTCCCCACGCC 61.041 63.158 0.00 0.00 0.00 5.68
659 4283 1.679898 CTCTTCTTTCCCCACGCCT 59.320 57.895 0.00 0.00 0.00 5.52
674 4298 1.760086 GCCTCTGCTGCTCCTCCTA 60.760 63.158 0.00 0.00 33.53 2.94
697 4321 0.250209 ACACTGTTGCTGCTCCTCTG 60.250 55.000 0.00 0.00 0.00 3.35
713 4425 2.095364 CCTCTGCTTAAAACTGCTGCTG 60.095 50.000 4.89 4.89 0.00 4.41
716 4428 1.682854 TGCTTAAAACTGCTGCTGCTT 59.317 42.857 17.00 5.17 40.48 3.91
731 4443 0.832135 TGCTTCCTCTTCCCACGTCT 60.832 55.000 0.00 0.00 0.00 4.18
783 4496 1.491332 CTCCTCCCCTCGTCTCTTCTA 59.509 57.143 0.00 0.00 0.00 2.10
793 4506 1.202245 CGTCTCTTCTACTGCTGCTCC 60.202 57.143 0.00 0.00 0.00 4.70
794 4507 1.136110 GTCTCTTCTACTGCTGCTCCC 59.864 57.143 0.00 0.00 0.00 4.30
795 4508 1.006519 TCTCTTCTACTGCTGCTCCCT 59.993 52.381 0.00 0.00 0.00 4.20
796 4509 1.408702 CTCTTCTACTGCTGCTCCCTC 59.591 57.143 0.00 0.00 0.00 4.30
877 4590 0.553333 CCCTTTTCCCCATCCTCTCC 59.447 60.000 0.00 0.00 0.00 3.71
878 4591 0.553333 CCTTTTCCCCATCCTCTCCC 59.447 60.000 0.00 0.00 0.00 4.30
879 4592 1.601248 CTTTTCCCCATCCTCTCCCT 58.399 55.000 0.00 0.00 0.00 4.20
880 4593 1.492599 CTTTTCCCCATCCTCTCCCTC 59.507 57.143 0.00 0.00 0.00 4.30
881 4594 0.725133 TTTCCCCATCCTCTCCCTCT 59.275 55.000 0.00 0.00 0.00 3.69
882 4595 0.266152 TTCCCCATCCTCTCCCTCTC 59.734 60.000 0.00 0.00 0.00 3.20
883 4596 0.631998 TCCCCATCCTCTCCCTCTCT 60.632 60.000 0.00 0.00 0.00 3.10
884 4597 1.162505 CCCCATCCTCTCCCTCTCTA 58.837 60.000 0.00 0.00 0.00 2.43
885 4598 1.203125 CCCCATCCTCTCCCTCTCTAC 60.203 61.905 0.00 0.00 0.00 2.59
886 4599 1.786441 CCCATCCTCTCCCTCTCTACT 59.214 57.143 0.00 0.00 0.00 2.57
887 4600 2.225017 CCCATCCTCTCCCTCTCTACTC 60.225 59.091 0.00 0.00 0.00 2.59
888 4601 2.225017 CCATCCTCTCCCTCTCTACTCC 60.225 59.091 0.00 0.00 0.00 3.85
889 4602 2.598288 TCCTCTCCCTCTCTACTCCT 57.402 55.000 0.00 0.00 0.00 3.69
890 4603 3.728710 TCCTCTCCCTCTCTACTCCTA 57.271 52.381 0.00 0.00 0.00 2.94
891 4604 4.023712 TCCTCTCCCTCTCTACTCCTAA 57.976 50.000 0.00 0.00 0.00 2.69
892 4605 3.717913 TCCTCTCCCTCTCTACTCCTAAC 59.282 52.174 0.00 0.00 0.00 2.34
893 4606 3.720002 CCTCTCCCTCTCTACTCCTAACT 59.280 52.174 0.00 0.00 0.00 2.24
894 4607 4.445735 CCTCTCCCTCTCTACTCCTAACTG 60.446 54.167 0.00 0.00 0.00 3.16
895 4608 4.113085 TCTCCCTCTCTACTCCTAACTGT 58.887 47.826 0.00 0.00 0.00 3.55
896 4609 5.287042 TCTCCCTCTCTACTCCTAACTGTA 58.713 45.833 0.00 0.00 0.00 2.74
897 4610 5.367352 TCTCCCTCTCTACTCCTAACTGTAG 59.633 48.000 0.00 0.00 37.92 2.74
898 4611 5.287042 TCCCTCTCTACTCCTAACTGTAGA 58.713 45.833 0.00 0.00 41.69 2.59
899 4612 5.912354 TCCCTCTCTACTCCTAACTGTAGAT 59.088 44.000 0.00 0.00 42.58 1.98
900 4613 6.043474 TCCCTCTCTACTCCTAACTGTAGATC 59.957 46.154 0.00 0.00 42.58 2.75
901 4614 5.929992 CCTCTCTACTCCTAACTGTAGATCG 59.070 48.000 0.00 0.00 42.58 3.69
902 4615 6.239373 CCTCTCTACTCCTAACTGTAGATCGA 60.239 46.154 0.00 0.00 42.58 3.59
903 4616 6.751157 TCTCTACTCCTAACTGTAGATCGAG 58.249 44.000 0.00 0.00 42.58 4.04
904 4617 5.856156 TCTACTCCTAACTGTAGATCGAGG 58.144 45.833 0.00 0.00 39.84 4.63
905 4618 4.506937 ACTCCTAACTGTAGATCGAGGT 57.493 45.455 0.00 0.00 0.00 3.85
906 4619 4.453751 ACTCCTAACTGTAGATCGAGGTC 58.546 47.826 0.00 0.00 0.00 3.85
907 4620 3.816523 CTCCTAACTGTAGATCGAGGTCC 59.183 52.174 0.00 0.00 0.00 4.46
908 4621 2.548904 CCTAACTGTAGATCGAGGTCCG 59.451 54.545 0.00 0.00 40.25 4.79
909 4622 2.125773 AACTGTAGATCGAGGTCCGT 57.874 50.000 0.00 0.00 39.75 4.69
910 4623 1.666054 ACTGTAGATCGAGGTCCGTC 58.334 55.000 0.00 0.00 39.75 4.79
911 4624 0.945813 CTGTAGATCGAGGTCCGTCC 59.054 60.000 0.00 0.00 39.75 4.79
919 4632 3.622514 AGGTCCGTCCTCATCAGC 58.377 61.111 0.00 0.00 44.42 4.26
920 4633 2.060980 AGGTCCGTCCTCATCAGCC 61.061 63.158 0.00 0.00 44.42 4.85
921 4634 2.105128 GTCCGTCCTCATCAGCCG 59.895 66.667 0.00 0.00 0.00 5.52
922 4635 2.044352 TCCGTCCTCATCAGCCGA 60.044 61.111 0.00 0.00 0.00 5.54
923 4636 1.455773 TCCGTCCTCATCAGCCGAT 60.456 57.895 0.00 0.00 0.00 4.18
924 4637 1.006805 CCGTCCTCATCAGCCGATC 60.007 63.158 0.00 0.00 0.00 3.69
925 4638 1.006805 CGTCCTCATCAGCCGATCC 60.007 63.158 0.00 0.00 0.00 3.36
926 4639 1.459455 CGTCCTCATCAGCCGATCCT 61.459 60.000 0.00 0.00 0.00 3.24
927 4640 0.316841 GTCCTCATCAGCCGATCCTC 59.683 60.000 0.00 0.00 0.00 3.71
928 4641 0.187117 TCCTCATCAGCCGATCCTCT 59.813 55.000 0.00 0.00 0.00 3.69
929 4642 1.047002 CCTCATCAGCCGATCCTCTT 58.953 55.000 0.00 0.00 0.00 2.85
930 4643 1.415659 CCTCATCAGCCGATCCTCTTT 59.584 52.381 0.00 0.00 0.00 2.52
931 4644 2.158842 CCTCATCAGCCGATCCTCTTTT 60.159 50.000 0.00 0.00 0.00 2.27
932 4645 3.129871 CTCATCAGCCGATCCTCTTTTC 58.870 50.000 0.00 0.00 0.00 2.29
933 4646 2.158900 TCATCAGCCGATCCTCTTTTCC 60.159 50.000 0.00 0.00 0.00 3.13
934 4647 0.541863 TCAGCCGATCCTCTTTTCCC 59.458 55.000 0.00 0.00 0.00 3.97
935 4648 0.464554 CAGCCGATCCTCTTTTCCCC 60.465 60.000 0.00 0.00 0.00 4.81
936 4649 0.914417 AGCCGATCCTCTTTTCCCCA 60.914 55.000 0.00 0.00 0.00 4.96
937 4650 0.183731 GCCGATCCTCTTTTCCCCAT 59.816 55.000 0.00 0.00 0.00 4.00
938 4651 1.815795 GCCGATCCTCTTTTCCCCATC 60.816 57.143 0.00 0.00 0.00 3.51
939 4652 1.202818 CCGATCCTCTTTTCCCCATCC 60.203 57.143 0.00 0.00 0.00 3.51
940 4653 1.771255 CGATCCTCTTTTCCCCATCCT 59.229 52.381 0.00 0.00 0.00 3.24
941 4654 2.224402 CGATCCTCTTTTCCCCATCCTC 60.224 54.545 0.00 0.00 0.00 3.71
942 4655 2.668850 TCCTCTTTTCCCCATCCTCT 57.331 50.000 0.00 0.00 0.00 3.69
943 4656 2.482494 TCCTCTTTTCCCCATCCTCTC 58.518 52.381 0.00 0.00 0.00 3.20
958 4671 4.023712 TCCTCTCCCTCTCTACTCCTAA 57.976 50.000 0.00 0.00 0.00 2.69
967 4680 5.075344 CCCTCTCTACTCCTAACCCTAGATT 59.925 48.000 0.00 0.00 0.00 2.40
993 4706 1.688311 CCATAACACTCCTCTCCCCGA 60.688 57.143 0.00 0.00 0.00 5.14
994 4707 2.108168 CATAACACTCCTCTCCCCGAA 58.892 52.381 0.00 0.00 0.00 4.30
1008 5044 1.519751 CCCGAACAACAATGGCGGAA 61.520 55.000 12.05 0.00 45.69 4.30
1062 5098 2.596046 AACATCCGGCGCAACCAA 60.596 55.556 10.83 0.00 39.03 3.67
1078 5114 2.439837 CAAGAAAAGCTTGCCCCCA 58.560 52.632 0.00 0.00 46.67 4.96
1234 5285 2.444706 CCCCGGATCTCAGCCTCA 60.445 66.667 0.73 0.00 0.00 3.86
1316 5373 0.394899 GACTTCAATGCTGGGAGGGG 60.395 60.000 0.00 0.00 0.00 4.79
1571 5631 1.202651 ACACAAGGTGACCTTCCTTCG 60.203 52.381 15.20 5.46 42.67 3.79
1757 6590 9.391006 TGTAATTCTATTTTGTGATGTACTCCC 57.609 33.333 0.00 0.00 0.00 4.30
1758 6591 9.614792 GTAATTCTATTTTGTGATGTACTCCCT 57.385 33.333 0.00 0.00 0.00 4.20
1759 6592 8.738645 AATTCTATTTTGTGATGTACTCCCTC 57.261 34.615 0.00 0.00 0.00 4.30
1760 6593 6.235231 TCTATTTTGTGATGTACTCCCTCC 57.765 41.667 0.00 0.00 0.00 4.30
1761 6594 3.328382 TTTTGTGATGTACTCCCTCCG 57.672 47.619 0.00 0.00 0.00 4.63
1762 6595 1.933021 TTGTGATGTACTCCCTCCGT 58.067 50.000 0.00 0.00 0.00 4.69
1763 6596 1.933021 TGTGATGTACTCCCTCCGTT 58.067 50.000 0.00 0.00 0.00 4.44
1764 6597 1.822990 TGTGATGTACTCCCTCCGTTC 59.177 52.381 0.00 0.00 0.00 3.95
1765 6598 1.136500 GTGATGTACTCCCTCCGTTCC 59.864 57.143 0.00 0.00 0.00 3.62
1766 6599 1.006758 TGATGTACTCCCTCCGTTCCT 59.993 52.381 0.00 0.00 0.00 3.36
1767 6600 2.242965 TGATGTACTCCCTCCGTTCCTA 59.757 50.000 0.00 0.00 0.00 2.94
1768 6601 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
1769 6602 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
1770 6603 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
1771 6604 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
1772 6605 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
1773 6606 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
1774 6607 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1775 6608 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1776 6609 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1777 6610 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
1778 6611 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
1779 6612 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1780 6613 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1781 6614 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
1782 6615 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
1809 6642 9.302345 AGACATTTCAAATGACTACTACATACG 57.698 33.333 17.30 0.00 0.00 3.06
1810 6643 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
1811 6644 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
1812 6645 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
1813 6646 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
1815 6648 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
1816 6649 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
1846 6679 9.262358 GACATATTTTAGAGTGTAGATTCACCC 57.738 37.037 0.00 0.00 38.91 4.61
1847 6680 8.768397 ACATATTTTAGAGTGTAGATTCACCCA 58.232 33.333 0.00 0.00 38.91 4.51
1848 6681 9.784531 CATATTTTAGAGTGTAGATTCACCCAT 57.215 33.333 0.00 0.00 38.91 4.00
1851 6684 8.934023 TTTTAGAGTGTAGATTCACCCATTTT 57.066 30.769 0.00 0.00 38.91 1.82
1852 6685 7.921786 TTAGAGTGTAGATTCACCCATTTTG 57.078 36.000 0.00 0.00 38.91 2.44
1853 6686 4.702131 AGAGTGTAGATTCACCCATTTTGC 59.298 41.667 0.00 0.00 38.91 3.68
1854 6687 4.666512 AGTGTAGATTCACCCATTTTGCT 58.333 39.130 0.00 0.00 38.91 3.91
1855 6688 5.815581 AGTGTAGATTCACCCATTTTGCTA 58.184 37.500 0.00 0.00 38.91 3.49
1856 6689 5.648092 AGTGTAGATTCACCCATTTTGCTAC 59.352 40.000 0.00 0.00 38.91 3.58
1857 6690 4.634004 TGTAGATTCACCCATTTTGCTACG 59.366 41.667 0.00 0.00 31.97 3.51
1858 6691 3.686016 AGATTCACCCATTTTGCTACGT 58.314 40.909 0.00 0.00 0.00 3.57
1859 6692 4.839121 AGATTCACCCATTTTGCTACGTA 58.161 39.130 0.00 0.00 0.00 3.57
1860 6693 5.437060 AGATTCACCCATTTTGCTACGTAT 58.563 37.500 0.00 0.00 0.00 3.06
1861 6694 4.955925 TTCACCCATTTTGCTACGTATG 57.044 40.909 0.00 0.00 0.00 2.39
1862 6695 3.945346 TCACCCATTTTGCTACGTATGT 58.055 40.909 0.00 0.00 0.00 2.29
1863 6696 5.087391 TCACCCATTTTGCTACGTATGTA 57.913 39.130 0.00 0.00 0.00 2.29
1892 6725 9.859427 CATTTATTGAAATGCCTAGAAAGACAA 57.141 29.630 0.00 0.00 44.05 3.18
1894 6727 8.635765 TTATTGAAATGCCTAGAAAGACAAGT 57.364 30.769 0.00 0.00 0.00 3.16
1895 6728 9.733556 TTATTGAAATGCCTAGAAAGACAAGTA 57.266 29.630 0.00 0.00 0.00 2.24
1896 6729 8.814038 ATTGAAATGCCTAGAAAGACAAGTAT 57.186 30.769 0.00 0.00 0.00 2.12
1897 6730 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
1898 6731 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
1899 6732 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
1901 6734 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
1902 6735 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
1903 6736 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
1904 6737 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
1905 6738 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
1906 6739 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
1907 6740 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
1908 6741 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
1909 6742 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
1910 6743 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
1911 6744 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
1935 6768 7.553044 GGAGTATTTCATTTACTTGGCTACAGT 59.447 37.037 0.00 0.00 30.15 3.55
1990 6823 6.441924 TGTCTTATGGACTTTGAGAAGGAGAT 59.558 38.462 0.00 0.00 44.74 2.75
1994 6827 6.821616 ATGGACTTTGAGAAGGAGATGTAT 57.178 37.500 0.00 0.00 37.19 2.29
2003 6836 8.783660 TTGAGAAGGAGATGTATAGTATGGTT 57.216 34.615 0.00 0.00 0.00 3.67
2198 7031 1.586422 AGCCACATATGCTTGCTACG 58.414 50.000 11.30 0.00 34.87 3.51
2283 7116 4.391405 AGCCTGAAGGTTTTCAAACTTG 57.609 40.909 2.55 0.00 42.48 3.16
2285 7118 4.098501 AGCCTGAAGGTTTTCAAACTTGAG 59.901 41.667 2.55 0.00 42.48 3.02
2433 7266 3.708563 AACATGTTTCTTGAACCACCG 57.291 42.857 4.92 0.00 37.45 4.94
2534 7367 2.166821 AATACCCGTGCGTTGTTACA 57.833 45.000 0.00 0.00 0.00 2.41
2693 7534 1.939974 TCATTCCTTCGATCCTTGCG 58.060 50.000 0.00 0.00 0.00 4.85
2749 7590 4.398988 TCTTCATCATGGAATTTGTTCCCG 59.601 41.667 4.86 0.00 40.39 5.14
2887 9069 5.413309 AGATATCCATCGGATTTGGACTC 57.587 43.478 2.53 3.90 45.71 3.36
3063 9245 6.166279 ACACGTCAACATCTTACAATCTGAT 58.834 36.000 0.00 0.00 0.00 2.90
3214 9397 8.843733 CGTCAAGTTTTCAGATCATGTAATTTG 58.156 33.333 0.00 0.00 0.00 2.32
3276 9459 2.290323 ACTACAATTCTCCCGCTTGCTT 60.290 45.455 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.886505 ACTTTTGTTCTAATCCGTGGCAA 59.113 39.130 0.00 0.00 0.00 4.52
3 4 3.365969 CCACTTTTGTTCTAATCCGTGGC 60.366 47.826 0.00 0.00 34.91 5.01
5 6 5.699458 ACTACCACTTTTGTTCTAATCCGTG 59.301 40.000 0.00 0.00 0.00 4.94
6 7 5.861727 ACTACCACTTTTGTTCTAATCCGT 58.138 37.500 0.00 0.00 0.00 4.69
9 10 8.626526 TGGAAAACTACCACTTTTGTTCTAATC 58.373 33.333 0.00 0.00 32.03 1.75
10 11 8.528044 TGGAAAACTACCACTTTTGTTCTAAT 57.472 30.769 0.00 0.00 32.03 1.73
11 12 7.941431 TGGAAAACTACCACTTTTGTTCTAA 57.059 32.000 0.00 0.00 32.03 2.10
23 24 3.764434 TGCTTTTGTGTGGAAAACTACCA 59.236 39.130 0.00 0.00 34.84 3.25
24 25 4.379339 TGCTTTTGTGTGGAAAACTACC 57.621 40.909 0.00 0.00 0.00 3.18
25 26 7.704899 ACTTTATGCTTTTGTGTGGAAAACTAC 59.295 33.333 0.00 0.00 0.00 2.73
28 29 6.238076 CCACTTTATGCTTTTGTGTGGAAAAC 60.238 38.462 0.00 0.00 44.21 2.43
30 31 5.105146 ACCACTTTATGCTTTTGTGTGGAAA 60.105 36.000 14.95 0.00 44.21 3.13
32 33 3.957497 ACCACTTTATGCTTTTGTGTGGA 59.043 39.130 14.95 0.00 44.21 4.02
33 34 4.320608 ACCACTTTATGCTTTTGTGTGG 57.679 40.909 0.00 0.00 46.11 4.17
34 35 6.072112 ACTACCACTTTATGCTTTTGTGTG 57.928 37.500 0.00 0.00 0.00 3.82
35 36 6.709018 AACTACCACTTTATGCTTTTGTGT 57.291 33.333 0.00 0.00 0.00 3.72
37 38 7.425606 CAGAAACTACCACTTTATGCTTTTGT 58.574 34.615 0.00 0.00 0.00 2.83
39 40 6.015434 CCCAGAAACTACCACTTTATGCTTTT 60.015 38.462 0.00 0.00 0.00 2.27
40 41 5.476945 CCCAGAAACTACCACTTTATGCTTT 59.523 40.000 0.00 0.00 0.00 3.51
41 42 5.010282 CCCAGAAACTACCACTTTATGCTT 58.990 41.667 0.00 0.00 0.00 3.91
42 43 4.042934 ACCCAGAAACTACCACTTTATGCT 59.957 41.667 0.00 0.00 0.00 3.79
43 44 4.332828 ACCCAGAAACTACCACTTTATGC 58.667 43.478 0.00 0.00 0.00 3.14
46 47 5.548836 ACCATACCCAGAAACTACCACTTTA 59.451 40.000 0.00 0.00 0.00 1.85
47 48 4.352893 ACCATACCCAGAAACTACCACTTT 59.647 41.667 0.00 0.00 0.00 2.66
49 50 3.527937 ACCATACCCAGAAACTACCACT 58.472 45.455 0.00 0.00 0.00 4.00
50 51 3.994931 ACCATACCCAGAAACTACCAC 57.005 47.619 0.00 0.00 0.00 4.16
51 52 4.351407 TGAAACCATACCCAGAAACTACCA 59.649 41.667 0.00 0.00 0.00 3.25
52 53 4.913784 TGAAACCATACCCAGAAACTACC 58.086 43.478 0.00 0.00 0.00 3.18
53 54 6.177610 TCATGAAACCATACCCAGAAACTAC 58.822 40.000 0.00 0.00 0.00 2.73
56 57 5.975693 TTCATGAAACCATACCCAGAAAC 57.024 39.130 5.45 0.00 0.00 2.78
57 58 6.496565 ACAATTCATGAAACCATACCCAGAAA 59.503 34.615 13.09 0.00 0.00 2.52
58 59 6.015918 ACAATTCATGAAACCATACCCAGAA 58.984 36.000 13.09 0.00 0.00 3.02
60 61 5.394443 CCACAATTCATGAAACCATACCCAG 60.394 44.000 13.09 0.00 0.00 4.45
61 62 4.465660 CCACAATTCATGAAACCATACCCA 59.534 41.667 13.09 0.00 0.00 4.51
62 63 4.466015 ACCACAATTCATGAAACCATACCC 59.534 41.667 13.09 0.00 0.00 3.69
63 64 5.659440 ACCACAATTCATGAAACCATACC 57.341 39.130 13.09 0.00 0.00 2.73
64 65 7.391148 ACTACCACAATTCATGAAACCATAC 57.609 36.000 13.09 0.00 0.00 2.39
65 66 8.415950 AAACTACCACAATTCATGAAACCATA 57.584 30.769 13.09 0.44 0.00 2.74
67 68 6.723298 AAACTACCACAATTCATGAAACCA 57.277 33.333 13.09 0.00 0.00 3.67
69 70 7.494298 ACCAAAAACTACCACAATTCATGAAAC 59.506 33.333 13.09 0.00 0.00 2.78
70 71 7.560368 ACCAAAAACTACCACAATTCATGAAA 58.440 30.769 13.09 0.00 0.00 2.69
71 72 7.118496 ACCAAAAACTACCACAATTCATGAA 57.882 32.000 11.26 11.26 0.00 2.57
72 73 6.723298 ACCAAAAACTACCACAATTCATGA 57.277 33.333 0.00 0.00 0.00 3.07
73 74 8.879342 TTAACCAAAAACTACCACAATTCATG 57.121 30.769 0.00 0.00 0.00 3.07
79 80 9.411189 AGAGTATTTAACCAAAAACTACCACAA 57.589 29.630 0.00 0.00 0.00 3.33
82 83 7.502895 TGCAGAGTATTTAACCAAAAACTACCA 59.497 33.333 0.00 0.00 0.00 3.25
83 84 7.878036 TGCAGAGTATTTAACCAAAAACTACC 58.122 34.615 0.00 0.00 0.00 3.18
84 85 9.908152 AATGCAGAGTATTTAACCAAAAACTAC 57.092 29.630 0.00 0.00 0.00 2.73
86 87 9.830975 AAAATGCAGAGTATTTAACCAAAAACT 57.169 25.926 0.00 0.00 0.00 2.66
87 88 9.862585 CAAAATGCAGAGTATTTAACCAAAAAC 57.137 29.630 0.00 0.00 0.00 2.43
88 89 9.823647 TCAAAATGCAGAGTATTTAACCAAAAA 57.176 25.926 0.00 0.00 0.00 1.94
89 90 9.474920 CTCAAAATGCAGAGTATTTAACCAAAA 57.525 29.630 0.00 0.00 0.00 2.44
90 91 8.637986 ACTCAAAATGCAGAGTATTTAACCAAA 58.362 29.630 4.62 0.00 42.92 3.28
91 92 8.081633 CACTCAAAATGCAGAGTATTTAACCAA 58.918 33.333 6.06 0.00 42.87 3.67
92 93 7.309133 CCACTCAAAATGCAGAGTATTTAACCA 60.309 37.037 6.06 0.00 42.87 3.67
93 94 7.029563 CCACTCAAAATGCAGAGTATTTAACC 58.970 38.462 6.06 0.00 42.87 2.85
94 95 7.750903 GTCCACTCAAAATGCAGAGTATTTAAC 59.249 37.037 6.06 0.00 42.87 2.01
95 96 7.094377 GGTCCACTCAAAATGCAGAGTATTTAA 60.094 37.037 6.06 0.00 42.87 1.52
97 98 5.183904 GGTCCACTCAAAATGCAGAGTATTT 59.816 40.000 6.06 0.00 42.87 1.40
98 99 4.702131 GGTCCACTCAAAATGCAGAGTATT 59.298 41.667 6.06 0.00 42.87 1.89
99 100 4.018960 AGGTCCACTCAAAATGCAGAGTAT 60.019 41.667 6.06 0.00 42.87 2.12
100 101 3.327757 AGGTCCACTCAAAATGCAGAGTA 59.672 43.478 6.06 0.00 42.87 2.59
101 102 2.107204 AGGTCCACTCAAAATGCAGAGT 59.893 45.455 0.69 0.69 45.46 3.24
102 103 2.787994 AGGTCCACTCAAAATGCAGAG 58.212 47.619 0.00 0.00 37.87 3.35
103 104 2.957402 AGGTCCACTCAAAATGCAGA 57.043 45.000 0.00 0.00 0.00 4.26
104 105 3.318839 TCAAAGGTCCACTCAAAATGCAG 59.681 43.478 0.00 0.00 0.00 4.41
105 106 3.295093 TCAAAGGTCCACTCAAAATGCA 58.705 40.909 0.00 0.00 0.00 3.96
108 109 4.768968 CCTCATCAAAGGTCCACTCAAAAT 59.231 41.667 0.00 0.00 0.00 1.82
109 110 4.144297 CCTCATCAAAGGTCCACTCAAAA 58.856 43.478 0.00 0.00 0.00 2.44
110 111 3.754965 CCTCATCAAAGGTCCACTCAAA 58.245 45.455 0.00 0.00 0.00 2.69
111 112 3.423539 CCTCATCAAAGGTCCACTCAA 57.576 47.619 0.00 0.00 0.00 3.02
122 123 2.439409 CTCACATGCCACCTCATCAAA 58.561 47.619 0.00 0.00 0.00 2.69
123 124 1.340308 CCTCACATGCCACCTCATCAA 60.340 52.381 0.00 0.00 0.00 2.57
125 126 0.254178 ACCTCACATGCCACCTCATC 59.746 55.000 0.00 0.00 0.00 2.92
126 127 0.034767 CACCTCACATGCCACCTCAT 60.035 55.000 0.00 0.00 0.00 2.90
127 128 1.126948 TCACCTCACATGCCACCTCA 61.127 55.000 0.00 0.00 0.00 3.86
128 129 0.036732 TTCACCTCACATGCCACCTC 59.963 55.000 0.00 0.00 0.00 3.85
130 131 0.883833 CTTTCACCTCACATGCCACC 59.116 55.000 0.00 0.00 0.00 4.61
131 132 0.883833 CCTTTCACCTCACATGCCAC 59.116 55.000 0.00 0.00 0.00 5.01
132 133 0.478072 ACCTTTCACCTCACATGCCA 59.522 50.000 0.00 0.00 0.00 4.92
133 134 0.883833 CACCTTTCACCTCACATGCC 59.116 55.000 0.00 0.00 0.00 4.40
134 135 1.267806 CACACCTTTCACCTCACATGC 59.732 52.381 0.00 0.00 0.00 4.06
137 138 0.254462 TGCACACCTTTCACCTCACA 59.746 50.000 0.00 0.00 0.00 3.58
138 139 1.267806 CATGCACACCTTTCACCTCAC 59.732 52.381 0.00 0.00 0.00 3.51
139 140 1.142667 TCATGCACACCTTTCACCTCA 59.857 47.619 0.00 0.00 0.00 3.86
142 143 1.896220 TCTCATGCACACCTTTCACC 58.104 50.000 0.00 0.00 0.00 4.02
146 147 3.759581 AGTTGATCTCATGCACACCTTT 58.240 40.909 0.00 0.00 0.00 3.11
151 152 7.281841 TCCATTATTAGTTGATCTCATGCACA 58.718 34.615 0.00 0.00 0.00 4.57
152 153 7.734924 TCCATTATTAGTTGATCTCATGCAC 57.265 36.000 0.00 0.00 0.00 4.57
153 154 8.929260 ATTCCATTATTAGTTGATCTCATGCA 57.071 30.769 0.00 0.00 0.00 3.96
180 181 4.218200 CCACCACTACATGCATGAGAAAAA 59.782 41.667 32.75 9.54 0.00 1.94
181 182 3.758023 CCACCACTACATGCATGAGAAAA 59.242 43.478 32.75 11.19 0.00 2.29
182 183 3.346315 CCACCACTACATGCATGAGAAA 58.654 45.455 32.75 13.52 0.00 2.52
184 185 1.210234 CCCACCACTACATGCATGAGA 59.790 52.381 32.75 18.18 0.00 3.27
189 190 0.039472 AATGCCCACCACTACATGCA 59.961 50.000 0.00 0.00 0.00 3.96
191 192 2.445427 TCAAATGCCCACCACTACATG 58.555 47.619 0.00 0.00 0.00 3.21
192 193 2.897271 TCAAATGCCCACCACTACAT 57.103 45.000 0.00 0.00 0.00 2.29
193 194 2.040947 TCATCAAATGCCCACCACTACA 59.959 45.455 0.00 0.00 0.00 2.74
196 197 1.617804 CCTCATCAAATGCCCACCACT 60.618 52.381 0.00 0.00 0.00 4.00
197 198 0.819582 CCTCATCAAATGCCCACCAC 59.180 55.000 0.00 0.00 0.00 4.16
198 199 0.409092 ACCTCATCAAATGCCCACCA 59.591 50.000 0.00 0.00 0.00 4.17
201 202 0.971959 GCCACCTCATCAAATGCCCA 60.972 55.000 0.00 0.00 0.00 5.36
206 207 1.167851 CACACGCCACCTCATCAAAT 58.832 50.000 0.00 0.00 0.00 2.32
207 208 0.179032 ACACACGCCACCTCATCAAA 60.179 50.000 0.00 0.00 0.00 2.69
208 209 0.884259 CACACACGCCACCTCATCAA 60.884 55.000 0.00 0.00 0.00 2.57
210 211 2.680913 GCACACACGCCACCTCATC 61.681 63.158 0.00 0.00 0.00 2.92
211 212 2.669569 GCACACACGCCACCTCAT 60.670 61.111 0.00 0.00 0.00 2.90
212 213 3.474486 ATGCACACACGCCACCTCA 62.474 57.895 0.00 0.00 0.00 3.86
215 216 2.844451 AACATGCACACACGCCACC 61.844 57.895 0.00 0.00 0.00 4.61
216 217 1.658102 CAACATGCACACACGCCAC 60.658 57.895 0.00 0.00 0.00 5.01
217 218 1.784036 CTCAACATGCACACACGCCA 61.784 55.000 0.00 0.00 0.00 5.69
219 220 0.518636 ATCTCAACATGCACACACGC 59.481 50.000 0.00 0.00 0.00 5.34
220 221 4.403015 TTTATCTCAACATGCACACACG 57.597 40.909 0.00 0.00 0.00 4.49
222 223 6.413892 TCCTATTTATCTCAACATGCACACA 58.586 36.000 0.00 0.00 0.00 3.72
224 225 8.432013 ACTATCCTATTTATCTCAACATGCACA 58.568 33.333 0.00 0.00 0.00 4.57
271 272 9.661954 AGTGGAAGTCAGAATAAGAATCCTATA 57.338 33.333 0.00 0.00 0.00 1.31
274 275 6.882768 AGTGGAAGTCAGAATAAGAATCCT 57.117 37.500 0.00 0.00 0.00 3.24
275 276 7.929941 AAAGTGGAAGTCAGAATAAGAATCC 57.070 36.000 0.00 0.00 0.00 3.01
277 278 9.620259 GGATAAAGTGGAAGTCAGAATAAGAAT 57.380 33.333 0.00 0.00 0.00 2.40
281 282 6.216662 TGGGGATAAAGTGGAAGTCAGAATAA 59.783 38.462 0.00 0.00 0.00 1.40
284 285 3.913799 TGGGGATAAAGTGGAAGTCAGAA 59.086 43.478 0.00 0.00 0.00 3.02
285 286 3.526899 TGGGGATAAAGTGGAAGTCAGA 58.473 45.455 0.00 0.00 0.00 3.27
315 3939 9.520515 ACATGTTTACCAATTAGACTTGAAGAT 57.479 29.630 0.00 0.00 0.00 2.40
570 4194 0.181350 GTCCAGCCACCCATCTAAGG 59.819 60.000 0.00 0.00 0.00 2.69
631 4255 1.610102 GGAAAGAAGAGCAGCAGCAGA 60.610 52.381 3.17 0.00 45.49 4.26
632 4256 0.803740 GGAAAGAAGAGCAGCAGCAG 59.196 55.000 3.17 0.00 45.49 4.24
633 4257 0.607489 GGGAAAGAAGAGCAGCAGCA 60.607 55.000 3.17 0.00 45.49 4.41
634 4258 1.311651 GGGGAAAGAAGAGCAGCAGC 61.312 60.000 0.00 0.00 42.56 5.25
635 4259 0.037303 TGGGGAAAGAAGAGCAGCAG 59.963 55.000 0.00 0.00 0.00 4.24
636 4260 0.250901 GTGGGGAAAGAAGAGCAGCA 60.251 55.000 0.00 0.00 0.00 4.41
637 4261 1.301677 CGTGGGGAAAGAAGAGCAGC 61.302 60.000 0.00 0.00 0.00 5.25
638 4262 1.301677 GCGTGGGGAAAGAAGAGCAG 61.302 60.000 0.00 0.00 0.00 4.24
639 4263 1.302511 GCGTGGGGAAAGAAGAGCA 60.303 57.895 0.00 0.00 0.00 4.26
640 4264 2.041115 GGCGTGGGGAAAGAAGAGC 61.041 63.158 0.00 0.00 0.00 4.09
641 4265 0.391793 GAGGCGTGGGGAAAGAAGAG 60.392 60.000 0.00 0.00 0.00 2.85
642 4266 0.836400 AGAGGCGTGGGGAAAGAAGA 60.836 55.000 0.00 0.00 0.00 2.87
643 4267 0.674895 CAGAGGCGTGGGGAAAGAAG 60.675 60.000 0.00 0.00 0.00 2.85
644 4268 1.374947 CAGAGGCGTGGGGAAAGAA 59.625 57.895 0.00 0.00 0.00 2.52
645 4269 3.068881 CAGAGGCGTGGGGAAAGA 58.931 61.111 0.00 0.00 0.00 2.52
646 4270 2.747855 GCAGAGGCGTGGGGAAAG 60.748 66.667 0.00 0.00 0.00 2.62
656 4280 1.120795 ATAGGAGGAGCAGCAGAGGC 61.121 60.000 0.00 0.00 41.61 4.70
657 4281 0.968405 GATAGGAGGAGCAGCAGAGG 59.032 60.000 0.00 0.00 0.00 3.69
658 4282 1.702182 TGATAGGAGGAGCAGCAGAG 58.298 55.000 0.00 0.00 0.00 3.35
659 4283 1.759445 GTTGATAGGAGGAGCAGCAGA 59.241 52.381 0.00 0.00 0.00 4.26
674 4298 1.202855 AGGAGCAGCAACAGTGTTGAT 60.203 47.619 34.65 28.20 38.17 2.57
697 4321 2.323059 GAAGCAGCAGCAGTTTTAAGC 58.677 47.619 3.17 0.00 45.49 3.09
713 4425 0.321996 AAGACGTGGGAAGAGGAAGC 59.678 55.000 0.00 0.00 0.00 3.86
716 4428 0.034896 GCAAAGACGTGGGAAGAGGA 59.965 55.000 0.00 0.00 0.00 3.71
783 4496 2.297129 GGGAAGAGGGAGCAGCAGT 61.297 63.158 0.00 0.00 0.00 4.40
793 4506 2.549169 GAAGGGCAGCAGGGAAGAGG 62.549 65.000 0.00 0.00 0.00 3.69
794 4507 1.077858 GAAGGGCAGCAGGGAAGAG 60.078 63.158 0.00 0.00 0.00 2.85
795 4508 1.539869 AGAAGGGCAGCAGGGAAGA 60.540 57.895 0.00 0.00 0.00 2.87
796 4509 1.077858 GAGAAGGGCAGCAGGGAAG 60.078 63.158 0.00 0.00 0.00 3.46
877 4590 5.929992 CGATCTACAGTTAGGAGTAGAGAGG 59.070 48.000 8.11 0.00 46.86 3.69
878 4591 6.751157 TCGATCTACAGTTAGGAGTAGAGAG 58.249 44.000 8.11 5.12 46.86 3.20
879 4592 6.239373 CCTCGATCTACAGTTAGGAGTAGAGA 60.239 46.154 8.11 1.46 46.86 3.10
880 4593 5.929992 CCTCGATCTACAGTTAGGAGTAGAG 59.070 48.000 8.11 0.00 46.86 2.43
882 4595 5.613329 ACCTCGATCTACAGTTAGGAGTAG 58.387 45.833 0.00 0.00 39.19 2.57
883 4596 5.454471 GGACCTCGATCTACAGTTAGGAGTA 60.454 48.000 0.00 0.00 0.00 2.59
884 4597 4.453751 GACCTCGATCTACAGTTAGGAGT 58.546 47.826 0.00 0.00 0.00 3.85
885 4598 3.816523 GGACCTCGATCTACAGTTAGGAG 59.183 52.174 0.00 0.00 0.00 3.69
886 4599 3.743584 CGGACCTCGATCTACAGTTAGGA 60.744 52.174 0.00 0.00 42.43 2.94
887 4600 2.548904 CGGACCTCGATCTACAGTTAGG 59.451 54.545 0.00 0.00 42.43 2.69
888 4601 3.204526 ACGGACCTCGATCTACAGTTAG 58.795 50.000 0.00 0.00 42.43 2.34
889 4602 3.201290 GACGGACCTCGATCTACAGTTA 58.799 50.000 0.00 0.00 42.43 2.24
890 4603 2.015587 GACGGACCTCGATCTACAGTT 58.984 52.381 0.00 0.00 42.43 3.16
891 4604 1.666054 GACGGACCTCGATCTACAGT 58.334 55.000 0.00 0.00 42.43 3.55
892 4605 0.945813 GGACGGACCTCGATCTACAG 59.054 60.000 0.00 0.00 42.43 2.74
893 4606 3.091318 GGACGGACCTCGATCTACA 57.909 57.895 0.00 0.00 42.43 2.74
903 4616 2.501610 GGCTGATGAGGACGGACC 59.498 66.667 0.00 0.00 39.35 4.46
904 4617 1.739338 ATCGGCTGATGAGGACGGAC 61.739 60.000 7.39 0.00 32.21 4.79
905 4618 1.455773 ATCGGCTGATGAGGACGGA 60.456 57.895 7.39 0.00 32.21 4.69
906 4619 1.006805 GATCGGCTGATGAGGACGG 60.007 63.158 14.17 0.00 34.09 4.79
907 4620 1.006805 GGATCGGCTGATGAGGACG 60.007 63.158 14.17 0.00 34.09 4.79
908 4621 0.316841 GAGGATCGGCTGATGAGGAC 59.683 60.000 14.17 0.00 34.09 3.85
909 4622 0.187117 AGAGGATCGGCTGATGAGGA 59.813 55.000 14.17 0.00 42.67 3.71
910 4623 1.047002 AAGAGGATCGGCTGATGAGG 58.953 55.000 14.17 0.00 42.67 3.86
911 4624 2.906691 AAAGAGGATCGGCTGATGAG 57.093 50.000 14.17 0.00 42.67 2.90
912 4625 2.158900 GGAAAAGAGGATCGGCTGATGA 60.159 50.000 14.17 0.00 42.67 2.92
913 4626 2.216898 GGAAAAGAGGATCGGCTGATG 58.783 52.381 14.17 0.00 42.67 3.07
914 4627 1.141858 GGGAAAAGAGGATCGGCTGAT 59.858 52.381 8.05 8.05 42.67 2.90
915 4628 0.541863 GGGAAAAGAGGATCGGCTGA 59.458 55.000 0.00 0.00 42.67 4.26
916 4629 0.464554 GGGGAAAAGAGGATCGGCTG 60.465 60.000 0.00 0.00 42.67 4.85
917 4630 0.914417 TGGGGAAAAGAGGATCGGCT 60.914 55.000 0.00 0.00 42.67 5.52
918 4631 0.183731 ATGGGGAAAAGAGGATCGGC 59.816 55.000 0.00 0.00 42.67 5.54
919 4632 1.202818 GGATGGGGAAAAGAGGATCGG 60.203 57.143 0.00 0.00 42.67 4.18
920 4633 1.771255 AGGATGGGGAAAAGAGGATCG 59.229 52.381 0.00 0.00 42.67 3.69
921 4634 3.052329 AGAGGATGGGGAAAAGAGGATC 58.948 50.000 0.00 0.00 0.00 3.36
922 4635 3.052329 GAGAGGATGGGGAAAAGAGGAT 58.948 50.000 0.00 0.00 0.00 3.24
923 4636 2.482494 GAGAGGATGGGGAAAAGAGGA 58.518 52.381 0.00 0.00 0.00 3.71
924 4637 1.492599 GGAGAGGATGGGGAAAAGAGG 59.507 57.143 0.00 0.00 0.00 3.69
925 4638 1.492599 GGGAGAGGATGGGGAAAAGAG 59.507 57.143 0.00 0.00 0.00 2.85
926 4639 1.082879 AGGGAGAGGATGGGGAAAAGA 59.917 52.381 0.00 0.00 0.00 2.52
927 4640 1.492599 GAGGGAGAGGATGGGGAAAAG 59.507 57.143 0.00 0.00 0.00 2.27
928 4641 1.082879 AGAGGGAGAGGATGGGGAAAA 59.917 52.381 0.00 0.00 0.00 2.29
929 4642 0.725133 AGAGGGAGAGGATGGGGAAA 59.275 55.000 0.00 0.00 0.00 3.13
930 4643 0.266152 GAGAGGGAGAGGATGGGGAA 59.734 60.000 0.00 0.00 0.00 3.97
931 4644 0.631998 AGAGAGGGAGAGGATGGGGA 60.632 60.000 0.00 0.00 0.00 4.81
932 4645 1.162505 TAGAGAGGGAGAGGATGGGG 58.837 60.000 0.00 0.00 0.00 4.96
933 4646 1.786441 AGTAGAGAGGGAGAGGATGGG 59.214 57.143 0.00 0.00 0.00 4.00
934 4647 2.225017 GGAGTAGAGAGGGAGAGGATGG 60.225 59.091 0.00 0.00 0.00 3.51
935 4648 2.716424 AGGAGTAGAGAGGGAGAGGATG 59.284 54.545 0.00 0.00 0.00 3.51
936 4649 3.089421 AGGAGTAGAGAGGGAGAGGAT 57.911 52.381 0.00 0.00 0.00 3.24
937 4650 2.598288 AGGAGTAGAGAGGGAGAGGA 57.402 55.000 0.00 0.00 0.00 3.71
938 4651 3.181437 GGTTAGGAGTAGAGAGGGAGAGG 60.181 56.522 0.00 0.00 0.00 3.69
939 4652 3.181437 GGGTTAGGAGTAGAGAGGGAGAG 60.181 56.522 0.00 0.00 0.00 3.20
940 4653 2.784682 GGGTTAGGAGTAGAGAGGGAGA 59.215 54.545 0.00 0.00 0.00 3.71
941 4654 2.787035 AGGGTTAGGAGTAGAGAGGGAG 59.213 54.545 0.00 0.00 0.00 4.30
942 4655 2.874447 AGGGTTAGGAGTAGAGAGGGA 58.126 52.381 0.00 0.00 0.00 4.20
943 4656 3.982052 TCTAGGGTTAGGAGTAGAGAGGG 59.018 52.174 0.00 0.00 0.00 4.30
958 4671 4.409247 GTGTTATGGACCTCAATCTAGGGT 59.591 45.833 0.00 0.00 41.32 4.34
967 4680 3.366396 GAGAGGAGTGTTATGGACCTCA 58.634 50.000 0.00 0.00 46.43 3.86
993 4706 0.591170 CGTCTTCCGCCATTGTTGTT 59.409 50.000 0.00 0.00 0.00 2.83
994 4707 1.234615 CCGTCTTCCGCCATTGTTGT 61.235 55.000 0.00 0.00 34.38 3.32
1014 5050 1.134075 GCGCTCGTAGTCGTTGAGA 59.866 57.895 0.00 0.00 38.33 3.27
1062 5098 0.615827 GGATGGGGGCAAGCTTTTCT 60.616 55.000 0.00 0.00 0.00 2.52
1316 5373 4.899687 CGCGCATCAGCACCATGC 62.900 66.667 8.75 4.82 45.46 4.06
1416 5473 2.583143 CCGATATTCCCCCTTTTGTCC 58.417 52.381 0.00 0.00 0.00 4.02
1748 6581 3.393426 TTAGGAACGGAGGGAGTACAT 57.607 47.619 0.00 0.00 0.00 2.29
1750 6583 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
1751 6584 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
1752 6585 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
1753 6586 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
1754 6587 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1755 6588 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1756 6589 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
1783 6616 9.302345 CGTATGTAGTAGTCATTTGAAATGTCT 57.698 33.333 18.62 18.62 0.00 3.41
1784 6617 8.540492 CCGTATGTAGTAGTCATTTGAAATGTC 58.460 37.037 16.62 11.74 0.00 3.06
1785 6618 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
1786 6619 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
1787 6620 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
1788 6621 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
1789 6622 7.778083 ACATCCGTATGTAGTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
1790 6623 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
1820 6653 9.262358 GGGTGAATCTACACTCTAAAATATGTC 57.738 37.037 0.00 0.00 38.14 3.06
1821 6654 8.768397 TGGGTGAATCTACACTCTAAAATATGT 58.232 33.333 0.00 0.00 41.33 2.29
1822 6655 9.784531 ATGGGTGAATCTACACTCTAAAATATG 57.215 33.333 0.00 0.00 41.33 1.78
1825 6658 9.533831 AAAATGGGTGAATCTACACTCTAAAAT 57.466 29.630 0.00 0.00 41.33 1.82
1826 6659 8.792633 CAAAATGGGTGAATCTACACTCTAAAA 58.207 33.333 0.00 0.00 41.33 1.52
1827 6660 7.094377 GCAAAATGGGTGAATCTACACTCTAAA 60.094 37.037 0.00 0.00 41.33 1.85
1828 6661 6.374333 GCAAAATGGGTGAATCTACACTCTAA 59.626 38.462 0.00 0.00 41.33 2.10
1829 6662 5.880332 GCAAAATGGGTGAATCTACACTCTA 59.120 40.000 0.00 0.00 41.33 2.43
1830 6663 4.702131 GCAAAATGGGTGAATCTACACTCT 59.298 41.667 0.00 0.00 41.33 3.24
1831 6664 4.702131 AGCAAAATGGGTGAATCTACACTC 59.298 41.667 0.00 0.00 41.16 3.51
1832 6665 4.666512 AGCAAAATGGGTGAATCTACACT 58.333 39.130 0.00 0.00 40.22 3.55
1833 6666 5.447279 CGTAGCAAAATGGGTGAATCTACAC 60.447 44.000 0.00 0.00 39.70 2.90
1834 6667 4.634004 CGTAGCAAAATGGGTGAATCTACA 59.366 41.667 0.00 0.00 0.00 2.74
1835 6668 4.634443 ACGTAGCAAAATGGGTGAATCTAC 59.366 41.667 0.00 0.00 0.00 2.59
1836 6669 4.839121 ACGTAGCAAAATGGGTGAATCTA 58.161 39.130 0.00 0.00 0.00 1.98
1837 6670 3.686016 ACGTAGCAAAATGGGTGAATCT 58.314 40.909 0.00 0.00 0.00 2.40
1838 6671 5.065988 ACATACGTAGCAAAATGGGTGAATC 59.934 40.000 0.08 0.00 0.00 2.52
1839 6672 4.947388 ACATACGTAGCAAAATGGGTGAAT 59.053 37.500 0.08 0.00 0.00 2.57
1840 6673 4.328536 ACATACGTAGCAAAATGGGTGAA 58.671 39.130 0.08 0.00 0.00 3.18
1841 6674 3.945346 ACATACGTAGCAAAATGGGTGA 58.055 40.909 0.08 0.00 0.00 4.02
1842 6675 5.403897 CTACATACGTAGCAAAATGGGTG 57.596 43.478 0.08 0.00 38.84 4.61
1868 6701 9.077885 ACTTGTCTTTCTAGGCATTTCAATAAA 57.922 29.630 0.00 0.00 35.56 1.40
1869 6702 8.635765 ACTTGTCTTTCTAGGCATTTCAATAA 57.364 30.769 0.00 0.00 35.56 1.40
1870 6703 9.905713 ATACTTGTCTTTCTAGGCATTTCAATA 57.094 29.630 0.00 0.00 35.56 1.90
1871 6704 8.814038 ATACTTGTCTTTCTAGGCATTTCAAT 57.186 30.769 0.00 0.00 35.56 2.57
1872 6705 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
1873 6706 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
1875 6708 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
1876 6709 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
1877 6710 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
1878 6711 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
1879 6712 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
1880 6713 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
1881 6714 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
1882 6715 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
1883 6716 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
1884 6717 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
1885 6718 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
1886 6719 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
1887 6720 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
1888 6721 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
1889 6722 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
1890 6723 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
1891 6724 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
1892 6725 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
1893 6726 6.416631 AATACTCCCTCCGTTCCTAAATAC 57.583 41.667 0.00 0.00 0.00 1.89
1894 6727 6.612456 TGAAATACTCCCTCCGTTCCTAAATA 59.388 38.462 0.00 0.00 0.00 1.40
1895 6728 5.427481 TGAAATACTCCCTCCGTTCCTAAAT 59.573 40.000 0.00 0.00 0.00 1.40
1896 6729 4.778958 TGAAATACTCCCTCCGTTCCTAAA 59.221 41.667 0.00 0.00 0.00 1.85
1897 6730 4.355549 TGAAATACTCCCTCCGTTCCTAA 58.644 43.478 0.00 0.00 0.00 2.69
1898 6731 3.985127 TGAAATACTCCCTCCGTTCCTA 58.015 45.455 0.00 0.00 0.00 2.94
1899 6732 2.829023 TGAAATACTCCCTCCGTTCCT 58.171 47.619 0.00 0.00 0.00 3.36
1900 6733 3.840124 ATGAAATACTCCCTCCGTTCC 57.160 47.619 0.00 0.00 0.00 3.62
1901 6734 6.346896 AGTAAATGAAATACTCCCTCCGTTC 58.653 40.000 0.00 0.00 0.00 3.95
1902 6735 6.309389 AGTAAATGAAATACTCCCTCCGTT 57.691 37.500 0.00 0.00 0.00 4.44
1903 6736 5.952347 AGTAAATGAAATACTCCCTCCGT 57.048 39.130 0.00 0.00 0.00 4.69
1904 6737 5.527582 CCAAGTAAATGAAATACTCCCTCCG 59.472 44.000 0.00 0.00 32.54 4.63
1905 6738 5.299531 GCCAAGTAAATGAAATACTCCCTCC 59.700 44.000 0.00 0.00 32.54 4.30
1906 6739 6.122964 AGCCAAGTAAATGAAATACTCCCTC 58.877 40.000 0.00 0.00 32.54 4.30
1907 6740 6.079712 AGCCAAGTAAATGAAATACTCCCT 57.920 37.500 0.00 0.00 32.54 4.20
1908 6741 6.826741 TGTAGCCAAGTAAATGAAATACTCCC 59.173 38.462 0.00 0.00 32.54 4.30
1909 6742 7.553044 ACTGTAGCCAAGTAAATGAAATACTCC 59.447 37.037 0.00 0.00 32.54 3.85
1910 6743 8.494016 ACTGTAGCCAAGTAAATGAAATACTC 57.506 34.615 0.00 0.00 32.54 2.59
1911 6744 8.863872 AACTGTAGCCAAGTAAATGAAATACT 57.136 30.769 0.00 0.00 35.15 2.12
1935 6768 3.118261 CCCTGATGGCTAGAGCTGTAAAA 60.118 47.826 0.00 0.00 41.70 1.52
1990 6823 9.220906 ACTCCCTTAAATGAACCATACTATACA 57.779 33.333 0.00 0.00 0.00 2.29
1994 6827 6.634039 GCCACTCCCTTAAATGAACCATACTA 60.634 42.308 0.00 0.00 0.00 1.82
2003 6836 1.992557 ACAGGCCACTCCCTTAAATGA 59.007 47.619 5.01 0.00 31.24 2.57
2010 6843 1.065418 CGAATAAACAGGCCACTCCCT 60.065 52.381 5.01 0.00 34.93 4.20
2198 7031 2.095718 GGCTGTTTGATCCGTTGAACTC 60.096 50.000 0.00 0.00 0.00 3.01
2364 7197 5.280011 CCTTCTAAGCAAGTTGAAGGGTAGA 60.280 44.000 7.16 2.68 46.96 2.59
2433 7266 8.662781 TTTATTGAGTCTAGCCATGACATAAC 57.337 34.615 0.00 0.00 36.94 1.89
2480 7313 4.448891 CGATATATTTGCACAACTCGCAG 58.551 43.478 0.00 0.00 41.18 5.18
2481 7314 3.303066 GCGATATATTTGCACAACTCGCA 60.303 43.478 17.42 0.00 46.75 5.10
2534 7367 9.884636 TGCATTATATAGTTTACTGTTGTCACT 57.115 29.630 0.00 0.00 0.00 3.41
2693 7534 3.866910 TGAAAGAACCAACGTGTGTAGTC 59.133 43.478 0.00 0.00 0.00 2.59
2749 7590 3.344515 ACTTAATTCTGGGAAAGACGGC 58.655 45.455 0.00 0.00 33.46 5.68
2780 7622 0.107945 GTTCCTCTCGGCTCTTGCAT 60.108 55.000 0.00 0.00 41.91 3.96
2784 7626 2.303022 TCAAATGTTCCTCTCGGCTCTT 59.697 45.455 0.00 0.00 0.00 2.85
2887 9069 8.735692 AAAAATTATATTTGAATGGCCTGGTG 57.264 30.769 3.32 0.00 0.00 4.17
3214 9397 0.955428 TGAATGAACGCCTGCTGGAC 60.955 55.000 14.77 3.95 34.57 4.02
3261 9444 0.107459 GAGGAAGCAAGCGGGAGAAT 60.107 55.000 0.00 0.00 0.00 2.40
3306 9489 1.132527 TCTTCTTCAGGGTTGGGAGGA 60.133 52.381 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.