Multiple sequence alignment - TraesCS1A01G091300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G091300 chr1A 100.000 6774 0 0 1 6774 82953476 82946703 0.000000e+00 12510.0
1 TraesCS1A01G091300 chr1A 90.947 243 19 2 1 240 126483736 126483494 2.360000e-84 324.0
2 TraesCS1A01G091300 chr1A 82.796 93 11 4 6475 6562 250197784 250197876 2.030000e-10 78.7
3 TraesCS1A01G091300 chr1D 96.771 3531 85 11 2960 6463 87094429 87090901 0.000000e+00 5862.0
4 TraesCS1A01G091300 chr1D 94.678 1954 62 21 830 2756 87096384 87094446 0.000000e+00 2994.0
5 TraesCS1A01G091300 chr1D 90.323 434 29 7 397 820 87096933 87096503 2.130000e-154 556.0
6 TraesCS1A01G091300 chr1D 86.634 202 18 1 6566 6758 87090904 87090703 1.480000e-51 215.0
7 TraesCS1A01G091300 chr1B 95.039 2721 88 18 3478 6175 140298220 140295524 0.000000e+00 4233.0
8 TraesCS1A01G091300 chr1B 92.453 2491 102 37 397 2836 140301242 140298787 0.000000e+00 3480.0
9 TraesCS1A01G091300 chr1B 92.270 608 37 7 2839 3445 140298819 140298221 0.000000e+00 854.0
10 TraesCS1A01G091300 chr1B 83.306 617 60 23 6174 6758 140295442 140294837 4.650000e-146 529.0
11 TraesCS1A01G091300 chr2A 92.213 244 15 3 1 240 382369937 382369694 6.510000e-90 342.0
12 TraesCS1A01G091300 chr2A 90.984 244 18 3 1 240 617840953 617840710 6.550000e-85 326.0
13 TraesCS1A01G091300 chr2A 90.871 241 18 3 1 238 164299790 164300029 3.050000e-83 320.0
14 TraesCS1A01G091300 chr2A 90.535 243 20 2 1 240 65192444 65192202 1.100000e-82 318.0
15 TraesCS1A01G091300 chr2A 85.227 88 6 2 6480 6560 678422064 678421977 4.350000e-12 84.2
16 TraesCS1A01G091300 chr3A 91.020 245 18 3 1 241 438357388 438357144 1.820000e-85 327.0
17 TraesCS1A01G091300 chr3A 83.908 87 8 4 6480 6560 207218981 207218895 2.030000e-10 78.7
18 TraesCS1A01G091300 chr7D 90.909 242 18 3 1 238 253096355 253096114 8.470000e-84 322.0
19 TraesCS1A01G091300 chr7D 88.710 124 12 2 242 363 253096233 253096110 4.230000e-32 150.0
20 TraesCS1A01G091300 chr7D 84.091 88 8 4 6480 6561 40772952 40772865 5.630000e-11 80.5
21 TraesCS1A01G091300 chr4D 90.909 242 19 2 1 239 82797637 82797396 8.470000e-84 322.0
22 TraesCS1A01G091300 chr4D 89.916 119 11 1 242 359 335743733 335743851 1.180000e-32 152.0
23 TraesCS1A01G091300 chr4D 88.000 75 9 0 6480 6554 421087726 421087800 9.360000e-14 89.8
24 TraesCS1A01G091300 chr3D 90.244 246 19 4 1 241 303097756 303097511 3.940000e-82 316.0
25 TraesCS1A01G091300 chr3D 87.200 125 13 3 242 364 29407371 29407494 9.160000e-29 139.0
26 TraesCS1A01G091300 chr7A 87.857 140 13 4 242 377 475168493 475168354 1.960000e-35 161.0
27 TraesCS1A01G091300 chr5D 90.323 124 11 1 242 364 528877794 528877671 1.960000e-35 161.0
28 TraesCS1A01G091300 chr5D 88.800 125 12 2 242 364 413054855 413054979 1.180000e-32 152.0
29 TraesCS1A01G091300 chr7B 88.430 121 13 1 242 361 655871994 655871874 1.970000e-30 145.0
30 TraesCS1A01G091300 chr2B 88.333 120 13 1 242 360 405533633 405533752 7.080000e-30 143.0
31 TraesCS1A01G091300 chr6D 87.302 126 11 5 242 364 285309017 285308894 9.160000e-29 139.0
32 TraesCS1A01G091300 chr2D 86.364 88 10 1 6474 6559 112870836 112870923 2.010000e-15 95.3
33 TraesCS1A01G091300 chr5B 85.882 85 9 2 6478 6560 466779761 466779844 3.370000e-13 87.9
34 TraesCS1A01G091300 chr5B 85.882 85 9 2 6478 6560 466779846 466779763 3.370000e-13 87.9
35 TraesCS1A01G091300 chr6A 84.706 85 7 2 6481 6559 455988886 455988970 5.630000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G091300 chr1A 82946703 82953476 6773 True 12510.00 12510 100.0000 1 6774 1 chr1A.!!$R1 6773
1 TraesCS1A01G091300 chr1D 87090703 87096933 6230 True 2406.75 5862 92.1015 397 6758 4 chr1D.!!$R1 6361
2 TraesCS1A01G091300 chr1B 140294837 140301242 6405 True 2274.00 4233 90.7670 397 6758 4 chr1B.!!$R1 6361

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
376 377 0.034477 CCCTAAACAGCCCCGTTCAT 60.034 55.000 0.00 0.00 0.00 2.57 F
399 400 0.396556 AAAGGAACAACAGCCCCGTT 60.397 50.000 0.00 0.00 0.00 4.44 F
1429 1605 0.320050 GATGATCGCCTCCTCCTTCC 59.680 60.000 0.00 0.00 0.00 3.46 F
2317 2496 1.623311 CCCATTTCTGTGGTTTTCCCC 59.377 52.381 0.00 0.00 37.57 4.81 F
2624 2808 2.573462 AGCTGTGAGGAAAGGCTAATGA 59.427 45.455 0.00 0.00 0.00 2.57 F
3473 3665 3.120321 AGTTGATGTGTCCTGCGTAAA 57.880 42.857 0.00 0.00 0.00 2.01 F
4874 5091 1.067516 CCAGTTCTTTGCCAACCACTG 59.932 52.381 3.79 3.79 32.96 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1359 1535 0.322906 TGAAGCTGAGCTCCTCGAGA 60.323 55.000 15.71 0.0 38.25 4.04 R
1990 2169 0.541863 ATCCCACAGATCCGTTCACC 59.458 55.000 0.00 0.0 0.00 4.02 R
3211 3402 1.331214 CCACTTCCAAACCACAGCAT 58.669 50.000 0.00 0.0 0.00 3.79 R
3214 3405 1.408702 CCAACCACTTCCAAACCACAG 59.591 52.381 0.00 0.0 0.00 3.66 R
3582 3776 1.968017 GCTAGCCACAGCAGCAACA 60.968 57.895 2.29 0.0 43.56 3.33 R
5143 5360 0.679002 CTGACTCCAACATGGGGCAG 60.679 60.000 0.00 1.6 43.56 4.85 R
6543 6855 1.361197 TGACATACTCCCTCTGTCCCA 59.639 52.381 0.00 0.0 38.79 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 7.123355 ACAATCAAACAATATTATGGGGTGG 57.877 36.000 0.00 0.00 0.00 4.61
44 45 5.806654 ATCAAACAATATTATGGGGTGGC 57.193 39.130 0.00 0.00 0.00 5.01
45 46 3.634448 TCAAACAATATTATGGGGTGGCG 59.366 43.478 0.00 0.00 0.00 5.69
46 47 2.286365 ACAATATTATGGGGTGGCGG 57.714 50.000 0.00 0.00 0.00 6.13
47 48 1.203001 ACAATATTATGGGGTGGCGGG 60.203 52.381 0.00 0.00 0.00 6.13
48 49 0.251608 AATATTATGGGGTGGCGGGC 60.252 55.000 0.00 0.00 0.00 6.13
49 50 2.150014 ATATTATGGGGTGGCGGGCC 62.150 60.000 1.86 1.86 0.00 5.80
59 60 4.434354 GGCGGGCCAATGGGTGTA 62.434 66.667 4.39 0.00 36.17 2.90
60 61 2.123897 GCGGGCCAATGGGTGTAT 60.124 61.111 4.39 0.00 36.17 2.29
61 62 2.489275 GCGGGCCAATGGGTGTATG 61.489 63.158 4.39 0.00 36.17 2.39
62 63 2.489275 CGGGCCAATGGGTGTATGC 61.489 63.158 4.39 0.00 36.17 3.14
63 64 1.381056 GGGCCAATGGGTGTATGCA 60.381 57.895 4.39 0.00 36.17 3.96
64 65 1.394266 GGGCCAATGGGTGTATGCAG 61.394 60.000 4.39 0.00 36.17 4.41
65 66 1.394266 GGCCAATGGGTGTATGCAGG 61.394 60.000 0.00 0.00 36.17 4.85
66 67 1.394266 GCCAATGGGTGTATGCAGGG 61.394 60.000 0.00 0.00 36.17 4.45
67 68 0.756442 CCAATGGGTGTATGCAGGGG 60.756 60.000 0.00 0.00 0.00 4.79
68 69 1.076044 AATGGGTGTATGCAGGGGC 60.076 57.895 0.00 0.00 41.68 5.80
80 81 2.252976 GCAGGGGCATTGTTGAAAAA 57.747 45.000 0.00 0.00 40.72 1.94
81 82 2.145536 GCAGGGGCATTGTTGAAAAAG 58.854 47.619 0.00 0.00 40.72 2.27
82 83 2.485302 GCAGGGGCATTGTTGAAAAAGT 60.485 45.455 0.00 0.00 40.72 2.66
83 84 3.392882 CAGGGGCATTGTTGAAAAAGTC 58.607 45.455 0.00 0.00 0.00 3.01
84 85 3.070015 CAGGGGCATTGTTGAAAAAGTCT 59.930 43.478 0.00 0.00 0.00 3.24
85 86 3.321968 AGGGGCATTGTTGAAAAAGTCTC 59.678 43.478 0.00 0.00 0.00 3.36
86 87 3.069443 GGGGCATTGTTGAAAAAGTCTCA 59.931 43.478 0.00 0.00 0.00 3.27
87 88 4.442753 GGGGCATTGTTGAAAAAGTCTCAA 60.443 41.667 0.00 0.00 0.00 3.02
88 89 5.115480 GGGCATTGTTGAAAAAGTCTCAAA 58.885 37.500 0.00 0.00 34.68 2.69
89 90 5.584251 GGGCATTGTTGAAAAAGTCTCAAAA 59.416 36.000 0.00 0.00 34.68 2.44
90 91 6.093357 GGGCATTGTTGAAAAAGTCTCAAAAA 59.907 34.615 0.00 0.00 35.12 1.94
91 92 7.182089 GGCATTGTTGAAAAAGTCTCAAAAAG 58.818 34.615 0.00 0.00 34.34 2.27
92 93 7.148423 GGCATTGTTGAAAAAGTCTCAAAAAGT 60.148 33.333 0.00 0.00 34.34 2.66
93 94 7.899841 GCATTGTTGAAAAAGTCTCAAAAAGTC 59.100 33.333 0.00 0.00 34.34 3.01
94 95 7.883229 TTGTTGAAAAAGTCTCAAAAAGTCC 57.117 32.000 0.00 0.00 34.68 3.85
95 96 6.394809 TGTTGAAAAAGTCTCAAAAAGTCCC 58.605 36.000 0.00 0.00 34.68 4.46
96 97 5.592104 TGAAAAAGTCTCAAAAAGTCCCC 57.408 39.130 0.00 0.00 0.00 4.81
97 98 5.020132 TGAAAAAGTCTCAAAAAGTCCCCA 58.980 37.500 0.00 0.00 0.00 4.96
98 99 5.482175 TGAAAAAGTCTCAAAAAGTCCCCAA 59.518 36.000 0.00 0.00 0.00 4.12
99 100 6.014156 TGAAAAAGTCTCAAAAAGTCCCCAAA 60.014 34.615 0.00 0.00 0.00 3.28
100 101 6.367374 AAAAGTCTCAAAAAGTCCCCAAAA 57.633 33.333 0.00 0.00 0.00 2.44
101 102 5.598416 AAGTCTCAAAAAGTCCCCAAAAG 57.402 39.130 0.00 0.00 0.00 2.27
102 103 4.867086 AGTCTCAAAAAGTCCCCAAAAGA 58.133 39.130 0.00 0.00 0.00 2.52
103 104 4.645136 AGTCTCAAAAAGTCCCCAAAAGAC 59.355 41.667 0.00 0.00 34.31 3.01
104 105 4.645136 GTCTCAAAAAGTCCCCAAAAGACT 59.355 41.667 0.00 0.00 46.50 3.24
105 106 4.887655 TCTCAAAAAGTCCCCAAAAGACTC 59.112 41.667 0.00 0.00 43.77 3.36
106 107 4.867086 TCAAAAAGTCCCCAAAAGACTCT 58.133 39.130 0.00 0.00 43.77 3.24
107 108 4.887655 TCAAAAAGTCCCCAAAAGACTCTC 59.112 41.667 0.00 0.00 43.77 3.20
108 109 3.510531 AAAGTCCCCAAAAGACTCTCC 57.489 47.619 0.00 0.00 43.77 3.71
109 110 2.424684 AGTCCCCAAAAGACTCTCCT 57.575 50.000 0.00 0.00 40.61 3.69
110 111 2.707554 AGTCCCCAAAAGACTCTCCTT 58.292 47.619 0.00 0.00 40.61 3.36
111 112 3.870559 AGTCCCCAAAAGACTCTCCTTA 58.129 45.455 0.00 0.00 40.61 2.69
112 113 4.240323 AGTCCCCAAAAGACTCTCCTTAA 58.760 43.478 0.00 0.00 40.61 1.85
113 114 4.287326 AGTCCCCAAAAGACTCTCCTTAAG 59.713 45.833 0.00 0.00 40.61 1.85
114 115 4.286291 GTCCCCAAAAGACTCTCCTTAAGA 59.714 45.833 3.36 0.00 0.00 2.10
126 127 6.790232 CTCTCCTTAAGAGTCTTCTCCATT 57.210 41.667 9.12 0.00 45.61 3.16
127 128 7.181569 CTCTCCTTAAGAGTCTTCTCCATTT 57.818 40.000 9.12 0.00 45.61 2.32
128 129 8.299990 CTCTCCTTAAGAGTCTTCTCCATTTA 57.700 38.462 9.12 0.00 45.61 1.40
129 130 8.299990 TCTCCTTAAGAGTCTTCTCCATTTAG 57.700 38.462 9.12 0.00 43.71 1.85
130 131 7.896496 TCTCCTTAAGAGTCTTCTCCATTTAGT 59.104 37.037 9.12 0.00 43.71 2.24
131 132 8.068892 TCCTTAAGAGTCTTCTCCATTTAGTC 57.931 38.462 9.12 0.00 41.26 2.59
132 133 7.124448 TCCTTAAGAGTCTTCTCCATTTAGTCC 59.876 40.741 9.12 0.00 41.26 3.85
133 134 5.685520 AAGAGTCTTCTCCATTTAGTCCC 57.314 43.478 0.00 0.00 41.26 4.46
134 135 4.689062 AGAGTCTTCTCCATTTAGTCCCA 58.311 43.478 0.00 0.00 41.26 4.37
135 136 5.094387 AGAGTCTTCTCCATTTAGTCCCAA 58.906 41.667 0.00 0.00 41.26 4.12
136 137 5.548056 AGAGTCTTCTCCATTTAGTCCCAAA 59.452 40.000 0.00 0.00 41.26 3.28
137 138 6.044404 AGAGTCTTCTCCATTTAGTCCCAAAA 59.956 38.462 0.00 0.00 41.26 2.44
138 139 6.610830 AGTCTTCTCCATTTAGTCCCAAAAA 58.389 36.000 0.00 0.00 0.00 1.94
139 140 6.717084 AGTCTTCTCCATTTAGTCCCAAAAAG 59.283 38.462 0.00 0.00 0.00 2.27
140 141 5.476945 TCTTCTCCATTTAGTCCCAAAAAGC 59.523 40.000 0.00 0.00 0.00 3.51
141 142 4.735369 TCTCCATTTAGTCCCAAAAAGCA 58.265 39.130 0.00 0.00 0.00 3.91
142 143 5.144100 TCTCCATTTAGTCCCAAAAAGCAA 58.856 37.500 0.00 0.00 0.00 3.91
143 144 5.010617 TCTCCATTTAGTCCCAAAAAGCAAC 59.989 40.000 0.00 0.00 0.00 4.17
144 145 4.898861 TCCATTTAGTCCCAAAAAGCAACT 59.101 37.500 0.00 0.00 0.00 3.16
145 146 5.365314 TCCATTTAGTCCCAAAAAGCAACTT 59.635 36.000 0.00 0.00 0.00 2.66
146 147 6.054941 CCATTTAGTCCCAAAAAGCAACTTT 58.945 36.000 0.00 0.00 34.94 2.66
147 148 6.542005 CCATTTAGTCCCAAAAAGCAACTTTT 59.458 34.615 0.00 0.00 44.27 2.27
148 149 7.713073 CCATTTAGTCCCAAAAAGCAACTTTTA 59.287 33.333 5.79 0.00 41.98 1.52
149 150 8.764287 CATTTAGTCCCAAAAAGCAACTTTTAG 58.236 33.333 5.79 1.81 41.98 1.85
150 151 5.932619 AGTCCCAAAAAGCAACTTTTAGT 57.067 34.783 5.79 0.00 41.98 2.24
151 152 5.902681 AGTCCCAAAAAGCAACTTTTAGTC 58.097 37.500 5.79 0.00 41.98 2.59
152 153 5.047847 GTCCCAAAAAGCAACTTTTAGTCC 58.952 41.667 5.79 0.00 41.98 3.85
153 154 4.100344 TCCCAAAAAGCAACTTTTAGTCCC 59.900 41.667 5.79 0.00 41.98 4.46
154 155 4.100963 CCCAAAAAGCAACTTTTAGTCCCT 59.899 41.667 5.79 0.00 41.98 4.20
155 156 5.303333 CCCAAAAAGCAACTTTTAGTCCCTA 59.697 40.000 5.79 0.00 41.98 3.53
156 157 6.447162 CCAAAAAGCAACTTTTAGTCCCTAG 58.553 40.000 5.79 0.00 41.98 3.02
157 158 6.040504 CCAAAAAGCAACTTTTAGTCCCTAGT 59.959 38.462 5.79 0.00 41.98 2.57
158 159 7.229907 CCAAAAAGCAACTTTTAGTCCCTAGTA 59.770 37.037 5.79 0.00 41.98 1.82
159 160 7.981102 AAAAGCAACTTTTAGTCCCTAGTAG 57.019 36.000 3.57 0.00 41.17 2.57
160 161 6.683312 AAGCAACTTTTAGTCCCTAGTAGT 57.317 37.500 0.00 0.00 0.00 2.73
161 162 6.283544 AGCAACTTTTAGTCCCTAGTAGTC 57.716 41.667 0.00 0.00 0.00 2.59
162 163 5.187381 AGCAACTTTTAGTCCCTAGTAGTCC 59.813 44.000 0.00 0.00 0.00 3.85
163 164 5.626347 GCAACTTTTAGTCCCTAGTAGTCCC 60.626 48.000 0.00 0.00 0.00 4.46
164 165 5.549229 ACTTTTAGTCCCTAGTAGTCCCT 57.451 43.478 0.00 0.00 0.00 4.20
165 166 5.517924 ACTTTTAGTCCCTAGTAGTCCCTC 58.482 45.833 0.00 0.00 0.00 4.30
166 167 4.533001 TTTAGTCCCTAGTAGTCCCTCC 57.467 50.000 0.00 0.00 0.00 4.30
167 168 1.233857 AGTCCCTAGTAGTCCCTCCC 58.766 60.000 0.00 0.00 0.00 4.30
168 169 0.178995 GTCCCTAGTAGTCCCTCCCG 60.179 65.000 0.00 0.00 0.00 5.14
169 170 0.625683 TCCCTAGTAGTCCCTCCCGT 60.626 60.000 0.00 0.00 0.00 5.28
170 171 0.261109 CCCTAGTAGTCCCTCCCGTT 59.739 60.000 0.00 0.00 0.00 4.44
171 172 1.342774 CCCTAGTAGTCCCTCCCGTTT 60.343 57.143 0.00 0.00 0.00 3.60
172 173 1.755380 CCTAGTAGTCCCTCCCGTTTG 59.245 57.143 0.00 0.00 0.00 2.93
173 174 2.622452 CCTAGTAGTCCCTCCCGTTTGA 60.622 54.545 0.00 0.00 0.00 2.69
174 175 2.249309 AGTAGTCCCTCCCGTTTGAT 57.751 50.000 0.00 0.00 0.00 2.57
175 176 2.547990 AGTAGTCCCTCCCGTTTGATT 58.452 47.619 0.00 0.00 0.00 2.57
176 177 3.716431 AGTAGTCCCTCCCGTTTGATTA 58.284 45.455 0.00 0.00 0.00 1.75
177 178 4.098894 AGTAGTCCCTCCCGTTTGATTAA 58.901 43.478 0.00 0.00 0.00 1.40
178 179 4.533311 AGTAGTCCCTCCCGTTTGATTAAA 59.467 41.667 0.00 0.00 0.00 1.52
179 180 4.376225 AGTCCCTCCCGTTTGATTAAAA 57.624 40.909 0.00 0.00 0.00 1.52
180 181 4.732065 AGTCCCTCCCGTTTGATTAAAAA 58.268 39.130 0.00 0.00 0.00 1.94
181 182 4.765339 AGTCCCTCCCGTTTGATTAAAAAG 59.235 41.667 0.00 0.00 0.00 2.27
182 183 4.521639 GTCCCTCCCGTTTGATTAAAAAGT 59.478 41.667 0.00 0.00 0.00 2.66
183 184 4.763279 TCCCTCCCGTTTGATTAAAAAGTC 59.237 41.667 0.00 0.00 0.00 3.01
184 185 4.765339 CCCTCCCGTTTGATTAAAAAGTCT 59.235 41.667 0.00 0.00 0.00 3.24
185 186 5.941647 CCCTCCCGTTTGATTAAAAAGTCTA 59.058 40.000 0.00 0.00 0.00 2.59
186 187 6.431852 CCCTCCCGTTTGATTAAAAAGTCTAA 59.568 38.462 0.00 0.00 0.00 2.10
187 188 7.361799 CCCTCCCGTTTGATTAAAAAGTCTAAG 60.362 40.741 0.00 0.00 0.00 2.18
188 189 7.389607 CCTCCCGTTTGATTAAAAAGTCTAAGA 59.610 37.037 0.00 0.00 0.00 2.10
189 190 8.319143 TCCCGTTTGATTAAAAAGTCTAAGAG 57.681 34.615 0.00 0.00 0.00 2.85
190 191 7.389607 TCCCGTTTGATTAAAAAGTCTAAGAGG 59.610 37.037 0.00 0.00 0.00 3.69
191 192 7.361799 CCCGTTTGATTAAAAAGTCTAAGAGGG 60.362 40.741 0.00 0.00 0.00 4.30
192 193 7.389607 CCGTTTGATTAAAAAGTCTAAGAGGGA 59.610 37.037 0.00 0.00 0.00 4.20
193 194 8.228464 CGTTTGATTAAAAAGTCTAAGAGGGAC 58.772 37.037 0.00 0.00 0.00 4.46
194 195 9.286170 GTTTGATTAAAAAGTCTAAGAGGGACT 57.714 33.333 0.00 0.00 44.73 3.85
219 220 6.947644 TTTTAGTCCCTACACCAAAAAGTC 57.052 37.500 0.00 0.00 0.00 3.01
220 221 5.633655 TTAGTCCCTACACCAAAAAGTCA 57.366 39.130 0.00 0.00 0.00 3.41
221 222 4.724279 AGTCCCTACACCAAAAAGTCAT 57.276 40.909 0.00 0.00 0.00 3.06
222 223 5.061721 AGTCCCTACACCAAAAAGTCATT 57.938 39.130 0.00 0.00 0.00 2.57
223 224 4.827284 AGTCCCTACACCAAAAAGTCATTG 59.173 41.667 0.00 0.00 0.00 2.82
240 241 3.215671 TGGAAACAAACACCCCCTG 57.784 52.632 0.00 0.00 37.44 4.45
241 242 0.336737 TGGAAACAAACACCCCCTGT 59.663 50.000 0.00 0.00 37.44 4.00
242 243 1.273324 TGGAAACAAACACCCCCTGTT 60.273 47.619 0.00 0.00 45.68 3.16
243 244 1.411246 GGAAACAAACACCCCCTGTTC 59.589 52.381 0.00 0.00 42.70 3.18
244 245 2.104170 GAAACAAACACCCCCTGTTCA 58.896 47.619 0.00 0.00 42.70 3.18
245 246 2.470057 AACAAACACCCCCTGTTCAT 57.530 45.000 0.00 0.00 42.70 2.57
246 247 2.470057 ACAAACACCCCCTGTTCATT 57.530 45.000 0.00 0.00 42.70 2.57
247 248 2.758130 ACAAACACCCCCTGTTCATTT 58.242 42.857 0.00 0.00 42.70 2.32
248 249 3.917300 ACAAACACCCCCTGTTCATTTA 58.083 40.909 0.00 0.00 42.70 1.40
249 250 3.895041 ACAAACACCCCCTGTTCATTTAG 59.105 43.478 0.00 0.00 42.70 1.85
250 251 3.895041 CAAACACCCCCTGTTCATTTAGT 59.105 43.478 0.00 0.00 42.70 2.24
251 252 3.434940 ACACCCCCTGTTCATTTAGTC 57.565 47.619 0.00 0.00 0.00 2.59
252 253 2.041216 ACACCCCCTGTTCATTTAGTCC 59.959 50.000 0.00 0.00 0.00 3.85
253 254 1.639108 ACCCCCTGTTCATTTAGTCCC 59.361 52.381 0.00 0.00 0.00 4.46
254 255 1.063942 CCCCCTGTTCATTTAGTCCCC 60.064 57.143 0.00 0.00 0.00 4.81
255 256 1.638589 CCCCTGTTCATTTAGTCCCCA 59.361 52.381 0.00 0.00 0.00 4.96
256 257 2.042433 CCCCTGTTCATTTAGTCCCCAA 59.958 50.000 0.00 0.00 0.00 4.12
257 258 3.501385 CCCCTGTTCATTTAGTCCCCAAA 60.501 47.826 0.00 0.00 0.00 3.28
258 259 4.156477 CCCTGTTCATTTAGTCCCCAAAA 58.844 43.478 0.00 0.00 0.00 2.44
259 260 4.220602 CCCTGTTCATTTAGTCCCCAAAAG 59.779 45.833 0.00 0.00 0.00 2.27
260 261 4.321974 CCTGTTCATTTAGTCCCCAAAAGC 60.322 45.833 0.00 0.00 0.00 3.51
261 262 4.219115 TGTTCATTTAGTCCCCAAAAGCA 58.781 39.130 0.00 0.00 0.00 3.91
262 263 4.651503 TGTTCATTTAGTCCCCAAAAGCAA 59.348 37.500 0.00 0.00 0.00 3.91
263 264 4.864704 TCATTTAGTCCCCAAAAGCAAC 57.135 40.909 0.00 0.00 0.00 4.17
264 265 4.479158 TCATTTAGTCCCCAAAAGCAACT 58.521 39.130 0.00 0.00 0.00 3.16
265 266 4.898861 TCATTTAGTCCCCAAAAGCAACTT 59.101 37.500 0.00 0.00 0.00 2.66
266 267 5.365314 TCATTTAGTCCCCAAAAGCAACTTT 59.635 36.000 0.00 0.00 34.94 2.66
267 268 5.685520 TTTAGTCCCCAAAAGCAACTTTT 57.314 34.783 0.00 0.00 43.36 2.27
268 269 6.793505 TTTAGTCCCCAAAAGCAACTTTTA 57.206 33.333 5.08 0.00 41.05 1.52
269 270 4.937201 AGTCCCCAAAAGCAACTTTTAG 57.063 40.909 5.08 0.00 41.05 1.85
270 271 4.286707 AGTCCCCAAAAGCAACTTTTAGT 58.713 39.130 5.08 0.00 41.05 2.24
271 272 4.341235 AGTCCCCAAAAGCAACTTTTAGTC 59.659 41.667 5.08 0.00 41.05 2.59
272 273 3.639561 TCCCCAAAAGCAACTTTTAGTCC 59.360 43.478 5.08 0.00 41.05 3.85
273 274 3.244078 CCCCAAAAGCAACTTTTAGTCCC 60.244 47.826 5.08 0.00 41.05 4.46
274 275 3.641436 CCCAAAAGCAACTTTTAGTCCCT 59.359 43.478 5.08 0.00 41.05 4.20
275 276 4.830600 CCCAAAAGCAACTTTTAGTCCCTA 59.169 41.667 5.08 0.00 41.05 3.53
276 277 5.048013 CCCAAAAGCAACTTTTAGTCCCTAG 60.048 44.000 5.08 0.00 41.05 3.02
277 278 5.535030 CCAAAAGCAACTTTTAGTCCCTAGT 59.465 40.000 5.08 0.00 41.05 2.57
278 279 6.713450 CCAAAAGCAACTTTTAGTCCCTAGTA 59.287 38.462 5.08 0.00 41.05 1.82
279 280 7.094762 CCAAAAGCAACTTTTAGTCCCTAGTAG 60.095 40.741 5.08 0.00 41.05 2.57
280 281 6.683312 AAGCAACTTTTAGTCCCTAGTAGT 57.317 37.500 0.00 0.00 0.00 2.73
281 282 6.283544 AGCAACTTTTAGTCCCTAGTAGTC 57.716 41.667 0.00 0.00 0.00 2.59
282 283 6.017830 AGCAACTTTTAGTCCCTAGTAGTCT 58.982 40.000 0.00 0.00 0.00 3.24
283 284 6.153170 AGCAACTTTTAGTCCCTAGTAGTCTC 59.847 42.308 0.00 0.00 0.00 3.36
284 285 6.153170 GCAACTTTTAGTCCCTAGTAGTCTCT 59.847 42.308 0.00 0.00 0.00 3.10
285 286 7.309928 GCAACTTTTAGTCCCTAGTAGTCTCTT 60.310 40.741 0.00 0.00 0.00 2.85
286 287 7.943079 ACTTTTAGTCCCTAGTAGTCTCTTC 57.057 40.000 0.00 0.00 0.00 2.87
287 288 6.891361 ACTTTTAGTCCCTAGTAGTCTCTTCC 59.109 42.308 0.00 0.00 0.00 3.46
288 289 3.564053 AGTCCCTAGTAGTCTCTTCCG 57.436 52.381 0.00 0.00 0.00 4.30
289 290 2.845586 AGTCCCTAGTAGTCTCTTCCGT 59.154 50.000 0.00 0.00 0.00 4.69
290 291 3.266513 AGTCCCTAGTAGTCTCTTCCGTT 59.733 47.826 0.00 0.00 0.00 4.44
291 292 4.015764 GTCCCTAGTAGTCTCTTCCGTTT 58.984 47.826 0.00 0.00 0.00 3.60
292 293 5.045286 AGTCCCTAGTAGTCTCTTCCGTTTA 60.045 44.000 0.00 0.00 0.00 2.01
293 294 5.649831 GTCCCTAGTAGTCTCTTCCGTTTAA 59.350 44.000 0.00 0.00 0.00 1.52
294 295 6.320926 GTCCCTAGTAGTCTCTTCCGTTTAAT 59.679 42.308 0.00 0.00 0.00 1.40
295 296 6.894103 TCCCTAGTAGTCTCTTCCGTTTAATT 59.106 38.462 0.00 0.00 0.00 1.40
296 297 8.055181 TCCCTAGTAGTCTCTTCCGTTTAATTA 58.945 37.037 0.00 0.00 0.00 1.40
297 298 8.689972 CCCTAGTAGTCTCTTCCGTTTAATTAA 58.310 37.037 0.00 0.00 0.00 1.40
342 343 6.947644 TTTAGTTCCTACACCAAAAAGTCC 57.052 37.500 0.00 0.00 0.00 3.85
343 344 4.790718 AGTTCCTACACCAAAAAGTCCT 57.209 40.909 0.00 0.00 0.00 3.85
344 345 5.125367 AGTTCCTACACCAAAAAGTCCTT 57.875 39.130 0.00 0.00 0.00 3.36
345 346 4.887655 AGTTCCTACACCAAAAAGTCCTTG 59.112 41.667 0.00 0.00 0.00 3.61
347 348 3.460340 TCCTACACCAAAAAGTCCTTGGA 59.540 43.478 8.54 0.00 45.31 3.53
348 349 4.079672 TCCTACACCAAAAAGTCCTTGGAA 60.080 41.667 8.54 0.00 45.31 3.53
349 350 4.647399 CCTACACCAAAAAGTCCTTGGAAA 59.353 41.667 8.54 0.00 45.31 3.13
350 351 4.465632 ACACCAAAAAGTCCTTGGAAAC 57.534 40.909 8.54 0.00 45.31 2.78
351 352 3.835395 ACACCAAAAAGTCCTTGGAAACA 59.165 39.130 8.54 0.00 45.31 2.83
365 366 3.709587 TGGAAACAAACACCCCTAAACA 58.290 40.909 0.00 0.00 37.44 2.83
366 367 3.702045 TGGAAACAAACACCCCTAAACAG 59.298 43.478 0.00 0.00 37.44 3.16
367 368 3.491964 GGAAACAAACACCCCTAAACAGC 60.492 47.826 0.00 0.00 0.00 4.40
368 369 1.699730 ACAAACACCCCTAAACAGCC 58.300 50.000 0.00 0.00 0.00 4.85
369 370 0.966179 CAAACACCCCTAAACAGCCC 59.034 55.000 0.00 0.00 0.00 5.19
370 371 0.178944 AAACACCCCTAAACAGCCCC 60.179 55.000 0.00 0.00 0.00 5.80
371 372 2.045340 CACCCCTAAACAGCCCCG 60.045 66.667 0.00 0.00 0.00 5.73
372 373 2.530916 ACCCCTAAACAGCCCCGT 60.531 61.111 0.00 0.00 0.00 5.28
373 374 2.158130 ACCCCTAAACAGCCCCGTT 61.158 57.895 0.00 0.00 0.00 4.44
374 375 1.378119 CCCCTAAACAGCCCCGTTC 60.378 63.158 0.00 0.00 0.00 3.95
375 376 1.377229 CCCTAAACAGCCCCGTTCA 59.623 57.895 0.00 0.00 0.00 3.18
376 377 0.034477 CCCTAAACAGCCCCGTTCAT 60.034 55.000 0.00 0.00 0.00 2.57
377 378 1.615919 CCCTAAACAGCCCCGTTCATT 60.616 52.381 0.00 0.00 0.00 2.57
378 379 2.167662 CCTAAACAGCCCCGTTCATTT 58.832 47.619 0.00 0.00 0.00 2.32
379 380 2.163613 CCTAAACAGCCCCGTTCATTTC 59.836 50.000 0.00 0.00 0.00 2.17
380 381 1.698506 AAACAGCCCCGTTCATTTCA 58.301 45.000 0.00 0.00 0.00 2.69
381 382 1.698506 AACAGCCCCGTTCATTTCAA 58.301 45.000 0.00 0.00 0.00 2.69
382 383 1.698506 ACAGCCCCGTTCATTTCAAA 58.301 45.000 0.00 0.00 0.00 2.69
383 384 1.613437 ACAGCCCCGTTCATTTCAAAG 59.387 47.619 0.00 0.00 0.00 2.77
384 385 1.067635 CAGCCCCGTTCATTTCAAAGG 60.068 52.381 0.00 0.00 0.00 3.11
385 386 1.203001 AGCCCCGTTCATTTCAAAGGA 60.203 47.619 0.00 0.00 0.00 3.36
386 387 1.616374 GCCCCGTTCATTTCAAAGGAA 59.384 47.619 0.00 0.00 0.00 3.36
387 388 2.609491 GCCCCGTTCATTTCAAAGGAAC 60.609 50.000 16.10 16.10 38.00 3.62
388 389 2.625790 CCCCGTTCATTTCAAAGGAACA 59.374 45.455 23.47 0.00 40.62 3.18
389 390 3.068873 CCCCGTTCATTTCAAAGGAACAA 59.931 43.478 23.47 0.00 40.62 2.83
390 391 4.048504 CCCGTTCATTTCAAAGGAACAAC 58.951 43.478 23.47 2.26 40.62 3.32
391 392 4.440802 CCCGTTCATTTCAAAGGAACAACA 60.441 41.667 23.47 0.00 40.62 3.33
392 393 4.739716 CCGTTCATTTCAAAGGAACAACAG 59.260 41.667 23.47 9.96 40.62 3.16
393 394 4.207019 CGTTCATTTCAAAGGAACAACAGC 59.793 41.667 23.47 0.42 40.62 4.40
394 395 4.320608 TCATTTCAAAGGAACAACAGCC 57.679 40.909 0.00 0.00 31.35 4.85
395 396 3.069443 TCATTTCAAAGGAACAACAGCCC 59.931 43.478 0.00 0.00 31.35 5.19
396 397 1.408969 TTCAAAGGAACAACAGCCCC 58.591 50.000 0.00 0.00 0.00 5.80
397 398 0.821711 TCAAAGGAACAACAGCCCCG 60.822 55.000 0.00 0.00 0.00 5.73
398 399 1.106944 CAAAGGAACAACAGCCCCGT 61.107 55.000 0.00 0.00 0.00 5.28
399 400 0.396556 AAAGGAACAACAGCCCCGTT 60.397 50.000 0.00 0.00 0.00 4.44
400 401 0.822121 AAGGAACAACAGCCCCGTTC 60.822 55.000 0.00 0.00 38.62 3.95
401 402 1.527380 GGAACAACAGCCCCGTTCA 60.527 57.895 0.00 0.00 40.62 3.18
402 403 0.893727 GGAACAACAGCCCCGTTCAT 60.894 55.000 0.00 0.00 40.62 2.57
420 421 2.882137 TCATTTCAAAGGAACACCGTCC 59.118 45.455 0.00 0.00 38.03 4.79
423 424 2.281276 AAAGGAACACCGTCCGCC 60.281 61.111 0.00 0.00 43.03 6.13
424 425 3.109592 AAAGGAACACCGTCCGCCA 62.110 57.895 0.00 0.00 43.03 5.69
434 435 2.604174 CGTCCGCCACAAACCACTC 61.604 63.158 0.00 0.00 0.00 3.51
468 471 1.378119 GTCCACGTCCCAAATCCCC 60.378 63.158 0.00 0.00 0.00 4.81
497 500 3.343972 GCTGAAACAAGCGCCTCA 58.656 55.556 2.29 0.00 32.56 3.86
534 537 3.588842 TCCATCACTGTTCATTCCCTCTT 59.411 43.478 0.00 0.00 0.00 2.85
550 553 2.575111 CTTCATGCTCGCTCGCTCG 61.575 63.158 0.00 0.00 0.00 5.03
567 570 2.124942 GCCCCTAGCTCAGCACAC 60.125 66.667 0.00 0.00 38.99 3.82
626 629 9.736023 AACAAATAAATCTGAAACAGTGAGAAC 57.264 29.630 0.00 0.00 32.61 3.01
700 734 3.757745 AACAAAAGGACAACGACAGTG 57.242 42.857 0.00 0.00 0.00 3.66
815 856 2.110899 AGAAAGAGAGGTGAGGGTGAGA 59.889 50.000 0.00 0.00 0.00 3.27
1429 1605 0.320050 GATGATCGCCTCCTCCTTCC 59.680 60.000 0.00 0.00 0.00 3.46
1561 1737 1.954927 CTAAGACGGGAGATTTGGGC 58.045 55.000 0.00 0.00 0.00 5.36
1595 1771 2.422832 CCTTCTCTTGCAGATTTGAGCC 59.577 50.000 0.00 0.00 0.00 4.70
1730 1908 3.128589 ACAACTGATTTTCTTGTGTGCGT 59.871 39.130 0.00 0.00 0.00 5.24
1731 1909 4.334203 ACAACTGATTTTCTTGTGTGCGTA 59.666 37.500 0.00 0.00 0.00 4.42
1784 1962 9.548208 GCAAGTTTCAGTTAAGATTTGATCTAC 57.452 33.333 0.00 0.00 39.08 2.59
1819 1997 7.545362 AGTGTGAAAGGATTTGATCTATTCG 57.455 36.000 0.00 0.00 39.27 3.34
1826 2004 6.107901 AGGATTTGATCTATTCGAAGGAGG 57.892 41.667 3.35 0.00 31.11 4.30
1985 2164 2.710220 TTGCATTGTGTGAGCATGAC 57.290 45.000 0.00 0.00 38.19 3.06
1990 2169 2.174363 TTGTGTGAGCATGACCTCTG 57.826 50.000 0.00 0.00 33.02 3.35
2158 2337 4.489771 CCCCCACGTCATGAGCCC 62.490 72.222 0.00 0.00 0.00 5.19
2194 2373 4.133820 TCGCTTGAATTGTTCTCCTTTCA 58.866 39.130 0.00 0.00 0.00 2.69
2296 2475 8.613060 TTTAGCATGTTCTGAAGATATGGATC 57.387 34.615 0.00 0.00 0.00 3.36
2317 2496 1.623311 CCCATTTCTGTGGTTTTCCCC 59.377 52.381 0.00 0.00 37.57 4.81
2388 2567 6.264744 GCTCATAATGCCTGCATATAATGGAT 59.735 38.462 4.84 0.00 35.31 3.41
2425 2605 6.377146 GCAACTTTGATCCCTTCCTTTGTATA 59.623 38.462 0.00 0.00 0.00 1.47
2426 2606 7.415653 GCAACTTTGATCCCTTCCTTTGTATAG 60.416 40.741 0.00 0.00 0.00 1.31
2427 2607 7.272144 ACTTTGATCCCTTCCTTTGTATAGT 57.728 36.000 0.00 0.00 0.00 2.12
2485 2665 9.765795 ACAGAAAGTAGGAATTTATAAGATCCG 57.234 33.333 11.05 1.21 37.05 4.18
2520 2700 4.324267 AGGAACTTGAAGGATTTGGTACG 58.676 43.478 0.00 0.00 27.25 3.67
2560 2744 8.267894 AGAAATCCATAGTACTTAATGTGCACT 58.732 33.333 19.41 0.28 33.54 4.40
2574 2758 4.145365 TGTGCACTACCAGTACTGTTTT 57.855 40.909 21.18 7.97 0.00 2.43
2578 2762 5.929992 GTGCACTACCAGTACTGTTTTGATA 59.070 40.000 21.18 0.76 0.00 2.15
2624 2808 2.573462 AGCTGTGAGGAAAGGCTAATGA 59.427 45.455 0.00 0.00 0.00 2.57
2636 2820 5.511234 AAGGCTAATGATGTTTGATCAGC 57.489 39.130 0.00 0.00 0.00 4.26
2646 2830 7.692460 TGATGTTTGATCAGCTTTTGATACT 57.308 32.000 0.00 0.00 46.51 2.12
2647 2831 8.791327 TGATGTTTGATCAGCTTTTGATACTA 57.209 30.769 0.00 0.00 46.51 1.82
2648 2832 9.399797 TGATGTTTGATCAGCTTTTGATACTAT 57.600 29.630 0.00 0.00 46.51 2.12
2683 2874 4.092675 GTGCAAACATAGAAGAGAGTCTGC 59.907 45.833 0.00 0.00 0.00 4.26
2824 3015 3.922910 TCGTCGAGAAAGAGAGTACAGA 58.077 45.455 0.00 0.00 0.00 3.41
2825 3016 4.505808 TCGTCGAGAAAGAGAGTACAGAT 58.494 43.478 0.00 0.00 0.00 2.90
2826 3017 5.658468 TCGTCGAGAAAGAGAGTACAGATA 58.342 41.667 0.00 0.00 0.00 1.98
2827 3018 5.519566 TCGTCGAGAAAGAGAGTACAGATAC 59.480 44.000 0.00 0.00 0.00 2.24
2828 3019 5.291371 CGTCGAGAAAGAGAGTACAGATACA 59.709 44.000 0.00 0.00 33.30 2.29
2829 3020 6.018588 CGTCGAGAAAGAGAGTACAGATACAT 60.019 42.308 0.00 0.00 33.30 2.29
2830 3021 7.466185 CGTCGAGAAAGAGAGTACAGATACATT 60.466 40.741 0.00 0.00 33.30 2.71
2831 3022 8.185505 GTCGAGAAAGAGAGTACAGATACATTT 58.814 37.037 0.00 0.00 33.30 2.32
2832 3023 8.740906 TCGAGAAAGAGAGTACAGATACATTTT 58.259 33.333 0.00 0.00 33.30 1.82
2833 3024 9.360093 CGAGAAAGAGAGTACAGATACATTTTT 57.640 33.333 0.00 0.00 33.30 1.94
2856 3047 4.925061 TTCTCGTCGAGAAAGAGAGTAC 57.075 45.455 30.39 0.00 44.37 2.73
2857 3048 3.922910 TCTCGTCGAGAAAGAGAGTACA 58.077 45.455 22.33 0.00 35.59 2.90
2858 3049 3.927758 TCTCGTCGAGAAAGAGAGTACAG 59.072 47.826 22.33 0.00 35.59 2.74
2859 3050 3.922910 TCGTCGAGAAAGAGAGTACAGA 58.077 45.455 0.00 0.00 0.00 3.41
2928 3119 3.830178 TGTTCTGTCGATTCTTGGACCTA 59.170 43.478 0.00 0.00 30.14 3.08
2974 3165 5.723672 TCTCACGTCTTTGTCCTAGAAAT 57.276 39.130 0.00 0.00 0.00 2.17
3044 3235 4.710865 TGGACATGACATGGTAATGCAATT 59.289 37.500 19.39 0.00 37.29 2.32
3053 3244 8.147058 TGACATGGTAATGCAATTTAGTTTGTT 58.853 29.630 0.00 0.00 37.87 2.83
3121 3312 8.523523 TGTGTGAATTCAACATTTGATGAATC 57.476 30.769 10.35 9.66 43.65 2.52
3229 3420 4.789012 AATATGCTGTGGTTTGGAAGTG 57.211 40.909 0.00 0.00 0.00 3.16
3383 3575 8.299570 CCTGATACTTACCATTATTTTGCATCC 58.700 37.037 0.00 0.00 0.00 3.51
3446 3638 6.472887 ACTTTAGGTGTGTGCTGTTATACAT 58.527 36.000 0.00 0.00 0.00 2.29
3458 3650 9.225436 TGTGCTGTTATACATTATTGAAGTTGA 57.775 29.630 0.00 0.00 0.00 3.18
3473 3665 3.120321 AGTTGATGTGTCCTGCGTAAA 57.880 42.857 0.00 0.00 0.00 2.01
3547 3741 9.453572 TTTTTCATTGCTCTGTCTATCTGTATT 57.546 29.630 0.00 0.00 0.00 1.89
3560 3754 6.371548 GTCTATCTGTATTGGTTTGCTTGTGA 59.628 38.462 0.00 0.00 0.00 3.58
3615 3809 6.649155 TGTGGCTAGCTTAAATCTGTTGATA 58.351 36.000 15.72 0.00 31.70 2.15
3912 4106 7.389053 ACTGGAGTAAGAACATGAACAAAGATC 59.611 37.037 0.00 0.00 0.00 2.75
3985 4188 5.052693 TGATCTTTGTAATGCCATAGCCT 57.947 39.130 0.00 0.00 38.69 4.58
3987 4190 6.782986 TGATCTTTGTAATGCCATAGCCTAT 58.217 36.000 0.00 0.00 38.69 2.57
4009 4220 8.395633 CCTATTGTACCTGCAGTTATTTGTTAC 58.604 37.037 13.81 2.92 0.00 2.50
4012 4223 7.429636 TGTACCTGCAGTTATTTGTTACTTC 57.570 36.000 13.81 0.00 0.00 3.01
4020 4231 8.946085 TGCAGTTATTTGTTACTTCCTCATAAG 58.054 33.333 0.00 0.00 0.00 1.73
4129 4340 8.199449 TCTTGTTCTGCTTTCATCATTCTTTTT 58.801 29.630 0.00 0.00 0.00 1.94
4151 4362 4.377839 AGATATGGTTCATCGCCTATCG 57.622 45.455 0.00 0.00 40.15 2.92
4723 4936 5.999205 ATTTATCAACTTCAATGCCCACA 57.001 34.783 0.00 0.00 0.00 4.17
4849 5066 4.892934 AGAAACAACTATGGTTTTCTGCCA 59.107 37.500 7.79 0.00 36.33 4.92
4874 5091 1.067516 CCAGTTCTTTGCCAACCACTG 59.932 52.381 3.79 3.79 32.96 3.66
5143 5360 2.608752 CCTTGTTGATGTTTCTGCCAGC 60.609 50.000 0.00 0.00 0.00 4.85
5305 5522 2.617532 GGAGTCTCTTGATGCTGGCTTT 60.618 50.000 0.00 0.00 0.00 3.51
5660 5877 4.653801 TGGAGATAATGAACGATCCTGGAA 59.346 41.667 0.00 0.00 0.00 3.53
6124 6341 3.152341 CCTGGAGCTGAGTTTTTGTCAT 58.848 45.455 0.00 0.00 0.00 3.06
6188 6488 7.905604 TCTGGATGCTAAATAATTATGGTCG 57.094 36.000 0.00 0.00 0.00 4.79
6209 6509 3.001330 CGTCTGGTGTTCTCTTTGTTCAC 59.999 47.826 0.00 0.00 0.00 3.18
6248 6548 1.003646 TGCCTGGCCTTGGGTTTATA 58.996 50.000 17.53 0.00 0.00 0.98
6251 6551 2.623239 GCCTGGCCTTGGGTTTATAGTT 60.623 50.000 7.66 0.00 0.00 2.24
6348 6660 9.853177 ATATGGATAGAAGGACTTAACTTTTGG 57.147 33.333 0.00 0.00 0.00 3.28
6381 6693 7.436376 GGCTAATCAAAAGATGCTAAATGAACC 59.564 37.037 0.00 0.00 0.00 3.62
6424 6736 2.941480 AGATGGCTGATCATTTGACCC 58.059 47.619 0.00 0.00 32.86 4.46
6443 6755 6.084060 TGACCCCATCTTCAGATATCACATA 58.916 40.000 5.32 0.00 32.63 2.29
6473 6785 5.072736 TCATTCATCTAGTACTCCCTCCGTA 59.927 44.000 0.00 0.00 0.00 4.02
6474 6786 5.378230 TTCATCTAGTACTCCCTCCGTAA 57.622 43.478 0.00 0.00 0.00 3.18
6475 6787 5.378230 TCATCTAGTACTCCCTCCGTAAA 57.622 43.478 0.00 0.00 0.00 2.01
6479 6791 5.819991 TCTAGTACTCCCTCCGTAAAGAAA 58.180 41.667 0.00 0.00 0.00 2.52
6485 6797 4.405036 ACTCCCTCCGTAAAGAAATACTCC 59.595 45.833 0.00 0.00 0.00 3.85
6486 6798 3.708121 TCCCTCCGTAAAGAAATACTCCC 59.292 47.826 0.00 0.00 0.00 4.30
6487 6799 3.710165 CCCTCCGTAAAGAAATACTCCCT 59.290 47.826 0.00 0.00 0.00 4.20
6489 6801 4.202233 CCTCCGTAAAGAAATACTCCCTCC 60.202 50.000 0.00 0.00 0.00 4.30
6491 6803 4.966805 TCCGTAAAGAAATACTCCCTCCAT 59.033 41.667 0.00 0.00 0.00 3.41
6492 6804 5.070047 TCCGTAAAGAAATACTCCCTCCATC 59.930 44.000 0.00 0.00 0.00 3.51
6493 6805 5.298347 CGTAAAGAAATACTCCCTCCATCC 58.702 45.833 0.00 0.00 0.00 3.51
6494 6806 5.070580 CGTAAAGAAATACTCCCTCCATCCT 59.929 44.000 0.00 0.00 0.00 3.24
6495 6807 5.379706 AAAGAAATACTCCCTCCATCCTG 57.620 43.478 0.00 0.00 0.00 3.86
6496 6808 4.286813 AGAAATACTCCCTCCATCCTGA 57.713 45.455 0.00 0.00 0.00 3.86
6501 6813 6.694445 AATACTCCCTCCATCCTGAAATAG 57.306 41.667 0.00 0.00 0.00 1.73
6543 6855 9.614792 ACTAACTTCAGTTGAGTCACTTATTTT 57.385 29.630 2.26 0.00 38.90 1.82
6544 6856 9.869844 CTAACTTCAGTTGAGTCACTTATTTTG 57.130 33.333 2.26 0.00 38.90 2.44
6545 6857 7.264373 ACTTCAGTTGAGTCACTTATTTTGG 57.736 36.000 0.00 0.00 0.00 3.28
6547 6859 5.935945 TCAGTTGAGTCACTTATTTTGGGA 58.064 37.500 0.00 0.00 0.00 4.37
6548 6860 5.763204 TCAGTTGAGTCACTTATTTTGGGAC 59.237 40.000 0.00 0.00 0.00 4.46
6550 6862 5.765182 AGTTGAGTCACTTATTTTGGGACAG 59.235 40.000 0.00 0.00 42.39 3.51
6551 6863 5.560722 TGAGTCACTTATTTTGGGACAGA 57.439 39.130 0.00 0.00 42.39 3.41
6552 6864 5.551233 TGAGTCACTTATTTTGGGACAGAG 58.449 41.667 0.00 0.00 42.39 3.35
6553 6865 4.911390 AGTCACTTATTTTGGGACAGAGG 58.089 43.478 0.00 0.00 42.39 3.69
6556 6868 4.019321 TCACTTATTTTGGGACAGAGGGAG 60.019 45.833 0.00 0.00 42.39 4.30
6557 6869 3.916989 ACTTATTTTGGGACAGAGGGAGT 59.083 43.478 0.00 0.00 42.39 3.85
6558 6870 5.045869 CACTTATTTTGGGACAGAGGGAGTA 60.046 44.000 0.00 0.00 42.39 2.59
6559 6871 5.731678 ACTTATTTTGGGACAGAGGGAGTAT 59.268 40.000 0.00 0.00 42.39 2.12
6560 6872 4.510167 ATTTTGGGACAGAGGGAGTATG 57.490 45.455 0.00 0.00 42.39 2.39
6561 6873 2.642171 TTGGGACAGAGGGAGTATGT 57.358 50.000 0.00 0.00 42.39 2.29
6562 6874 2.160721 TGGGACAGAGGGAGTATGTC 57.839 55.000 0.00 0.00 45.24 3.06
6598 6910 4.454678 AGAGAAACATCTGCAGTTCACAA 58.545 39.130 14.67 0.00 0.00 3.33
6604 6916 7.661437 AGAAACATCTGCAGTTCACAATTACTA 59.339 33.333 14.67 0.00 0.00 1.82
6625 6937 3.538591 AGAGATTGATTGCGATTGAGCA 58.461 40.909 0.00 0.00 46.54 4.26
6667 6979 5.001237 TGGAGCAATGCATTTAACTGATG 57.999 39.130 9.83 0.00 0.00 3.07
6687 6999 6.691508 TGATGCTACATAATAGAATGTCGCT 58.308 36.000 12.70 1.91 44.55 4.93
6689 7001 8.303876 TGATGCTACATAATAGAATGTCGCTTA 58.696 33.333 12.70 0.00 44.55 3.09
6692 7004 8.141909 TGCTACATAATAGAATGTCGCTTACTT 58.858 33.333 12.70 0.00 44.55 2.24
6696 7008 8.818057 ACATAATAGAATGTCGCTTACTTGTTC 58.182 33.333 0.00 0.00 35.08 3.18
6762 7084 9.929180 TTATTCAGGATCGTATTTTCATAGGAG 57.071 33.333 0.00 0.00 34.12 3.69
6763 7085 5.784177 TCAGGATCGTATTTTCATAGGAGC 58.216 41.667 0.00 0.00 36.06 4.70
6764 7086 5.540337 TCAGGATCGTATTTTCATAGGAGCT 59.460 40.000 0.00 0.00 36.71 4.09
6765 7087 6.042093 TCAGGATCGTATTTTCATAGGAGCTT 59.958 38.462 0.00 0.00 36.71 3.74
6766 7088 6.146837 CAGGATCGTATTTTCATAGGAGCTTG 59.853 42.308 0.00 0.80 37.10 4.01
6767 7089 6.042093 AGGATCGTATTTTCATAGGAGCTTGA 59.958 38.462 0.00 0.00 36.71 3.02
6768 7090 6.876257 GGATCGTATTTTCATAGGAGCTTGAT 59.124 38.462 0.00 0.00 36.71 2.57
6769 7091 8.035394 GGATCGTATTTTCATAGGAGCTTGATA 58.965 37.037 0.00 0.00 36.71 2.15
6770 7092 9.593134 GATCGTATTTTCATAGGAGCTTGATAT 57.407 33.333 0.00 0.00 34.65 1.63
6771 7093 8.988064 TCGTATTTTCATAGGAGCTTGATATC 57.012 34.615 0.00 0.00 0.00 1.63
6772 7094 8.807118 TCGTATTTTCATAGGAGCTTGATATCT 58.193 33.333 3.98 0.00 0.00 1.98
6773 7095 8.867935 CGTATTTTCATAGGAGCTTGATATCTG 58.132 37.037 3.98 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 8.700051 CCACCCCATAATATTGTTTGATTGTTA 58.300 33.333 0.00 0.00 0.00 2.41
18 19 7.563906 CCACCCCATAATATTGTTTGATTGTT 58.436 34.615 0.00 0.00 0.00 2.83
19 20 6.407979 GCCACCCCATAATATTGTTTGATTGT 60.408 38.462 0.00 0.00 0.00 2.71
20 21 5.990996 GCCACCCCATAATATTGTTTGATTG 59.009 40.000 0.00 0.00 0.00 2.67
21 22 5.221422 CGCCACCCCATAATATTGTTTGATT 60.221 40.000 0.00 0.00 0.00 2.57
22 23 4.280677 CGCCACCCCATAATATTGTTTGAT 59.719 41.667 0.00 0.00 0.00 2.57
23 24 3.634448 CGCCACCCCATAATATTGTTTGA 59.366 43.478 0.00 0.00 0.00 2.69
24 25 3.243704 CCGCCACCCCATAATATTGTTTG 60.244 47.826 0.00 0.00 0.00 2.93
25 26 2.962421 CCGCCACCCCATAATATTGTTT 59.038 45.455 0.00 0.00 0.00 2.83
26 27 2.593026 CCGCCACCCCATAATATTGTT 58.407 47.619 0.00 0.00 0.00 2.83
27 28 1.203001 CCCGCCACCCCATAATATTGT 60.203 52.381 0.00 0.00 0.00 2.71
28 29 1.544724 CCCGCCACCCCATAATATTG 58.455 55.000 0.00 0.00 0.00 1.90
29 30 0.251608 GCCCGCCACCCCATAATATT 60.252 55.000 0.00 0.00 0.00 1.28
30 31 1.382629 GCCCGCCACCCCATAATAT 59.617 57.895 0.00 0.00 0.00 1.28
31 32 2.836187 GGCCCGCCACCCCATAATA 61.836 63.158 0.00 0.00 35.81 0.98
32 33 4.218686 GGCCCGCCACCCCATAAT 62.219 66.667 0.00 0.00 35.81 1.28
42 43 3.731766 ATACACCCATTGGCCCGCC 62.732 63.158 0.00 0.00 33.59 6.13
43 44 2.123897 ATACACCCATTGGCCCGC 60.124 61.111 0.00 0.00 33.59 6.13
44 45 2.489275 GCATACACCCATTGGCCCG 61.489 63.158 0.00 0.00 33.59 6.13
45 46 1.381056 TGCATACACCCATTGGCCC 60.381 57.895 0.00 0.00 33.59 5.80
46 47 1.394266 CCTGCATACACCCATTGGCC 61.394 60.000 0.00 0.00 33.59 5.36
47 48 1.394266 CCCTGCATACACCCATTGGC 61.394 60.000 0.00 0.00 33.59 4.52
48 49 0.756442 CCCCTGCATACACCCATTGG 60.756 60.000 0.00 0.00 37.80 3.16
49 50 1.394266 GCCCCTGCATACACCCATTG 61.394 60.000 0.00 0.00 37.47 2.82
50 51 1.076044 GCCCCTGCATACACCCATT 60.076 57.895 0.00 0.00 37.47 3.16
51 52 2.315794 TGCCCCTGCATACACCCAT 61.316 57.895 0.00 0.00 44.23 4.00
52 53 2.938243 TGCCCCTGCATACACCCA 60.938 61.111 0.00 0.00 44.23 4.51
61 62 2.145536 CTTTTTCAACAATGCCCCTGC 58.854 47.619 0.00 0.00 38.26 4.85
62 63 3.070015 AGACTTTTTCAACAATGCCCCTG 59.930 43.478 0.00 0.00 0.00 4.45
63 64 3.308401 AGACTTTTTCAACAATGCCCCT 58.692 40.909 0.00 0.00 0.00 4.79
64 65 3.069443 TGAGACTTTTTCAACAATGCCCC 59.931 43.478 0.00 0.00 0.00 5.80
65 66 4.320608 TGAGACTTTTTCAACAATGCCC 57.679 40.909 0.00 0.00 0.00 5.36
66 67 6.660887 TTTTGAGACTTTTTCAACAATGCC 57.339 33.333 0.00 0.00 34.50 4.40
67 68 7.742151 ACTTTTTGAGACTTTTTCAACAATGC 58.258 30.769 0.00 0.00 34.50 3.56
68 69 8.382875 GGACTTTTTGAGACTTTTTCAACAATG 58.617 33.333 0.00 0.00 34.50 2.82
69 70 7.549134 GGGACTTTTTGAGACTTTTTCAACAAT 59.451 33.333 0.00 0.00 34.50 2.71
70 71 6.871492 GGGACTTTTTGAGACTTTTTCAACAA 59.129 34.615 0.00 0.00 34.50 2.83
71 72 6.394809 GGGACTTTTTGAGACTTTTTCAACA 58.605 36.000 0.00 0.00 34.50 3.33
72 73 5.810587 GGGGACTTTTTGAGACTTTTTCAAC 59.189 40.000 0.00 0.00 34.50 3.18
73 74 5.482175 TGGGGACTTTTTGAGACTTTTTCAA 59.518 36.000 0.00 0.00 33.00 2.69
74 75 5.020132 TGGGGACTTTTTGAGACTTTTTCA 58.980 37.500 0.00 0.00 0.00 2.69
75 76 5.592104 TGGGGACTTTTTGAGACTTTTTC 57.408 39.130 0.00 0.00 0.00 2.29
76 77 6.367374 TTTGGGGACTTTTTGAGACTTTTT 57.633 33.333 0.00 0.00 0.00 1.94
77 78 6.212589 TCTTTTGGGGACTTTTTGAGACTTTT 59.787 34.615 0.00 0.00 0.00 2.27
78 79 5.719563 TCTTTTGGGGACTTTTTGAGACTTT 59.280 36.000 0.00 0.00 0.00 2.66
79 80 5.127194 GTCTTTTGGGGACTTTTTGAGACTT 59.873 40.000 0.00 0.00 0.00 3.01
80 81 4.645136 GTCTTTTGGGGACTTTTTGAGACT 59.355 41.667 0.00 0.00 0.00 3.24
81 82 4.645136 AGTCTTTTGGGGACTTTTTGAGAC 59.355 41.667 0.00 0.00 40.65 3.36
82 83 4.867086 AGTCTTTTGGGGACTTTTTGAGA 58.133 39.130 0.00 0.00 40.65 3.27
83 84 4.889995 AGAGTCTTTTGGGGACTTTTTGAG 59.110 41.667 0.00 0.00 43.13 3.02
84 85 4.867086 AGAGTCTTTTGGGGACTTTTTGA 58.133 39.130 0.00 0.00 43.13 2.69
85 86 4.038042 GGAGAGTCTTTTGGGGACTTTTTG 59.962 45.833 0.00 0.00 43.13 2.44
86 87 4.079154 AGGAGAGTCTTTTGGGGACTTTTT 60.079 41.667 0.00 0.00 43.13 1.94
87 88 3.463704 AGGAGAGTCTTTTGGGGACTTTT 59.536 43.478 0.00 0.00 43.13 2.27
88 89 3.056832 AGGAGAGTCTTTTGGGGACTTT 58.943 45.455 0.00 0.00 43.13 2.66
89 90 2.707554 AGGAGAGTCTTTTGGGGACTT 58.292 47.619 0.00 0.00 43.13 3.01
90 91 2.424684 AGGAGAGTCTTTTGGGGACT 57.575 50.000 0.00 0.00 45.37 3.85
91 92 4.286291 TCTTAAGGAGAGTCTTTTGGGGAC 59.714 45.833 1.85 0.00 0.00 4.46
92 93 4.499472 TCTTAAGGAGAGTCTTTTGGGGA 58.501 43.478 1.85 0.00 0.00 4.81
93 94 4.837972 CTCTTAAGGAGAGTCTTTTGGGG 58.162 47.826 1.85 0.00 45.69 4.96
104 105 7.896496 ACTAAATGGAGAAGACTCTTAAGGAGA 59.104 37.037 1.85 0.00 44.45 3.71
105 106 8.073467 ACTAAATGGAGAAGACTCTTAAGGAG 57.927 38.462 1.85 1.79 46.87 3.69
106 107 7.124448 GGACTAAATGGAGAAGACTCTTAAGGA 59.876 40.741 1.85 0.00 42.28 3.36
107 108 7.269316 GGACTAAATGGAGAAGACTCTTAAGG 58.731 42.308 1.85 0.00 42.28 2.69
108 109 7.093289 TGGGACTAAATGGAGAAGACTCTTAAG 60.093 40.741 0.00 0.00 42.28 1.85
109 110 6.729100 TGGGACTAAATGGAGAAGACTCTTAA 59.271 38.462 0.00 0.00 42.28 1.85
110 111 6.261435 TGGGACTAAATGGAGAAGACTCTTA 58.739 40.000 0.00 0.00 42.28 2.10
111 112 5.094387 TGGGACTAAATGGAGAAGACTCTT 58.906 41.667 0.00 0.00 42.28 2.85
112 113 4.689062 TGGGACTAAATGGAGAAGACTCT 58.311 43.478 0.00 0.00 42.28 3.24
113 114 5.422214 TTGGGACTAAATGGAGAAGACTC 57.578 43.478 0.00 0.00 41.94 3.36
114 115 5.843019 TTTGGGACTAAATGGAGAAGACT 57.157 39.130 0.00 0.00 0.00 3.24
115 116 6.570571 GCTTTTTGGGACTAAATGGAGAAGAC 60.571 42.308 0.00 0.00 0.00 3.01
116 117 5.476945 GCTTTTTGGGACTAAATGGAGAAGA 59.523 40.000 0.00 0.00 0.00 2.87
117 118 5.243730 TGCTTTTTGGGACTAAATGGAGAAG 59.756 40.000 0.00 0.00 0.00 2.85
118 119 5.144100 TGCTTTTTGGGACTAAATGGAGAA 58.856 37.500 0.00 0.00 0.00 2.87
119 120 4.735369 TGCTTTTTGGGACTAAATGGAGA 58.265 39.130 0.00 0.00 0.00 3.71
120 121 5.011023 AGTTGCTTTTTGGGACTAAATGGAG 59.989 40.000 0.00 0.00 0.00 3.86
121 122 4.898861 AGTTGCTTTTTGGGACTAAATGGA 59.101 37.500 0.00 0.00 0.00 3.41
122 123 5.213891 AGTTGCTTTTTGGGACTAAATGG 57.786 39.130 0.00 0.00 0.00 3.16
123 124 7.552458 AAAAGTTGCTTTTTGGGACTAAATG 57.448 32.000 1.46 0.00 40.23 2.32
124 125 8.482943 ACTAAAAGTTGCTTTTTGGGACTAAAT 58.517 29.630 11.39 0.00 40.23 1.40
125 126 7.842982 ACTAAAAGTTGCTTTTTGGGACTAAA 58.157 30.769 11.39 0.00 40.23 1.85
126 127 7.412853 ACTAAAAGTTGCTTTTTGGGACTAA 57.587 32.000 11.39 0.00 40.23 2.24
127 128 6.040054 GGACTAAAAGTTGCTTTTTGGGACTA 59.960 38.462 11.39 0.00 40.23 2.59
128 129 5.163447 GGACTAAAAGTTGCTTTTTGGGACT 60.163 40.000 11.39 0.00 40.23 3.85
129 130 5.047847 GGACTAAAAGTTGCTTTTTGGGAC 58.952 41.667 11.39 6.71 40.23 4.46
130 131 4.100344 GGGACTAAAAGTTGCTTTTTGGGA 59.900 41.667 11.39 0.00 40.23 4.37
131 132 4.100963 AGGGACTAAAAGTTGCTTTTTGGG 59.899 41.667 11.39 6.28 40.23 4.12
132 133 5.276461 AGGGACTAAAAGTTGCTTTTTGG 57.724 39.130 11.39 8.20 40.23 3.28
133 134 7.039313 ACTAGGGACTAAAAGTTGCTTTTTG 57.961 36.000 11.39 11.68 42.17 2.44
134 135 7.997223 ACTACTAGGGACTAAAAGTTGCTTTTT 59.003 33.333 11.39 0.00 42.17 1.94
135 136 7.515586 ACTACTAGGGACTAAAAGTTGCTTTT 58.484 34.615 10.99 10.99 42.17 2.27
136 137 7.075851 ACTACTAGGGACTAAAAGTTGCTTT 57.924 36.000 0.00 0.00 42.17 3.51
137 138 6.295745 GGACTACTAGGGACTAAAAGTTGCTT 60.296 42.308 0.00 0.00 42.17 3.91
138 139 5.187381 GGACTACTAGGGACTAAAAGTTGCT 59.813 44.000 0.00 0.00 42.17 3.91
139 140 5.417811 GGACTACTAGGGACTAAAAGTTGC 58.582 45.833 0.00 0.00 42.17 4.17
140 141 5.720520 AGGGACTACTAGGGACTAAAAGTTG 59.279 44.000 0.00 0.00 37.45 3.16
141 142 5.913277 AGGGACTACTAGGGACTAAAAGTT 58.087 41.667 0.00 0.00 37.45 2.66
142 143 5.517924 GAGGGACTACTAGGGACTAAAAGT 58.482 45.833 0.00 0.00 39.34 2.66
143 144 4.894705 GGAGGGACTACTAGGGACTAAAAG 59.105 50.000 0.00 0.00 39.34 2.27
144 145 4.326450 GGGAGGGACTACTAGGGACTAAAA 60.326 50.000 0.00 0.00 39.34 1.52
145 146 3.206185 GGGAGGGACTACTAGGGACTAAA 59.794 52.174 0.00 0.00 39.34 1.85
146 147 2.788215 GGGAGGGACTACTAGGGACTAA 59.212 54.545 0.00 0.00 39.34 2.24
147 148 2.426844 GGGAGGGACTACTAGGGACTA 58.573 57.143 0.00 0.00 40.83 2.59
148 149 1.233857 GGGAGGGACTACTAGGGACT 58.766 60.000 0.00 0.00 40.83 3.85
149 150 0.178995 CGGGAGGGACTACTAGGGAC 60.179 65.000 0.00 0.00 40.83 4.46
150 151 0.625683 ACGGGAGGGACTACTAGGGA 60.626 60.000 0.00 0.00 40.83 4.20
151 152 0.261109 AACGGGAGGGACTACTAGGG 59.739 60.000 0.00 0.00 40.83 3.53
152 153 1.755380 CAAACGGGAGGGACTACTAGG 59.245 57.143 0.00 0.00 40.83 3.02
153 154 2.731572 TCAAACGGGAGGGACTACTAG 58.268 52.381 0.00 0.00 40.83 2.57
154 155 2.905415 TCAAACGGGAGGGACTACTA 57.095 50.000 0.00 0.00 40.83 1.82
155 156 2.249309 ATCAAACGGGAGGGACTACT 57.751 50.000 0.00 0.00 40.83 2.57
156 157 4.476628 TTAATCAAACGGGAGGGACTAC 57.523 45.455 0.00 0.00 41.55 2.73
157 158 5.502089 TTTTAATCAAACGGGAGGGACTA 57.498 39.130 0.00 0.00 41.55 2.59
159 160 4.521639 ACTTTTTAATCAAACGGGAGGGAC 59.478 41.667 0.00 0.00 0.00 4.46
160 161 4.732065 ACTTTTTAATCAAACGGGAGGGA 58.268 39.130 0.00 0.00 0.00 4.20
161 162 4.765339 AGACTTTTTAATCAAACGGGAGGG 59.235 41.667 0.00 0.00 0.00 4.30
162 163 5.959618 AGACTTTTTAATCAAACGGGAGG 57.040 39.130 0.00 0.00 0.00 4.30
163 164 8.319143 TCTTAGACTTTTTAATCAAACGGGAG 57.681 34.615 0.00 0.00 0.00 4.30
164 165 7.389607 CCTCTTAGACTTTTTAATCAAACGGGA 59.610 37.037 0.00 0.00 0.00 5.14
165 166 7.361799 CCCTCTTAGACTTTTTAATCAAACGGG 60.362 40.741 0.00 0.00 0.00 5.28
166 167 7.389607 TCCCTCTTAGACTTTTTAATCAAACGG 59.610 37.037 0.00 0.00 0.00 4.44
167 168 8.228464 GTCCCTCTTAGACTTTTTAATCAAACG 58.772 37.037 0.00 0.00 0.00 3.60
168 169 9.286170 AGTCCCTCTTAGACTTTTTAATCAAAC 57.714 33.333 0.00 0.00 41.87 2.93
195 196 6.890814 TGACTTTTTGGTGTAGGGACTAAAAA 59.109 34.615 0.00 0.00 45.48 1.94
196 197 6.424883 TGACTTTTTGGTGTAGGGACTAAAA 58.575 36.000 0.00 0.00 45.48 1.52
197 198 6.003859 TGACTTTTTGGTGTAGGGACTAAA 57.996 37.500 0.00 0.00 45.48 1.85
198 199 5.633655 TGACTTTTTGGTGTAGGGACTAA 57.366 39.130 0.00 0.00 45.48 2.24
199 200 5.836024 ATGACTTTTTGGTGTAGGGACTA 57.164 39.130 0.00 0.00 41.75 2.59
200 201 4.724279 ATGACTTTTTGGTGTAGGGACT 57.276 40.909 0.00 0.00 46.37 3.85
201 202 4.022329 CCAATGACTTTTTGGTGTAGGGAC 60.022 45.833 0.00 0.00 39.05 4.46
202 203 4.141135 TCCAATGACTTTTTGGTGTAGGGA 60.141 41.667 2.65 0.00 43.41 4.20
203 204 4.148838 TCCAATGACTTTTTGGTGTAGGG 58.851 43.478 2.65 0.00 43.41 3.53
204 205 5.782893 TTCCAATGACTTTTTGGTGTAGG 57.217 39.130 2.65 0.00 43.41 3.18
205 206 6.568869 TGTTTCCAATGACTTTTTGGTGTAG 58.431 36.000 2.65 0.00 43.41 2.74
206 207 6.531503 TGTTTCCAATGACTTTTTGGTGTA 57.468 33.333 2.65 0.00 43.41 2.90
207 208 5.413309 TGTTTCCAATGACTTTTTGGTGT 57.587 34.783 2.65 0.00 43.41 4.16
208 209 6.148480 TGTTTGTTTCCAATGACTTTTTGGTG 59.852 34.615 2.65 0.00 43.41 4.17
209 210 6.148645 GTGTTTGTTTCCAATGACTTTTTGGT 59.851 34.615 2.65 0.00 43.41 3.67
210 211 6.403092 GGTGTTTGTTTCCAATGACTTTTTGG 60.403 38.462 0.00 0.00 44.14 3.28
211 212 6.403092 GGGTGTTTGTTTCCAATGACTTTTTG 60.403 38.462 0.00 0.00 0.00 2.44
212 213 5.645929 GGGTGTTTGTTTCCAATGACTTTTT 59.354 36.000 0.00 0.00 0.00 1.94
213 214 5.182487 GGGTGTTTGTTTCCAATGACTTTT 58.818 37.500 0.00 0.00 0.00 2.27
214 215 4.383661 GGGGTGTTTGTTTCCAATGACTTT 60.384 41.667 0.00 0.00 0.00 2.66
215 216 3.133901 GGGGTGTTTGTTTCCAATGACTT 59.866 43.478 0.00 0.00 0.00 3.01
216 217 2.698274 GGGGTGTTTGTTTCCAATGACT 59.302 45.455 0.00 0.00 0.00 3.41
217 218 2.224185 GGGGGTGTTTGTTTCCAATGAC 60.224 50.000 0.00 0.00 0.00 3.06
218 219 2.043227 GGGGGTGTTTGTTTCCAATGA 58.957 47.619 0.00 0.00 0.00 2.57
219 220 2.046292 AGGGGGTGTTTGTTTCCAATG 58.954 47.619 0.00 0.00 0.00 2.82
220 221 2.046292 CAGGGGGTGTTTGTTTCCAAT 58.954 47.619 0.00 0.00 0.00 3.16
221 222 1.273324 ACAGGGGGTGTTTGTTTCCAA 60.273 47.619 0.00 0.00 34.94 3.53
222 223 0.336737 ACAGGGGGTGTTTGTTTCCA 59.663 50.000 0.00 0.00 34.94 3.53
223 224 3.217321 ACAGGGGGTGTTTGTTTCC 57.783 52.632 0.00 0.00 34.94 3.13
231 232 2.041216 GGACTAAATGAACAGGGGGTGT 59.959 50.000 0.00 0.00 43.24 4.16
232 233 2.620627 GGGACTAAATGAACAGGGGGTG 60.621 54.545 0.00 0.00 0.00 4.61
233 234 1.639108 GGGACTAAATGAACAGGGGGT 59.361 52.381 0.00 0.00 0.00 4.95
234 235 1.063942 GGGGACTAAATGAACAGGGGG 60.064 57.143 0.00 0.00 0.00 5.40
235 236 1.638589 TGGGGACTAAATGAACAGGGG 59.361 52.381 0.00 0.00 0.00 4.79
236 237 3.449746 TTGGGGACTAAATGAACAGGG 57.550 47.619 0.00 0.00 0.00 4.45
237 238 4.321974 GCTTTTGGGGACTAAATGAACAGG 60.322 45.833 0.00 0.00 34.62 4.00
238 239 4.280677 TGCTTTTGGGGACTAAATGAACAG 59.719 41.667 0.00 0.00 34.62 3.16
239 240 4.219115 TGCTTTTGGGGACTAAATGAACA 58.781 39.130 0.00 0.00 34.62 3.18
240 241 4.864704 TGCTTTTGGGGACTAAATGAAC 57.135 40.909 0.00 0.00 34.62 3.18
241 242 4.898861 AGTTGCTTTTGGGGACTAAATGAA 59.101 37.500 0.00 0.00 34.62 2.57
242 243 4.479158 AGTTGCTTTTGGGGACTAAATGA 58.521 39.130 0.00 0.00 34.62 2.57
243 244 4.871933 AGTTGCTTTTGGGGACTAAATG 57.128 40.909 0.00 0.00 34.62 2.32
244 245 5.887214 AAAGTTGCTTTTGGGGACTAAAT 57.113 34.783 0.00 0.00 34.62 1.40
245 246 5.685520 AAAAGTTGCTTTTGGGGACTAAA 57.314 34.783 6.11 0.00 41.38 1.85
246 247 5.894964 ACTAAAAGTTGCTTTTGGGGACTAA 59.105 36.000 17.54 0.00 43.13 2.24
247 248 5.451354 ACTAAAAGTTGCTTTTGGGGACTA 58.549 37.500 17.54 0.00 43.13 2.59
248 249 4.286707 ACTAAAAGTTGCTTTTGGGGACT 58.713 39.130 17.54 0.00 43.13 3.85
249 250 4.500887 GGACTAAAAGTTGCTTTTGGGGAC 60.501 45.833 17.54 10.59 43.13 4.46
250 251 3.639561 GGACTAAAAGTTGCTTTTGGGGA 59.360 43.478 17.54 0.48 43.13 4.81
251 252 3.244078 GGGACTAAAAGTTGCTTTTGGGG 60.244 47.826 17.54 10.36 43.13 4.96
252 253 3.641436 AGGGACTAAAAGTTGCTTTTGGG 59.359 43.478 17.54 12.10 43.13 4.12
253 254 4.937201 AGGGACTAAAAGTTGCTTTTGG 57.063 40.909 14.80 14.16 42.61 3.28
254 255 6.635030 ACTAGGGACTAAAAGTTGCTTTTG 57.365 37.500 14.80 8.74 42.61 2.44
255 256 7.515586 ACTACTAGGGACTAAAAGTTGCTTTT 58.484 34.615 10.99 10.99 42.17 2.27
256 257 7.016366 AGACTACTAGGGACTAAAAGTTGCTTT 59.984 37.037 0.00 0.00 42.17 3.51
257 258 6.497606 AGACTACTAGGGACTAAAAGTTGCTT 59.502 38.462 0.00 0.00 42.17 3.91
258 259 6.017830 AGACTACTAGGGACTAAAAGTTGCT 58.982 40.000 0.00 0.00 42.17 3.91
259 260 6.153170 AGAGACTACTAGGGACTAAAAGTTGC 59.847 42.308 0.00 0.00 42.17 4.17
260 261 7.706100 AGAGACTACTAGGGACTAAAAGTTG 57.294 40.000 0.00 0.00 42.17 3.16
261 262 7.396907 GGAAGAGACTACTAGGGACTAAAAGTT 59.603 40.741 0.00 0.00 42.17 2.66
262 263 6.891361 GGAAGAGACTACTAGGGACTAAAAGT 59.109 42.308 0.00 0.00 42.17 2.66
263 264 6.038492 CGGAAGAGACTACTAGGGACTAAAAG 59.962 46.154 0.00 0.00 42.17 2.27
264 265 5.884792 CGGAAGAGACTACTAGGGACTAAAA 59.115 44.000 0.00 0.00 42.17 1.52
265 266 5.045286 ACGGAAGAGACTACTAGGGACTAAA 60.045 44.000 0.00 0.00 42.17 1.85
266 267 4.472833 ACGGAAGAGACTACTAGGGACTAA 59.527 45.833 0.00 0.00 42.17 2.24
267 268 4.036518 ACGGAAGAGACTACTAGGGACTA 58.963 47.826 0.00 0.00 41.75 2.59
268 269 2.845586 ACGGAAGAGACTACTAGGGACT 59.154 50.000 0.00 0.00 46.37 3.85
269 270 3.280197 ACGGAAGAGACTACTAGGGAC 57.720 52.381 0.00 0.00 0.00 4.46
270 271 4.313020 AAACGGAAGAGACTACTAGGGA 57.687 45.455 0.00 0.00 0.00 4.20
271 272 6.712179 ATTAAACGGAAGAGACTACTAGGG 57.288 41.667 0.00 0.00 0.00 3.53
317 318 7.616542 AGGACTTTTTGGTGTAGGAACTAAAAA 59.383 33.333 9.84 9.84 45.48 1.94
318 319 7.120716 AGGACTTTTTGGTGTAGGAACTAAAA 58.879 34.615 0.00 0.00 45.48 1.52
319 320 6.665695 AGGACTTTTTGGTGTAGGAACTAAA 58.334 36.000 0.00 0.00 45.48 1.85
320 321 6.256643 AGGACTTTTTGGTGTAGGAACTAA 57.743 37.500 0.00 0.00 45.48 2.24
321 322 5.899631 AGGACTTTTTGGTGTAGGAACTA 57.100 39.130 0.00 0.00 41.75 2.24
322 323 4.790718 AGGACTTTTTGGTGTAGGAACT 57.209 40.909 0.00 0.00 46.37 3.01
323 324 4.037565 CCAAGGACTTTTTGGTGTAGGAAC 59.962 45.833 0.00 0.00 40.15 3.62
324 325 4.079672 TCCAAGGACTTTTTGGTGTAGGAA 60.080 41.667 4.14 0.00 44.35 3.36
325 326 3.460340 TCCAAGGACTTTTTGGTGTAGGA 59.540 43.478 4.14 0.00 44.35 2.94
326 327 3.827722 TCCAAGGACTTTTTGGTGTAGG 58.172 45.455 4.14 0.00 44.35 3.18
327 328 5.126384 TGTTTCCAAGGACTTTTTGGTGTAG 59.874 40.000 4.14 0.00 44.35 2.74
328 329 5.017490 TGTTTCCAAGGACTTTTTGGTGTA 58.983 37.500 4.14 0.00 44.35 2.90
329 330 3.835395 TGTTTCCAAGGACTTTTTGGTGT 59.165 39.130 4.14 0.00 44.35 4.16
330 331 4.464069 TGTTTCCAAGGACTTTTTGGTG 57.536 40.909 4.14 0.00 44.35 4.17
331 332 5.221742 TGTTTGTTTCCAAGGACTTTTTGGT 60.222 36.000 4.14 0.00 44.35 3.67
332 333 5.121611 GTGTTTGTTTCCAAGGACTTTTTGG 59.878 40.000 0.00 0.00 45.17 3.28
333 334 5.121611 GGTGTTTGTTTCCAAGGACTTTTTG 59.878 40.000 0.00 0.00 0.00 2.44
334 335 5.242434 GGTGTTTGTTTCCAAGGACTTTTT 58.758 37.500 0.00 0.00 0.00 1.94
335 336 4.323180 GGGTGTTTGTTTCCAAGGACTTTT 60.323 41.667 0.00 0.00 0.00 2.27
336 337 3.196901 GGGTGTTTGTTTCCAAGGACTTT 59.803 43.478 0.00 0.00 0.00 2.66
337 338 2.764010 GGGTGTTTGTTTCCAAGGACTT 59.236 45.455 0.00 0.00 0.00 3.01
338 339 2.384828 GGGTGTTTGTTTCCAAGGACT 58.615 47.619 0.00 0.00 0.00 3.85
339 340 1.411246 GGGGTGTTTGTTTCCAAGGAC 59.589 52.381 0.00 0.00 0.00 3.85
340 341 1.289530 AGGGGTGTTTGTTTCCAAGGA 59.710 47.619 0.00 0.00 0.00 3.36
341 342 1.788229 AGGGGTGTTTGTTTCCAAGG 58.212 50.000 0.00 0.00 0.00 3.61
342 343 4.160626 TGTTTAGGGGTGTTTGTTTCCAAG 59.839 41.667 0.00 0.00 0.00 3.61
343 344 4.094476 TGTTTAGGGGTGTTTGTTTCCAA 58.906 39.130 0.00 0.00 0.00 3.53
344 345 3.702045 CTGTTTAGGGGTGTTTGTTTCCA 59.298 43.478 0.00 0.00 0.00 3.53
345 346 3.491964 GCTGTTTAGGGGTGTTTGTTTCC 60.492 47.826 0.00 0.00 0.00 3.13
346 347 3.491964 GGCTGTTTAGGGGTGTTTGTTTC 60.492 47.826 0.00 0.00 0.00 2.78
347 348 2.432874 GGCTGTTTAGGGGTGTTTGTTT 59.567 45.455 0.00 0.00 0.00 2.83
348 349 2.036387 GGCTGTTTAGGGGTGTTTGTT 58.964 47.619 0.00 0.00 0.00 2.83
349 350 1.699730 GGCTGTTTAGGGGTGTTTGT 58.300 50.000 0.00 0.00 0.00 2.83
350 351 0.966179 GGGCTGTTTAGGGGTGTTTG 59.034 55.000 0.00 0.00 0.00 2.93
351 352 0.178944 GGGGCTGTTTAGGGGTGTTT 60.179 55.000 0.00 0.00 0.00 2.83
352 353 1.463375 GGGGCTGTTTAGGGGTGTT 59.537 57.895 0.00 0.00 0.00 3.32
353 354 2.902457 CGGGGCTGTTTAGGGGTGT 61.902 63.158 0.00 0.00 0.00 4.16
354 355 2.045340 CGGGGCTGTTTAGGGGTG 60.045 66.667 0.00 0.00 0.00 4.61
355 356 2.133359 GAACGGGGCTGTTTAGGGGT 62.133 60.000 0.00 0.00 30.75 4.95
356 357 1.378119 GAACGGGGCTGTTTAGGGG 60.378 63.158 0.00 0.00 30.75 4.79
357 358 0.034477 ATGAACGGGGCTGTTTAGGG 60.034 55.000 0.00 0.00 30.75 3.53
358 359 1.834188 AATGAACGGGGCTGTTTAGG 58.166 50.000 0.00 0.00 30.75 2.69
359 360 2.817258 TGAAATGAACGGGGCTGTTTAG 59.183 45.455 0.00 0.00 30.75 1.85
360 361 2.865079 TGAAATGAACGGGGCTGTTTA 58.135 42.857 0.00 0.00 30.75 2.01
361 362 1.698506 TGAAATGAACGGGGCTGTTT 58.301 45.000 0.00 0.00 30.75 2.83
362 363 1.698506 TTGAAATGAACGGGGCTGTT 58.301 45.000 0.00 0.00 34.02 3.16
363 364 1.613437 CTTTGAAATGAACGGGGCTGT 59.387 47.619 0.00 0.00 0.00 4.40
364 365 1.067635 CCTTTGAAATGAACGGGGCTG 60.068 52.381 0.00 0.00 0.00 4.85
365 366 1.203001 TCCTTTGAAATGAACGGGGCT 60.203 47.619 0.00 0.00 0.00 5.19
366 367 1.253100 TCCTTTGAAATGAACGGGGC 58.747 50.000 0.00 0.00 0.00 5.80
367 368 2.625790 TGTTCCTTTGAAATGAACGGGG 59.374 45.455 17.15 0.00 40.92 5.73
368 369 4.048504 GTTGTTCCTTTGAAATGAACGGG 58.951 43.478 17.15 0.00 40.92 5.28
369 370 4.677584 TGTTGTTCCTTTGAAATGAACGG 58.322 39.130 17.15 0.00 40.92 4.44
370 371 4.207019 GCTGTTGTTCCTTTGAAATGAACG 59.793 41.667 17.15 7.56 40.92 3.95
371 372 4.507756 GGCTGTTGTTCCTTTGAAATGAAC 59.492 41.667 16.00 16.00 39.02 3.18
372 373 4.442753 GGGCTGTTGTTCCTTTGAAATGAA 60.443 41.667 0.00 0.00 30.79 2.57
373 374 3.069443 GGGCTGTTGTTCCTTTGAAATGA 59.931 43.478 0.00 0.00 30.79 2.57
374 375 3.392882 GGGCTGTTGTTCCTTTGAAATG 58.607 45.455 0.00 0.00 30.79 2.32
375 376 2.368548 GGGGCTGTTGTTCCTTTGAAAT 59.631 45.455 0.00 0.00 30.79 2.17
376 377 1.760029 GGGGCTGTTGTTCCTTTGAAA 59.240 47.619 0.00 0.00 30.79 2.69
377 378 1.408969 GGGGCTGTTGTTCCTTTGAA 58.591 50.000 0.00 0.00 0.00 2.69
378 379 0.821711 CGGGGCTGTTGTTCCTTTGA 60.822 55.000 0.00 0.00 0.00 2.69
379 380 1.106944 ACGGGGCTGTTGTTCCTTTG 61.107 55.000 0.00 0.00 0.00 2.77
380 381 0.396556 AACGGGGCTGTTGTTCCTTT 60.397 50.000 0.00 0.00 0.00 3.11
381 382 0.822121 GAACGGGGCTGTTGTTCCTT 60.822 55.000 0.54 0.00 36.79 3.36
382 383 1.228154 GAACGGGGCTGTTGTTCCT 60.228 57.895 0.54 0.00 36.79 3.36
383 384 0.893727 ATGAACGGGGCTGTTGTTCC 60.894 55.000 0.54 0.00 40.92 3.62
384 385 0.958822 AATGAACGGGGCTGTTGTTC 59.041 50.000 0.54 3.26 41.75 3.18
385 386 1.339929 GAAATGAACGGGGCTGTTGTT 59.660 47.619 0.54 0.00 30.75 2.83
386 387 0.958822 GAAATGAACGGGGCTGTTGT 59.041 50.000 0.54 0.00 30.75 3.32
387 388 0.958091 TGAAATGAACGGGGCTGTTG 59.042 50.000 0.54 0.00 30.75 3.33
388 389 1.698506 TTGAAATGAACGGGGCTGTT 58.301 45.000 0.00 0.00 34.02 3.16
389 390 1.613437 CTTTGAAATGAACGGGGCTGT 59.387 47.619 0.00 0.00 0.00 4.40
390 391 1.067635 CCTTTGAAATGAACGGGGCTG 60.068 52.381 0.00 0.00 0.00 4.85
391 392 1.203001 TCCTTTGAAATGAACGGGGCT 60.203 47.619 0.00 0.00 0.00 5.19
392 393 1.253100 TCCTTTGAAATGAACGGGGC 58.747 50.000 0.00 0.00 0.00 5.80
393 394 2.625790 TGTTCCTTTGAAATGAACGGGG 59.374 45.455 17.15 0.00 40.92 5.73
394 395 3.552068 GGTGTTCCTTTGAAATGAACGGG 60.552 47.826 17.15 0.00 40.92 5.28
395 396 3.638484 GGTGTTCCTTTGAAATGAACGG 58.362 45.455 17.15 0.00 40.92 4.44
396 397 3.242936 ACGGTGTTCCTTTGAAATGAACG 60.243 43.478 17.15 10.55 40.92 3.95
397 398 4.287720 GACGGTGTTCCTTTGAAATGAAC 58.712 43.478 16.00 16.00 39.02 3.18
398 399 3.316868 GGACGGTGTTCCTTTGAAATGAA 59.683 43.478 0.00 0.00 32.24 2.57
399 400 2.882137 GGACGGTGTTCCTTTGAAATGA 59.118 45.455 0.00 0.00 32.24 2.57
400 401 2.350388 CGGACGGTGTTCCTTTGAAATG 60.350 50.000 0.00 0.00 32.88 2.32
401 402 1.877443 CGGACGGTGTTCCTTTGAAAT 59.123 47.619 0.00 0.00 32.88 2.17
402 403 1.301423 CGGACGGTGTTCCTTTGAAA 58.699 50.000 0.00 0.00 32.88 2.69
420 421 4.025401 GCGGAGTGGTTTGTGGCG 62.025 66.667 0.00 0.00 0.00 5.69
423 424 0.813610 TCTGTGCGGAGTGGTTTGTG 60.814 55.000 0.00 0.00 0.00 3.33
424 425 0.107410 TTCTGTGCGGAGTGGTTTGT 60.107 50.000 0.00 0.00 0.00 2.83
474 477 2.032981 CGCTTGTTTCAGCTTGGGT 58.967 52.632 0.00 0.00 37.68 4.51
497 500 4.723789 AGTGATGGAACTGATGGTAGGATT 59.276 41.667 0.00 0.00 0.00 3.01
550 553 2.124942 GTGTGCTGAGCTAGGGGC 60.125 66.667 5.83 0.00 42.19 5.80
578 581 6.715264 TGTTTGGAGGGAGAAAAGAACTATTC 59.285 38.462 0.00 0.00 0.00 1.75
580 583 6.200878 TGTTTGGAGGGAGAAAAGAACTAT 57.799 37.500 0.00 0.00 0.00 2.12
581 584 5.640158 TGTTTGGAGGGAGAAAAGAACTA 57.360 39.130 0.00 0.00 0.00 2.24
594 597 8.143835 ACTGTTTCAGATTTATTTGTTTGGAGG 58.856 33.333 3.70 0.00 35.18 4.30
668 671 9.724839 CGTTGTCCTTTTGTTTTCTTTTAGATA 57.275 29.630 0.00 0.00 0.00 1.98
669 672 8.463607 TCGTTGTCCTTTTGTTTTCTTTTAGAT 58.536 29.630 0.00 0.00 0.00 1.98
673 676 6.217294 TGTCGTTGTCCTTTTGTTTTCTTTT 58.783 32.000 0.00 0.00 0.00 2.27
700 734 1.472480 GAGAGAGAGGAGTGAGTGTGC 59.528 57.143 0.00 0.00 0.00 4.57
786 823 3.947834 CTCACCTCTCTTTCTCTCTCTCC 59.052 52.174 0.00 0.00 0.00 3.71
815 856 4.538490 TGGTCTTCTCTCTACTTCTCTCCT 59.462 45.833 0.00 0.00 0.00 3.69
1359 1535 0.322906 TGAAGCTGAGCTCCTCGAGA 60.323 55.000 15.71 0.00 38.25 4.04
1429 1605 1.376037 GCAGGACCTGGAAGTTCCG 60.376 63.158 23.09 11.38 40.17 4.30
1561 1737 2.421619 AGAGAAGGAAGCAAAGAAGCG 58.578 47.619 0.00 0.00 40.15 4.68
1595 1771 3.904136 AAGCTCAAATGACCGAACAAG 57.096 42.857 0.00 0.00 0.00 3.16
1673 1849 5.587289 TCGTTGAACCATTTTGAGGAAAAG 58.413 37.500 0.00 0.00 34.53 2.27
1703 1881 6.751888 GCACACAAGAAAATCAGTTGTTTAGT 59.248 34.615 0.00 0.00 32.01 2.24
1720 1898 3.829886 ACCAAATGATACGCACACAAG 57.170 42.857 0.00 0.00 0.00 3.16
1784 1962 8.507249 CAAATCCTTTCACACTTAAACTAGGAG 58.493 37.037 0.00 0.00 0.00 3.69
1819 1997 7.051000 AGAGAAATAACAATAGCACCTCCTTC 58.949 38.462 0.00 0.00 0.00 3.46
1852 2030 2.373735 CACAAGAACACACTTGAGCG 57.626 50.000 14.00 0.82 46.85 5.03
1985 2164 0.898320 ACAGATCCGTTCACCAGAGG 59.102 55.000 0.00 0.00 0.00 3.69
1990 2169 0.541863 ATCCCACAGATCCGTTCACC 59.458 55.000 0.00 0.00 0.00 4.02
2141 2320 4.489771 GGGCTCATGACGTGGGGG 62.490 72.222 0.00 0.00 0.00 5.40
2296 2475 1.623311 GGGAAAACCACAGAAATGGGG 59.377 52.381 0.00 0.00 44.81 4.96
2388 2567 6.460953 GGGATCAAAGTTGCTTGTTTCACTAA 60.461 38.462 0.00 0.00 0.00 2.24
2425 2605 3.257393 CGCAAGCTCAACTAATCAGACT 58.743 45.455 0.00 0.00 0.00 3.24
2426 2606 2.349886 CCGCAAGCTCAACTAATCAGAC 59.650 50.000 0.00 0.00 0.00 3.51
2427 2607 2.621338 CCGCAAGCTCAACTAATCAGA 58.379 47.619 0.00 0.00 0.00 3.27
2485 2665 8.689061 TCCTTCAAGTTCCTTTTTAAAAGGTAC 58.311 33.333 27.60 27.60 37.80 3.34
2560 2744 9.268268 CTCAAAACTATCAAAACAGTACTGGTA 57.732 33.333 26.12 6.05 34.19 3.25
2646 2830 6.832520 ATGTTTGCACAGGATAACACAATA 57.167 33.333 1.67 0.00 35.94 1.90
2647 2831 5.726980 ATGTTTGCACAGGATAACACAAT 57.273 34.783 1.67 0.00 35.94 2.71
2648 2832 6.000840 TCTATGTTTGCACAGGATAACACAA 58.999 36.000 1.67 0.00 35.94 3.33
2714 2905 4.524053 CACCTGCATATATGGCATCAGAT 58.476 43.478 14.51 0.00 41.06 2.90
2717 2908 2.439409 GCACCTGCATATATGGCATCA 58.561 47.619 14.51 3.09 41.06 3.07
2835 3026 4.313282 TGTACTCTCTTTCTCGACGAGAA 58.687 43.478 31.15 31.15 45.45 2.87
2836 3027 3.922910 TGTACTCTCTTTCTCGACGAGA 58.077 45.455 23.27 23.27 36.86 4.04
2837 3028 3.927758 TCTGTACTCTCTTTCTCGACGAG 59.072 47.826 18.91 18.91 0.00 4.18
2838 3029 3.922910 TCTGTACTCTCTTTCTCGACGA 58.077 45.455 0.00 0.00 0.00 4.20
2839 3030 4.868450 ATCTGTACTCTCTTTCTCGACG 57.132 45.455 0.00 0.00 0.00 5.12
2840 3031 6.665474 TGTATCTGTACTCTCTTTCTCGAC 57.335 41.667 0.00 0.00 0.00 4.20
2841 3032 7.867305 AATGTATCTGTACTCTCTTTCTCGA 57.133 36.000 0.00 0.00 0.00 4.04
2842 3033 8.918961 AAAATGTATCTGTACTCTCTTTCTCG 57.081 34.615 0.00 0.00 0.00 4.04
2875 3066 5.971202 AGTGAATGTAGCGTTTGTTTTTCAG 59.029 36.000 0.00 0.00 0.00 3.02
2914 3105 6.150396 ACTGAATAGTAGGTCCAAGAATCG 57.850 41.667 0.00 0.00 34.74 3.34
2928 3119 4.899352 AGCTCAAGGACAACTGAATAGT 57.101 40.909 0.00 0.00 39.32 2.12
2957 3148 7.639945 AGTCAAAAATTTCTAGGACAAAGACG 58.360 34.615 11.54 0.00 0.00 4.18
2974 3165 6.090763 CGCACTCACATCTATGTAGTCAAAAA 59.909 38.462 0.00 0.00 39.39 1.94
3044 3235 7.338449 ACAAGGAAAGTGCTTCTAACAAACTAA 59.662 33.333 0.00 0.00 34.17 2.24
3053 3244 5.437060 ACAAGAACAAGGAAAGTGCTTCTA 58.563 37.500 0.00 0.00 32.50 2.10
3120 3311 6.730447 TCATCCAAAACAAGATATTGAGGGA 58.270 36.000 7.16 7.94 0.00 4.20
3121 3312 6.040166 CCTCATCCAAAACAAGATATTGAGGG 59.960 42.308 7.16 2.81 35.66 4.30
3211 3402 1.331214 CCACTTCCAAACCACAGCAT 58.669 50.000 0.00 0.00 0.00 3.79
3214 3405 1.408702 CCAACCACTTCCAAACCACAG 59.591 52.381 0.00 0.00 0.00 3.66
3229 3420 1.609783 CCCCCTCATCAGACCAACC 59.390 63.158 0.00 0.00 0.00 3.77
3383 3575 3.119849 CGGCAGTCCAGGAACTTATTTTG 60.120 47.826 0.00 0.00 34.60 2.44
3446 3638 4.154015 CGCAGGACACATCAACTTCAATAA 59.846 41.667 0.00 0.00 0.00 1.40
3458 3650 2.556189 TGCAATTTTACGCAGGACACAT 59.444 40.909 0.00 0.00 33.34 3.21
3473 3665 5.761234 ACTTCAATGCTCACAAAATGCAATT 59.239 32.000 0.00 0.00 40.24 2.32
3547 3741 4.832266 ACTGGATAAATCACAAGCAAACCA 59.168 37.500 0.00 0.00 0.00 3.67
3582 3776 1.968017 GCTAGCCACAGCAGCAACA 60.968 57.895 2.29 0.00 43.56 3.33
3615 3809 8.105829 CCTTTCCCATATTCTCAAGCATACTAT 58.894 37.037 0.00 0.00 0.00 2.12
3854 4048 3.683365 TTTATGTGCTCACTGCTCAGA 57.317 42.857 3.60 0.00 46.37 3.27
3884 4078 6.618287 TTGTTCATGTTCTTACTCCAGTTG 57.382 37.500 0.00 0.00 0.00 3.16
3912 4106 2.886523 TGCTTCATTCAGGGTTCAACTG 59.113 45.455 0.00 0.00 37.30 3.16
3985 4188 9.509956 AAGTAACAAATAACTGCAGGTACAATA 57.490 29.630 15.13 0.00 0.00 1.90
3987 4190 7.040961 GGAAGTAACAAATAACTGCAGGTACAA 60.041 37.037 15.13 0.00 0.00 2.41
4020 4231 2.238521 TGGTGGAAGAATCAAGGCAAC 58.761 47.619 0.00 0.00 0.00 4.17
4129 4340 4.948004 ACGATAGGCGATGAACCATATCTA 59.052 41.667 0.00 0.00 44.57 1.98
4849 5066 2.430694 GGTTGGCAAAGAACTGGAAAGT 59.569 45.455 0.00 0.00 0.00 2.66
5143 5360 0.679002 CTGACTCCAACATGGGGCAG 60.679 60.000 0.00 1.60 43.56 4.85
5209 5426 1.164041 AGTTGGGACGGTTCTTTGCG 61.164 55.000 0.00 0.00 0.00 4.85
5305 5522 2.689471 GCATGATTCCACAATGGCACTA 59.311 45.455 0.00 0.00 37.47 2.74
5660 5877 0.326264 GACTCCACAGGGCATGTTCT 59.674 55.000 0.14 0.00 41.41 3.01
6006 6223 4.705337 ACACGCTAAAGAAAACAAACCA 57.295 36.364 0.00 0.00 0.00 3.67
6088 6305 3.798202 CTCCAGGTACAGTTTATCCAGC 58.202 50.000 0.00 0.00 0.00 4.85
6188 6488 3.001330 CGTGAACAAAGAGAACACCAGAC 59.999 47.826 0.00 0.00 0.00 3.51
6209 6509 2.733552 CACTCAGATGTCACAGTTTCCG 59.266 50.000 0.00 0.00 0.00 4.30
6248 6548 5.410355 AATTTGTGCTTCCATGCATAACT 57.590 34.783 0.00 0.00 45.23 2.24
6251 6551 3.933955 GCAAATTTGTGCTTCCATGCATA 59.066 39.130 19.03 0.00 45.23 3.14
6348 6660 4.328169 GCATCTTTTGATTAGCCAAGCAAC 59.672 41.667 0.00 0.00 39.63 4.17
6398 6710 6.489361 GGTCAAATGATCAGCCATCTAATCTT 59.511 38.462 0.09 0.00 31.92 2.40
6473 6785 5.039645 TCAGGATGGAGGGAGTATTTCTTT 58.960 41.667 0.00 0.00 36.16 2.52
6474 6786 4.635473 TCAGGATGGAGGGAGTATTTCTT 58.365 43.478 0.00 0.00 36.16 2.52
6475 6787 4.286813 TCAGGATGGAGGGAGTATTTCT 57.713 45.455 0.00 0.00 36.16 2.52
6518 6830 9.869844 CAAAATAAGTGACTCAACTGAAGTTAG 57.130 33.333 0.00 0.00 36.32 2.34
6520 6832 7.201821 CCCAAAATAAGTGACTCAACTGAAGTT 60.202 37.037 0.00 0.00 39.12 2.66
6521 6833 6.263168 CCCAAAATAAGTGACTCAACTGAAGT 59.737 38.462 0.00 0.00 0.00 3.01
6522 6834 6.486657 TCCCAAAATAAGTGACTCAACTGAAG 59.513 38.462 0.00 0.00 0.00 3.02
6523 6835 6.262273 GTCCCAAAATAAGTGACTCAACTGAA 59.738 38.462 0.00 0.00 0.00 3.02
6524 6836 5.763204 GTCCCAAAATAAGTGACTCAACTGA 59.237 40.000 0.00 0.00 0.00 3.41
6525 6837 5.530915 TGTCCCAAAATAAGTGACTCAACTG 59.469 40.000 0.00 0.00 0.00 3.16
6526 6838 5.690865 TGTCCCAAAATAAGTGACTCAACT 58.309 37.500 0.00 0.00 0.00 3.16
6527 6839 5.763204 TCTGTCCCAAAATAAGTGACTCAAC 59.237 40.000 0.00 0.00 0.00 3.18
6528 6840 5.935945 TCTGTCCCAAAATAAGTGACTCAA 58.064 37.500 0.00 0.00 0.00 3.02
6529 6841 5.513094 CCTCTGTCCCAAAATAAGTGACTCA 60.513 44.000 0.00 0.00 0.00 3.41
6530 6842 4.938226 CCTCTGTCCCAAAATAAGTGACTC 59.062 45.833 0.00 0.00 0.00 3.36
6531 6843 4.263506 CCCTCTGTCCCAAAATAAGTGACT 60.264 45.833 0.00 0.00 0.00 3.41
6532 6844 4.010349 CCCTCTGTCCCAAAATAAGTGAC 58.990 47.826 0.00 0.00 0.00 3.67
6533 6845 3.913799 TCCCTCTGTCCCAAAATAAGTGA 59.086 43.478 0.00 0.00 0.00 3.41
6534 6846 4.263506 ACTCCCTCTGTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
6535 6847 3.916989 ACTCCCTCTGTCCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
6536 6848 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
6539 6851 3.852578 ACATACTCCCTCTGTCCCAAAAT 59.147 43.478 0.00 0.00 0.00 1.82
6541 6853 2.838202 GACATACTCCCTCTGTCCCAAA 59.162 50.000 0.00 0.00 34.55 3.28
6542 6854 2.225522 TGACATACTCCCTCTGTCCCAA 60.226 50.000 0.00 0.00 38.79 4.12
6543 6855 1.361197 TGACATACTCCCTCTGTCCCA 59.639 52.381 0.00 0.00 38.79 4.37
6544 6856 2.035632 CTGACATACTCCCTCTGTCCC 58.964 57.143 0.00 0.00 38.79 4.46
6545 6857 2.955660 CTCTGACATACTCCCTCTGTCC 59.044 54.545 0.00 0.00 38.79 4.02
6547 6859 3.748645 ACTCTGACATACTCCCTCTGT 57.251 47.619 0.00 0.00 0.00 3.41
6548 6860 4.787551 ACTACTCTGACATACTCCCTCTG 58.212 47.826 0.00 0.00 0.00 3.35
6550 6862 5.419471 ACAAACTACTCTGACATACTCCCTC 59.581 44.000 0.00 0.00 0.00 4.30
6551 6863 5.334421 ACAAACTACTCTGACATACTCCCT 58.666 41.667 0.00 0.00 0.00 4.20
6552 6864 5.662674 ACAAACTACTCTGACATACTCCC 57.337 43.478 0.00 0.00 0.00 4.30
6553 6865 8.053026 TCTTACAAACTACTCTGACATACTCC 57.947 38.462 0.00 0.00 0.00 3.85
6556 6868 9.909644 TTTCTCTTACAAACTACTCTGACATAC 57.090 33.333 0.00 0.00 0.00 2.39
6557 6869 9.909644 GTTTCTCTTACAAACTACTCTGACATA 57.090 33.333 0.00 0.00 32.01 2.29
6558 6870 8.421784 TGTTTCTCTTACAAACTACTCTGACAT 58.578 33.333 0.00 0.00 35.19 3.06
6559 6871 7.778083 TGTTTCTCTTACAAACTACTCTGACA 58.222 34.615 0.00 0.00 35.19 3.58
6560 6872 8.819643 ATGTTTCTCTTACAAACTACTCTGAC 57.180 34.615 0.00 0.00 35.19 3.51
6561 6873 8.861086 AGATGTTTCTCTTACAAACTACTCTGA 58.139 33.333 0.00 0.00 35.19 3.27
6562 6874 8.920665 CAGATGTTTCTCTTACAAACTACTCTG 58.079 37.037 0.00 0.00 35.19 3.35
6563 6875 7.600752 GCAGATGTTTCTCTTACAAACTACTCT 59.399 37.037 0.00 0.00 35.19 3.24
6598 6910 7.117523 GCTCAATCGCAATCAATCTCTAGTAAT 59.882 37.037 0.00 0.00 0.00 1.89
6604 6916 3.538591 TGCTCAATCGCAATCAATCTCT 58.461 40.909 0.00 0.00 36.89 3.10
6625 6937 3.366679 CCATTGACGCTCTTGCTGAAATT 60.367 43.478 0.00 0.00 36.97 1.82
6640 6952 5.290158 CAGTTAAATGCATTGCTCCATTGAC 59.710 40.000 13.82 2.34 32.40 3.18
6679 6991 4.814234 TGTCAAGAACAAGTAAGCGACATT 59.186 37.500 0.00 0.00 34.03 2.71
6687 6999 8.231692 TGGATTTTGATGTCAAGAACAAGTAA 57.768 30.769 0.00 0.00 42.37 2.24
6689 7001 6.713762 TGGATTTTGATGTCAAGAACAAGT 57.286 33.333 0.00 0.00 42.37 3.16
6692 7004 5.302568 AGCTTGGATTTTGATGTCAAGAACA 59.697 36.000 0.00 0.00 43.51 3.18
6696 7008 4.461781 AGGAGCTTGGATTTTGATGTCAAG 59.538 41.667 0.00 0.00 37.15 3.02
6736 7057 9.929180 CTCCTATGAAAATACGATCCTGAATAA 57.071 33.333 0.00 0.00 0.00 1.40
6737 7059 8.035394 GCTCCTATGAAAATACGATCCTGAATA 58.965 37.037 0.00 0.00 0.00 1.75
6741 7063 5.788450 AGCTCCTATGAAAATACGATCCTG 58.212 41.667 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.