Multiple sequence alignment - TraesCS1A01G091200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G091200 chr1A 100.000 5067 0 0 1 5067 82535245 82530179 0.000000e+00 9358.0
1 TraesCS1A01G091200 chr1A 90.441 136 11 2 2545 2678 324618840 324618705 1.450000e-40 178.0
2 TraesCS1A01G091200 chr1B 94.864 2570 74 16 1 2548 139675041 139672508 0.000000e+00 3962.0
3 TraesCS1A01G091200 chr1B 91.122 2174 96 32 2694 4804 139672508 139670369 0.000000e+00 2856.0
4 TraesCS1A01G091200 chr1B 91.632 239 17 2 4828 5065 626131062 626131298 1.360000e-85 327.0
5 TraesCS1A01G091200 chr1B 91.346 104 6 3 1509 1611 572529459 572529358 6.840000e-29 139.0
6 TraesCS1A01G091200 chr1D 91.539 2151 114 17 2693 4804 86927154 86925033 0.000000e+00 2902.0
7 TraesCS1A01G091200 chr1D 93.093 1578 62 19 1 1560 86929623 86928075 0.000000e+00 2266.0
8 TraesCS1A01G091200 chr1D 94.492 944 29 15 1606 2546 86928075 86927152 0.000000e+00 1434.0
9 TraesCS1A01G091200 chr1D 90.426 94 7 2 1519 1611 12312563 12312471 6.890000e-24 122.0
10 TraesCS1A01G091200 chr1D 89.216 102 6 4 1514 1611 322033514 322033414 6.890000e-24 122.0
11 TraesCS1A01G091200 chr1D 89.583 96 8 2 1516 1610 59879316 59879222 2.480000e-23 121.0
12 TraesCS1A01G091200 chr3A 92.437 238 16 1 4828 5065 11080310 11080075 6.280000e-89 339.0
13 TraesCS1A01G091200 chr7B 92.437 238 15 2 4828 5065 699819432 699819666 2.260000e-88 337.0
14 TraesCS1A01G091200 chr7B 91.667 240 17 2 4826 5065 34125829 34125593 3.780000e-86 329.0
15 TraesCS1A01G091200 chr7A 92.083 240 15 2 4828 5067 210815751 210815986 8.130000e-88 335.0
16 TraesCS1A01G091200 chr7A 85.821 134 18 1 2545 2678 719336336 719336204 1.900000e-29 141.0
17 TraesCS1A01G091200 chr7A 82.171 129 16 7 2529 2654 54720507 54720631 2.500000e-18 104.0
18 TraesCS1A01G091200 chr6B 91.667 240 17 2 4826 5065 577375984 577375748 3.780000e-86 329.0
19 TraesCS1A01G091200 chr6B 85.714 154 19 3 2527 2678 30306949 30307101 5.250000e-35 159.0
20 TraesCS1A01G091200 chr6B 86.131 137 17 2 2537 2672 172585435 172585300 4.090000e-31 147.0
21 TraesCS1A01G091200 chr2A 91.286 241 19 2 4828 5067 10220281 10220042 1.360000e-85 327.0
22 TraesCS1A01G091200 chr2A 91.111 135 11 1 2545 2678 161773051 161772917 1.120000e-41 182.0
23 TraesCS1A01G091200 chr5B 91.250 240 19 1 4828 5067 37505244 37505007 4.890000e-85 326.0
24 TraesCS1A01G091200 chr2B 90.612 245 19 3 4821 5065 790879169 790878929 6.330000e-84 322.0
25 TraesCS1A01G091200 chr2B 90.977 133 10 2 2542 2672 797329799 797329931 1.450000e-40 178.0
26 TraesCS1A01G091200 chr4A 90.780 141 7 5 2541 2678 37306862 37306999 3.120000e-42 183.0
27 TraesCS1A01G091200 chr4A 90.385 104 8 2 1508 1610 455925556 455925454 8.850000e-28 135.0
28 TraesCS1A01G091200 chr7D 91.111 135 11 1 2545 2678 382733805 382733671 1.120000e-41 182.0
29 TraesCS1A01G091200 chr4D 90.580 138 12 1 2542 2678 117421188 117421325 1.120000e-41 182.0
30 TraesCS1A01G091200 chr4D 88.276 145 14 3 2535 2678 21147902 21147760 2.430000e-38 171.0
31 TraesCS1A01G091200 chr4D 91.837 98 6 2 1516 1612 205963444 205963540 8.850000e-28 135.0
32 TraesCS1A01G091200 chr4D 83.108 148 23 2 2533 2678 82832687 82832834 3.180000e-27 134.0
33 TraesCS1A01G091200 chr4D 89.423 104 9 2 1508 1610 118247524 118247422 4.120000e-26 130.0
34 TraesCS1A01G091200 chr4D 90.722 97 7 2 1516 1611 110081029 110080934 1.480000e-25 128.0
35 TraesCS1A01G091200 chr4D 89.583 96 8 2 1516 1610 335044962 335044868 2.480000e-23 121.0
36 TraesCS1A01G091200 chr4D 87.736 106 9 4 1516 1619 387812492 387812389 2.480000e-23 121.0
37 TraesCS1A01G091200 chr4D 87.379 103 9 4 1516 1616 15316031 15316131 1.150000e-21 115.0
38 TraesCS1A01G091200 chr3B 90.000 140 12 2 2541 2679 212296331 212296469 4.030000e-41 180.0
39 TraesCS1A01G091200 chr3B 87.248 149 15 4 2532 2678 704132926 704132780 3.140000e-37 167.0
40 TraesCS1A01G091200 chr3B 87.826 115 8 5 1504 1615 448436383 448436494 4.120000e-26 130.0
41 TraesCS1A01G091200 chr6D 89.855 138 13 1 2545 2681 124663378 124663241 5.210000e-40 176.0
42 TraesCS1A01G091200 chr6D 88.889 108 9 3 1510 1615 401308368 401308262 4.120000e-26 130.0
43 TraesCS1A01G091200 chr6D 89.691 97 8 2 1516 1611 91559628 91559533 6.890000e-24 122.0
44 TraesCS1A01G091200 chr6D 89.000 100 9 2 1512 1610 238503011 238502913 6.890000e-24 122.0
45 TraesCS1A01G091200 chr6D 87.379 103 11 2 1510 1611 9063735 9063836 3.210000e-22 117.0
46 TraesCS1A01G091200 chr6D 87.255 102 10 3 1516 1615 98100061 98099961 4.150000e-21 113.0
47 TraesCS1A01G091200 chr6D 89.247 93 4 6 1518 1610 106978776 106978862 1.490000e-20 111.0
48 TraesCS1A01G091200 chr6D 87.000 100 11 2 1512 1610 155253606 155253508 1.490000e-20 111.0
49 TraesCS1A01G091200 chr6D 87.629 97 10 2 1516 1611 354905732 354905827 1.490000e-20 111.0
50 TraesCS1A01G091200 chr6D 87.000 100 10 3 1516 1613 65994318 65994416 5.360000e-20 110.0
51 TraesCS1A01G091200 chr5D 86.364 132 13 5 2527 2654 90002691 90002561 6.840000e-29 139.0
52 TraesCS1A01G091200 chr5D 91.753 97 6 2 1516 1611 65990585 65990490 3.180000e-27 134.0
53 TraesCS1A01G091200 chr5D 90.816 98 7 2 1516 1612 558970529 558970433 4.120000e-26 130.0
54 TraesCS1A01G091200 chr2D 85.816 141 8 7 2523 2655 611597146 611597010 6.840000e-29 139.0
55 TraesCS1A01G091200 chr4B 92.708 96 5 2 1516 1610 658515939 658516033 2.460000e-28 137.0
56 TraesCS1A01G091200 chr4B 90.291 103 8 2 1510 1611 664775614 664775715 3.180000e-27 134.0
57 TraesCS1A01G091200 chr3D 92.632 95 3 3 1516 1610 92122259 92122349 3.180000e-27 134.0
58 TraesCS1A01G091200 chr3D 91.753 97 6 2 1516 1611 138076242 138076337 3.180000e-27 134.0
59 TraesCS1A01G091200 chr5A 90.291 103 7 3 1516 1616 84159391 84159290 1.140000e-26 132.0
60 TraesCS1A01G091200 chr6A 84.921 126 15 4 2533 2655 11601407 11601531 1.920000e-24 124.0
61 TraesCS1A01G091200 chrUn 89.691 97 8 2 1516 1611 21636768 21636673 6.890000e-24 122.0
62 TraesCS1A01G091200 chrUn 86.813 91 10 2 1516 1605 302640047 302640136 3.230000e-17 100.0
63 TraesCS1A01G091200 chrUn 82.474 97 13 4 1516 1610 288726383 288726289 1.170000e-11 82.4
64 TraesCS1A01G091200 chrUn 80.412 97 17 2 1516 1611 328998722 328998817 7.040000e-09 73.1
65 TraesCS1A01G091200 chrUn 80.412 97 17 2 1516 1611 329057079 329056984 7.040000e-09 73.1
66 TraesCS1A01G091200 chrUn 89.474 57 3 3 1563 1617 86842378 86842323 9.100000e-08 69.4
67 TraesCS1A01G091200 chrUn 93.182 44 3 0 1569 1612 110336313 110336270 1.180000e-06 65.8
68 TraesCS1A01G091200 chrUn 100.000 31 0 0 1569 1599 215727676 215727646 1.970000e-04 58.4
69 TraesCS1A01G091200 chrUn 92.308 39 3 0 1572 1610 43172725 43172687 7.090000e-04 56.5
70 TraesCS1A01G091200 chrUn 92.308 39 3 0 1572 1610 178595790 178595752 7.090000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G091200 chr1A 82530179 82535245 5066 True 9358.000000 9358 100.000000 1 5067 1 chr1A.!!$R1 5066
1 TraesCS1A01G091200 chr1B 139670369 139675041 4672 True 3409.000000 3962 92.993000 1 4804 2 chr1B.!!$R2 4803
2 TraesCS1A01G091200 chr1D 86925033 86929623 4590 True 2200.666667 2902 93.041333 1 4804 3 chr1D.!!$R4 4803

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 298 0.110486 AGCCAGTCCCGAATGTTTGT 59.890 50.0 0.0 0.0 0.0 2.83 F
1140 1164 0.035439 GGGAATCGTTTGAGAGCCCA 60.035 55.0 0.0 0.0 38.1 5.36 F
2380 2411 0.037590 GACCAGGGCATACACCAACA 59.962 55.0 0.0 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 2072 0.107897 ACATGGACACACACACACGT 60.108 50.0 0.0 0.0 0.0 4.49 R
2679 2710 0.032017 ATGCTACTCCCTCCGTTCCT 60.032 55.0 0.0 0.0 0.0 3.36 R
4200 4259 0.247736 GTCGTGAGCATGAACCCTCT 59.752 55.0 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 1.666023 GCCTTTTTCCCTTTCGCTTCG 60.666 52.381 0.00 0.00 0.00 3.79
61 62 1.956297 TTTTCCCTTTCGCTTCGTGA 58.044 45.000 0.00 0.00 0.00 4.35
63 64 0.942410 TTCCCTTTCGCTTCGTGACG 60.942 55.000 0.00 0.00 0.00 4.35
102 103 2.233922 GGTCGAGGATTCAAGGTGAAGA 59.766 50.000 0.00 0.00 40.05 2.87
150 151 1.016653 GGTCTGCTCGCCTCTTGTTC 61.017 60.000 0.00 0.00 0.00 3.18
151 152 1.016653 GTCTGCTCGCCTCTTGTTCC 61.017 60.000 0.00 0.00 0.00 3.62
196 199 2.046700 TTCCCGCCGATGTGGTTC 60.047 61.111 0.00 0.00 40.77 3.62
262 265 1.817099 GCGCCTCTCCAGTTGGATG 60.817 63.158 0.00 0.00 44.46 3.51
273 276 3.452990 TCCAGTTGGATGCGATTAGGTTA 59.547 43.478 0.00 0.00 39.78 2.85
286 289 4.566987 GATTAGGTTATTAGCCAGTCCCG 58.433 47.826 0.00 0.00 0.00 5.14
295 298 0.110486 AGCCAGTCCCGAATGTTTGT 59.890 50.000 0.00 0.00 0.00 2.83
331 334 4.345859 TGCGTTCTCTTTCTTTTCCCTA 57.654 40.909 0.00 0.00 0.00 3.53
332 335 4.062991 TGCGTTCTCTTTCTTTTCCCTAC 58.937 43.478 0.00 0.00 0.00 3.18
333 336 3.123116 GCGTTCTCTTTCTTTTCCCTACG 59.877 47.826 0.00 0.00 0.00 3.51
423 428 3.581024 ACTGTGGCAGTGCATTAATTG 57.419 42.857 18.61 2.51 43.63 2.32
432 440 3.591196 GTGCATTAATTGGACAAGGCA 57.409 42.857 0.00 0.00 45.35 4.75
457 465 4.868067 CTGAATCAGCTGCTCTTGTTTTT 58.132 39.130 9.47 0.00 0.00 1.94
734 756 5.549742 AATCTGAGGCCTCTTCTTATCTG 57.450 43.478 32.28 9.40 0.00 2.90
862 884 0.179215 CATTTCTTCACGCCGCTGTC 60.179 55.000 0.00 0.00 0.00 3.51
863 885 0.602638 ATTTCTTCACGCCGCTGTCA 60.603 50.000 0.00 0.00 0.00 3.58
864 886 1.495584 TTTCTTCACGCCGCTGTCAC 61.496 55.000 0.00 0.00 0.00 3.67
865 887 3.414700 CTTCACGCCGCTGTCACC 61.415 66.667 0.00 0.00 0.00 4.02
921 943 3.686227 TTGGGGGTTGCTATGATGATT 57.314 42.857 0.00 0.00 0.00 2.57
981 1005 5.501156 AGTTTAGTGGGTCCATCTTTGATC 58.499 41.667 0.00 0.00 0.00 2.92
1128 1152 4.637091 ACGGTTACTTTTAATGGGGAATCG 59.363 41.667 0.00 0.00 0.00 3.34
1140 1164 0.035439 GGGAATCGTTTGAGAGCCCA 60.035 55.000 0.00 0.00 38.10 5.36
1218 1242 2.528127 TTGTCGAAGAGGGGGCCA 60.528 61.111 4.39 0.00 36.95 5.36
1280 1304 6.392911 TGATGCCCCTAGATATTGCTTATT 57.607 37.500 0.00 0.00 0.00 1.40
1335 1359 8.567948 TCCTTCACTTTAGCTGAAATAACAAAG 58.432 33.333 0.00 0.00 0.00 2.77
1353 1377 5.835257 ACAAAGATCACCTGTTGTTGATTG 58.165 37.500 0.00 0.00 30.11 2.67
1409 1433 7.639945 ACAAAGACAAATGAAACTGTAGCTAC 58.360 34.615 17.30 17.30 0.00 3.58
1476 1500 6.957631 TCATCCTTTATCTTAACCTTCTGCA 58.042 36.000 0.00 0.00 0.00 4.41
1535 1563 2.640184 CTCCCTCCGTCCCAAAATAAC 58.360 52.381 0.00 0.00 0.00 1.89
1579 1607 8.502105 ACTTTGTGCTAAAGTTGTACTAAAGT 57.498 30.769 12.07 0.00 37.18 2.66
1600 1628 5.690865 AGTTGAGACACTTATTTTGGGACA 58.309 37.500 0.00 0.00 0.00 4.02
1957 1987 0.899720 CCCATTTTCATGCCTGCTGT 59.100 50.000 0.00 0.00 0.00 4.40
2020 2050 6.349033 GGTTGTCATGTGGTATGTAGTTTTCC 60.349 42.308 0.00 0.00 0.00 3.13
2039 2070 4.055710 TCCACCCTTGTAGTACATCTCA 57.944 45.455 3.28 0.00 0.00 3.27
2041 2072 4.841813 TCCACCCTTGTAGTACATCTCAAA 59.158 41.667 3.28 0.00 0.00 2.69
2049 2080 4.979815 TGTAGTACATCTCAAACGTGTGTG 59.020 41.667 5.45 3.21 0.00 3.82
2050 2081 4.054780 AGTACATCTCAAACGTGTGTGT 57.945 40.909 5.45 5.68 0.00 3.72
2051 2082 3.802139 AGTACATCTCAAACGTGTGTGTG 59.198 43.478 5.45 7.13 34.39 3.82
2052 2083 2.627945 ACATCTCAAACGTGTGTGTGT 58.372 42.857 5.45 7.71 34.72 3.72
2053 2084 2.351418 ACATCTCAAACGTGTGTGTGTG 59.649 45.455 5.45 9.42 34.72 3.82
2054 2085 2.087501 TCTCAAACGTGTGTGTGTGT 57.912 45.000 5.45 0.00 34.72 3.72
2380 2411 0.037590 GACCAGGGCATACACCAACA 59.962 55.000 0.00 0.00 0.00 3.33
2553 2584 8.880991 TCTTACTATATGATTGTACTCCCTCC 57.119 38.462 0.00 0.00 0.00 4.30
2554 2585 7.610692 TCTTACTATATGATTGTACTCCCTCCG 59.389 40.741 0.00 0.00 0.00 4.63
2555 2586 5.642165 ACTATATGATTGTACTCCCTCCGT 58.358 41.667 0.00 0.00 0.00 4.69
2556 2587 6.075984 ACTATATGATTGTACTCCCTCCGTT 58.924 40.000 0.00 0.00 0.00 4.44
2557 2588 3.821421 ATGATTGTACTCCCTCCGTTC 57.179 47.619 0.00 0.00 0.00 3.95
2558 2589 1.829222 TGATTGTACTCCCTCCGTTCC 59.171 52.381 0.00 0.00 0.00 3.62
2559 2590 2.108970 GATTGTACTCCCTCCGTTCCT 58.891 52.381 0.00 0.00 0.00 3.36
2560 2591 2.905415 TTGTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
2561 2592 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2562 2593 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2563 2594 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2564 2595 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2565 2596 4.646492 TGTACTCCCTCCGTTCCTAAATAC 59.354 45.833 0.00 0.00 0.00 1.89
2566 2597 3.716431 ACTCCCTCCGTTCCTAAATACA 58.284 45.455 0.00 0.00 0.00 2.29
2567 2598 3.705072 ACTCCCTCCGTTCCTAAATACAG 59.295 47.826 0.00 0.00 0.00 2.74
2568 2599 3.705072 CTCCCTCCGTTCCTAAATACAGT 59.295 47.826 0.00 0.00 0.00 3.55
2569 2600 3.703052 TCCCTCCGTTCCTAAATACAGTC 59.297 47.826 0.00 0.00 0.00 3.51
2570 2601 3.705072 CCCTCCGTTCCTAAATACAGTCT 59.295 47.826 0.00 0.00 0.00 3.24
2571 2602 4.161754 CCCTCCGTTCCTAAATACAGTCTT 59.838 45.833 0.00 0.00 0.00 3.01
2572 2603 5.338137 CCCTCCGTTCCTAAATACAGTCTTT 60.338 44.000 0.00 0.00 0.00 2.52
2573 2604 6.171213 CCTCCGTTCCTAAATACAGTCTTTT 58.829 40.000 0.00 0.00 0.00 2.27
2574 2605 6.653740 CCTCCGTTCCTAAATACAGTCTTTTT 59.346 38.462 0.00 0.00 0.00 1.94
2575 2606 7.820872 CCTCCGTTCCTAAATACAGTCTTTTTA 59.179 37.037 0.00 0.00 0.00 1.52
2576 2607 8.767478 TCCGTTCCTAAATACAGTCTTTTTAG 57.233 34.615 0.00 0.00 34.30 1.85
2577 2608 8.587608 TCCGTTCCTAAATACAGTCTTTTTAGA 58.412 33.333 10.21 0.00 35.79 2.10
2578 2609 8.870879 CCGTTCCTAAATACAGTCTTTTTAGAG 58.129 37.037 10.21 4.09 35.79 2.43
2579 2610 9.635520 CGTTCCTAAATACAGTCTTTTTAGAGA 57.364 33.333 10.21 5.59 35.79 3.10
2594 2625 9.973661 TCTTTTTAGAGATTTCAATATGGACCA 57.026 29.630 0.00 0.00 0.00 4.02
2596 2627 9.527157 TTTTTAGAGATTTCAATATGGACCACA 57.473 29.630 0.00 0.00 0.00 4.17
2597 2628 9.699410 TTTTAGAGATTTCAATATGGACCACAT 57.301 29.630 0.00 0.00 43.68 3.21
2599 2630 9.778741 TTAGAGATTTCAATATGGACCACATAC 57.221 33.333 0.00 0.00 44.41 2.39
2600 2631 6.931281 AGAGATTTCAATATGGACCACATACG 59.069 38.462 0.00 0.00 44.41 3.06
2601 2632 6.591935 AGATTTCAATATGGACCACATACGT 58.408 36.000 0.00 0.00 44.41 3.57
2602 2633 7.732025 AGATTTCAATATGGACCACATACGTA 58.268 34.615 0.00 0.00 44.41 3.57
2603 2634 7.872993 AGATTTCAATATGGACCACATACGTAG 59.127 37.037 0.00 0.00 44.41 3.51
2604 2635 4.878439 TCAATATGGACCACATACGTAGC 58.122 43.478 0.00 0.00 44.41 3.58
2605 2636 4.342665 TCAATATGGACCACATACGTAGCA 59.657 41.667 0.00 0.00 44.41 3.49
2606 2637 4.948341 ATATGGACCACATACGTAGCAA 57.052 40.909 0.00 0.00 44.41 3.91
2607 2638 3.620427 ATGGACCACATACGTAGCAAA 57.380 42.857 0.00 0.00 38.26 3.68
2608 2639 3.404224 TGGACCACATACGTAGCAAAA 57.596 42.857 0.08 0.00 0.00 2.44
2609 2640 3.945346 TGGACCACATACGTAGCAAAAT 58.055 40.909 0.08 0.00 0.00 1.82
2610 2641 3.687212 TGGACCACATACGTAGCAAAATG 59.313 43.478 0.08 0.00 0.00 2.32
2611 2642 3.936453 GGACCACATACGTAGCAAAATGA 59.064 43.478 0.08 0.00 0.00 2.57
2612 2643 4.034048 GGACCACATACGTAGCAAAATGAG 59.966 45.833 0.08 0.00 0.00 2.90
2613 2644 4.575885 ACCACATACGTAGCAAAATGAGT 58.424 39.130 0.08 0.00 0.00 3.41
2614 2645 4.391830 ACCACATACGTAGCAAAATGAGTG 59.608 41.667 0.08 0.00 0.00 3.51
2615 2646 4.629634 CCACATACGTAGCAAAATGAGTGA 59.370 41.667 0.08 0.00 0.00 3.41
2616 2647 5.121611 CCACATACGTAGCAAAATGAGTGAA 59.878 40.000 0.08 0.00 0.00 3.18
2617 2648 6.015504 CACATACGTAGCAAAATGAGTGAAC 58.984 40.000 0.08 0.00 0.00 3.18
2618 2649 5.121768 ACATACGTAGCAAAATGAGTGAACC 59.878 40.000 0.08 0.00 0.00 3.62
2619 2650 3.740115 ACGTAGCAAAATGAGTGAACCT 58.260 40.909 0.00 0.00 0.00 3.50
2620 2651 4.890088 ACGTAGCAAAATGAGTGAACCTA 58.110 39.130 0.00 0.00 0.00 3.08
2621 2652 4.689345 ACGTAGCAAAATGAGTGAACCTAC 59.311 41.667 0.00 0.00 0.00 3.18
2622 2653 4.688879 CGTAGCAAAATGAGTGAACCTACA 59.311 41.667 0.00 0.00 0.00 2.74
2623 2654 5.389516 CGTAGCAAAATGAGTGAACCTACAC 60.390 44.000 0.00 0.00 40.60 2.90
2635 2666 7.224522 AGTGAACCTACACTCTAAAATACGT 57.775 36.000 0.00 0.00 46.36 3.57
2636 2667 7.311408 AGTGAACCTACACTCTAAAATACGTC 58.689 38.462 0.00 0.00 46.36 4.34
2637 2668 7.176340 AGTGAACCTACACTCTAAAATACGTCT 59.824 37.037 0.00 0.00 46.36 4.18
2638 2669 8.454106 GTGAACCTACACTCTAAAATACGTCTA 58.546 37.037 0.00 0.00 37.73 2.59
2639 2670 9.182214 TGAACCTACACTCTAAAATACGTCTAT 57.818 33.333 0.00 0.00 0.00 1.98
2685 2716 9.751542 ATACTGAAATCTCTACAAATAGGAACG 57.248 33.333 0.00 0.00 0.00 3.95
2686 2717 7.042335 ACTGAAATCTCTACAAATAGGAACGG 58.958 38.462 0.00 0.00 0.00 4.44
2687 2718 7.093465 ACTGAAATCTCTACAAATAGGAACGGA 60.093 37.037 0.00 0.00 0.00 4.69
2688 2719 7.265673 TGAAATCTCTACAAATAGGAACGGAG 58.734 38.462 0.00 0.00 0.00 4.63
2689 2720 5.793030 ATCTCTACAAATAGGAACGGAGG 57.207 43.478 0.00 0.00 0.00 4.30
2690 2721 3.958798 TCTCTACAAATAGGAACGGAGGG 59.041 47.826 0.00 0.00 0.00 4.30
2691 2722 3.958798 CTCTACAAATAGGAACGGAGGGA 59.041 47.826 0.00 0.00 0.00 4.20
2692 2723 3.958798 TCTACAAATAGGAACGGAGGGAG 59.041 47.826 0.00 0.00 0.00 4.30
2805 2838 5.302568 TCAGCTTGTTTCCTGACAATTCAAT 59.697 36.000 0.00 0.00 38.71 2.57
2857 2908 1.865970 GCAGCATCTTCATCTTCTCCG 59.134 52.381 0.00 0.00 0.00 4.63
3121 3172 0.747283 CACAGCAGAAGCCCCATCTC 60.747 60.000 0.00 0.00 43.56 2.75
3179 3230 0.811616 GCCACCAACTATGCTCTCCG 60.812 60.000 0.00 0.00 0.00 4.63
3347 3398 2.877786 CCAGTTACTGTGCACACAATGA 59.122 45.455 17.42 0.00 41.33 2.57
3381 3432 4.759782 CAAGGGTATACTGAGACAGTTGG 58.240 47.826 9.63 0.00 42.59 3.77
3464 3515 0.105964 TGTCGGTCCAAGTCAGGTTG 59.894 55.000 0.00 0.00 0.00 3.77
3475 3526 1.133513 AGTCAGGTTGAACAATGGCCA 60.134 47.619 8.56 8.56 0.00 5.36
3480 3531 2.629617 AGGTTGAACAATGGCCAGAAAG 59.370 45.455 13.05 3.02 0.00 2.62
3492 3543 1.539157 CCAGAAAGTGGGAAAGAGGC 58.461 55.000 0.00 0.00 43.63 4.70
3536 3587 4.099573 CCTCCGTGGAAGAGAATAAAGCTA 59.900 45.833 0.00 0.00 38.35 3.32
3812 3866 1.735920 GCGAGATATGGAGCTGCGG 60.736 63.158 0.00 0.00 0.00 5.69
3907 3961 0.179062 CTATCCCTGTGTGCTCAGCC 60.179 60.000 0.00 0.00 34.47 4.85
3919 3973 1.980232 CTCAGCCAGGCCAAATGCA 60.980 57.895 8.22 0.00 43.89 3.96
3925 3979 2.045708 CAGGCCAAATGCAGCGGTA 61.046 57.895 5.01 0.00 43.89 4.02
4124 4181 1.481363 GCTTTAGTTAGGGCTCGGACT 59.519 52.381 0.59 0.59 0.00 3.85
4146 4203 4.235079 TGGCAGTATATCAGTTTTGGCT 57.765 40.909 0.00 0.00 32.96 4.75
4151 4208 6.318900 GGCAGTATATCAGTTTTGGCTACTTT 59.681 38.462 0.00 0.00 0.00 2.66
4152 4209 7.148069 GGCAGTATATCAGTTTTGGCTACTTTT 60.148 37.037 0.00 0.00 0.00 2.27
4153 4210 7.698130 GCAGTATATCAGTTTTGGCTACTTTTG 59.302 37.037 0.00 0.00 0.00 2.44
4155 4212 8.947115 AGTATATCAGTTTTGGCTACTTTTGTC 58.053 33.333 0.00 0.00 0.00 3.18
4156 4213 7.759489 ATATCAGTTTTGGCTACTTTTGTCA 57.241 32.000 0.00 0.00 0.00 3.58
4158 4215 4.035017 CAGTTTTGGCTACTTTTGTCACG 58.965 43.478 0.00 0.00 0.00 4.35
4178 4237 8.959548 TGTCACGTTGGTATTTAGTTAGATAGA 58.040 33.333 0.00 0.00 0.00 1.98
4179 4238 9.962783 GTCACGTTGGTATTTAGTTAGATAGAT 57.037 33.333 0.00 0.00 0.00 1.98
4219 4278 0.247736 AGAGGGTTCATGCTCACGAC 59.752 55.000 0.00 0.00 0.00 4.34
4315 4375 2.032924 CGGAAGTTCCCTTGTGTGTTTC 59.967 50.000 16.47 0.00 31.13 2.78
4332 4392 7.933577 TGTGTGTTTCAGTTGAGATAAGAATCT 59.066 33.333 0.00 0.00 45.46 2.40
4333 4393 8.226448 GTGTGTTTCAGTTGAGATAAGAATCTG 58.774 37.037 0.00 0.00 42.73 2.90
4334 4394 7.933577 TGTGTTTCAGTTGAGATAAGAATCTGT 59.066 33.333 0.00 0.00 42.73 3.41
4335 4395 8.226448 GTGTTTCAGTTGAGATAAGAATCTGTG 58.774 37.037 0.00 0.00 42.73 3.66
4336 4396 7.933577 TGTTTCAGTTGAGATAAGAATCTGTGT 59.066 33.333 0.00 0.00 42.73 3.72
4337 4397 8.778358 GTTTCAGTTGAGATAAGAATCTGTGTT 58.222 33.333 0.00 0.00 42.73 3.32
4338 4398 8.908786 TTCAGTTGAGATAAGAATCTGTGTTT 57.091 30.769 0.00 0.00 42.73 2.83
4339 4399 8.539770 TCAGTTGAGATAAGAATCTGTGTTTC 57.460 34.615 0.00 0.00 42.73 2.78
4340 4400 8.150296 TCAGTTGAGATAAGAATCTGTGTTTCA 58.850 33.333 0.00 0.00 42.73 2.69
4341 4401 8.441608 CAGTTGAGATAAGAATCTGTGTTTCAG 58.558 37.037 0.00 0.00 42.73 3.02
4342 4402 8.153550 AGTTGAGATAAGAATCTGTGTTTCAGT 58.846 33.333 0.00 0.00 42.73 3.41
4343 4403 8.778358 GTTGAGATAAGAATCTGTGTTTCAGTT 58.222 33.333 0.00 0.00 42.73 3.16
4344 4404 8.315391 TGAGATAAGAATCTGTGTTTCAGTTG 57.685 34.615 0.00 0.00 42.73 3.16
4345 4405 8.150296 TGAGATAAGAATCTGTGTTTCAGTTGA 58.850 33.333 0.00 0.00 42.73 3.18
4346 4406 8.545229 AGATAAGAATCTGTGTTTCAGTTGAG 57.455 34.615 0.00 0.00 41.08 3.02
4347 4407 8.370940 AGATAAGAATCTGTGTTTCAGTTGAGA 58.629 33.333 0.00 0.00 41.08 3.27
4348 4408 9.160496 GATAAGAATCTGTGTTTCAGTTGAGAT 57.840 33.333 0.00 0.00 43.97 2.75
4350 4410 8.908786 AAGAATCTGTGTTTCAGTTGAGATAA 57.091 30.769 0.00 0.00 43.97 1.75
4351 4411 8.545229 AGAATCTGTGTTTCAGTTGAGATAAG 57.455 34.615 0.00 0.00 43.97 1.73
4352 4412 8.370940 AGAATCTGTGTTTCAGTTGAGATAAGA 58.629 33.333 0.00 0.00 43.97 2.10
4353 4413 8.908786 AATCTGTGTTTCAGTTGAGATAAGAA 57.091 30.769 0.00 0.00 43.97 2.52
4354 4414 9.512588 AATCTGTGTTTCAGTTGAGATAAGAAT 57.487 29.630 0.00 0.00 43.97 2.40
4355 4415 8.315391 TCTGTGTTTCAGTTGAGATAAGAATG 57.685 34.615 0.00 0.00 43.97 2.67
4362 4422 6.705302 TCAGTTGAGATAAGAATGAGCAGTT 58.295 36.000 0.00 0.00 0.00 3.16
4380 4440 0.328258 TTTAGTGGGAGGCTGCTTCC 59.672 55.000 21.47 21.47 0.00 3.46
4396 4456 3.923461 TGCTTCCGTTTGTTTTGTTCAAG 59.077 39.130 0.00 0.00 0.00 3.02
4400 4460 3.057174 TCCGTTTGTTTTGTTCAAGCTGT 60.057 39.130 0.00 0.00 0.00 4.40
4410 4470 7.439655 TGTTTTGTTCAAGCTGTTTAACACTTT 59.560 29.630 9.14 0.00 31.92 2.66
4421 4481 6.294286 GCTGTTTAACACTTTAGGCATGGTTA 60.294 38.462 0.00 0.00 0.00 2.85
4470 4530 4.382320 GTCGGGGCGTTACCTGCA 62.382 66.667 0.00 0.00 39.10 4.41
4475 4535 1.654023 GGGGCGTTACCTGCATGTTC 61.654 60.000 0.00 0.00 39.10 3.18
4486 4546 0.674581 TGCATGTTCTTCCAGCTCCG 60.675 55.000 0.00 0.00 0.00 4.63
4501 4562 3.566210 CCGGGGAGGTTGTGGTGT 61.566 66.667 0.00 0.00 34.51 4.16
4522 4583 4.603535 GTGCTTGGTGGTGGGGCT 62.604 66.667 0.00 0.00 0.00 5.19
4673 4752 1.088340 CCACTTGCATCTCGGCTCTG 61.088 60.000 0.00 0.00 34.04 3.35
4675 4754 2.124983 TTGCATCTCGGCTCTGGC 60.125 61.111 0.00 0.00 37.82 4.85
4706 4799 1.102978 GTGGGAACGCATGGCTATTT 58.897 50.000 0.00 0.00 41.67 1.40
4715 4808 0.670162 CATGGCTATTTTGGCTCGGG 59.330 55.000 0.00 0.00 0.00 5.14
4755 4848 1.467678 CCAATGCGGGGTTTGGTGAA 61.468 55.000 0.00 0.00 38.05 3.18
4769 4862 3.374042 TGGTGAACTCCAGGTGAAAAA 57.626 42.857 0.00 0.00 33.19 1.94
4770 4863 3.287222 TGGTGAACTCCAGGTGAAAAAG 58.713 45.455 0.00 0.00 33.19 2.27
4773 4866 3.945285 GTGAACTCCAGGTGAAAAAGTCA 59.055 43.478 0.00 0.00 0.00 3.41
4804 4897 0.450184 GTTAATGCCGGCGACAATGT 59.550 50.000 23.90 3.69 0.00 2.71
4805 4898 1.135517 GTTAATGCCGGCGACAATGTT 60.136 47.619 23.90 9.84 0.00 2.71
4806 4899 0.449786 TAATGCCGGCGACAATGTTG 59.550 50.000 23.90 0.00 0.00 3.33
4807 4900 2.817470 AATGCCGGCGACAATGTTGC 62.817 55.000 23.90 16.92 41.81 4.17
4814 4907 2.939460 GCGACAATGTTGCCCTTATT 57.061 45.000 14.47 0.00 36.99 1.40
4815 4908 2.529151 GCGACAATGTTGCCCTTATTG 58.471 47.619 14.47 0.00 36.99 1.90
4816 4909 2.735126 GCGACAATGTTGCCCTTATTGG 60.735 50.000 14.47 0.00 36.99 3.16
4817 4910 2.752354 CGACAATGTTGCCCTTATTGGA 59.248 45.455 0.00 0.00 36.41 3.53
4818 4911 3.181497 CGACAATGTTGCCCTTATTGGAG 60.181 47.826 0.00 0.00 36.41 3.86
4819 4912 3.099141 ACAATGTTGCCCTTATTGGAGG 58.901 45.455 0.00 0.00 36.41 4.30
4823 4916 4.657952 GCCCTTATTGGAGGCGTT 57.342 55.556 0.00 0.00 36.84 4.84
4824 4917 2.106844 GCCCTTATTGGAGGCGTTG 58.893 57.895 0.00 0.00 36.84 4.10
4825 4918 0.679960 GCCCTTATTGGAGGCGTTGT 60.680 55.000 0.00 0.00 36.84 3.32
4826 4919 1.379527 CCCTTATTGGAGGCGTTGTC 58.620 55.000 0.00 0.00 38.35 3.18
4827 4920 1.339631 CCCTTATTGGAGGCGTTGTCA 60.340 52.381 0.00 0.00 38.35 3.58
4828 4921 2.009774 CCTTATTGGAGGCGTTGTCAG 58.990 52.381 0.00 0.00 38.35 3.51
4829 4922 2.009774 CTTATTGGAGGCGTTGTCAGG 58.990 52.381 0.00 0.00 0.00 3.86
4830 4923 0.251916 TATTGGAGGCGTTGTCAGGG 59.748 55.000 0.00 0.00 0.00 4.45
4831 4924 3.723912 TATTGGAGGCGTTGTCAGGGC 62.724 57.143 0.00 0.00 0.00 5.19
4832 4925 4.329545 GGAGGCGTTGTCAGGGCA 62.330 66.667 3.03 0.00 35.83 5.36
4833 4926 2.045926 GAGGCGTTGTCAGGGCAT 60.046 61.111 3.03 0.00 35.83 4.40
4834 4927 2.045926 AGGCGTTGTCAGGGCATC 60.046 61.111 3.03 0.00 35.83 3.91
4835 4928 2.045926 GGCGTTGTCAGGGCATCT 60.046 61.111 0.00 0.00 33.62 2.90
4836 4929 1.675641 GGCGTTGTCAGGGCATCTT 60.676 57.895 0.00 0.00 33.62 2.40
4837 4930 1.648467 GGCGTTGTCAGGGCATCTTC 61.648 60.000 0.00 0.00 33.62 2.87
4838 4931 0.955428 GCGTTGTCAGGGCATCTTCA 60.955 55.000 0.00 0.00 0.00 3.02
4839 4932 1.081892 CGTTGTCAGGGCATCTTCAG 58.918 55.000 0.00 0.00 0.00 3.02
4840 4933 0.807496 GTTGTCAGGGCATCTTCAGC 59.193 55.000 0.00 0.00 0.00 4.26
4846 4939 3.190878 GGCATCTTCAGCCGTTGG 58.809 61.111 0.00 0.00 43.15 3.77
4856 4949 2.361104 GCCGTTGGCCCATCAAGA 60.361 61.111 0.00 0.00 44.06 3.02
4857 4950 2.409870 GCCGTTGGCCCATCAAGAG 61.410 63.158 0.00 0.00 44.06 2.85
4858 4951 1.750399 CCGTTGGCCCATCAAGAGG 60.750 63.158 0.00 0.00 0.00 3.69
4865 4958 3.379617 CCCATCAAGAGGGGCAAAA 57.620 52.632 6.89 0.00 46.30 2.44
4866 4959 1.643310 CCCATCAAGAGGGGCAAAAA 58.357 50.000 6.89 0.00 46.30 1.94
4908 5001 3.799755 GCTAAACCGCGCACTGGG 61.800 66.667 8.75 2.12 0.00 4.45
4946 5039 3.569690 CGGCGCCCACGGTTAATC 61.570 66.667 23.46 0.00 40.57 1.75
4947 5040 2.437002 GGCGCCCACGGTTAATCA 60.437 61.111 18.11 0.00 40.57 2.57
4948 5041 2.041686 GGCGCCCACGGTTAATCAA 61.042 57.895 18.11 0.00 40.57 2.57
4949 5042 1.587933 GGCGCCCACGGTTAATCAAA 61.588 55.000 18.11 0.00 40.57 2.69
4950 5043 0.241481 GCGCCCACGGTTAATCAAAA 59.759 50.000 0.00 0.00 40.57 2.44
4951 5044 1.336056 GCGCCCACGGTTAATCAAAAA 60.336 47.619 0.00 0.00 40.57 1.94
4973 5066 5.517037 AAAAATCAAAAACGACGCAAACA 57.483 30.435 0.00 0.00 0.00 2.83
4974 5067 5.710613 AAAATCAAAAACGACGCAAACAT 57.289 30.435 0.00 0.00 0.00 2.71
4975 5068 4.690731 AATCAAAAACGACGCAAACATG 57.309 36.364 0.00 0.00 0.00 3.21
4976 5069 3.406728 TCAAAAACGACGCAAACATGA 57.593 38.095 0.00 0.00 0.00 3.07
4977 5070 3.102276 TCAAAAACGACGCAAACATGAC 58.898 40.909 0.00 0.00 0.00 3.06
4978 5071 3.105203 CAAAAACGACGCAAACATGACT 58.895 40.909 0.00 0.00 0.00 3.41
4979 5072 2.663279 AAACGACGCAAACATGACTC 57.337 45.000 0.00 0.00 0.00 3.36
4980 5073 1.577468 AACGACGCAAACATGACTCA 58.423 45.000 0.00 0.00 0.00 3.41
4981 5074 1.577468 ACGACGCAAACATGACTCAA 58.423 45.000 0.00 0.00 0.00 3.02
4982 5075 1.937223 ACGACGCAAACATGACTCAAA 59.063 42.857 0.00 0.00 0.00 2.69
4983 5076 2.548057 ACGACGCAAACATGACTCAAAT 59.452 40.909 0.00 0.00 0.00 2.32
4984 5077 3.003275 ACGACGCAAACATGACTCAAATT 59.997 39.130 0.00 0.00 0.00 1.82
4985 5078 3.974401 CGACGCAAACATGACTCAAATTT 59.026 39.130 0.00 0.00 0.00 1.82
4986 5079 5.143660 CGACGCAAACATGACTCAAATTTA 58.856 37.500 0.00 0.00 0.00 1.40
4987 5080 5.623264 CGACGCAAACATGACTCAAATTTAA 59.377 36.000 0.00 0.00 0.00 1.52
4988 5081 6.397480 CGACGCAAACATGACTCAAATTTAAC 60.397 38.462 0.00 0.00 0.00 2.01
4989 5082 5.398122 ACGCAAACATGACTCAAATTTAACG 59.602 36.000 0.00 0.00 0.00 3.18
4990 5083 5.598783 GCAAACATGACTCAAATTTAACGC 58.401 37.500 0.00 0.00 0.00 4.84
4991 5084 5.174761 GCAAACATGACTCAAATTTAACGCA 59.825 36.000 0.00 0.00 0.00 5.24
4992 5085 6.292061 GCAAACATGACTCAAATTTAACGCAA 60.292 34.615 0.00 0.00 0.00 4.85
4993 5086 7.616673 CAAACATGACTCAAATTTAACGCAAA 58.383 30.769 0.00 0.00 0.00 3.68
4994 5087 7.945033 AACATGACTCAAATTTAACGCAAAT 57.055 28.000 0.00 0.00 38.54 2.32
4995 5088 9.469807 AAACATGACTCAAATTTAACGCAAATA 57.530 25.926 0.00 0.00 35.74 1.40
4996 5089 9.638239 AACATGACTCAAATTTAACGCAAATAT 57.362 25.926 0.00 0.00 35.74 1.28
4997 5090 9.289303 ACATGACTCAAATTTAACGCAAATATC 57.711 29.630 0.00 0.00 35.74 1.63
4998 5091 7.946918 TGACTCAAATTTAACGCAAATATCG 57.053 32.000 0.00 0.00 35.74 2.92
4999 5092 6.964370 TGACTCAAATTTAACGCAAATATCGG 59.036 34.615 0.00 0.00 35.74 4.18
5000 5093 5.741982 ACTCAAATTTAACGCAAATATCGGC 59.258 36.000 0.00 0.00 35.74 5.54
5007 5100 3.710233 GCAAATATCGGCGAGTTCG 57.290 52.632 17.22 3.49 43.27 3.95
5008 5101 0.928229 GCAAATATCGGCGAGTTCGT 59.072 50.000 17.22 0.00 42.22 3.85
5009 5102 1.326548 GCAAATATCGGCGAGTTCGTT 59.673 47.619 17.22 0.00 42.22 3.85
5010 5103 2.596807 GCAAATATCGGCGAGTTCGTTC 60.597 50.000 17.22 0.00 42.22 3.95
5011 5104 2.572191 AATATCGGCGAGTTCGTTCA 57.428 45.000 17.22 0.00 42.22 3.18
5012 5105 2.572191 ATATCGGCGAGTTCGTTCAA 57.428 45.000 17.22 0.00 42.22 2.69
5013 5106 2.350899 TATCGGCGAGTTCGTTCAAA 57.649 45.000 17.22 0.00 42.22 2.69
5014 5107 0.788391 ATCGGCGAGTTCGTTCAAAC 59.212 50.000 17.22 0.00 42.22 2.93
5015 5108 0.249155 TCGGCGAGTTCGTTCAAACT 60.249 50.000 4.99 0.00 42.10 2.66
5016 5109 0.580104 CGGCGAGTTCGTTCAAACTT 59.420 50.000 0.00 0.00 39.55 2.66
5017 5110 1.788308 CGGCGAGTTCGTTCAAACTTA 59.212 47.619 0.00 0.00 39.55 2.24
5018 5111 2.219216 CGGCGAGTTCGTTCAAACTTAA 59.781 45.455 0.00 0.00 39.55 1.85
5019 5112 3.302610 CGGCGAGTTCGTTCAAACTTAAA 60.303 43.478 0.00 0.00 39.55 1.52
5020 5113 3.964347 GGCGAGTTCGTTCAAACTTAAAC 59.036 43.478 3.27 0.00 39.55 2.01
5021 5114 4.494526 GGCGAGTTCGTTCAAACTTAAACA 60.495 41.667 3.27 0.00 39.55 2.83
5022 5115 5.202640 GCGAGTTCGTTCAAACTTAAACAT 58.797 37.500 3.27 0.00 39.55 2.71
5023 5116 6.357198 GCGAGTTCGTTCAAACTTAAACATA 58.643 36.000 3.27 0.00 39.55 2.29
5024 5117 7.013529 GCGAGTTCGTTCAAACTTAAACATAT 58.986 34.615 3.27 0.00 39.55 1.78
5025 5118 7.532884 GCGAGTTCGTTCAAACTTAAACATATT 59.467 33.333 3.27 0.00 39.55 1.28
5026 5119 9.377383 CGAGTTCGTTCAAACTTAAACATATTT 57.623 29.630 0.00 0.00 39.55 1.40
5061 5154 2.845019 AAAAACTACCGCGGGCTAC 58.155 52.632 31.76 0.00 0.00 3.58
5062 5155 0.674581 AAAAACTACCGCGGGCTACC 60.675 55.000 31.76 0.00 0.00 3.18
5063 5156 2.526450 AAAACTACCGCGGGCTACCC 62.526 60.000 31.76 0.00 41.09 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 3.047877 CCCTTCCAACCGCGTCAC 61.048 66.667 4.92 0.00 0.00 3.67
61 62 2.920912 TCTCCCTTCCAACCGCGT 60.921 61.111 4.92 0.00 0.00 6.01
63 64 2.269241 CCTCTCCCTTCCAACCGC 59.731 66.667 0.00 0.00 0.00 5.68
102 103 2.672295 AGAGACCGCCGACTCTCT 59.328 61.111 8.08 8.08 38.90 3.10
140 141 2.361737 GCCCCAGGAACAAGAGGC 60.362 66.667 0.00 0.00 0.00 4.70
141 142 0.610232 CAAGCCCCAGGAACAAGAGG 60.610 60.000 0.00 0.00 0.00 3.69
150 151 1.452108 GATCGAACCAAGCCCCAGG 60.452 63.158 0.00 0.00 0.00 4.45
151 152 0.745845 CAGATCGAACCAAGCCCCAG 60.746 60.000 0.00 0.00 0.00 4.45
255 258 5.106673 GGCTAATAACCTAATCGCATCCAAC 60.107 44.000 0.00 0.00 0.00 3.77
262 265 3.995048 GGACTGGCTAATAACCTAATCGC 59.005 47.826 0.00 0.00 0.00 4.58
273 276 3.016736 CAAACATTCGGGACTGGCTAAT 58.983 45.455 0.00 0.00 0.00 1.73
331 334 3.321111 ACCTCTGATTAACTGACACACGT 59.679 43.478 0.00 0.00 0.00 4.49
332 335 3.914312 ACCTCTGATTAACTGACACACG 58.086 45.455 0.00 0.00 0.00 4.49
333 336 5.992217 AGAAACCTCTGATTAACTGACACAC 59.008 40.000 0.00 0.00 0.00 3.82
423 428 1.471684 CTGATTCAGCTTGCCTTGTCC 59.528 52.381 0.00 0.00 0.00 4.02
457 465 5.743636 AGCAGCTGATTCCCAATTAAAAA 57.256 34.783 20.43 0.00 0.00 1.94
462 470 4.284178 ACAATAGCAGCTGATTCCCAATT 58.716 39.130 20.43 4.27 0.00 2.32
463 471 3.907221 ACAATAGCAGCTGATTCCCAAT 58.093 40.909 20.43 0.00 0.00 3.16
734 756 1.246056 TGATGCCCTCTTGTTGCAGC 61.246 55.000 0.00 0.00 41.51 5.25
791 813 5.491070 AGCAGTGTATGAAGCTATGTTCAA 58.509 37.500 0.00 0.00 39.84 2.69
862 884 3.300009 GAGAAAACATTGAACAGCGGTG 58.700 45.455 14.13 14.13 0.00 4.94
863 885 2.293399 GGAGAAAACATTGAACAGCGGT 59.707 45.455 0.00 0.00 0.00 5.68
864 886 2.293122 TGGAGAAAACATTGAACAGCGG 59.707 45.455 0.00 0.00 0.00 5.52
865 887 3.624326 TGGAGAAAACATTGAACAGCG 57.376 42.857 0.00 0.00 0.00 5.18
866 888 6.849588 AATTTGGAGAAAACATTGAACAGC 57.150 33.333 0.00 0.00 0.00 4.40
867 889 8.881743 TGAAAATTTGGAGAAAACATTGAACAG 58.118 29.630 0.00 0.00 0.00 3.16
868 890 8.783833 TGAAAATTTGGAGAAAACATTGAACA 57.216 26.923 0.00 0.00 0.00 3.18
902 924 3.686227 AAATCATCATAGCAACCCCCA 57.314 42.857 0.00 0.00 0.00 4.96
921 943 0.555769 AGGCTCAAGGGGTGACAAAA 59.444 50.000 0.00 0.00 31.13 2.44
981 1005 1.751927 GCCTGCATCCACCTCAAGG 60.752 63.158 0.00 0.00 42.17 3.61
1128 1152 0.402121 AGAACCCTGGGCTCTCAAAC 59.598 55.000 12.95 0.00 0.00 2.93
1280 1304 3.448093 TCCAATGTTAATGTGGCCAGA 57.552 42.857 5.11 4.74 32.10 3.86
1335 1359 2.094545 GGGCAATCAACAACAGGTGATC 60.095 50.000 0.00 0.00 0.00 2.92
1353 1377 5.375417 AAATAAGCTGCAAAAATTTGGGC 57.625 34.783 1.02 7.24 38.57 5.36
1396 1420 8.015409 AGTATTTGAAACGTAGCTACAGTTTC 57.985 34.615 35.72 35.72 42.67 2.78
1409 1433 9.767684 TCACTTGCATATTAAGTATTTGAAACG 57.232 29.630 0.00 0.00 36.29 3.60
1476 1500 8.206189 TGAAGGAAAGAATTGAAGAGCATTTTT 58.794 29.630 0.00 0.00 0.00 1.94
1579 1607 5.935945 TCTGTCCCAAAATAAGTGTCTCAA 58.064 37.500 0.00 0.00 0.00 3.02
1600 1628 5.426833 ACAGCACATTAAGAATACTCCCTCT 59.573 40.000 0.00 0.00 0.00 3.69
1775 1805 6.209788 GGAAGTATCTTAGGTAGATCCACAGG 59.790 46.154 0.00 0.00 42.69 4.00
1823 1853 5.880332 GCAGTGGGAATTATCAAGAACAGTA 59.120 40.000 0.00 0.00 0.00 2.74
1957 1987 8.001881 TCTACTTGGATTTGTTTTTACTGCAA 57.998 30.769 0.00 0.00 0.00 4.08
2020 2050 4.625742 CGTTTGAGATGTACTACAAGGGTG 59.374 45.833 0.00 0.00 0.00 4.61
2039 2070 1.400142 CATGGACACACACACACGTTT 59.600 47.619 0.00 0.00 0.00 3.60
2041 2072 0.107897 ACATGGACACACACACACGT 60.108 50.000 0.00 0.00 0.00 4.49
2049 2080 6.252967 TGACATTAATGAACATGGACACAC 57.747 37.500 22.16 0.00 0.00 3.82
2050 2081 6.885918 AGATGACATTAATGAACATGGACACA 59.114 34.615 25.01 10.97 32.42 3.72
2051 2082 7.325660 AGATGACATTAATGAACATGGACAC 57.674 36.000 25.01 15.83 32.42 3.67
2052 2083 8.485392 TCTAGATGACATTAATGAACATGGACA 58.515 33.333 25.01 12.72 32.42 4.02
2053 2084 8.893219 TCTAGATGACATTAATGAACATGGAC 57.107 34.615 25.01 16.28 32.42 4.02
2175 2206 5.240623 CCACAGTTGCAGTATAAACCAGAAA 59.759 40.000 0.00 0.00 0.00 2.52
2380 2411 3.746045 AACTCCACTGTACACGTGAAT 57.254 42.857 25.01 2.62 34.35 2.57
2547 2578 3.703052 GACTGTATTTAGGAACGGAGGGA 59.297 47.826 0.00 0.00 0.00 4.20
2548 2579 3.705072 AGACTGTATTTAGGAACGGAGGG 59.295 47.826 0.00 0.00 0.00 4.30
2549 2580 5.340439 AAGACTGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2550 2581 7.668525 AAAAAGACTGTATTTAGGAACGGAG 57.331 36.000 0.27 0.00 0.00 4.63
2551 2582 8.587608 TCTAAAAAGACTGTATTTAGGAACGGA 58.412 33.333 0.27 0.00 37.29 4.69
2552 2583 8.767478 TCTAAAAAGACTGTATTTAGGAACGG 57.233 34.615 0.27 0.00 37.29 4.44
2553 2584 9.635520 TCTCTAAAAAGACTGTATTTAGGAACG 57.364 33.333 0.27 0.00 37.29 3.95
2568 2599 9.973661 TGGTCCATATTGAAATCTCTAAAAAGA 57.026 29.630 0.00 0.00 0.00 2.52
2570 2601 9.527157 TGTGGTCCATATTGAAATCTCTAAAAA 57.473 29.630 0.00 0.00 0.00 1.94
2571 2602 9.699410 ATGTGGTCCATATTGAAATCTCTAAAA 57.301 29.630 0.00 0.00 29.82 1.52
2573 2604 9.778741 GTATGTGGTCCATATTGAAATCTCTAA 57.221 33.333 6.41 0.00 38.29 2.10
2574 2605 8.088365 CGTATGTGGTCCATATTGAAATCTCTA 58.912 37.037 6.41 0.00 38.29 2.43
2575 2606 6.931281 CGTATGTGGTCCATATTGAAATCTCT 59.069 38.462 6.41 0.00 38.29 3.10
2576 2607 6.706270 ACGTATGTGGTCCATATTGAAATCTC 59.294 38.462 6.41 0.00 38.29 2.75
2577 2608 6.591935 ACGTATGTGGTCCATATTGAAATCT 58.408 36.000 6.41 0.00 38.29 2.40
2578 2609 6.861065 ACGTATGTGGTCCATATTGAAATC 57.139 37.500 6.41 0.00 38.29 2.17
2579 2610 6.426937 GCTACGTATGTGGTCCATATTGAAAT 59.573 38.462 6.41 0.00 38.29 2.17
2580 2611 5.756347 GCTACGTATGTGGTCCATATTGAAA 59.244 40.000 6.41 0.00 38.29 2.69
2581 2612 5.163395 TGCTACGTATGTGGTCCATATTGAA 60.163 40.000 6.41 0.00 38.29 2.69
2582 2613 4.342665 TGCTACGTATGTGGTCCATATTGA 59.657 41.667 6.41 0.00 38.29 2.57
2583 2614 4.627058 TGCTACGTATGTGGTCCATATTG 58.373 43.478 6.41 3.07 38.29 1.90
2584 2615 4.948341 TGCTACGTATGTGGTCCATATT 57.052 40.909 6.41 0.00 38.29 1.28
2585 2616 4.948341 TTGCTACGTATGTGGTCCATAT 57.052 40.909 6.35 6.35 38.29 1.78
2586 2617 4.739587 TTTGCTACGTATGTGGTCCATA 57.260 40.909 0.00 0.00 34.86 2.74
2587 2618 3.620427 TTTGCTACGTATGTGGTCCAT 57.380 42.857 0.00 0.00 37.58 3.41
2588 2619 3.404224 TTTTGCTACGTATGTGGTCCA 57.596 42.857 0.00 0.00 0.00 4.02
2589 2620 3.936453 TCATTTTGCTACGTATGTGGTCC 59.064 43.478 0.00 0.00 0.00 4.46
2590 2621 4.630069 ACTCATTTTGCTACGTATGTGGTC 59.370 41.667 0.00 0.00 0.00 4.02
2591 2622 4.391830 CACTCATTTTGCTACGTATGTGGT 59.608 41.667 0.00 0.00 0.00 4.16
2592 2623 4.629634 TCACTCATTTTGCTACGTATGTGG 59.370 41.667 0.00 0.00 0.00 4.17
2593 2624 5.778161 TCACTCATTTTGCTACGTATGTG 57.222 39.130 0.00 0.00 0.00 3.21
2594 2625 5.121768 GGTTCACTCATTTTGCTACGTATGT 59.878 40.000 0.00 0.00 0.00 2.29
2595 2626 5.351465 AGGTTCACTCATTTTGCTACGTATG 59.649 40.000 0.00 0.00 0.00 2.39
2596 2627 5.488341 AGGTTCACTCATTTTGCTACGTAT 58.512 37.500 0.00 0.00 0.00 3.06
2597 2628 4.890088 AGGTTCACTCATTTTGCTACGTA 58.110 39.130 0.00 0.00 0.00 3.57
2598 2629 3.740115 AGGTTCACTCATTTTGCTACGT 58.260 40.909 0.00 0.00 0.00 3.57
2599 2630 4.688879 TGTAGGTTCACTCATTTTGCTACG 59.311 41.667 0.00 0.00 0.00 3.51
2600 2631 5.701290 AGTGTAGGTTCACTCATTTTGCTAC 59.299 40.000 0.00 0.00 44.07 3.58
2601 2632 5.865085 AGTGTAGGTTCACTCATTTTGCTA 58.135 37.500 0.00 0.00 44.07 3.49
2602 2633 4.718961 AGTGTAGGTTCACTCATTTTGCT 58.281 39.130 0.00 0.00 44.07 3.91
2612 2643 7.311408 AGACGTATTTTAGAGTGTAGGTTCAC 58.689 38.462 0.00 0.00 38.46 3.18
2613 2644 7.458409 AGACGTATTTTAGAGTGTAGGTTCA 57.542 36.000 0.00 0.00 0.00 3.18
2659 2690 9.751542 CGTTCCTATTTGTAGAGATTTCAGTAT 57.248 33.333 0.00 0.00 0.00 2.12
2660 2691 8.195436 CCGTTCCTATTTGTAGAGATTTCAGTA 58.805 37.037 0.00 0.00 0.00 2.74
2661 2692 7.042335 CCGTTCCTATTTGTAGAGATTTCAGT 58.958 38.462 0.00 0.00 0.00 3.41
2662 2693 7.265673 TCCGTTCCTATTTGTAGAGATTTCAG 58.734 38.462 0.00 0.00 0.00 3.02
2663 2694 7.177832 TCCGTTCCTATTTGTAGAGATTTCA 57.822 36.000 0.00 0.00 0.00 2.69
2664 2695 6.702282 CCTCCGTTCCTATTTGTAGAGATTTC 59.298 42.308 0.00 0.00 0.00 2.17
2665 2696 6.408206 CCCTCCGTTCCTATTTGTAGAGATTT 60.408 42.308 0.00 0.00 0.00 2.17
2666 2697 5.070580 CCCTCCGTTCCTATTTGTAGAGATT 59.929 44.000 0.00 0.00 0.00 2.40
2667 2698 4.589374 CCCTCCGTTCCTATTTGTAGAGAT 59.411 45.833 0.00 0.00 0.00 2.75
2668 2699 3.958798 CCCTCCGTTCCTATTTGTAGAGA 59.041 47.826 0.00 0.00 0.00 3.10
2669 2700 3.958798 TCCCTCCGTTCCTATTTGTAGAG 59.041 47.826 0.00 0.00 0.00 2.43
2670 2701 3.958798 CTCCCTCCGTTCCTATTTGTAGA 59.041 47.826 0.00 0.00 0.00 2.59
2671 2702 3.705072 ACTCCCTCCGTTCCTATTTGTAG 59.295 47.826 0.00 0.00 0.00 2.74
2672 2703 3.716431 ACTCCCTCCGTTCCTATTTGTA 58.284 45.455 0.00 0.00 0.00 2.41
2673 2704 2.547990 ACTCCCTCCGTTCCTATTTGT 58.452 47.619 0.00 0.00 0.00 2.83
2674 2705 3.492829 GCTACTCCCTCCGTTCCTATTTG 60.493 52.174 0.00 0.00 0.00 2.32
2675 2706 2.699321 GCTACTCCCTCCGTTCCTATTT 59.301 50.000 0.00 0.00 0.00 1.40
2676 2707 2.317973 GCTACTCCCTCCGTTCCTATT 58.682 52.381 0.00 0.00 0.00 1.73
2677 2708 1.217183 TGCTACTCCCTCCGTTCCTAT 59.783 52.381 0.00 0.00 0.00 2.57
2678 2709 0.627451 TGCTACTCCCTCCGTTCCTA 59.373 55.000 0.00 0.00 0.00 2.94
2679 2710 0.032017 ATGCTACTCCCTCCGTTCCT 60.032 55.000 0.00 0.00 0.00 3.36
2680 2711 1.700955 TATGCTACTCCCTCCGTTCC 58.299 55.000 0.00 0.00 0.00 3.62
2681 2712 3.057174 CAGATATGCTACTCCCTCCGTTC 60.057 52.174 0.00 0.00 0.00 3.95
2682 2713 2.894126 CAGATATGCTACTCCCTCCGTT 59.106 50.000 0.00 0.00 0.00 4.44
2683 2714 2.520069 CAGATATGCTACTCCCTCCGT 58.480 52.381 0.00 0.00 0.00 4.69
2684 2715 1.203523 GCAGATATGCTACTCCCTCCG 59.796 57.143 4.74 0.00 0.00 4.63
2685 2716 2.534990 AGCAGATATGCTACTCCCTCC 58.465 52.381 14.39 0.00 44.28 4.30
2686 2717 4.340617 ACTAGCAGATATGCTACTCCCTC 58.659 47.826 17.87 0.00 44.28 4.30
2687 2718 4.396357 ACTAGCAGATATGCTACTCCCT 57.604 45.455 17.87 0.00 44.28 4.20
2688 2719 4.524714 TCAACTAGCAGATATGCTACTCCC 59.475 45.833 17.87 0.00 44.28 4.30
2689 2720 5.713792 TCAACTAGCAGATATGCTACTCC 57.286 43.478 17.87 0.00 44.28 3.85
2690 2721 5.576384 GCATCAACTAGCAGATATGCTACTC 59.424 44.000 17.87 0.00 44.28 2.59
2691 2722 5.011431 TGCATCAACTAGCAGATATGCTACT 59.989 40.000 17.87 6.81 44.28 2.57
2692 2723 5.233225 TGCATCAACTAGCAGATATGCTAC 58.767 41.667 17.87 7.35 44.28 3.58
2857 2908 0.318275 GCTCCTCGTCATGATCGGAC 60.318 60.000 14.72 7.15 0.00 4.79
3121 3172 1.597742 CCATAGCTTGAACCATCGGG 58.402 55.000 0.00 0.00 41.29 5.14
3179 3230 1.287146 TCTAGGTGGAGGAGGGTACAC 59.713 57.143 0.00 0.00 0.00 2.90
3347 3398 1.154430 TACCCTTGCCTTTCCCTGTT 58.846 50.000 0.00 0.00 0.00 3.16
3464 3515 1.273327 CCCACTTTCTGGCCATTGTTC 59.727 52.381 5.51 0.00 39.01 3.18
3475 3526 0.765510 ACGCCTCTTTCCCACTTTCT 59.234 50.000 0.00 0.00 0.00 2.52
3480 3531 2.429610 TCTGTATACGCCTCTTTCCCAC 59.570 50.000 0.00 0.00 0.00 4.61
3492 3543 3.304123 GGCAGCACTACTCTCTGTATACG 60.304 52.174 0.00 0.00 0.00 3.06
3536 3587 0.315568 GTGGAGCTTGACGTCTGAGT 59.684 55.000 17.92 5.86 0.00 3.41
3775 3829 1.022735 CTGGAGCTTGCATGTCCATC 58.977 55.000 17.86 6.21 39.66 3.51
3776 3830 1.035932 GCTGGAGCTTGCATGTCCAT 61.036 55.000 17.86 0.00 39.66 3.41
3812 3866 4.414337 AACCTGATGAACTCATAGGAGC 57.586 45.455 3.87 0.00 45.42 4.70
3874 3928 3.025262 AGGGATAGAAGTTCGGACTGTC 58.975 50.000 0.00 0.00 35.91 3.51
3907 3961 1.594194 TTACCGCTGCATTTGGCCTG 61.594 55.000 3.32 0.00 43.89 4.85
3919 3973 0.824759 CAGGGCTAGAGTTTACCGCT 59.175 55.000 0.00 0.00 0.00 5.52
3925 3979 0.908198 CTGCTCCAGGGCTAGAGTTT 59.092 55.000 0.00 0.00 32.47 2.66
3955 4012 1.078848 GATCTGAACAGCAGGCCGT 60.079 57.895 0.00 0.00 44.98 5.68
4077 4134 5.049129 GCTATTGTTCTCTCAACTTGCTGTT 60.049 40.000 0.00 0.00 39.92 3.16
4088 4145 5.344884 ACTAAAGCTCGCTATTGTTCTCTC 58.655 41.667 0.00 0.00 0.00 3.20
4089 4146 5.331876 ACTAAAGCTCGCTATTGTTCTCT 57.668 39.130 0.00 0.00 0.00 3.10
4097 4154 2.966516 AGCCCTAACTAAAGCTCGCTAT 59.033 45.455 0.00 0.00 0.00 2.97
4124 4181 4.599041 AGCCAAAACTGATATACTGCCAA 58.401 39.130 0.00 0.00 0.00 4.52
4146 4203 8.436046 AACTAAATACCAACGTGACAAAAGTA 57.564 30.769 0.00 0.00 0.00 2.24
4151 4208 9.577110 CTATCTAACTAAATACCAACGTGACAA 57.423 33.333 0.00 0.00 0.00 3.18
4152 4209 8.959548 TCTATCTAACTAAATACCAACGTGACA 58.040 33.333 0.00 0.00 0.00 3.58
4153 4210 9.962783 ATCTATCTAACTAAATACCAACGTGAC 57.037 33.333 0.00 0.00 0.00 3.67
4178 4237 9.454859 CCTCTCCAACTCTTTATAAAGTTCAAT 57.545 33.333 21.69 5.77 37.31 2.57
4179 4238 7.883311 CCCTCTCCAACTCTTTATAAAGTTCAA 59.117 37.037 21.69 4.92 37.31 2.69
4200 4259 0.247736 GTCGTGAGCATGAACCCTCT 59.752 55.000 0.00 0.00 0.00 3.69
4219 4278 3.612247 CTCCGAACAGGCCTGGTGG 62.612 68.421 35.42 30.25 40.77 4.61
4315 4375 8.315391 TGAAACACAGATTCTTATCTCAACTG 57.685 34.615 0.00 0.00 39.11 3.16
4332 4392 7.095060 GCTCATTCTTATCTCAACTGAAACACA 60.095 37.037 0.00 0.00 0.00 3.72
4333 4393 7.095060 TGCTCATTCTTATCTCAACTGAAACAC 60.095 37.037 0.00 0.00 0.00 3.32
4334 4394 6.936335 TGCTCATTCTTATCTCAACTGAAACA 59.064 34.615 0.00 0.00 0.00 2.83
4335 4395 7.118971 ACTGCTCATTCTTATCTCAACTGAAAC 59.881 37.037 0.00 0.00 0.00 2.78
4336 4396 7.164122 ACTGCTCATTCTTATCTCAACTGAAA 58.836 34.615 0.00 0.00 0.00 2.69
4337 4397 6.705302 ACTGCTCATTCTTATCTCAACTGAA 58.295 36.000 0.00 0.00 0.00 3.02
4338 4398 6.291648 ACTGCTCATTCTTATCTCAACTGA 57.708 37.500 0.00 0.00 0.00 3.41
4339 4399 6.981762 AACTGCTCATTCTTATCTCAACTG 57.018 37.500 0.00 0.00 0.00 3.16
4340 4400 8.317679 ACTAAACTGCTCATTCTTATCTCAACT 58.682 33.333 0.00 0.00 0.00 3.16
4341 4401 8.386606 CACTAAACTGCTCATTCTTATCTCAAC 58.613 37.037 0.00 0.00 0.00 3.18
4342 4402 7.550551 CCACTAAACTGCTCATTCTTATCTCAA 59.449 37.037 0.00 0.00 0.00 3.02
4343 4403 7.044181 CCACTAAACTGCTCATTCTTATCTCA 58.956 38.462 0.00 0.00 0.00 3.27
4344 4404 6.481644 CCCACTAAACTGCTCATTCTTATCTC 59.518 42.308 0.00 0.00 0.00 2.75
4345 4405 6.156949 TCCCACTAAACTGCTCATTCTTATCT 59.843 38.462 0.00 0.00 0.00 1.98
4346 4406 6.349300 TCCCACTAAACTGCTCATTCTTATC 58.651 40.000 0.00 0.00 0.00 1.75
4347 4407 6.313519 TCCCACTAAACTGCTCATTCTTAT 57.686 37.500 0.00 0.00 0.00 1.73
4348 4408 5.338381 CCTCCCACTAAACTGCTCATTCTTA 60.338 44.000 0.00 0.00 0.00 2.10
4349 4409 4.566488 CCTCCCACTAAACTGCTCATTCTT 60.566 45.833 0.00 0.00 0.00 2.52
4350 4410 3.054802 CCTCCCACTAAACTGCTCATTCT 60.055 47.826 0.00 0.00 0.00 2.40
4351 4411 3.274288 CCTCCCACTAAACTGCTCATTC 58.726 50.000 0.00 0.00 0.00 2.67
4352 4412 2.619074 GCCTCCCACTAAACTGCTCATT 60.619 50.000 0.00 0.00 0.00 2.57
4353 4413 1.065126 GCCTCCCACTAAACTGCTCAT 60.065 52.381 0.00 0.00 0.00 2.90
4354 4414 0.324943 GCCTCCCACTAAACTGCTCA 59.675 55.000 0.00 0.00 0.00 4.26
4355 4415 0.615850 AGCCTCCCACTAAACTGCTC 59.384 55.000 0.00 0.00 0.00 4.26
4362 4422 1.899437 CGGAAGCAGCCTCCCACTAA 61.899 60.000 4.31 0.00 0.00 2.24
4380 4440 4.901866 AACAGCTTGAACAAAACAAACG 57.098 36.364 0.00 0.00 0.00 3.60
4396 4456 4.022329 ACCATGCCTAAAGTGTTAAACAGC 60.022 41.667 0.00 0.00 0.00 4.40
4400 4460 7.502895 TCAACTAACCATGCCTAAAGTGTTAAA 59.497 33.333 0.00 0.00 0.00 1.52
4410 4470 8.465999 CACATAAATTTCAACTAACCATGCCTA 58.534 33.333 0.00 0.00 0.00 3.93
4421 4481 4.281688 AGCACTGCCACATAAATTTCAACT 59.718 37.500 0.00 0.00 0.00 3.16
4469 4529 0.745845 CCCGGAGCTGGAAGAACATG 60.746 60.000 0.73 0.00 34.07 3.21
4470 4530 1.604378 CCCGGAGCTGGAAGAACAT 59.396 57.895 0.73 0.00 34.07 2.71
4475 4535 3.474570 CCTCCCCGGAGCTGGAAG 61.475 72.222 0.73 0.00 40.69 3.46
4486 4546 2.032071 CGACACCACAACCTCCCC 59.968 66.667 0.00 0.00 0.00 4.81
4493 4554 1.821759 CAAGCACCCGACACCACAA 60.822 57.895 0.00 0.00 0.00 3.33
4501 4562 4.263572 CCACCACCAAGCACCCGA 62.264 66.667 0.00 0.00 0.00 5.14
4522 4583 4.393155 ATCCGCAAGCTCACCGCA 62.393 61.111 0.00 0.00 42.61 5.69
4601 4679 2.743664 TCAACAAGGAGATCGTTGCATG 59.256 45.455 13.60 12.73 43.30 4.06
4602 4680 3.057969 TCAACAAGGAGATCGTTGCAT 57.942 42.857 13.60 2.69 43.30 3.96
4706 4799 1.678635 CAGCCAAATCCCGAGCCAA 60.679 57.895 0.00 0.00 0.00 4.52
4715 4808 1.434696 CGTCATGCCCAGCCAAATC 59.565 57.895 0.00 0.00 0.00 2.17
4738 4831 0.469144 AGTTCACCAAACCCCGCATT 60.469 50.000 0.00 0.00 38.76 3.56
4742 4835 0.889186 CTGGAGTTCACCAAACCCCG 60.889 60.000 0.00 0.00 38.56 5.73
4769 4862 3.547054 TTAACCGAAGTTGGTGTGACT 57.453 42.857 0.00 0.00 42.89 3.41
4770 4863 3.608474 GCATTAACCGAAGTTGGTGTGAC 60.608 47.826 0.00 0.00 42.89 3.67
4773 4866 1.883926 GGCATTAACCGAAGTTGGTGT 59.116 47.619 0.00 0.00 42.89 4.16
4804 4897 0.039035 AACGCCTCCAATAAGGGCAA 59.961 50.000 0.00 0.00 45.50 4.52
4805 4898 0.679640 CAACGCCTCCAATAAGGGCA 60.680 55.000 0.00 0.00 45.50 5.36
4806 4899 0.679960 ACAACGCCTCCAATAAGGGC 60.680 55.000 0.00 0.00 42.18 5.19
4807 4900 1.339631 TGACAACGCCTCCAATAAGGG 60.340 52.381 0.00 0.00 36.88 3.95
4808 4901 2.009774 CTGACAACGCCTCCAATAAGG 58.990 52.381 0.00 0.00 39.62 2.69
4809 4902 2.009774 CCTGACAACGCCTCCAATAAG 58.990 52.381 0.00 0.00 0.00 1.73
4810 4903 1.339631 CCCTGACAACGCCTCCAATAA 60.340 52.381 0.00 0.00 0.00 1.40
4811 4904 0.251916 CCCTGACAACGCCTCCAATA 59.748 55.000 0.00 0.00 0.00 1.90
4812 4905 1.002134 CCCTGACAACGCCTCCAAT 60.002 57.895 0.00 0.00 0.00 3.16
4813 4906 2.429930 CCCTGACAACGCCTCCAA 59.570 61.111 0.00 0.00 0.00 3.53
4814 4907 4.329545 GCCCTGACAACGCCTCCA 62.330 66.667 0.00 0.00 0.00 3.86
4815 4908 3.628646 ATGCCCTGACAACGCCTCC 62.629 63.158 0.00 0.00 0.00 4.30
4816 4909 2.045926 ATGCCCTGACAACGCCTC 60.046 61.111 0.00 0.00 0.00 4.70
4817 4910 2.045926 GATGCCCTGACAACGCCT 60.046 61.111 0.00 0.00 0.00 5.52
4818 4911 1.648467 GAAGATGCCCTGACAACGCC 61.648 60.000 0.00 0.00 0.00 5.68
4819 4912 0.955428 TGAAGATGCCCTGACAACGC 60.955 55.000 0.00 0.00 0.00 4.84
4820 4913 1.081892 CTGAAGATGCCCTGACAACG 58.918 55.000 0.00 0.00 0.00 4.10
4821 4914 0.807496 GCTGAAGATGCCCTGACAAC 59.193 55.000 0.00 0.00 0.00 3.32
4822 4915 0.322816 GGCTGAAGATGCCCTGACAA 60.323 55.000 0.00 0.00 44.32 3.18
4823 4916 1.300963 GGCTGAAGATGCCCTGACA 59.699 57.895 0.00 0.00 44.32 3.58
4824 4917 4.232310 GGCTGAAGATGCCCTGAC 57.768 61.111 0.00 0.00 44.32 3.51
4829 4922 3.056313 GCCAACGGCTGAAGATGCC 62.056 63.158 0.00 0.00 46.69 4.40
4830 4923 2.486966 GCCAACGGCTGAAGATGC 59.513 61.111 0.00 0.00 46.69 3.91
4840 4933 1.750399 CCTCTTGATGGGCCAACGG 60.750 63.158 11.89 5.20 0.00 4.44
4841 4934 1.750399 CCCTCTTGATGGGCCAACG 60.750 63.158 11.89 0.00 37.99 4.10
4842 4935 1.380380 CCCCTCTTGATGGGCCAAC 60.380 63.158 11.89 9.11 43.26 3.77
4843 4936 3.099171 CCCCTCTTGATGGGCCAA 58.901 61.111 11.89 0.00 43.26 4.52
4847 4940 1.643310 TTTTTGCCCCTCTTGATGGG 58.357 50.000 6.61 6.61 45.22 4.00
4891 4984 3.799755 CCCAGTGCGCGGTTTAGC 61.800 66.667 8.83 0.00 0.00 3.09
4892 4985 3.124921 CCCCAGTGCGCGGTTTAG 61.125 66.667 8.83 0.00 0.00 1.85
4893 4986 4.708386 CCCCCAGTGCGCGGTTTA 62.708 66.667 8.83 0.00 0.00 2.01
4929 5022 3.569690 GATTAACCGTGGGCGCCG 61.570 66.667 22.54 9.21 36.67 6.46
4930 5023 1.587933 TTTGATTAACCGTGGGCGCC 61.588 55.000 21.18 21.18 36.67 6.53
4931 5024 0.241481 TTTTGATTAACCGTGGGCGC 59.759 50.000 0.00 0.00 36.67 6.53
4932 5025 2.708386 TTTTTGATTAACCGTGGGCG 57.292 45.000 0.00 0.00 37.95 6.13
4951 5044 5.517037 TGTTTGCGTCGTTTTTGATTTTT 57.483 30.435 0.00 0.00 0.00 1.94
4952 5045 5.289675 TCATGTTTGCGTCGTTTTTGATTTT 59.710 32.000 0.00 0.00 0.00 1.82
4953 5046 4.800993 TCATGTTTGCGTCGTTTTTGATTT 59.199 33.333 0.00 0.00 0.00 2.17
4954 5047 4.206200 GTCATGTTTGCGTCGTTTTTGATT 59.794 37.500 0.00 0.00 0.00 2.57
4955 5048 3.728718 GTCATGTTTGCGTCGTTTTTGAT 59.271 39.130 0.00 0.00 0.00 2.57
4956 5049 3.102276 GTCATGTTTGCGTCGTTTTTGA 58.898 40.909 0.00 0.00 0.00 2.69
4957 5050 3.105203 AGTCATGTTTGCGTCGTTTTTG 58.895 40.909 0.00 0.00 0.00 2.44
4958 5051 3.181505 TGAGTCATGTTTGCGTCGTTTTT 60.182 39.130 0.00 0.00 0.00 1.94
4959 5052 2.353269 TGAGTCATGTTTGCGTCGTTTT 59.647 40.909 0.00 0.00 0.00 2.43
4960 5053 1.937223 TGAGTCATGTTTGCGTCGTTT 59.063 42.857 0.00 0.00 0.00 3.60
4961 5054 1.577468 TGAGTCATGTTTGCGTCGTT 58.423 45.000 0.00 0.00 0.00 3.85
4962 5055 1.577468 TTGAGTCATGTTTGCGTCGT 58.423 45.000 0.00 0.00 0.00 4.34
4963 5056 2.661504 TTTGAGTCATGTTTGCGTCG 57.338 45.000 0.00 0.00 0.00 5.12
4964 5057 6.397480 CGTTAAATTTGAGTCATGTTTGCGTC 60.397 38.462 0.00 2.41 0.00 5.19
4965 5058 5.398122 CGTTAAATTTGAGTCATGTTTGCGT 59.602 36.000 0.00 0.00 0.00 5.24
4966 5059 5.662815 GCGTTAAATTTGAGTCATGTTTGCG 60.663 40.000 0.00 14.15 0.00 4.85
4967 5060 5.174761 TGCGTTAAATTTGAGTCATGTTTGC 59.825 36.000 0.00 8.21 0.00 3.68
4968 5061 6.746104 TGCGTTAAATTTGAGTCATGTTTG 57.254 33.333 0.00 0.46 0.00 2.93
4969 5062 7.763172 TTTGCGTTAAATTTGAGTCATGTTT 57.237 28.000 0.00 1.18 0.00 2.83
4970 5063 7.945033 ATTTGCGTTAAATTTGAGTCATGTT 57.055 28.000 0.00 0.00 35.47 2.71
4971 5064 9.289303 GATATTTGCGTTAAATTTGAGTCATGT 57.711 29.630 0.00 0.00 39.61 3.21
4972 5065 8.463709 CGATATTTGCGTTAAATTTGAGTCATG 58.536 33.333 0.00 0.00 39.61 3.07
4973 5066 7.643764 CCGATATTTGCGTTAAATTTGAGTCAT 59.356 33.333 0.00 0.00 39.61 3.06
4974 5067 6.964370 CCGATATTTGCGTTAAATTTGAGTCA 59.036 34.615 0.00 0.00 39.61 3.41
4975 5068 6.075572 GCCGATATTTGCGTTAAATTTGAGTC 60.076 38.462 0.00 0.00 39.61 3.36
4976 5069 5.741982 GCCGATATTTGCGTTAAATTTGAGT 59.258 36.000 0.00 0.00 39.61 3.41
4977 5070 5.108780 CGCCGATATTTGCGTTAAATTTGAG 60.109 40.000 0.00 0.00 45.43 3.02
4978 5071 4.731000 CGCCGATATTTGCGTTAAATTTGA 59.269 37.500 0.00 0.00 45.43 2.69
4979 5072 4.977103 CGCCGATATTTGCGTTAAATTTG 58.023 39.130 0.00 0.00 45.43 2.32
4989 5082 0.928229 ACGAACTCGCCGATATTTGC 59.072 50.000 0.00 0.00 44.43 3.68
4990 5083 2.601314 TGAACGAACTCGCCGATATTTG 59.399 45.455 0.00 0.00 44.43 2.32
4991 5084 2.883574 TGAACGAACTCGCCGATATTT 58.116 42.857 0.00 0.00 44.43 1.40
4992 5085 2.572191 TGAACGAACTCGCCGATATT 57.428 45.000 0.00 0.00 44.43 1.28
4993 5086 2.572191 TTGAACGAACTCGCCGATAT 57.428 45.000 0.00 0.00 44.43 1.63
4994 5087 1.987770 GTTTGAACGAACTCGCCGATA 59.012 47.619 0.00 0.00 44.43 2.92
4995 5088 0.788391 GTTTGAACGAACTCGCCGAT 59.212 50.000 0.00 0.00 44.43 4.18
4996 5089 0.249155 AGTTTGAACGAACTCGCCGA 60.249 50.000 0.00 0.00 44.43 5.54
4997 5090 0.580104 AAGTTTGAACGAACTCGCCG 59.420 50.000 7.74 0.00 44.43 6.46
4998 5091 3.865224 TTAAGTTTGAACGAACTCGCC 57.135 42.857 7.74 0.00 44.43 5.54
4999 5092 4.580528 TGTTTAAGTTTGAACGAACTCGC 58.419 39.130 7.74 1.40 44.43 5.03
5000 5093 8.928844 AATATGTTTAAGTTTGAACGAACTCG 57.071 30.769 7.74 0.00 38.86 4.18
5043 5136 0.674581 GGTAGCCCGCGGTAGTTTTT 60.675 55.000 26.12 3.49 0.00 1.94
5044 5137 1.078918 GGTAGCCCGCGGTAGTTTT 60.079 57.895 26.12 4.98 0.00 2.43
5045 5138 2.580815 GGTAGCCCGCGGTAGTTT 59.419 61.111 26.12 6.86 0.00 2.66
5046 5139 3.464494 GGGTAGCCCGCGGTAGTT 61.464 66.667 26.12 10.37 32.13 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.