Multiple sequence alignment - TraesCS1A01G090400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G090400 chr1A 100.000 5183 0 0 1 5183 80567507 80562325 0.000000e+00 9572.0
1 TraesCS1A01G090400 chr1B 92.144 1413 48 24 3064 4448 138733982 138732605 0.000000e+00 1936.0
2 TraesCS1A01G090400 chr1B 90.093 969 65 18 867 1823 138734956 138734007 0.000000e+00 1229.0
3 TraesCS1A01G090400 chr1B 95.578 294 9 2 4470 4760 138732226 138731934 7.860000e-128 468.0
4 TraesCS1A01G090400 chr1B 80.443 271 41 7 80 348 138737873 138737613 4.090000e-46 196.0
5 TraesCS1A01G090400 chr1B 82.403 233 18 4 641 870 138736246 138736034 1.150000e-41 182.0
6 TraesCS1A01G090400 chr1B 86.061 165 18 5 454 617 138736811 138736651 6.900000e-39 172.0
7 TraesCS1A01G090400 chr1B 94.393 107 3 2 4761 4867 138730811 138730708 1.490000e-35 161.0
8 TraesCS1A01G090400 chr1B 85.593 118 15 2 291 407 138737630 138737514 7.050000e-24 122.0
9 TraesCS1A01G090400 chr1B 92.157 51 4 0 4817 4867 39299502 39299452 7.200000e-09 73.1
10 TraesCS1A01G090400 chr7A 94.075 1114 48 5 1823 2936 5688700 5687605 0.000000e+00 1676.0
11 TraesCS1A01G090400 chr1D 94.806 1059 35 5 3710 4760 86095272 86094226 0.000000e+00 1633.0
12 TraesCS1A01G090400 chr1D 93.280 1116 62 6 1823 2936 455999138 455998034 0.000000e+00 1633.0
13 TraesCS1A01G090400 chr1D 93.976 498 22 1 469 958 86103763 86103266 0.000000e+00 747.0
14 TraesCS1A01G090400 chr1D 93.593 437 25 2 1388 1821 86102857 86102421 0.000000e+00 649.0
15 TraesCS1A01G090400 chr1D 89.239 381 20 10 992 1367 86103208 86102844 1.700000e-124 457.0
16 TraesCS1A01G090400 chr1D 88.669 353 35 5 1 351 86104180 86103831 4.800000e-115 425.0
17 TraesCS1A01G090400 chr1D 90.977 266 21 3 3348 3610 86097229 86096964 6.380000e-94 355.0
18 TraesCS1A01G090400 chr1D 87.778 270 25 5 2991 3260 86099974 86099713 5.040000e-80 309.0
19 TraesCS1A01G090400 chr1D 95.312 128 4 1 3597 3724 86095415 86095290 8.800000e-48 202.0
20 TraesCS1A01G090400 chr1D 97.196 107 3 0 4761 4867 86092585 86092479 1.150000e-41 182.0
21 TraesCS1A01G090400 chr1D 92.000 75 6 0 3267 3341 86098531 86098457 7.100000e-19 106.0
22 TraesCS1A01G090400 chr1D 100.000 37 0 0 4831 4867 22898400 22898364 9.310000e-08 69.4
23 TraesCS1A01G090400 chr6B 89.039 1113 88 11 1824 2936 25804803 25805881 0.000000e+00 1349.0
24 TraesCS1A01G090400 chr6B 84.036 783 110 12 1821 2591 719906771 719905992 0.000000e+00 739.0
25 TraesCS1A01G090400 chr6B 89.899 99 9 1 4459 4557 716568560 716568657 5.450000e-25 126.0
26 TraesCS1A01G090400 chr3B 88.441 1116 92 10 1823 2936 739921119 739922199 0.000000e+00 1312.0
27 TraesCS1A01G090400 chr3B 85.689 1118 110 20 1824 2936 769706923 769705851 0.000000e+00 1133.0
28 TraesCS1A01G090400 chr3B 90.909 99 8 1 4459 4557 820478016 820477919 1.170000e-26 132.0
29 TraesCS1A01G090400 chr2B 85.872 1090 111 22 1826 2913 104305904 104304856 0.000000e+00 1120.0
30 TraesCS1A01G090400 chr7D 92.944 737 51 1 1823 2559 57797089 57796354 0.000000e+00 1072.0
31 TraesCS1A01G090400 chr7D 86.189 572 64 4 1143 1708 30753349 30753911 5.740000e-169 604.0
32 TraesCS1A01G090400 chr4A 91.429 770 33 10 2176 2936 704580246 704580991 0.000000e+00 1026.0
33 TraesCS1A01G090400 chr4A 91.299 770 34 10 2176 2936 704600111 704600856 0.000000e+00 1020.0
34 TraesCS1A01G090400 chr4A 86.576 514 55 6 1170 1676 697986887 697986381 5.860000e-154 555.0
35 TraesCS1A01G090400 chr7B 84.334 766 104 12 1822 2575 74814558 74813797 0.000000e+00 736.0
36 TraesCS1A01G090400 chr6A 89.950 597 18 9 2318 2914 107220907 107220353 0.000000e+00 732.0
37 TraesCS1A01G090400 chr6A 94.020 301 16 2 4885 5183 5313441 5313141 6.120000e-124 455.0
38 TraesCS1A01G090400 chr3A 88.091 613 68 5 1820 2429 714113198 714112588 0.000000e+00 723.0
39 TraesCS1A01G090400 chr3A 92.763 304 17 3 4885 5183 655774345 655774042 7.970000e-118 435.0
40 TraesCS1A01G090400 chr3A 92.434 304 16 5 4885 5183 620259050 620259351 1.330000e-115 427.0
41 TraesCS1A01G090400 chr5B 84.100 761 106 11 1827 2575 587755838 587755081 0.000000e+00 721.0
42 TraesCS1A01G090400 chr5B 89.394 66 6 1 2991 3055 395927260 395927325 1.200000e-11 82.4
43 TraesCS1A01G090400 chr5D 94.382 356 19 1 2582 2936 385436594 385436949 3.530000e-151 545.0
44 TraesCS1A01G090400 chr5D 89.130 322 19 4 2592 2913 514409720 514409415 2.260000e-103 387.0
45 TraesCS1A01G090400 chr5A 93.421 304 15 3 4885 5183 581971976 581972279 3.680000e-121 446.0
46 TraesCS1A01G090400 chr5A 92.763 304 17 3 4885 5183 691376781 691376478 7.970000e-118 435.0
47 TraesCS1A01G090400 chr5A 92.929 297 19 2 4885 5180 588247354 588247649 1.030000e-116 431.0
48 TraesCS1A01G090400 chr2A 93.000 300 18 2 4885 5183 694186015 694185718 7.970000e-118 435.0
49 TraesCS1A01G090400 chr2A 89.080 348 37 1 2567 2914 2734476 2734822 1.030000e-116 431.0
50 TraesCS1A01G090400 chr2A 92.459 305 17 4 4885 5183 673222081 673221777 1.030000e-116 431.0
51 TraesCS1A01G090400 chr2A 92.434 304 18 3 4885 5183 529570331 529570028 3.710000e-116 429.0
52 TraesCS1A01G090400 chr2D 79.714 350 55 10 257 603 610246237 610246573 6.710000e-59 239.0
53 TraesCS1A01G090400 chr3D 78.571 238 32 12 1177 1401 173819196 173818965 7.000000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G090400 chr1A 80562325 80567507 5182 True 9572.00 9572 100.0000 1 5183 1 chr1A.!!$R1 5182
1 TraesCS1A01G090400 chr1B 138730708 138737873 7165 True 558.25 1936 88.3385 80 4867 8 chr1B.!!$R2 4787
2 TraesCS1A01G090400 chr7A 5687605 5688700 1095 True 1676.00 1676 94.0750 1823 2936 1 chr7A.!!$R1 1113
3 TraesCS1A01G090400 chr1D 455998034 455999138 1104 True 1633.00 1633 93.2800 1823 2936 1 chr1D.!!$R2 1113
4 TraesCS1A01G090400 chr1D 86092479 86104180 11701 True 506.50 1633 92.3546 1 4867 10 chr1D.!!$R3 4866
5 TraesCS1A01G090400 chr6B 25804803 25805881 1078 False 1349.00 1349 89.0390 1824 2936 1 chr6B.!!$F1 1112
6 TraesCS1A01G090400 chr6B 719905992 719906771 779 True 739.00 739 84.0360 1821 2591 1 chr6B.!!$R1 770
7 TraesCS1A01G090400 chr3B 739921119 739922199 1080 False 1312.00 1312 88.4410 1823 2936 1 chr3B.!!$F1 1113
8 TraesCS1A01G090400 chr3B 769705851 769706923 1072 True 1133.00 1133 85.6890 1824 2936 1 chr3B.!!$R1 1112
9 TraesCS1A01G090400 chr2B 104304856 104305904 1048 True 1120.00 1120 85.8720 1826 2913 1 chr2B.!!$R1 1087
10 TraesCS1A01G090400 chr7D 57796354 57797089 735 True 1072.00 1072 92.9440 1823 2559 1 chr7D.!!$R1 736
11 TraesCS1A01G090400 chr7D 30753349 30753911 562 False 604.00 604 86.1890 1143 1708 1 chr7D.!!$F1 565
12 TraesCS1A01G090400 chr4A 704580246 704580991 745 False 1026.00 1026 91.4290 2176 2936 1 chr4A.!!$F1 760
13 TraesCS1A01G090400 chr4A 704600111 704600856 745 False 1020.00 1020 91.2990 2176 2936 1 chr4A.!!$F2 760
14 TraesCS1A01G090400 chr4A 697986381 697986887 506 True 555.00 555 86.5760 1170 1676 1 chr4A.!!$R1 506
15 TraesCS1A01G090400 chr7B 74813797 74814558 761 True 736.00 736 84.3340 1822 2575 1 chr7B.!!$R1 753
16 TraesCS1A01G090400 chr6A 107220353 107220907 554 True 732.00 732 89.9500 2318 2914 1 chr6A.!!$R2 596
17 TraesCS1A01G090400 chr3A 714112588 714113198 610 True 723.00 723 88.0910 1820 2429 1 chr3A.!!$R2 609
18 TraesCS1A01G090400 chr5B 587755081 587755838 757 True 721.00 721 84.1000 1827 2575 1 chr5B.!!$R1 748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
638 1709 0.110104 AAGAAGCCAAGCTGCAGACT 59.890 50.0 20.43 11.55 39.62 3.24 F
660 1739 0.687354 ACGACAATCCTGACAGGCTT 59.313 50.0 17.33 10.90 34.61 4.35 F
1018 3227 0.894141 CATGGAAATGGCCAACCGAA 59.106 50.0 10.96 0.00 42.16 4.30 F
2938 7222 0.036306 GACCGTGTCCACCCTGATTT 59.964 55.0 0.00 0.00 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1991 6213 0.519961 GCGGCGGTGACTATGTTTTT 59.480 50.0 9.78 0.0 0.00 1.94 R
2100 6324 0.533755 GTCAAGAGGCTATGGCGCAT 60.534 55.0 10.83 3.4 39.81 4.73 R
2964 7248 0.325484 TGAATTTCAGGGGCCATGGG 60.325 55.0 19.39 0.0 0.00 4.00 R
4915 15234 0.103208 GCCACGTAGAGGTCCATCTG 59.897 60.0 0.00 0.0 41.49 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 80 9.874205 ATGGTAATTTTACTGTTCATCAAATGG 57.126 29.630 0.87 0.00 34.16 3.16
88 90 2.842457 TCATCAAATGGAGATGAGCCG 58.158 47.619 2.00 0.00 44.98 5.52
104 107 0.536724 GCCGGGGCTCAAATTGAATT 59.463 50.000 2.18 0.00 38.26 2.17
151 154 8.077386 TCAAAATTCAAACATACGTAAGGTTCC 58.923 33.333 14.09 0.00 46.39 3.62
159 162 4.159879 ACATACGTAAGGTTCCTCTTCCTG 59.840 45.833 0.00 0.00 46.39 3.86
160 163 2.606378 ACGTAAGGTTCCTCTTCCTGT 58.394 47.619 0.00 0.00 46.39 4.00
204 208 0.178828 TTTCCCCCTCCCACCATGTA 60.179 55.000 0.00 0.00 0.00 2.29
261 265 1.132262 CACCACACCATAATTGACCGC 59.868 52.381 0.00 0.00 0.00 5.68
275 279 4.060038 CCGCACCTTCCCGTACGT 62.060 66.667 15.21 0.00 0.00 3.57
285 289 1.517694 CCCGTACGTCCCACAATCG 60.518 63.158 15.21 0.00 0.00 3.34
289 293 0.928229 GTACGTCCCACAATCGCATC 59.072 55.000 0.00 0.00 0.00 3.91
299 303 5.036737 CCCACAATCGCATCAATTAACTTC 58.963 41.667 0.00 0.00 0.00 3.01
334 378 4.142182 ACCGCATCAATTCCACCTTAATTG 60.142 41.667 0.00 0.00 42.89 2.32
348 392 6.362283 CCACCTTAATTGACTTAACTTTTGCG 59.638 38.462 0.00 0.00 0.00 4.85
349 393 6.915843 CACCTTAATTGACTTAACTTTTGCGT 59.084 34.615 0.00 0.00 0.00 5.24
357 401 9.744468 ATTGACTTAACTTTTGCGTTAATTTCT 57.256 25.926 0.00 0.00 38.33 2.52
366 410 9.485591 ACTTTTGCGTTAATTTCTTATATCACG 57.514 29.630 0.00 0.00 0.00 4.35
368 412 8.814733 TTTGCGTTAATTTCTTATATCACGTG 57.185 30.769 9.94 9.94 0.00 4.49
390 434 9.745880 ACGTGATTTACTTACCTTACATATCAG 57.254 33.333 0.00 0.00 0.00 2.90
416 460 9.028185 GTTCCATAATTTAAGTAGTACTCCACG 57.972 37.037 2.58 0.00 0.00 4.94
419 463 8.192774 CCATAATTTAAGTAGTACTCCACGACA 58.807 37.037 2.58 0.00 35.39 4.35
430 474 1.129251 CTCCACGACAATGCATGACAC 59.871 52.381 0.00 0.00 0.00 3.67
431 475 0.873721 CCACGACAATGCATGACACA 59.126 50.000 0.00 0.00 0.00 3.72
433 477 2.476686 CCACGACAATGCATGACACATC 60.477 50.000 0.00 0.00 0.00 3.06
436 480 2.093890 GACAATGCATGACACATCCCA 58.906 47.619 0.00 0.00 0.00 4.37
438 482 2.291089 ACAATGCATGACACATCCCAGA 60.291 45.455 0.00 0.00 0.00 3.86
442 486 3.433343 TGCATGACACATCCCAGATTTT 58.567 40.909 0.00 0.00 0.00 1.82
504 1204 3.872696 TGATTTGTATCGGCTCACATGT 58.127 40.909 0.00 0.00 33.23 3.21
512 1212 1.552792 TCGGCTCACATGTGTTATGGA 59.447 47.619 24.63 13.83 0.00 3.41
580 1280 9.447157 TGAAAAGTTTGGATTTTCTGAAAATGT 57.553 25.926 27.74 10.39 43.74 2.71
604 1304 9.372189 TGTGATTCATATATCTCCTTCTTCTCA 57.628 33.333 0.00 0.00 0.00 3.27
616 1687 5.971763 TCCTTCTTCTCATTCTGACTTAGC 58.028 41.667 0.00 0.00 0.00 3.09
638 1709 0.110104 AAGAAGCCAAGCTGCAGACT 59.890 50.000 20.43 11.55 39.62 3.24
660 1739 0.687354 ACGACAATCCTGACAGGCTT 59.313 50.000 17.33 10.90 34.61 4.35
950 3119 1.210234 CAGCATCATCCAGTACACCCA 59.790 52.381 0.00 0.00 0.00 4.51
953 3122 2.434336 GCATCATCCAGTACACCCAGTA 59.566 50.000 0.00 0.00 0.00 2.74
964 3133 2.245582 ACACCCAGTACTGAGTACACC 58.754 52.381 24.68 0.00 41.03 4.16
965 3134 1.549170 CACCCAGTACTGAGTACACCC 59.451 57.143 24.68 0.00 41.03 4.61
966 3135 1.432024 ACCCAGTACTGAGTACACCCT 59.568 52.381 24.68 1.03 41.03 4.34
967 3136 1.825474 CCCAGTACTGAGTACACCCTG 59.175 57.143 24.68 12.93 41.03 4.45
968 3137 1.204941 CCAGTACTGAGTACACCCTGC 59.795 57.143 24.68 0.00 41.03 4.85
988 3157 2.286872 CACAGATTTGGAGCTAGGCAG 58.713 52.381 0.00 0.00 0.00 4.85
1018 3227 0.894141 CATGGAAATGGCCAACCGAA 59.106 50.000 10.96 0.00 42.16 4.30
1067 3279 1.895238 GCCCGTACCTGCTCAACTA 59.105 57.895 0.00 0.00 0.00 2.24
1076 3288 2.169352 ACCTGCTCAACTACCTGCTATG 59.831 50.000 0.00 0.00 0.00 2.23
1110 3322 2.711542 TCCGCCATTTTTCTCTTCTCC 58.288 47.619 0.00 0.00 0.00 3.71
1120 3332 8.700051 CCATTTTTCTCTTCTCCTAGTATCAGA 58.300 37.037 0.00 0.00 0.00 3.27
1141 3353 2.480224 ATTTGCTCCATCGCATTTCG 57.520 45.000 0.00 0.00 40.04 3.46
1252 3464 4.421479 CTGAAGGACGACGCCGCT 62.421 66.667 0.00 0.00 39.95 5.52
1265 3480 2.741985 CCGCTGCCAATGACGACA 60.742 61.111 0.00 0.00 0.00 4.35
1266 3481 2.324330 CCGCTGCCAATGACGACAA 61.324 57.895 0.00 0.00 0.00 3.18
1282 3497 1.000506 GACAAGTGGCTTCAGTCCGTA 59.999 52.381 0.00 0.00 0.00 4.02
1323 3538 1.990614 AGACGGCCTTCCTCTTCCC 60.991 63.158 5.45 0.00 0.00 3.97
1454 3669 3.358076 CTCTTCACCGCCGTCCTCC 62.358 68.421 0.00 0.00 0.00 4.30
1493 3708 1.575576 CGAGTTCGTGACCGAGTCCT 61.576 60.000 2.23 0.00 45.24 3.85
1652 3873 1.140852 CGTCCATATTCCTGAAGGCCA 59.859 52.381 5.01 0.00 34.44 5.36
1728 3957 2.584835 TAACTGCCTCACCATTGCTT 57.415 45.000 0.00 0.00 0.00 3.91
1734 3963 1.340889 GCCTCACCATTGCTTTGTCAA 59.659 47.619 0.00 0.00 0.00 3.18
1798 4031 4.751098 GCACATAATACGGATTTAACGGGA 59.249 41.667 0.00 0.00 35.23 5.14
1882 6056 2.261671 CCTGTTCAGGACCGGACG 59.738 66.667 9.46 0.00 34.79 4.79
1917 6137 3.247006 TCGGTAGAAAATCTGGTCAGC 57.753 47.619 0.00 0.00 0.00 4.26
1959 6179 1.731969 GAAACTGTCGGTCCGGTCG 60.732 63.158 12.29 7.54 0.00 4.79
2065 6288 1.610363 CCGTGTGAACCATCATGTCCA 60.610 52.381 0.00 0.00 38.01 4.02
2100 6324 2.986019 TCATCCCTTCCTCACTTTCCAA 59.014 45.455 0.00 0.00 0.00 3.53
2118 6342 0.181114 AATGCGCCATAGCCTCTTGA 59.819 50.000 4.18 0.00 36.02 3.02
2369 6617 1.087501 GGGGATTTCTCACGCACTTC 58.912 55.000 0.00 0.00 0.00 3.01
2387 6644 5.725864 GCACTTCAGTTTCGTTAGTTTCGTT 60.726 40.000 0.00 0.00 0.00 3.85
2438 6695 5.535030 AGCAGGTCGTATGTTCATGTATCTA 59.465 40.000 0.00 0.00 0.00 1.98
2532 6791 3.254657 ACTCATCTAGATAAGCTCGTGCC 59.745 47.826 4.54 0.00 40.80 5.01
2541 6809 0.961857 AAGCTCGTGCCATCATGCAA 60.962 50.000 5.73 0.00 44.11 4.08
2572 6840 3.009916 AGGACTGGTAGTTACGGAGAGAA 59.990 47.826 0.00 0.00 0.00 2.87
2585 6853 3.517901 ACGGAGAGAAAGAGAGAGAGAGA 59.482 47.826 0.00 0.00 0.00 3.10
2651 6919 2.045561 TTCGCCCAAGTTTCAGTTGA 57.954 45.000 0.00 0.00 30.18 3.18
2666 6950 7.819900 AGTTTCAGTTGATAGCTAATTTCTCGT 59.180 33.333 0.00 0.00 0.00 4.18
2792 7076 1.153628 CATTCGGTCCAGTCGGTCC 60.154 63.158 0.00 0.00 37.15 4.46
2936 7220 3.388841 GACCGTGTCCACCCTGAT 58.611 61.111 0.00 0.00 0.00 2.90
2937 7221 1.677552 GACCGTGTCCACCCTGATT 59.322 57.895 0.00 0.00 0.00 2.57
2938 7222 0.036306 GACCGTGTCCACCCTGATTT 59.964 55.000 0.00 0.00 0.00 2.17
2939 7223 0.476771 ACCGTGTCCACCCTGATTTT 59.523 50.000 0.00 0.00 0.00 1.82
2940 7224 0.881118 CCGTGTCCACCCTGATTTTG 59.119 55.000 0.00 0.00 0.00 2.44
2941 7225 1.544537 CCGTGTCCACCCTGATTTTGA 60.545 52.381 0.00 0.00 0.00 2.69
2942 7226 1.535462 CGTGTCCACCCTGATTTTGAC 59.465 52.381 0.00 0.00 0.00 3.18
2943 7227 1.886542 GTGTCCACCCTGATTTTGACC 59.113 52.381 0.00 0.00 0.00 4.02
2946 7230 0.037590 CCACCCTGATTTTGACCGGA 59.962 55.000 9.46 0.00 0.00 5.14
2964 7248 2.087646 GGAAGAAATCAGTGTGAGGGC 58.912 52.381 0.00 0.00 0.00 5.19
2966 7250 0.329596 AGAAATCAGTGTGAGGGCCC 59.670 55.000 16.46 16.46 0.00 5.80
2967 7251 0.038166 GAAATCAGTGTGAGGGCCCA 59.962 55.000 27.56 0.00 0.00 5.36
2968 7252 0.706433 AAATCAGTGTGAGGGCCCAT 59.294 50.000 27.56 9.36 0.00 4.00
2969 7253 0.033796 AATCAGTGTGAGGGCCCATG 60.034 55.000 27.56 12.40 0.00 3.66
2970 7254 1.929860 ATCAGTGTGAGGGCCCATGG 61.930 60.000 27.56 4.14 0.00 3.66
2980 7264 2.041612 GCCCATGGCCCCTGAAAT 60.042 61.111 6.09 0.00 44.06 2.17
2981 7265 1.690283 GCCCATGGCCCCTGAAATT 60.690 57.895 6.09 0.00 44.06 1.82
2982 7266 1.689243 GCCCATGGCCCCTGAAATTC 61.689 60.000 6.09 0.00 44.06 2.17
2983 7267 0.325484 CCCATGGCCCCTGAAATTCA 60.325 55.000 6.09 0.00 0.00 2.57
2984 7268 1.117150 CCATGGCCCCTGAAATTCAG 58.883 55.000 15.64 15.64 43.91 3.02
3183 7467 2.588731 GCAACCTGCAACGAAAACC 58.411 52.632 0.00 0.00 44.26 3.27
3190 7474 2.951458 CAACGAAAACCGAGGGGC 59.049 61.111 0.00 0.00 41.76 5.80
3254 7538 3.130693 GGAGTAAGCAGTATCTGAACCGT 59.869 47.826 0.66 0.00 32.44 4.83
3259 8725 1.204941 GCAGTATCTGAACCGTCTGGT 59.795 52.381 0.66 0.00 40.39 4.00
3283 8749 5.080337 TGAGACTTGAGAGTGGTGATTAGT 58.920 41.667 0.00 0.00 35.88 2.24
3314 8780 4.781087 AGCTACAGTATTAGGGTTGTTCCA 59.219 41.667 0.00 0.00 38.11 3.53
3316 8782 4.986054 ACAGTATTAGGGTTGTTCCACA 57.014 40.909 0.00 0.00 38.11 4.17
3342 8808 2.501723 GGGATAGTTGGACTGCTTCTGA 59.498 50.000 0.00 0.00 0.00 3.27
3346 8812 1.000283 AGTTGGACTGCTTCTGACTCG 60.000 52.381 0.00 0.00 0.00 4.18
3350 10037 1.332178 GACTGCTTCTGACTCGAACG 58.668 55.000 0.00 0.00 0.00 3.95
3414 10103 2.816672 TGAGCATAACAACGGATTTGCA 59.183 40.909 0.00 0.00 39.01 4.08
3420 10109 2.399396 ACAACGGATTTGCAAACTCG 57.601 45.000 24.91 24.91 39.01 4.18
3581 10271 1.963338 GTGTGCTGGCAGAGGTGTC 60.963 63.158 20.86 0.00 0.00 3.67
3632 11884 4.765339 TCTGGTTATGACTTCTTCTCACGA 59.235 41.667 0.00 0.00 0.00 4.35
3682 11934 6.989659 ACGAGGTGATCTTGTAAACTTTCTA 58.010 36.000 0.00 0.00 38.31 2.10
3749 12036 7.971183 ACTTATGGTCTTCTTTCTTGAGTTC 57.029 36.000 0.00 0.00 0.00 3.01
3823 12110 7.653713 CGGCCATATTGTCTATGGAGAATATAC 59.346 40.741 17.52 13.51 45.57 1.47
4056 12351 9.888878 ATGTGCTTAATCATCTTAAATCATTCG 57.111 29.630 0.00 0.00 0.00 3.34
4150 12445 4.039852 GGGTAAAAATTCAAGGACAAGCCA 59.960 41.667 0.00 0.00 40.02 4.75
4232 12531 2.206750 TGCTTTGAACTACGGTGTCAC 58.793 47.619 0.00 0.00 0.00 3.67
4262 12561 8.845413 ATGCATGGTTACATTTGTTGTTTTAT 57.155 26.923 0.00 0.00 39.87 1.40
4263 12562 8.081208 TGCATGGTTACATTTGTTGTTTTATG 57.919 30.769 0.00 0.00 39.87 1.90
4264 12563 7.712639 TGCATGGTTACATTTGTTGTTTTATGT 59.287 29.630 0.00 0.00 39.87 2.29
4265 12564 8.555361 GCATGGTTACATTTGTTGTTTTATGTT 58.445 29.630 0.00 0.00 39.87 2.71
4266 12565 9.861138 CATGGTTACATTTGTTGTTTTATGTTG 57.139 29.630 0.00 0.00 39.87 3.33
4267 12566 9.606631 ATGGTTACATTTGTTGTTTTATGTTGT 57.393 25.926 0.00 0.00 39.87 3.32
4268 12567 9.436957 TGGTTACATTTGTTGTTTTATGTTGTT 57.563 25.926 0.00 0.00 39.87 2.83
4364 12672 7.934855 AGCTGTGTTGATGATTTTCTCTATT 57.065 32.000 0.00 0.00 0.00 1.73
4373 12681 8.648557 TGATGATTTTCTCTATTAACTCGGTG 57.351 34.615 0.00 0.00 0.00 4.94
4454 13114 7.331791 AGAATGGATGAAGTAAAGTAGACACC 58.668 38.462 0.00 0.00 0.00 4.16
4456 13116 6.428083 TGGATGAAGTAAAGTAGACACCAA 57.572 37.500 0.00 0.00 0.00 3.67
4457 13117 6.833041 TGGATGAAGTAAAGTAGACACCAAA 58.167 36.000 0.00 0.00 0.00 3.28
4492 13158 7.856145 AATAGTCAAACAAATGTGGCAAAAA 57.144 28.000 0.00 0.00 0.00 1.94
4572 13238 1.100463 AGGCGCACACACACATTTGA 61.100 50.000 10.83 0.00 0.00 2.69
4573 13239 0.039256 GGCGCACACACACATTTGAT 60.039 50.000 10.83 0.00 0.00 2.57
4619 13285 9.853177 AATTATTCCAGTTATAACTTGCTAGCT 57.147 29.630 15.60 0.00 37.08 3.32
4708 13383 1.343069 AAGTTTCGGACCTGCTCTCT 58.657 50.000 0.00 0.00 0.00 3.10
4823 15142 0.794605 GCATTCGCGTTGGCTTTCTC 60.795 55.000 5.77 0.00 36.88 2.87
4875 15194 3.890313 CCCTTGCTTGGGCCTTTT 58.110 55.556 4.53 0.00 40.84 2.27
4876 15195 1.372307 CCCTTGCTTGGGCCTTTTG 59.628 57.895 4.53 0.00 40.84 2.44
4877 15196 1.120795 CCCTTGCTTGGGCCTTTTGA 61.121 55.000 4.53 0.00 40.84 2.69
4878 15197 0.978907 CCTTGCTTGGGCCTTTTGAT 59.021 50.000 4.53 0.00 37.74 2.57
4879 15198 2.178580 CCTTGCTTGGGCCTTTTGATA 58.821 47.619 4.53 0.00 37.74 2.15
4880 15199 2.566724 CCTTGCTTGGGCCTTTTGATAA 59.433 45.455 4.53 0.00 37.74 1.75
4881 15200 3.368739 CCTTGCTTGGGCCTTTTGATAAG 60.369 47.826 4.53 0.00 37.74 1.73
4882 15201 2.178580 TGCTTGGGCCTTTTGATAAGG 58.821 47.619 4.53 0.00 40.39 2.69
4883 15202 1.482182 GCTTGGGCCTTTTGATAAGGG 59.518 52.381 4.53 0.00 37.88 3.95
4892 15211 5.836821 CCTTTTGATAAGGGCCTTTAGTC 57.163 43.478 26.29 19.40 33.79 2.59
4893 15212 4.645136 CCTTTTGATAAGGGCCTTTAGTCC 59.355 45.833 26.29 9.76 33.79 3.85
4894 15213 3.945640 TTGATAAGGGCCTTTAGTCCC 57.054 47.619 26.29 8.04 42.94 4.46
4898 15217 3.084304 GGGCCTTTAGTCCCGGTT 58.916 61.111 0.84 0.00 32.00 4.44
4899 15218 1.378119 GGGCCTTTAGTCCCGGTTG 60.378 63.158 0.84 0.00 32.00 3.77
4900 15219 1.377612 GGCCTTTAGTCCCGGTTGT 59.622 57.895 0.00 0.00 0.00 3.32
4901 15220 0.251033 GGCCTTTAGTCCCGGTTGTT 60.251 55.000 0.00 0.00 0.00 2.83
4902 15221 1.003464 GGCCTTTAGTCCCGGTTGTTA 59.997 52.381 0.00 0.00 0.00 2.41
4903 15222 2.079158 GCCTTTAGTCCCGGTTGTTAC 58.921 52.381 0.00 0.00 0.00 2.50
4904 15223 2.550639 GCCTTTAGTCCCGGTTGTTACA 60.551 50.000 0.00 0.00 0.00 2.41
4905 15224 3.069289 CCTTTAGTCCCGGTTGTTACAC 58.931 50.000 0.00 0.00 0.00 2.90
4906 15225 2.437200 TTAGTCCCGGTTGTTACACG 57.563 50.000 0.00 0.00 0.00 4.49
4907 15226 1.614996 TAGTCCCGGTTGTTACACGA 58.385 50.000 0.00 0.00 0.00 4.35
4908 15227 0.752054 AGTCCCGGTTGTTACACGAA 59.248 50.000 0.00 0.00 0.00 3.85
4909 15228 1.345415 AGTCCCGGTTGTTACACGAAT 59.655 47.619 0.00 0.00 0.00 3.34
4910 15229 1.728425 GTCCCGGTTGTTACACGAATC 59.272 52.381 0.00 0.00 0.00 2.52
4911 15230 0.717224 CCCGGTTGTTACACGAATCG 59.283 55.000 0.00 0.00 0.00 3.34
4912 15231 0.717224 CCGGTTGTTACACGAATCGG 59.283 55.000 7.80 0.00 0.00 4.18
4913 15232 0.717224 CGGTTGTTACACGAATCGGG 59.283 55.000 2.20 2.20 35.82 5.14
4914 15233 1.669502 CGGTTGTTACACGAATCGGGA 60.670 52.381 13.47 0.00 32.98 5.14
4915 15234 1.728425 GGTTGTTACACGAATCGGGAC 59.272 52.381 13.47 0.00 32.98 4.46
4916 15235 2.406130 GTTGTTACACGAATCGGGACA 58.594 47.619 13.47 3.14 32.98 4.02
4917 15236 2.357327 TGTTACACGAATCGGGACAG 57.643 50.000 13.47 0.00 32.98 3.51
4918 15237 1.887854 TGTTACACGAATCGGGACAGA 59.112 47.619 13.47 0.00 32.98 3.41
4919 15238 2.494471 TGTTACACGAATCGGGACAGAT 59.506 45.455 13.47 0.00 32.98 2.90
4920 15239 2.858344 GTTACACGAATCGGGACAGATG 59.142 50.000 13.47 0.00 32.98 2.90
4921 15240 0.175760 ACACGAATCGGGACAGATGG 59.824 55.000 13.47 0.00 32.98 3.51
4922 15241 0.459899 CACGAATCGGGACAGATGGA 59.540 55.000 7.80 0.00 28.17 3.41
4923 15242 0.460311 ACGAATCGGGACAGATGGAC 59.540 55.000 7.80 0.00 0.00 4.02
4924 15243 0.249489 CGAATCGGGACAGATGGACC 60.249 60.000 0.00 0.00 0.00 4.46
4925 15244 1.123928 GAATCGGGACAGATGGACCT 58.876 55.000 0.00 0.00 0.00 3.85
4926 15245 1.069358 GAATCGGGACAGATGGACCTC 59.931 57.143 0.00 0.00 0.00 3.85
4927 15246 0.263172 ATCGGGACAGATGGACCTCT 59.737 55.000 0.00 0.00 0.00 3.69
4928 15247 0.924090 TCGGGACAGATGGACCTCTA 59.076 55.000 0.00 0.00 0.00 2.43
4929 15248 1.033574 CGGGACAGATGGACCTCTAC 58.966 60.000 0.00 0.00 0.00 2.59
4930 15249 1.033574 GGGACAGATGGACCTCTACG 58.966 60.000 0.00 0.00 0.00 3.51
4931 15250 1.685491 GGGACAGATGGACCTCTACGT 60.685 57.143 0.00 0.00 0.00 3.57
4932 15251 1.405821 GGACAGATGGACCTCTACGTG 59.594 57.143 0.00 0.00 0.00 4.49
4933 15252 1.405821 GACAGATGGACCTCTACGTGG 59.594 57.143 0.00 0.00 0.00 4.94
4934 15253 0.103208 CAGATGGACCTCTACGTGGC 59.897 60.000 0.00 0.00 0.00 5.01
4935 15254 1.043673 AGATGGACCTCTACGTGGCC 61.044 60.000 0.00 0.00 0.00 5.36
4936 15255 2.351336 GATGGACCTCTACGTGGCCG 62.351 65.000 0.00 0.00 40.83 6.13
4937 15256 3.834799 GGACCTCTACGTGGCCGG 61.835 72.222 0.00 0.00 38.78 6.13
4938 15257 3.066814 GACCTCTACGTGGCCGGT 61.067 66.667 11.42 11.42 38.78 5.28
4939 15258 3.352338 GACCTCTACGTGGCCGGTG 62.352 68.421 15.36 0.00 38.78 4.94
4940 15259 4.814294 CCTCTACGTGGCCGGTGC 62.814 72.222 1.90 0.00 38.78 5.01
4958 15277 3.541713 GCCGAGCCCAGGTAGGAG 61.542 72.222 0.00 0.00 41.22 3.69
4959 15278 2.840102 CCGAGCCCAGGTAGGAGG 60.840 72.222 0.00 0.00 41.22 4.30
4964 15283 2.042930 CCCAGGTAGGAGGGCCTT 59.957 66.667 7.89 0.00 43.90 4.35
4965 15284 1.619669 CCCAGGTAGGAGGGCCTTT 60.620 63.158 7.89 1.44 43.90 3.11
4966 15285 1.609783 CCAGGTAGGAGGGCCTTTG 59.390 63.158 7.89 0.00 43.90 2.77
4967 15286 1.609783 CAGGTAGGAGGGCCTTTGG 59.390 63.158 7.89 0.00 43.90 3.28
4968 15287 1.163555 AGGTAGGAGGGCCTTTGGT 59.836 57.895 7.89 0.00 43.90 3.67
4969 15288 0.914902 AGGTAGGAGGGCCTTTGGTC 60.915 60.000 7.89 0.00 43.90 4.02
4975 15294 4.295199 GGGCCTTTGGTCCCGGTT 62.295 66.667 0.84 0.00 42.67 4.44
4976 15295 2.989253 GGCCTTTGGTCCCGGTTG 60.989 66.667 0.00 0.00 0.00 3.77
4977 15296 2.989253 GCCTTTGGTCCCGGTTGG 60.989 66.667 0.00 0.00 0.00 3.77
4978 15297 2.518933 CCTTTGGTCCCGGTTGGT 59.481 61.111 0.00 0.00 34.77 3.67
4979 15298 1.901464 CCTTTGGTCCCGGTTGGTG 60.901 63.158 0.00 0.00 34.77 4.17
4980 15299 2.519780 TTTGGTCCCGGTTGGTGC 60.520 61.111 0.00 0.00 34.77 5.01
4981 15300 4.589675 TTGGTCCCGGTTGGTGCC 62.590 66.667 0.00 0.00 34.77 5.01
4996 15315 4.589675 GCCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
4997 15316 2.438795 CCACCAACCGGGACCAAT 59.561 61.111 6.32 0.00 41.15 3.16
4998 15317 1.686416 CCACCAACCGGGACCAATA 59.314 57.895 6.32 0.00 41.15 1.90
4999 15318 0.393808 CCACCAACCGGGACCAATAG 60.394 60.000 6.32 0.00 41.15 1.73
5000 15319 0.393808 CACCAACCGGGACCAATAGG 60.394 60.000 6.32 0.00 41.15 2.57
5001 15320 1.453197 CCAACCGGGACCAATAGGC 60.453 63.158 6.32 0.00 40.01 3.93
5002 15321 1.301623 CAACCGGGACCAATAGGCA 59.698 57.895 6.32 0.00 39.06 4.75
5003 15322 0.106719 CAACCGGGACCAATAGGCAT 60.107 55.000 6.32 0.00 39.06 4.40
5004 15323 0.182775 AACCGGGACCAATAGGCATC 59.817 55.000 6.32 0.00 39.06 3.91
5005 15324 1.073199 CCGGGACCAATAGGCATCC 59.927 63.158 0.00 0.00 39.06 3.51
5006 15325 1.705002 CCGGGACCAATAGGCATCCA 61.705 60.000 0.00 0.00 39.06 3.41
5007 15326 0.182537 CGGGACCAATAGGCATCCAA 59.817 55.000 0.00 0.00 39.06 3.53
5008 15327 1.815408 CGGGACCAATAGGCATCCAAG 60.815 57.143 0.00 0.00 39.06 3.61
5009 15328 1.322442 GGACCAATAGGCATCCAAGC 58.678 55.000 0.00 0.00 39.06 4.01
5010 15329 0.947244 GACCAATAGGCATCCAAGCG 59.053 55.000 0.00 0.00 39.06 4.68
5011 15330 1.103398 ACCAATAGGCATCCAAGCGC 61.103 55.000 0.00 0.00 39.06 5.92
5025 15344 3.830192 GCGCCAGCATTTCAGGGG 61.830 66.667 0.00 0.00 44.35 4.79
5026 15345 3.830192 CGCCAGCATTTCAGGGGC 61.830 66.667 0.00 0.00 41.20 5.80
5027 15346 2.363406 GCCAGCATTTCAGGGGCT 60.363 61.111 0.00 0.00 41.39 5.19
5030 15349 2.361771 AGCATTTCAGGGGCTGGG 59.638 61.111 0.00 0.00 36.34 4.45
5031 15350 2.761213 GCATTTCAGGGGCTGGGG 60.761 66.667 0.00 0.00 31.51 4.96
5032 15351 2.042639 CATTTCAGGGGCTGGGGG 60.043 66.667 0.00 0.00 31.51 5.40
5033 15352 2.537959 ATTTCAGGGGCTGGGGGT 60.538 61.111 0.00 0.00 31.51 4.95
5034 15353 2.176812 ATTTCAGGGGCTGGGGGTT 61.177 57.895 0.00 0.00 31.51 4.11
5035 15354 1.750087 ATTTCAGGGGCTGGGGGTTT 61.750 55.000 0.00 0.00 31.51 3.27
5036 15355 1.967343 TTTCAGGGGCTGGGGGTTTT 61.967 55.000 0.00 0.00 31.51 2.43
5037 15356 1.967343 TTCAGGGGCTGGGGGTTTTT 61.967 55.000 0.00 0.00 31.51 1.94
5067 15386 4.878987 GGGGGTTAGGGGTTTTGG 57.121 61.111 0.00 0.00 0.00 3.28
5068 15387 1.079621 GGGGGTTAGGGGTTTTGGG 59.920 63.158 0.00 0.00 0.00 4.12
5069 15388 1.079621 GGGGTTAGGGGTTTTGGGG 59.920 63.158 0.00 0.00 0.00 4.96
5070 15389 1.742737 GGGGTTAGGGGTTTTGGGGT 61.743 60.000 0.00 0.00 0.00 4.95
5071 15390 0.191563 GGGTTAGGGGTTTTGGGGTT 59.808 55.000 0.00 0.00 0.00 4.11
5072 15391 1.414831 GGGTTAGGGGTTTTGGGGTTT 60.415 52.381 0.00 0.00 0.00 3.27
5073 15392 2.158188 GGGTTAGGGGTTTTGGGGTTTA 60.158 50.000 0.00 0.00 0.00 2.01
5074 15393 3.585360 GGTTAGGGGTTTTGGGGTTTAA 58.415 45.455 0.00 0.00 0.00 1.52
5075 15394 4.169666 GGTTAGGGGTTTTGGGGTTTAAT 58.830 43.478 0.00 0.00 0.00 1.40
5076 15395 4.598373 GGTTAGGGGTTTTGGGGTTTAATT 59.402 41.667 0.00 0.00 0.00 1.40
5077 15396 5.073417 GGTTAGGGGTTTTGGGGTTTAATTT 59.927 40.000 0.00 0.00 0.00 1.82
5078 15397 6.271857 GGTTAGGGGTTTTGGGGTTTAATTTA 59.728 38.462 0.00 0.00 0.00 1.40
5079 15398 7.388437 GTTAGGGGTTTTGGGGTTTAATTTAG 58.612 38.462 0.00 0.00 0.00 1.85
5080 15399 4.847512 AGGGGTTTTGGGGTTTAATTTAGG 59.152 41.667 0.00 0.00 0.00 2.69
5081 15400 4.598373 GGGGTTTTGGGGTTTAATTTAGGT 59.402 41.667 0.00 0.00 0.00 3.08
5082 15401 5.513441 GGGGTTTTGGGGTTTAATTTAGGTG 60.513 44.000 0.00 0.00 0.00 4.00
5083 15402 5.072058 GGGTTTTGGGGTTTAATTTAGGTGT 59.928 40.000 0.00 0.00 0.00 4.16
5084 15403 6.409464 GGGTTTTGGGGTTTAATTTAGGTGTT 60.409 38.462 0.00 0.00 0.00 3.32
5085 15404 7.055378 GGTTTTGGGGTTTAATTTAGGTGTTT 58.945 34.615 0.00 0.00 0.00 2.83
5086 15405 7.227116 GGTTTTGGGGTTTAATTTAGGTGTTTC 59.773 37.037 0.00 0.00 0.00 2.78
5087 15406 7.433537 TTTGGGGTTTAATTTAGGTGTTTCA 57.566 32.000 0.00 0.00 0.00 2.69
5088 15407 7.619512 TTGGGGTTTAATTTAGGTGTTTCAT 57.380 32.000 0.00 0.00 0.00 2.57
5089 15408 8.722622 TTGGGGTTTAATTTAGGTGTTTCATA 57.277 30.769 0.00 0.00 0.00 2.15
5090 15409 8.903059 TGGGGTTTAATTTAGGTGTTTCATAT 57.097 30.769 0.00 0.00 0.00 1.78
5091 15410 9.992442 TGGGGTTTAATTTAGGTGTTTCATATA 57.008 29.630 0.00 0.00 0.00 0.86
5102 15421 9.899661 TTAGGTGTTTCATATATTGTGTTAGCT 57.100 29.630 0.00 0.00 0.00 3.32
5104 15423 9.547753 AGGTGTTTCATATATTGTGTTAGCTAG 57.452 33.333 0.00 0.00 0.00 3.42
5105 15424 8.283291 GGTGTTTCATATATTGTGTTAGCTAGC 58.717 37.037 6.62 6.62 0.00 3.42
5106 15425 9.046296 GTGTTTCATATATTGTGTTAGCTAGCT 57.954 33.333 23.12 23.12 0.00 3.32
5125 15444 9.362151 AGCTAGCTAATTAATAGAGAGAAGTGT 57.638 33.333 17.69 0.00 33.04 3.55
5126 15445 9.620660 GCTAGCTAATTAATAGAGAGAAGTGTC 57.379 37.037 7.70 0.00 33.04 3.67
5128 15447 8.776061 AGCTAATTAATAGAGAGAAGTGTCCT 57.224 34.615 0.00 0.00 33.04 3.85
5129 15448 8.856103 AGCTAATTAATAGAGAGAAGTGTCCTC 58.144 37.037 0.00 0.00 33.04 3.71
5130 15449 8.856103 GCTAATTAATAGAGAGAAGTGTCCTCT 58.144 37.037 0.00 0.00 43.16 3.69
5139 15458 4.953579 AGAGAAGTGTCCTCTCTTATGTCC 59.046 45.833 0.00 0.00 37.55 4.02
5140 15459 3.697045 AGAAGTGTCCTCTCTTATGTCCG 59.303 47.826 0.00 0.00 0.00 4.79
5141 15460 3.088789 AGTGTCCTCTCTTATGTCCGT 57.911 47.619 0.00 0.00 0.00 4.69
5142 15461 2.755655 AGTGTCCTCTCTTATGTCCGTG 59.244 50.000 0.00 0.00 0.00 4.94
5143 15462 1.476891 TGTCCTCTCTTATGTCCGTGC 59.523 52.381 0.00 0.00 0.00 5.34
5144 15463 1.751924 GTCCTCTCTTATGTCCGTGCT 59.248 52.381 0.00 0.00 0.00 4.40
5145 15464 2.166664 GTCCTCTCTTATGTCCGTGCTT 59.833 50.000 0.00 0.00 0.00 3.91
5146 15465 2.166459 TCCTCTCTTATGTCCGTGCTTG 59.834 50.000 0.00 0.00 0.00 4.01
5147 15466 2.544685 CTCTCTTATGTCCGTGCTTGG 58.455 52.381 0.00 0.00 0.00 3.61
5148 15467 2.166459 CTCTCTTATGTCCGTGCTTGGA 59.834 50.000 0.00 0.00 35.04 3.53
5156 15475 2.126618 CGTGCTTGGACGACGCTA 60.127 61.111 8.95 0.00 42.10 4.26
5157 15476 1.516386 CGTGCTTGGACGACGCTAT 60.516 57.895 8.95 0.00 42.10 2.97
5158 15477 0.248336 CGTGCTTGGACGACGCTATA 60.248 55.000 8.95 0.00 42.10 1.31
5159 15478 1.599667 CGTGCTTGGACGACGCTATAT 60.600 52.381 8.95 0.00 42.10 0.86
5160 15479 2.350102 CGTGCTTGGACGACGCTATATA 60.350 50.000 8.95 0.00 42.10 0.86
5161 15480 3.669824 CGTGCTTGGACGACGCTATATAT 60.670 47.826 8.95 0.00 42.10 0.86
5162 15481 4.436451 CGTGCTTGGACGACGCTATATATA 60.436 45.833 8.95 0.00 42.10 0.86
5163 15482 4.792189 GTGCTTGGACGACGCTATATATAC 59.208 45.833 0.00 0.00 0.00 1.47
5164 15483 4.027065 GCTTGGACGACGCTATATATACG 58.973 47.826 0.00 10.98 0.00 3.06
5165 15484 4.436584 GCTTGGACGACGCTATATATACGT 60.437 45.833 15.54 15.54 43.83 3.57
5166 15485 4.588805 TGGACGACGCTATATATACGTG 57.411 45.455 18.62 14.41 40.69 4.49
5167 15486 3.996363 TGGACGACGCTATATATACGTGT 59.004 43.478 18.62 16.34 40.69 4.49
5168 15487 5.167845 TGGACGACGCTATATATACGTGTA 58.832 41.667 18.62 0.00 40.69 2.90
5169 15488 5.812127 TGGACGACGCTATATATACGTGTAT 59.188 40.000 18.62 9.87 40.69 2.29
5170 15489 6.978080 TGGACGACGCTATATATACGTGTATA 59.022 38.462 18.62 13.54 40.69 1.47
5171 15490 7.653311 TGGACGACGCTATATATACGTGTATAT 59.347 37.037 23.11 23.11 40.69 0.86
5172 15491 9.129209 GGACGACGCTATATATACGTGTATATA 57.871 37.037 22.93 22.93 42.11 0.86
5174 15493 9.899226 ACGACGCTATATATACGTGTATATAGA 57.101 33.333 37.69 20.47 43.75 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 76 3.125376 GCCCCGGCTCATCTCCATT 62.125 63.158 0.00 0.00 38.26 3.16
75 77 3.564218 GCCCCGGCTCATCTCCAT 61.564 66.667 0.00 0.00 38.26 3.41
126 129 8.079809 AGGAACCTTACGTATGTTTGAATTTTG 58.920 33.333 11.06 0.00 0.00 2.44
136 139 4.159879 CAGGAAGAGGAACCTTACGTATGT 59.840 45.833 0.00 0.00 33.91 2.29
137 140 4.159879 ACAGGAAGAGGAACCTTACGTATG 59.840 45.833 0.00 0.00 33.91 2.39
139 142 3.760684 GACAGGAAGAGGAACCTTACGTA 59.239 47.826 0.00 0.00 33.91 3.57
140 143 2.561858 GACAGGAAGAGGAACCTTACGT 59.438 50.000 0.00 0.00 33.91 3.57
141 144 2.561419 TGACAGGAAGAGGAACCTTACG 59.439 50.000 0.00 0.00 33.91 3.18
151 154 5.476091 AGAGTTTTACCTGACAGGAAGAG 57.524 43.478 28.56 0.97 37.67 2.85
159 162 6.426025 ACGGTTGATAAAGAGTTTTACCTGAC 59.574 38.462 0.00 0.00 31.90 3.51
160 163 6.527423 ACGGTTGATAAAGAGTTTTACCTGA 58.473 36.000 0.00 0.00 31.90 3.86
204 208 2.546789 GACGAAACAAATCGGTGAAGGT 59.453 45.455 1.59 0.00 46.82 3.50
241 245 1.132262 GCGGTCAATTATGGTGTGGTG 59.868 52.381 0.00 0.00 0.00 4.17
253 257 1.546589 TACGGGAAGGTGCGGTCAAT 61.547 55.000 0.00 0.00 0.00 2.57
261 265 2.277591 TGGGACGTACGGGAAGGTG 61.278 63.158 21.06 0.00 0.00 4.00
275 279 4.269183 AGTTAATTGATGCGATTGTGGGA 58.731 39.130 0.00 0.00 0.00 4.37
285 289 6.089954 GGTGCAAAAGAGAAGTTAATTGATGC 59.910 38.462 0.00 0.00 0.00 3.91
289 293 5.691754 GGTGGTGCAAAAGAGAAGTTAATTG 59.308 40.000 0.00 0.00 0.00 2.32
299 303 3.431055 TGCGGTGGTGCAAAAGAG 58.569 55.556 0.00 0.00 43.02 2.85
390 434 9.028185 CGTGGAGTACTACTTAAATTATGGAAC 57.972 37.037 6.66 0.00 0.00 3.62
410 454 1.129251 GTGTCATGCATTGTCGTGGAG 59.871 52.381 0.00 0.00 0.00 3.86
411 455 1.155889 GTGTCATGCATTGTCGTGGA 58.844 50.000 0.00 0.00 0.00 4.02
413 457 2.476686 GGATGTGTCATGCATTGTCGTG 60.477 50.000 0.00 0.00 0.00 4.35
414 458 1.739466 GGATGTGTCATGCATTGTCGT 59.261 47.619 0.00 0.00 0.00 4.34
415 459 1.064505 GGGATGTGTCATGCATTGTCG 59.935 52.381 0.00 0.00 0.00 4.35
416 460 2.093890 TGGGATGTGTCATGCATTGTC 58.906 47.619 0.00 0.00 0.00 3.18
419 463 2.812836 TCTGGGATGTGTCATGCATT 57.187 45.000 0.00 0.00 0.00 3.56
448 492 9.936759 CAACAAATAACCTAAACATACCCAAAT 57.063 29.630 0.00 0.00 0.00 2.32
449 493 8.925338 ACAACAAATAACCTAAACATACCCAAA 58.075 29.630 0.00 0.00 0.00 3.28
450 494 8.480133 ACAACAAATAACCTAAACATACCCAA 57.520 30.769 0.00 0.00 0.00 4.12
452 496 9.012161 TGTACAACAAATAACCTAAACATACCC 57.988 33.333 0.00 0.00 0.00 3.69
457 1157 7.551035 ACGTGTACAACAAATAACCTAAACA 57.449 32.000 0.00 0.00 0.00 2.83
504 1204 6.240894 GGCATGATCTCCTAATTCCATAACA 58.759 40.000 0.00 0.00 0.00 2.41
512 1212 4.288105 AGATTCGGGCATGATCTCCTAATT 59.712 41.667 0.00 0.00 0.00 1.40
578 1278 9.372189 TGAGAAGAAGGAGATATATGAATCACA 57.628 33.333 0.00 0.00 0.00 3.58
604 1304 3.526534 GCTTCTTCGGCTAAGTCAGAAT 58.473 45.455 0.00 0.00 36.51 2.40
607 1307 1.066858 TGGCTTCTTCGGCTAAGTCAG 60.067 52.381 0.00 0.00 32.62 3.51
616 1687 1.919956 CTGCAGCTTGGCTTCTTCGG 61.920 60.000 0.00 0.00 36.40 4.30
638 1709 0.608130 CCTGTCAGGATTGTCGTGGA 59.392 55.000 14.26 0.00 37.67 4.02
753 1835 3.590466 ATGCACCTTGCCACTCCCC 62.590 63.158 0.00 0.00 44.23 4.81
950 3119 1.893801 GTGCAGGGTGTACTCAGTACT 59.106 52.381 16.09 0.00 39.49 2.73
953 3122 0.681733 CTGTGCAGGGTGTACTCAGT 59.318 55.000 0.00 0.00 33.97 3.41
954 3123 0.969149 TCTGTGCAGGGTGTACTCAG 59.031 55.000 0.00 0.00 33.97 3.35
955 3124 1.644509 ATCTGTGCAGGGTGTACTCA 58.355 50.000 0.00 0.00 33.97 3.41
956 3125 2.744202 CAAATCTGTGCAGGGTGTACTC 59.256 50.000 0.00 0.00 33.97 2.59
957 3126 2.553028 CCAAATCTGTGCAGGGTGTACT 60.553 50.000 0.00 0.00 33.97 2.73
958 3127 1.812571 CCAAATCTGTGCAGGGTGTAC 59.187 52.381 0.00 0.00 33.42 2.90
959 3128 1.702401 TCCAAATCTGTGCAGGGTGTA 59.298 47.619 0.00 0.00 0.00 2.90
960 3129 0.478072 TCCAAATCTGTGCAGGGTGT 59.522 50.000 0.00 0.00 0.00 4.16
961 3130 1.171308 CTCCAAATCTGTGCAGGGTG 58.829 55.000 0.00 0.00 0.00 4.61
962 3131 0.610232 GCTCCAAATCTGTGCAGGGT 60.610 55.000 0.00 0.00 0.00 4.34
963 3132 0.323178 AGCTCCAAATCTGTGCAGGG 60.323 55.000 0.00 0.00 0.00 4.45
964 3133 2.286872 CTAGCTCCAAATCTGTGCAGG 58.713 52.381 0.00 0.00 0.00 4.85
965 3134 2.286872 CCTAGCTCCAAATCTGTGCAG 58.713 52.381 0.00 0.00 0.00 4.41
966 3135 1.679944 GCCTAGCTCCAAATCTGTGCA 60.680 52.381 0.00 0.00 0.00 4.57
967 3136 1.020437 GCCTAGCTCCAAATCTGTGC 58.980 55.000 0.00 0.00 0.00 4.57
968 3137 2.286872 CTGCCTAGCTCCAAATCTGTG 58.713 52.381 0.00 0.00 0.00 3.66
988 3157 2.034305 CCATTTCCATGAAGCAGCTAGC 59.966 50.000 6.62 6.62 36.53 3.42
1000 3209 0.894835 GTTCGGTTGGCCATTTCCAT 59.105 50.000 6.09 0.00 35.77 3.41
1053 3262 1.550976 AGCAGGTAGTTGAGCAGGTAC 59.449 52.381 0.00 0.00 0.00 3.34
1067 3279 0.401105 ATCCAGGAGCCATAGCAGGT 60.401 55.000 0.00 0.00 43.56 4.00
1094 3306 8.700051 TCTGATACTAGGAGAAGAGAAAAATGG 58.300 37.037 0.00 0.00 0.00 3.16
1110 3322 6.347240 GCGATGGAGCAAATTTCTGATACTAG 60.347 42.308 0.00 0.00 37.05 2.57
1141 3353 3.562557 ACCACACAAAAACTATGGACGTC 59.437 43.478 7.13 7.13 34.38 4.34
1252 3464 1.514678 GCCACTTGTCGTCATTGGCA 61.515 55.000 22.44 0.00 45.14 4.92
1256 3468 2.146342 CTGAAGCCACTTGTCGTCATT 58.854 47.619 0.00 0.00 0.00 2.57
1265 3480 0.037232 GCTACGGACTGAAGCCACTT 60.037 55.000 0.00 0.00 0.00 3.16
1266 3481 0.900647 AGCTACGGACTGAAGCCACT 60.901 55.000 0.00 0.00 36.92 4.00
1282 3497 0.246635 ATACGTTGAACTCCGCAGCT 59.753 50.000 0.00 0.00 0.00 4.24
1429 3644 1.671742 GGCGGTGAAGAGGAAGTGA 59.328 57.895 0.00 0.00 0.00 3.41
1454 3669 3.767230 CACGTCGTGCTGCTTCGG 61.767 66.667 13.22 5.63 0.00 4.30
1652 3873 1.217244 GAACACCGACTATGGGCGT 59.783 57.895 2.79 0.00 0.00 5.68
1728 3957 5.164620 TGGTATCAGAATGCTCTTGACAA 57.835 39.130 0.00 0.00 34.76 3.18
1734 3963 5.742546 GCTCAGATTGGTATCAGAATGCTCT 60.743 44.000 0.00 0.00 34.76 4.09
1743 3972 4.160642 AGCATTGCTCAGATTGGTATCA 57.839 40.909 5.03 0.00 30.62 2.15
1798 4031 5.360999 GGTCAAATTATCCCAGCTAAGCTTT 59.639 40.000 3.20 0.00 36.40 3.51
1882 6056 1.325476 ACCGATCCTGGACCGTAACC 61.325 60.000 10.07 0.00 0.00 2.85
1885 6059 0.839277 TCTACCGATCCTGGACCGTA 59.161 55.000 10.07 4.65 0.00 4.02
1917 6137 2.181525 CGAAAATTGCAGCCCGGG 59.818 61.111 19.09 19.09 0.00 5.73
1959 6179 2.104859 GCGGCTCGGTTAAAGACCC 61.105 63.158 0.00 0.00 46.35 4.46
1991 6213 0.519961 GCGGCGGTGACTATGTTTTT 59.480 50.000 9.78 0.00 0.00 1.94
2065 6288 1.045911 GGATGAGAGGGGAAGCTCGT 61.046 60.000 0.00 0.00 33.89 4.18
2100 6324 0.533755 GTCAAGAGGCTATGGCGCAT 60.534 55.000 10.83 3.40 39.81 4.73
2159 6383 3.912496 TTCCATGGTCGAGAACATCAT 57.088 42.857 12.58 0.00 36.41 2.45
2163 6387 1.822371 TCGATTCCATGGTCGAGAACA 59.178 47.619 20.22 1.89 41.44 3.18
2290 6519 0.608640 ACCTTCAGAGCGTTCGGATT 59.391 50.000 2.61 0.00 0.00 3.01
2369 6617 6.264909 ACACTAACGAAACTAACGAAACTG 57.735 37.500 0.00 0.00 34.70 3.16
2387 6644 6.432581 TCTCCTATTGCTCCTTCTTACACTA 58.567 40.000 0.00 0.00 0.00 2.74
2438 6695 6.920817 TCTCTGTACATTTGTAACACTCGAT 58.079 36.000 0.00 0.00 31.52 3.59
2532 6791 6.157904 CAGTCCTAGTCTCTATTGCATGATG 58.842 44.000 0.00 0.00 0.00 3.07
2541 6809 6.464180 CCGTAACTACCAGTCCTAGTCTCTAT 60.464 46.154 0.00 0.00 0.00 1.98
2572 6840 4.850680 ACCAACGTATCTCTCTCTCTCTT 58.149 43.478 0.00 0.00 0.00 2.85
2585 6853 4.274950 CCTGTTGAAACTGAACCAACGTAT 59.725 41.667 0.00 0.00 42.06 3.06
2651 6919 3.782046 ACGTGCACGAGAAATTAGCTAT 58.218 40.909 42.94 15.22 43.02 2.97
2878 7162 3.562779 GAGCCGTCGTTTGGACCGA 62.563 63.158 0.00 0.00 42.99 4.69
2936 7220 4.036262 CACACTGATTTCTTCCGGTCAAAA 59.964 41.667 0.00 0.55 0.00 2.44
2937 7221 3.563808 CACACTGATTTCTTCCGGTCAAA 59.436 43.478 0.00 0.00 0.00 2.69
2938 7222 3.138304 CACACTGATTTCTTCCGGTCAA 58.862 45.455 0.00 0.00 0.00 3.18
2939 7223 2.367241 TCACACTGATTTCTTCCGGTCA 59.633 45.455 0.00 0.00 0.00 4.02
2940 7224 2.996621 CTCACACTGATTTCTTCCGGTC 59.003 50.000 0.00 0.00 0.00 4.79
2941 7225 2.289694 CCTCACACTGATTTCTTCCGGT 60.290 50.000 0.00 0.00 0.00 5.28
2942 7226 2.350522 CCTCACACTGATTTCTTCCGG 58.649 52.381 0.00 0.00 0.00 5.14
2943 7227 2.350522 CCCTCACACTGATTTCTTCCG 58.649 52.381 0.00 0.00 0.00 4.30
2946 7230 1.272147 GGGCCCTCACACTGATTTCTT 60.272 52.381 17.04 0.00 0.00 2.52
2964 7248 0.325484 TGAATTTCAGGGGCCATGGG 60.325 55.000 19.39 0.00 0.00 4.00
2966 7250 2.029623 CTCTGAATTTCAGGGGCCATG 58.970 52.381 22.86 12.97 41.25 3.66
2967 7251 2.449137 CTCTGAATTTCAGGGGCCAT 57.551 50.000 22.86 0.00 41.25 4.40
2968 7252 3.985410 CTCTGAATTTCAGGGGCCA 57.015 52.632 22.86 5.73 41.25 5.36
2972 7256 2.092375 GGTACCCCTCTGAATTTCAGGG 60.092 54.545 22.86 20.44 44.51 4.45
2973 7257 2.846827 AGGTACCCCTCTGAATTTCAGG 59.153 50.000 22.86 14.60 44.39 3.86
2985 7269 6.903340 ATATTTTGTTACAGAGGTACCCCT 57.097 37.500 8.74 0.00 46.66 4.79
2986 7270 8.488668 TCTAATATTTTGTTACAGAGGTACCCC 58.511 37.037 8.74 0.00 0.00 4.95
2987 7271 9.322773 GTCTAATATTTTGTTACAGAGGTACCC 57.677 37.037 8.74 0.00 0.00 3.69
2988 7272 9.880157 TGTCTAATATTTTGTTACAGAGGTACC 57.120 33.333 2.73 2.73 0.00 3.34
3060 7344 4.202388 ACCCGCAAAAGAAAACTACCTCTA 60.202 41.667 0.00 0.00 0.00 2.43
3254 7538 2.630098 CCACTCTCAAGTCTCAACCAGA 59.370 50.000 0.00 0.00 31.71 3.86
3259 8725 4.963318 AATCACCACTCTCAAGTCTCAA 57.037 40.909 0.00 0.00 31.71 3.02
3260 8726 5.080337 ACTAATCACCACTCTCAAGTCTCA 58.920 41.667 0.00 0.00 31.71 3.27
3261 8727 5.652994 ACTAATCACCACTCTCAAGTCTC 57.347 43.478 0.00 0.00 31.71 3.36
3262 8728 7.726033 AATACTAATCACCACTCTCAAGTCT 57.274 36.000 0.00 0.00 31.71 3.24
3263 8729 9.522804 CTAAATACTAATCACCACTCTCAAGTC 57.477 37.037 0.00 0.00 31.71 3.01
3264 8730 8.478877 CCTAAATACTAATCACCACTCTCAAGT 58.521 37.037 0.00 0.00 35.60 3.16
3265 8731 8.696374 TCCTAAATACTAATCACCACTCTCAAG 58.304 37.037 0.00 0.00 0.00 3.02
3283 8749 8.867097 CAACCCTAATACTGTAGCTCCTAAATA 58.133 37.037 0.00 0.00 0.00 1.40
3314 8780 3.873801 GCAGTCCAACTATCCCATGTTGT 60.874 47.826 0.00 0.00 41.16 3.32
3316 8782 2.578021 AGCAGTCCAACTATCCCATGTT 59.422 45.455 0.00 0.00 0.00 2.71
3324 8790 3.119316 CGAGTCAGAAGCAGTCCAACTAT 60.119 47.826 0.00 0.00 0.00 2.12
3342 8808 1.292992 GTTGTTTGGACCGTTCGAGT 58.707 50.000 0.00 0.00 0.00 4.18
3346 8812 1.817609 CAACGTTGTTTGGACCGTTC 58.182 50.000 20.21 0.00 41.14 3.95
3414 10103 3.633065 GCTACCTCATAGGAGTCGAGTTT 59.367 47.826 3.36 0.00 37.67 2.66
3420 10109 4.402829 TGATCTGCTACCTCATAGGAGTC 58.597 47.826 3.36 0.00 46.70 3.36
3581 10271 0.447801 GCGCCTGTCCTGTAACAATG 59.552 55.000 0.00 0.00 0.00 2.82
3749 12036 5.545658 AATGTAGGTGTGTTGCTATTTCG 57.454 39.130 0.00 0.00 0.00 3.46
3823 12110 6.429385 GGGTTATGAGATATGAAAGAAGCTGG 59.571 42.308 0.00 0.00 0.00 4.85
3826 12113 7.148507 CGATGGGTTATGAGATATGAAAGAAGC 60.149 40.741 0.00 0.00 0.00 3.86
3912 12199 2.434331 CCAGTTTTCGGGCCCAGA 59.566 61.111 24.92 17.49 0.00 3.86
4150 12445 4.985538 AGTGTTCCAACCATCACAGTAAT 58.014 39.130 0.00 0.00 33.84 1.89
4270 12569 9.913041 CCTACAGGAGTAAGACCGTTAGGGTTA 62.913 48.148 0.00 0.00 44.02 2.85
4272 12571 7.853645 CCTACAGGAGTAAGACCGTTAGGGT 62.854 52.000 0.00 0.00 45.93 4.34
4273 12572 2.454538 ACAGGAGTAAGACCGTTAGGG 58.545 52.381 0.00 0.00 43.47 3.53
4274 12573 3.631227 CCTACAGGAGTAAGACCGTTAGG 59.369 52.174 0.00 0.00 39.86 2.69
4433 12742 6.428083 TTGGTGTCTACTTTACTTCATCCA 57.572 37.500 0.00 0.00 0.00 3.41
4454 13114 9.796120 TTGTTTGACTATTAACCAAGAAGTTTG 57.204 29.630 0.00 0.00 0.00 2.93
4457 13117 9.965824 CATTTGTTTGACTATTAACCAAGAAGT 57.034 29.630 0.00 0.00 0.00 3.01
4492 13158 8.522003 ACAAAATTTTCAAAGGAATGCAAAAGT 58.478 25.926 0.00 0.00 31.93 2.66
4708 13383 5.104776 ACGATGAAGAAAATCTGGGATCTCA 60.105 40.000 0.00 0.00 0.00 3.27
4765 15084 4.069232 GGCTCCCAAAAAGGCCGC 62.069 66.667 0.00 0.00 35.08 6.53
4806 15125 1.635663 CCGAGAAAGCCAACGCGAAT 61.636 55.000 15.93 0.00 41.18 3.34
4869 15188 4.023980 ACTAAAGGCCCTTATCAAAAGGC 58.976 43.478 0.00 0.00 44.99 4.35
4870 15189 4.645136 GGACTAAAGGCCCTTATCAAAAGG 59.355 45.833 0.00 0.00 37.17 3.11
4871 15190 4.645136 GGGACTAAAGGCCCTTATCAAAAG 59.355 45.833 14.19 0.00 41.31 2.27
4872 15191 4.606210 GGGACTAAAGGCCCTTATCAAAA 58.394 43.478 14.19 0.00 41.31 2.44
4873 15192 3.371166 CGGGACTAAAGGCCCTTATCAAA 60.371 47.826 18.97 0.00 42.40 2.69
4874 15193 2.171870 CGGGACTAAAGGCCCTTATCAA 59.828 50.000 18.97 0.00 42.40 2.57
4875 15194 1.766496 CGGGACTAAAGGCCCTTATCA 59.234 52.381 18.97 0.00 42.40 2.15
4876 15195 1.071857 CCGGGACTAAAGGCCCTTATC 59.928 57.143 18.97 0.00 42.40 1.75
4877 15196 1.137697 CCGGGACTAAAGGCCCTTAT 58.862 55.000 18.97 0.00 42.40 1.73
4878 15197 0.252835 ACCGGGACTAAAGGCCCTTA 60.253 55.000 18.97 0.00 42.40 2.69
4879 15198 1.138228 AACCGGGACTAAAGGCCCTT 61.138 55.000 18.97 4.45 42.40 3.95
4880 15199 1.540617 AACCGGGACTAAAGGCCCT 60.541 57.895 18.97 0.00 42.40 5.19
4881 15200 1.378119 CAACCGGGACTAAAGGCCC 60.378 63.158 11.29 11.29 41.11 5.80
4882 15201 0.251033 AACAACCGGGACTAAAGGCC 60.251 55.000 6.32 0.00 0.00 5.19
4883 15202 2.079158 GTAACAACCGGGACTAAAGGC 58.921 52.381 6.32 0.00 0.00 4.35
4884 15203 3.069289 GTGTAACAACCGGGACTAAAGG 58.931 50.000 6.32 0.00 36.32 3.11
4885 15204 2.733026 CGTGTAACAACCGGGACTAAAG 59.267 50.000 6.32 0.00 35.74 1.85
4886 15205 2.363680 TCGTGTAACAACCGGGACTAAA 59.636 45.455 6.32 0.00 35.74 1.85
4887 15206 1.959985 TCGTGTAACAACCGGGACTAA 59.040 47.619 6.32 0.00 35.74 2.24
4888 15207 1.614996 TCGTGTAACAACCGGGACTA 58.385 50.000 6.32 0.00 35.74 2.59
4889 15208 0.752054 TTCGTGTAACAACCGGGACT 59.248 50.000 6.32 0.00 35.74 3.85
4890 15209 1.728425 GATTCGTGTAACAACCGGGAC 59.272 52.381 6.32 0.00 35.74 4.46
4891 15210 1.669502 CGATTCGTGTAACAACCGGGA 60.670 52.381 6.32 0.00 35.74 5.14
4892 15211 0.717224 CGATTCGTGTAACAACCGGG 59.283 55.000 6.32 0.00 35.74 5.73
4893 15212 0.717224 CCGATTCGTGTAACAACCGG 59.283 55.000 0.00 0.00 35.74 5.28
4894 15213 0.717224 CCCGATTCGTGTAACAACCG 59.283 55.000 5.20 0.00 35.74 4.44
4895 15214 1.728425 GTCCCGATTCGTGTAACAACC 59.272 52.381 5.20 0.00 35.74 3.77
4896 15215 2.406130 TGTCCCGATTCGTGTAACAAC 58.594 47.619 5.20 0.00 35.74 3.32
4897 15216 2.296752 TCTGTCCCGATTCGTGTAACAA 59.703 45.455 5.20 0.00 35.74 2.83
4898 15217 1.887854 TCTGTCCCGATTCGTGTAACA 59.112 47.619 5.20 3.17 35.74 2.41
4899 15218 2.642139 TCTGTCCCGATTCGTGTAAC 57.358 50.000 5.20 0.00 0.00 2.50
4900 15219 2.159156 CCATCTGTCCCGATTCGTGTAA 60.159 50.000 5.20 0.00 0.00 2.41
4901 15220 1.407618 CCATCTGTCCCGATTCGTGTA 59.592 52.381 5.20 0.00 0.00 2.90
4902 15221 0.175760 CCATCTGTCCCGATTCGTGT 59.824 55.000 5.20 0.00 0.00 4.49
4903 15222 0.459899 TCCATCTGTCCCGATTCGTG 59.540 55.000 5.20 0.00 0.00 4.35
4904 15223 0.460311 GTCCATCTGTCCCGATTCGT 59.540 55.000 5.20 0.00 0.00 3.85
4905 15224 0.249489 GGTCCATCTGTCCCGATTCG 60.249 60.000 0.00 0.00 0.00 3.34
4906 15225 1.069358 GAGGTCCATCTGTCCCGATTC 59.931 57.143 0.00 0.00 0.00 2.52
4907 15226 1.123928 GAGGTCCATCTGTCCCGATT 58.876 55.000 0.00 0.00 0.00 3.34
4908 15227 0.263172 AGAGGTCCATCTGTCCCGAT 59.737 55.000 0.00 0.00 0.00 4.18
4909 15228 0.924090 TAGAGGTCCATCTGTCCCGA 59.076 55.000 0.00 0.00 0.00 5.14
4910 15229 1.033574 GTAGAGGTCCATCTGTCCCG 58.966 60.000 0.00 0.00 0.00 5.14
4911 15230 1.033574 CGTAGAGGTCCATCTGTCCC 58.966 60.000 0.00 0.00 0.00 4.46
4912 15231 1.405821 CACGTAGAGGTCCATCTGTCC 59.594 57.143 0.00 0.00 0.00 4.02
4913 15232 1.405821 CCACGTAGAGGTCCATCTGTC 59.594 57.143 0.00 0.00 32.16 3.51
4914 15233 1.475403 CCACGTAGAGGTCCATCTGT 58.525 55.000 0.00 0.00 32.16 3.41
4915 15234 0.103208 GCCACGTAGAGGTCCATCTG 59.897 60.000 0.00 0.00 41.49 2.90
4916 15235 1.043673 GGCCACGTAGAGGTCCATCT 61.044 60.000 0.00 0.00 41.49 2.90
4917 15236 1.442148 GGCCACGTAGAGGTCCATC 59.558 63.158 0.00 0.00 41.49 3.51
4918 15237 2.423898 CGGCCACGTAGAGGTCCAT 61.424 63.158 2.24 0.00 40.64 3.41
4919 15238 3.066190 CGGCCACGTAGAGGTCCA 61.066 66.667 2.24 0.00 40.64 4.02
4920 15239 3.834799 CCGGCCACGTAGAGGTCC 61.835 72.222 2.24 0.00 40.64 4.46
4921 15240 3.066814 ACCGGCCACGTAGAGGTC 61.067 66.667 0.00 0.00 41.49 3.85
4922 15241 3.379445 CACCGGCCACGTAGAGGT 61.379 66.667 0.00 0.00 41.49 3.85
4923 15242 4.814294 GCACCGGCCACGTAGAGG 62.814 72.222 0.00 0.00 42.66 3.69
4941 15260 3.541713 CTCCTACCTGGGCTCGGC 61.542 72.222 0.00 0.00 36.20 5.54
4942 15261 2.840102 CCTCCTACCTGGGCTCGG 60.840 72.222 0.00 0.00 36.20 4.63
4943 15262 2.840102 CCCTCCTACCTGGGCTCG 60.840 72.222 0.00 0.00 36.61 5.03
4947 15266 1.619669 AAAGGCCCTCCTACCTGGG 60.620 63.158 0.00 0.00 43.40 4.45
4948 15267 1.609783 CAAAGGCCCTCCTACCTGG 59.390 63.158 0.00 0.00 43.40 4.45
4949 15268 1.208165 ACCAAAGGCCCTCCTACCTG 61.208 60.000 0.00 0.00 43.40 4.00
4950 15269 0.914902 GACCAAAGGCCCTCCTACCT 60.915 60.000 0.00 0.00 43.40 3.08
4951 15270 1.608154 GACCAAAGGCCCTCCTACC 59.392 63.158 0.00 0.00 43.40 3.18
4952 15271 1.608154 GGACCAAAGGCCCTCCTAC 59.392 63.158 0.00 0.00 43.40 3.18
4953 15272 1.618447 GGGACCAAAGGCCCTCCTA 60.618 63.158 0.00 0.00 43.40 2.94
4955 15274 4.426313 CGGGACCAAAGGCCCTCC 62.426 72.222 0.00 0.00 37.05 4.30
4956 15275 4.426313 CCGGGACCAAAGGCCCTC 62.426 72.222 0.00 0.00 37.05 4.30
4958 15277 4.295199 AACCGGGACCAAAGGCCC 62.295 66.667 6.32 0.00 36.26 5.80
4959 15278 2.989253 CAACCGGGACCAAAGGCC 60.989 66.667 6.32 0.00 0.00 5.19
4960 15279 2.989253 CCAACCGGGACCAAAGGC 60.989 66.667 6.32 0.00 40.01 4.35
4961 15280 1.901464 CACCAACCGGGACCAAAGG 60.901 63.158 6.32 0.00 41.15 3.11
4962 15281 2.561037 GCACCAACCGGGACCAAAG 61.561 63.158 6.32 0.00 41.15 2.77
4963 15282 2.519780 GCACCAACCGGGACCAAA 60.520 61.111 6.32 0.00 41.15 3.28
4964 15283 4.589675 GGCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
4979 15298 2.487274 TATTGGTCCCGGTTGGTGGC 62.487 60.000 0.00 0.00 34.77 5.01
4980 15299 0.393808 CTATTGGTCCCGGTTGGTGG 60.394 60.000 0.00 0.00 34.77 4.61
4981 15300 0.393808 CCTATTGGTCCCGGTTGGTG 60.394 60.000 0.00 0.00 34.77 4.17
4982 15301 1.996086 CCTATTGGTCCCGGTTGGT 59.004 57.895 0.00 0.00 34.77 3.67
4983 15302 1.453197 GCCTATTGGTCCCGGTTGG 60.453 63.158 0.00 0.00 35.27 3.77
4984 15303 0.106719 ATGCCTATTGGTCCCGGTTG 60.107 55.000 0.00 0.00 35.27 3.77
4985 15304 0.182775 GATGCCTATTGGTCCCGGTT 59.817 55.000 0.00 0.00 35.27 4.44
4986 15305 1.705997 GGATGCCTATTGGTCCCGGT 61.706 60.000 0.00 0.00 35.27 5.28
4987 15306 1.073199 GGATGCCTATTGGTCCCGG 59.927 63.158 0.00 0.00 35.27 5.73
4988 15307 0.182537 TTGGATGCCTATTGGTCCCG 59.817 55.000 1.28 0.00 35.27 5.14
4989 15308 1.986882 CTTGGATGCCTATTGGTCCC 58.013 55.000 1.28 0.00 35.27 4.46
4990 15309 1.322442 GCTTGGATGCCTATTGGTCC 58.678 55.000 0.00 0.00 35.27 4.46
4991 15310 0.947244 CGCTTGGATGCCTATTGGTC 59.053 55.000 0.00 0.00 35.27 4.02
4992 15311 1.103398 GCGCTTGGATGCCTATTGGT 61.103 55.000 0.00 0.00 35.27 3.67
4993 15312 1.656441 GCGCTTGGATGCCTATTGG 59.344 57.895 0.00 0.00 0.00 3.16
5000 15319 2.567564 AAATGCTGGCGCTTGGATGC 62.568 55.000 7.64 3.67 36.97 3.91
5001 15320 0.526954 GAAATGCTGGCGCTTGGATG 60.527 55.000 7.64 0.00 36.97 3.51
5002 15321 0.966875 TGAAATGCTGGCGCTTGGAT 60.967 50.000 7.64 4.20 36.97 3.41
5003 15322 1.588824 CTGAAATGCTGGCGCTTGGA 61.589 55.000 7.64 1.48 36.97 3.53
5004 15323 1.153901 CTGAAATGCTGGCGCTTGG 60.154 57.895 7.64 0.00 36.97 3.61
5005 15324 1.153901 CCTGAAATGCTGGCGCTTG 60.154 57.895 7.64 0.90 36.97 4.01
5006 15325 2.345760 CCCTGAAATGCTGGCGCTT 61.346 57.895 7.64 0.00 36.97 4.68
5007 15326 2.753043 CCCTGAAATGCTGGCGCT 60.753 61.111 7.64 0.00 36.97 5.92
5008 15327 3.830192 CCCCTGAAATGCTGGCGC 61.830 66.667 0.00 0.00 34.47 6.53
5009 15328 3.830192 GCCCCTGAAATGCTGGCG 61.830 66.667 0.00 0.00 34.47 5.69
5010 15329 2.363406 AGCCCCTGAAATGCTGGC 60.363 61.111 0.00 0.00 42.48 4.85
5011 15330 3.612251 CAGCCCCTGAAATGCTGG 58.388 61.111 2.89 0.00 46.71 4.85
5013 15332 2.361771 CCCAGCCCCTGAAATGCT 59.638 61.111 0.00 0.00 32.44 3.79
5014 15333 2.761213 CCCCAGCCCCTGAAATGC 60.761 66.667 0.00 0.00 32.44 3.56
5015 15334 2.042639 CCCCCAGCCCCTGAAATG 60.043 66.667 0.00 0.00 32.44 2.32
5016 15335 1.750087 AAACCCCCAGCCCCTGAAAT 61.750 55.000 0.00 0.00 32.44 2.17
5017 15336 1.967343 AAAACCCCCAGCCCCTGAAA 61.967 55.000 0.00 0.00 32.44 2.69
5018 15337 1.967343 AAAAACCCCCAGCCCCTGAA 61.967 55.000 0.00 0.00 32.44 3.02
5019 15338 2.408203 AAAAACCCCCAGCCCCTGA 61.408 57.895 0.00 0.00 32.44 3.86
5020 15339 2.204034 AAAAACCCCCAGCCCCTG 59.796 61.111 0.00 0.00 0.00 4.45
5050 15369 1.079621 CCCAAAACCCCTAACCCCC 59.920 63.158 0.00 0.00 0.00 5.40
5051 15370 1.079621 CCCCAAAACCCCTAACCCC 59.920 63.158 0.00 0.00 0.00 4.95
5052 15371 0.191563 AACCCCAAAACCCCTAACCC 59.808 55.000 0.00 0.00 0.00 4.11
5053 15372 2.106187 AAACCCCAAAACCCCTAACC 57.894 50.000 0.00 0.00 0.00 2.85
5054 15373 5.829062 AATTAAACCCCAAAACCCCTAAC 57.171 39.130 0.00 0.00 0.00 2.34
5055 15374 6.501102 CCTAAATTAAACCCCAAAACCCCTAA 59.499 38.462 0.00 0.00 0.00 2.69
5056 15375 6.024247 CCTAAATTAAACCCCAAAACCCCTA 58.976 40.000 0.00 0.00 0.00 3.53
5057 15376 4.847512 CCTAAATTAAACCCCAAAACCCCT 59.152 41.667 0.00 0.00 0.00 4.79
5058 15377 4.598373 ACCTAAATTAAACCCCAAAACCCC 59.402 41.667 0.00 0.00 0.00 4.95
5059 15378 5.072058 ACACCTAAATTAAACCCCAAAACCC 59.928 40.000 0.00 0.00 0.00 4.11
5060 15379 6.177310 ACACCTAAATTAAACCCCAAAACC 57.823 37.500 0.00 0.00 0.00 3.27
5061 15380 7.769507 TGAAACACCTAAATTAAACCCCAAAAC 59.230 33.333 0.00 0.00 0.00 2.43
5062 15381 7.858498 TGAAACACCTAAATTAAACCCCAAAA 58.142 30.769 0.00 0.00 0.00 2.44
5063 15382 7.433537 TGAAACACCTAAATTAAACCCCAAA 57.566 32.000 0.00 0.00 0.00 3.28
5064 15383 7.619512 ATGAAACACCTAAATTAAACCCCAA 57.380 32.000 0.00 0.00 0.00 4.12
5065 15384 8.903059 ATATGAAACACCTAAATTAAACCCCA 57.097 30.769 0.00 0.00 0.00 4.96
5076 15395 9.899661 AGCTAACACAATATATGAAACACCTAA 57.100 29.630 0.00 0.00 0.00 2.69
5078 15397 9.547753 CTAGCTAACACAATATATGAAACACCT 57.452 33.333 0.00 0.00 0.00 4.00
5079 15398 8.283291 GCTAGCTAACACAATATATGAAACACC 58.717 37.037 7.70 0.00 0.00 4.16
5080 15399 9.046296 AGCTAGCTAACACAATATATGAAACAC 57.954 33.333 17.69 0.00 0.00 3.32
5099 15418 9.362151 ACACTTCTCTCTATTAATTAGCTAGCT 57.638 33.333 23.12 23.12 0.00 3.32
5100 15419 9.620660 GACACTTCTCTCTATTAATTAGCTAGC 57.379 37.037 6.62 6.62 0.00 3.42
5102 15421 9.869667 AGGACACTTCTCTCTATTAATTAGCTA 57.130 33.333 0.00 0.00 0.00 3.32
5103 15422 8.776061 AGGACACTTCTCTCTATTAATTAGCT 57.224 34.615 0.00 0.00 0.00 3.32
5104 15423 8.856103 AGAGGACACTTCTCTCTATTAATTAGC 58.144 37.037 0.00 0.00 36.99 3.09
5116 15435 4.953579 GGACATAAGAGAGGACACTTCTCT 59.046 45.833 7.43 7.43 43.56 3.10
5117 15436 4.201970 CGGACATAAGAGAGGACACTTCTC 60.202 50.000 0.00 0.00 0.00 2.87
5118 15437 3.697045 CGGACATAAGAGAGGACACTTCT 59.303 47.826 0.00 0.00 0.00 2.85
5119 15438 3.444388 ACGGACATAAGAGAGGACACTTC 59.556 47.826 0.00 0.00 0.00 3.01
5120 15439 3.193691 CACGGACATAAGAGAGGACACTT 59.806 47.826 0.00 0.00 0.00 3.16
5121 15440 2.755655 CACGGACATAAGAGAGGACACT 59.244 50.000 0.00 0.00 0.00 3.55
5122 15441 2.735762 GCACGGACATAAGAGAGGACAC 60.736 54.545 0.00 0.00 0.00 3.67
5123 15442 1.476891 GCACGGACATAAGAGAGGACA 59.523 52.381 0.00 0.00 0.00 4.02
5124 15443 1.751924 AGCACGGACATAAGAGAGGAC 59.248 52.381 0.00 0.00 0.00 3.85
5125 15444 2.145397 AGCACGGACATAAGAGAGGA 57.855 50.000 0.00 0.00 0.00 3.71
5126 15445 2.544685 CAAGCACGGACATAAGAGAGG 58.455 52.381 0.00 0.00 0.00 3.69
5127 15446 2.166459 TCCAAGCACGGACATAAGAGAG 59.834 50.000 0.00 0.00 0.00 3.20
5128 15447 2.176045 TCCAAGCACGGACATAAGAGA 58.824 47.619 0.00 0.00 0.00 3.10
5129 15448 2.672961 TCCAAGCACGGACATAAGAG 57.327 50.000 0.00 0.00 0.00 2.85
5138 15457 2.884087 ATAGCGTCGTCCAAGCACGG 62.884 60.000 0.00 0.00 40.35 4.94
5139 15458 0.248336 TATAGCGTCGTCCAAGCACG 60.248 55.000 0.00 0.00 41.36 5.34
5140 15459 2.135664 ATATAGCGTCGTCCAAGCAC 57.864 50.000 0.00 0.00 0.00 4.40
5141 15460 4.436451 CGTATATATAGCGTCGTCCAAGCA 60.436 45.833 0.00 0.00 0.00 3.91
5142 15461 4.027065 CGTATATATAGCGTCGTCCAAGC 58.973 47.826 0.00 0.00 0.00 4.01
5143 15462 5.020128 CACGTATATATAGCGTCGTCCAAG 58.980 45.833 13.77 3.04 36.67 3.61
5144 15463 4.452114 ACACGTATATATAGCGTCGTCCAA 59.548 41.667 13.77 0.00 36.67 3.53
5145 15464 3.996363 ACACGTATATATAGCGTCGTCCA 59.004 43.478 13.77 0.00 36.67 4.02
5146 15465 4.590400 ACACGTATATATAGCGTCGTCC 57.410 45.455 13.77 0.00 36.67 4.79
5148 15467 9.899226 TCTATATACACGTATATATAGCGTCGT 57.101 33.333 25.98 15.42 42.70 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.