Multiple sequence alignment - TraesCS1A01G089900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G089900 chr1A 100.000 7547 0 0 1 7547 79695663 79688117 0.000000e+00 13937.0
1 TraesCS1A01G089900 chr1A 98.697 614 7 1 6933 7545 79680325 79679712 0.000000e+00 1088.0
2 TraesCS1A01G089900 chr1A 96.183 131 5 0 3854 3984 79691682 79691552 1.650000e-51 215.0
3 TraesCS1A01G089900 chr1A 96.183 131 5 0 3982 4112 79691810 79691680 1.650000e-51 215.0
4 TraesCS1A01G089900 chr1A 90.370 135 13 0 1015 1149 79705099 79704965 2.160000e-40 178.0
5 TraesCS1A01G089900 chr1A 92.920 113 8 0 1261 1373 79704892 79704780 1.680000e-36 165.0
6 TraesCS1A01G089900 chr1A 95.745 94 4 0 6837 6930 313910458 313910365 1.310000e-32 152.0
7 TraesCS1A01G089900 chr1A 96.667 90 3 0 6841 6930 566481169 566481080 4.720000e-32 150.0
8 TraesCS1A01G089900 chr1A 73.121 439 88 24 3386 3811 79701684 79701263 6.150000e-26 130.0
9 TraesCS1A01G089900 chr1A 83.838 99 9 3 6221 6312 79689352 79689254 3.750000e-13 87.9
10 TraesCS1A01G089900 chr1A 83.838 99 9 3 6312 6410 79689443 79689352 3.750000e-13 87.9
11 TraesCS1A01G089900 chr1A 81.944 72 5 7 3881 3946 352871001 352871070 4.000000e-03 54.7
12 TraesCS1A01G089900 chr1D 94.392 2835 106 19 3982 6784 85189294 85186481 0.000000e+00 4305.0
13 TraesCS1A01G089900 chr1D 95.356 1744 55 11 2266 3984 85190888 85189146 0.000000e+00 2748.0
14 TraesCS1A01G089900 chr1D 93.730 1595 62 19 1 1588 85193184 85191621 0.000000e+00 2357.0
15 TraesCS1A01G089900 chr1D 89.319 646 39 7 1597 2226 85191516 85190885 0.000000e+00 784.0
16 TraesCS1A01G089900 chr1D 84.466 309 45 3 4828 5134 85197524 85197217 1.230000e-77 302.0
17 TraesCS1A01G089900 chr1D 80.886 361 37 23 1015 1373 85202274 85201944 9.720000e-64 255.0
18 TraesCS1A01G089900 chr1D 73.963 434 83 24 3386 3804 85199085 85198667 1.700000e-31 148.0
19 TraesCS1A01G089900 chr1D 88.889 99 5 3 6221 6313 85186953 85186855 4.780000e-22 117.0
20 TraesCS1A01G089900 chr1B 88.380 1704 99 43 571 2202 137638878 137637202 0.000000e+00 1958.0
21 TraesCS1A01G089900 chr1B 88.263 1670 100 42 5151 6784 137634158 137632549 0.000000e+00 1910.0
22 TraesCS1A01G089900 chr1B 93.346 1037 61 5 4120 5152 137635240 137634208 0.000000e+00 1526.0
23 TraesCS1A01G089900 chr1B 93.762 1010 52 8 2224 3229 137637138 137636136 0.000000e+00 1506.0
24 TraesCS1A01G089900 chr1B 96.926 618 15 4 6933 7547 198523549 198522933 0.000000e+00 1033.0
25 TraesCS1A01G089900 chr1B 91.501 553 38 6 3324 3873 137636132 137635586 0.000000e+00 752.0
26 TraesCS1A01G089900 chr1B 93.860 114 7 0 1260 1373 137652079 137651966 1.010000e-38 172.0
27 TraesCS1A01G089900 chr1B 89.630 135 14 0 1015 1149 137652289 137652155 1.010000e-38 172.0
28 TraesCS1A01G089900 chr1B 93.939 99 6 0 6832 6930 414091038 414090940 4.720000e-32 150.0
29 TraesCS1A01G089900 chr1B 94.681 94 5 0 6837 6930 171126578 171126671 6.100000e-31 147.0
30 TraesCS1A01G089900 chr1B 73.469 441 86 25 3386 3811 137648997 137648573 3.670000e-28 137.0
31 TraesCS1A01G089900 chr1B 98.148 54 1 0 502 555 137638917 137638864 2.240000e-15 95.3
32 TraesCS1A01G089900 chr1B 84.127 63 8 2 3881 3942 262066425 262066486 8.180000e-05 60.2
33 TraesCS1A01G089900 chr1B 84.127 63 8 2 4009 4070 262066425 262066486 8.180000e-05 60.2
34 TraesCS1A01G089900 chr6A 97.407 617 14 2 6933 7547 309731611 309730995 0.000000e+00 1050.0
35 TraesCS1A01G089900 chr2A 96.513 631 14 7 6922 7547 205789319 205789946 0.000000e+00 1037.0
36 TraesCS1A01G089900 chrUn 96.921 617 17 2 6933 7547 260238566 260237950 0.000000e+00 1033.0
37 TraesCS1A01G089900 chrUn 84.211 76 8 4 3867 3940 422881437 422881510 3.780000e-08 71.3
38 TraesCS1A01G089900 chrUn 84.211 76 8 4 3995 4068 422881437 422881510 3.780000e-08 71.3
39 TraesCS1A01G089900 chr6B 96.774 620 18 2 6929 7547 481304126 481304744 0.000000e+00 1033.0
40 TraesCS1A01G089900 chr6B 83.117 77 5 7 3998 4069 49622825 49622752 6.320000e-06 63.9
41 TraesCS1A01G089900 chr6B 83.117 77 5 7 3870 3941 49622825 49622752 6.320000e-06 63.9
42 TraesCS1A01G089900 chr5B 96.926 618 15 4 6933 7547 517007784 517007168 0.000000e+00 1033.0
43 TraesCS1A01G089900 chr5B 94.640 653 26 7 6899 7547 509354697 509354050 0.000000e+00 1003.0
44 TraesCS1A01G089900 chr5B 84.375 64 4 4 4007 4070 470206964 470207021 2.940000e-04 58.4
45 TraesCS1A01G089900 chr5B 94.595 37 0 2 4042 4078 704866483 704866517 1.000000e-03 56.5
46 TraesCS1A01G089900 chr5B 96.875 32 1 0 1010 1041 531330639 531330670 4.000000e-03 54.7
47 TraesCS1A01G089900 chr5A 96.921 617 17 2 6933 7547 136627272 136627888 0.000000e+00 1033.0
48 TraesCS1A01G089900 chr2D 96.703 91 3 0 6840 6930 445721249 445721339 1.310000e-32 152.0
49 TraesCS1A01G089900 chr2D 96.667 90 3 0 6841 6930 287095524 287095435 4.720000e-32 150.0
50 TraesCS1A01G089900 chr5D 94.792 96 5 0 6835 6930 380481930 380481835 4.720000e-32 150.0
51 TraesCS1A01G089900 chr3D 95.652 92 4 0 6839 6930 595025139 595025048 1.700000e-31 148.0
52 TraesCS1A01G089900 chr7D 94.681 94 5 0 6837 6930 228511629 228511536 6.100000e-31 147.0
53 TraesCS1A01G089900 chr7D 85.507 69 3 6 4006 4070 22585918 22585983 1.760000e-06 65.8
54 TraesCS1A01G089900 chr7D 84.058 69 4 6 3878 3942 22585918 22585983 8.180000e-05 60.2
55 TraesCS1A01G089900 chr2B 78.440 218 33 11 1343 1556 548504350 548504557 6.150000e-26 130.0
56 TraesCS1A01G089900 chr6D 88.889 54 4 2 4041 4094 351107273 351107222 1.760000e-06 65.8
57 TraesCS1A01G089900 chr4B 83.824 68 5 5 4009 4073 109408598 109408534 8.180000e-05 60.2
58 TraesCS1A01G089900 chr4B 83.824 68 5 5 3881 3945 109408598 109408534 8.180000e-05 60.2
59 TraesCS1A01G089900 chr4D 81.013 79 10 5 3869 3946 486185912 486185986 2.940000e-04 58.4
60 TraesCS1A01G089900 chr4D 81.013 79 10 5 3997 4074 486185912 486185986 2.940000e-04 58.4
61 TraesCS1A01G089900 chr4A 83.333 66 5 6 4042 4104 610498626 610498564 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G089900 chr1A 79688117 79695663 7546 True 13937.000000 13937 100.000000 1 7547 1 chr1A.!!$R2 7546
1 TraesCS1A01G089900 chr1A 79679712 79680325 613 True 1088.000000 1088 98.697000 6933 7545 1 chr1A.!!$R1 612
2 TraesCS1A01G089900 chr1D 85186481 85193184 6703 True 2062.200000 4305 92.337200 1 6784 5 chr1D.!!$R1 6783
3 TraesCS1A01G089900 chr1D 85197217 85202274 5057 True 235.000000 302 79.771667 1015 5134 3 chr1D.!!$R2 4119
4 TraesCS1A01G089900 chr1B 137632549 137638917 6368 True 1291.216667 1958 92.233333 502 6784 6 chr1B.!!$R3 6282
5 TraesCS1A01G089900 chr1B 198522933 198523549 616 True 1033.000000 1033 96.926000 6933 7547 1 chr1B.!!$R1 614
6 TraesCS1A01G089900 chr6A 309730995 309731611 616 True 1050.000000 1050 97.407000 6933 7547 1 chr6A.!!$R1 614
7 TraesCS1A01G089900 chr2A 205789319 205789946 627 False 1037.000000 1037 96.513000 6922 7547 1 chr2A.!!$F1 625
8 TraesCS1A01G089900 chrUn 260237950 260238566 616 True 1033.000000 1033 96.921000 6933 7547 1 chrUn.!!$R1 614
9 TraesCS1A01G089900 chr6B 481304126 481304744 618 False 1033.000000 1033 96.774000 6929 7547 1 chr6B.!!$F1 618
10 TraesCS1A01G089900 chr5B 517007168 517007784 616 True 1033.000000 1033 96.926000 6933 7547 1 chr5B.!!$R2 614
11 TraesCS1A01G089900 chr5B 509354050 509354697 647 True 1003.000000 1003 94.640000 6899 7547 1 chr5B.!!$R1 648
12 TraesCS1A01G089900 chr5A 136627272 136627888 616 False 1033.000000 1033 96.921000 6933 7547 1 chr5A.!!$F1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
681 691 0.383124 GTTCAACTCAACGCAGTCGC 60.383 55.000 0.0 0.0 45.00 5.19 F
1568 2272 0.192566 TTGAGGTGTAGTGGGAGGGT 59.807 55.000 0.0 0.0 0.00 4.34 F
2288 3858 1.131303 ATGTGACGGGACAAAGGGGA 61.131 55.000 0.0 0.0 0.00 4.81 F
3893 5506 1.027357 GCGTAGTATTCCCTCCGTCA 58.973 55.000 0.0 0.0 0.00 4.35 F
4071 5972 0.337082 TTGGGACGGAGGGAGTATCA 59.663 55.000 0.0 0.0 36.25 2.15 F
4072 5973 0.561184 TGGGACGGAGGGAGTATCAT 59.439 55.000 0.0 0.0 36.25 2.45 F
4073 5974 1.062428 TGGGACGGAGGGAGTATCATT 60.062 52.381 0.0 0.0 36.25 2.57 F
4074 5975 1.619332 GGGACGGAGGGAGTATCATTC 59.381 57.143 0.0 0.0 36.25 2.67 F
6083 8110 1.001068 CAAATCCATTGGCACAGCACA 59.999 47.619 0.0 0.0 42.39 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2275 3845 0.252197 CCTAGTTCCCCTTTGTCCCG 59.748 60.000 0.00 0.0 0.00 5.14 R
2814 4418 3.260884 TCGATCTGTTTAAGGAAGGTGCT 59.739 43.478 0.00 0.0 0.00 4.40 R
4052 5953 0.337082 TGATACTCCCTCCGTCCCAA 59.663 55.000 0.00 0.0 0.00 4.12 R
5459 7467 3.924144 TGCCAAAACAATAAGCATGTCC 58.076 40.909 0.00 0.0 0.00 4.02 R
6068 8095 1.007038 GTGTGTGCTGTGCCAATGG 60.007 57.895 0.00 0.0 0.00 3.16 R
6077 8104 8.641155 CAAAAATGATAATGTTAGTGTGTGCTG 58.359 33.333 0.00 0.0 0.00 4.41 R
6083 8110 8.977505 GTGCAACAAAAATGATAATGTTAGTGT 58.022 29.630 0.00 0.0 34.45 3.55 R
6254 8297 7.015682 ACCAACCCATGTGTCAAAACAAATATA 59.984 33.333 0.00 0.0 37.08 0.86 R
7052 9097 2.301870 CGAGGCCCTGGCTTGTATTATA 59.698 50.000 8.29 0.0 38.98 0.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 8.470657 AGACTATAAGCATATGACTGACAAGA 57.529 34.615 6.97 0.00 0.00 3.02
60 61 8.824159 AGCATATGACTGACAAGATTACATAC 57.176 34.615 6.97 0.00 0.00 2.39
98 99 3.450904 TCACTAGGATTGCCCTAAGTGT 58.549 45.455 14.39 0.71 46.43 3.55
106 107 1.004918 GCCCTAAGTGTGACACGCT 60.005 57.895 15.92 15.92 41.35 5.07
134 135 6.158598 ACAATGCAATAATGTGAAGACCAAC 58.841 36.000 0.00 0.00 0.00 3.77
149 150 1.228124 CAACGGGGGCAAAGTCTCA 60.228 57.895 0.00 0.00 0.00 3.27
157 158 1.815003 GGGCAAAGTCTCAACCATCAG 59.185 52.381 0.00 0.00 0.00 2.90
176 177 6.427242 CCATCAGTTCTCATTCTCACATATGG 59.573 42.308 7.80 0.00 0.00 2.74
200 201 8.998377 TGGTACAATAACATGATCCAATATTCG 58.002 33.333 0.00 0.00 31.92 3.34
204 205 7.391554 ACAATAACATGATCCAATATTCGGGAG 59.608 37.037 0.00 0.00 36.45 4.30
250 252 9.269453 CATAATTGCTTATTCACTCATGAGAGA 57.731 33.333 29.27 23.23 44.98 3.10
318 321 5.637810 ACGTGTATTTGGATTACACAGACTG 59.362 40.000 12.78 0.00 42.90 3.51
333 336 5.978919 ACACAGACTGCAAAACACAAATATG 59.021 36.000 1.25 0.00 0.00 1.78
336 339 4.832266 AGACTGCAAAACACAAATATGGGA 59.168 37.500 0.00 0.00 32.82 4.37
340 343 7.322664 ACTGCAAAACACAAATATGGGAATAG 58.677 34.615 0.00 0.00 32.82 1.73
357 360 5.944599 GGGAATAGCACATGATGATTGAGAT 59.055 40.000 0.00 0.00 0.00 2.75
364 367 1.302366 TGATGATTGAGATGCCACGC 58.698 50.000 0.00 0.00 0.00 5.34
370 373 2.743538 GAGATGCCACGCACTGCA 60.744 61.111 1.11 0.00 43.04 4.41
411 416 6.374417 AGATATAGTTGTTTGGTGGTGTCT 57.626 37.500 0.00 0.00 0.00 3.41
420 425 4.709397 TGTTTGGTGGTGTCTCTTTTGAAT 59.291 37.500 0.00 0.00 0.00 2.57
422 427 3.221771 TGGTGGTGTCTCTTTTGAATGG 58.778 45.455 0.00 0.00 0.00 3.16
464 469 7.609532 ACAACAATTTTTGGGATAGAGAGAGAG 59.390 37.037 9.06 0.00 34.12 3.20
466 471 8.100135 ACAATTTTTGGGATAGAGAGAGAGAT 57.900 34.615 0.00 0.00 34.12 2.75
467 472 7.992033 ACAATTTTTGGGATAGAGAGAGAGATG 59.008 37.037 0.00 0.00 34.12 2.90
546 552 7.440523 AAGATTCACATCCGCTAATATTTCC 57.559 36.000 0.00 0.00 0.00 3.13
547 553 6.533730 AGATTCACATCCGCTAATATTTCCA 58.466 36.000 0.00 0.00 0.00 3.53
548 554 7.170965 AGATTCACATCCGCTAATATTTCCAT 58.829 34.615 0.00 0.00 0.00 3.41
549 555 8.321353 AGATTCACATCCGCTAATATTTCCATA 58.679 33.333 0.00 0.00 0.00 2.74
557 563 8.570068 TCCGCTAATATTTCCATAATAAACCC 57.430 34.615 0.00 0.00 0.00 4.11
558 564 8.387813 TCCGCTAATATTTCCATAATAAACCCT 58.612 33.333 0.00 0.00 0.00 4.34
559 565 8.674607 CCGCTAATATTTCCATAATAAACCCTC 58.325 37.037 0.00 0.00 0.00 4.30
560 566 9.226606 CGCTAATATTTCCATAATAAACCCTCA 57.773 33.333 0.00 0.00 0.00 3.86
566 572 8.893563 ATTTCCATAATAAACCCTCAGAAACA 57.106 30.769 0.00 0.00 0.00 2.83
567 573 8.713708 TTTCCATAATAAACCCTCAGAAACAA 57.286 30.769 0.00 0.00 0.00 2.83
568 574 7.938140 TCCATAATAAACCCTCAGAAACAAG 57.062 36.000 0.00 0.00 0.00 3.16
569 575 6.889722 TCCATAATAAACCCTCAGAAACAAGG 59.110 38.462 0.00 0.00 0.00 3.61
570 576 6.663523 CCATAATAAACCCTCAGAAACAAGGT 59.336 38.462 0.00 0.00 0.00 3.50
639 647 4.742201 CCACCGGCCAGTCAGACG 62.742 72.222 0.00 0.00 0.00 4.18
651 659 3.433709 CAGTCAGACGTGAGCTAATCTG 58.566 50.000 0.00 8.87 39.99 2.90
652 660 3.127721 CAGTCAGACGTGAGCTAATCTGA 59.872 47.826 12.35 12.35 44.05 3.27
653 661 3.376859 AGTCAGACGTGAGCTAATCTGAG 59.623 47.826 15.36 0.00 46.18 3.35
681 691 0.383124 GTTCAACTCAACGCAGTCGC 60.383 55.000 0.00 0.00 45.00 5.19
825 835 1.065854 AGCGAACCTTCCTCCAATCAG 60.066 52.381 0.00 0.00 0.00 2.90
832 842 2.234908 CCTTCCTCCAATCAGAACGTCT 59.765 50.000 0.00 0.00 0.00 4.18
883 916 4.131088 GTCCGCCCCGTCTCTCAC 62.131 72.222 0.00 0.00 0.00 3.51
1163 1204 3.459063 GTAAGTCGCCTCCGCCCT 61.459 66.667 0.00 0.00 0.00 5.19
1250 1293 2.759795 GGCCCCTTGCTTGTCTCT 59.240 61.111 0.00 0.00 40.92 3.10
1251 1294 1.676967 GGCCCCTTGCTTGTCTCTG 60.677 63.158 0.00 0.00 40.92 3.35
1568 2272 0.192566 TTGAGGTGTAGTGGGAGGGT 59.807 55.000 0.00 0.00 0.00 4.34
1582 2287 1.610886 GGAGGGTGTTGTCTTACTGGC 60.611 57.143 0.00 0.00 0.00 4.85
1590 2295 4.215399 GTGTTGTCTTACTGGCTGCAAATA 59.785 41.667 0.50 0.00 0.00 1.40
1591 2296 4.215399 TGTTGTCTTACTGGCTGCAAATAC 59.785 41.667 0.50 0.00 0.00 1.89
1594 2299 5.419542 TGTCTTACTGGCTGCAAATACTAG 58.580 41.667 0.50 0.00 0.00 2.57
1680 2490 8.575736 TTCCTATTAGAATTCCAGTATCCCAA 57.424 34.615 0.65 0.00 0.00 4.12
1805 3312 7.627088 GCTGCTATACAAACAAATGTCATCACT 60.627 37.037 0.00 0.00 34.75 3.41
1982 3509 8.122472 TGTCTATCACTAAGATTGTCTTGTCA 57.878 34.615 2.60 0.00 37.29 3.58
2053 3580 9.715121 AACGTTGAGTCCATTTATTTCTAGTAA 57.285 29.630 0.00 0.00 0.00 2.24
2210 3764 8.921205 TCTCCACCATAGTCTAGTTATTTAACC 58.079 37.037 0.00 0.00 36.88 2.85
2212 3766 9.275572 TCCACCATAGTCTAGTTATTTAACCTT 57.724 33.333 0.00 0.00 36.88 3.50
2251 3821 9.495382 GTCTAATTGGATATCCCTCCTAGTAAT 57.505 37.037 19.34 6.58 36.20 1.89
2264 3834 8.075621 TCCCTCCTAGTAATCCCTTTTGTAATA 58.924 37.037 0.00 0.00 0.00 0.98
2275 3845 7.624360 TCCCTTTTGTAATATGTGATGTGAC 57.376 36.000 0.00 0.00 0.00 3.67
2280 3850 4.689071 TGTAATATGTGATGTGACGGGAC 58.311 43.478 0.00 0.00 0.00 4.46
2281 3851 3.904800 AATATGTGATGTGACGGGACA 57.095 42.857 0.00 0.00 0.00 4.02
2288 3858 1.131303 ATGTGACGGGACAAAGGGGA 61.131 55.000 0.00 0.00 0.00 4.81
2328 3900 8.655970 TGATAGTTATGTTCTGAATTTGTGACG 58.344 33.333 0.00 0.00 0.00 4.35
2329 3901 6.861065 AGTTATGTTCTGAATTTGTGACGT 57.139 33.333 0.00 0.00 0.00 4.34
2363 3936 6.363577 ACACACATCTTACAGTTTGTTCTG 57.636 37.500 0.00 0.00 40.80 3.02
2616 4217 3.868754 GCTTCCGAGACCTGGTAAATTGT 60.869 47.826 0.00 0.00 0.00 2.71
2680 4283 8.519799 AGTGTTTCCTTTTTCTGTTCTAATCA 57.480 30.769 0.00 0.00 0.00 2.57
2814 4418 7.147811 TGTGTACATATATAACTGAGTGTGGCA 60.148 37.037 0.00 0.00 0.00 4.92
2822 4426 1.227943 TGAGTGTGGCAGCACCTTC 60.228 57.895 13.96 8.64 40.04 3.46
2894 4498 4.832248 TGCTGAAGAACGTCTTGGATATT 58.168 39.130 5.20 0.00 36.73 1.28
3079 4683 5.685520 TGTGACTGCCTACATATTTACCA 57.314 39.130 0.00 0.00 0.00 3.25
3080 4684 6.247229 TGTGACTGCCTACATATTTACCAT 57.753 37.500 0.00 0.00 0.00 3.55
3238 4844 5.713792 TGAAAGTTTGTGAACCTGTTTGA 57.286 34.783 0.00 0.00 36.39 2.69
3491 5102 3.433306 TCGGGATGACAAGGTTTGATT 57.567 42.857 0.00 0.00 0.00 2.57
3522 5133 5.095490 GGCACATTTCTTAACAGTGTATGC 58.905 41.667 0.00 0.00 32.99 3.14
3559 5170 2.083774 TGGCCACTCATTCATCGTTTC 58.916 47.619 0.00 0.00 0.00 2.78
3589 5201 6.159398 AGGTTGAGGATCTTTCAAGGATGTAT 59.841 38.462 11.72 0.00 35.39 2.29
3601 5213 6.869315 TCAAGGATGTATAGACTCTTCTCG 57.131 41.667 0.00 0.00 32.75 4.04
3805 5418 3.440173 TGCTAATAACAAGAAGGTGCAGC 59.560 43.478 8.11 8.11 0.00 5.25
3882 5495 9.680315 GATTAGACAGTTGAATTAGCGTAGTAT 57.320 33.333 0.00 0.00 0.00 2.12
3893 5506 1.027357 GCGTAGTATTCCCTCCGTCA 58.973 55.000 0.00 0.00 0.00 4.35
3982 5883 7.068103 TGACGCCATTCCACATTAATATTCTTT 59.932 33.333 0.00 0.00 0.00 2.52
3983 5884 7.781056 ACGCCATTCCACATTAATATTCTTTT 58.219 30.769 0.00 0.00 0.00 2.27
3984 5885 7.706179 ACGCCATTCCACATTAATATTCTTTTG 59.294 33.333 0.00 0.00 0.00 2.44
3985 5886 7.920151 CGCCATTCCACATTAATATTCTTTTGA 59.080 33.333 0.00 0.00 0.00 2.69
3986 5887 9.768662 GCCATTCCACATTAATATTCTTTTGAT 57.231 29.630 0.00 0.00 0.00 2.57
4004 5905 8.730680 TCTTTTGATTAGACAGTTGAATTAGCC 58.269 33.333 0.00 0.00 0.00 3.93
4005 5906 8.635765 TTTTGATTAGACAGTTGAATTAGCCT 57.364 30.769 0.00 0.00 0.00 4.58
4006 5907 9.733556 TTTTGATTAGACAGTTGAATTAGCCTA 57.266 29.630 0.00 0.00 0.00 3.93
4007 5908 8.948631 TTGATTAGACAGTTGAATTAGCCTAG 57.051 34.615 0.00 0.00 0.00 3.02
4008 5909 8.079211 TGATTAGACAGTTGAATTAGCCTAGT 57.921 34.615 0.00 0.00 0.00 2.57
4009 5910 9.197306 TGATTAGACAGTTGAATTAGCCTAGTA 57.803 33.333 0.00 0.00 0.00 1.82
4013 5914 7.501844 AGACAGTTGAATTAGCCTAGTATTCC 58.498 38.462 0.00 0.00 0.00 3.01
4014 5915 6.592870 ACAGTTGAATTAGCCTAGTATTCCC 58.407 40.000 0.00 0.00 0.00 3.97
4015 5916 6.387220 ACAGTTGAATTAGCCTAGTATTCCCT 59.613 38.462 0.00 0.00 0.00 4.20
4016 5917 6.931840 CAGTTGAATTAGCCTAGTATTCCCTC 59.068 42.308 0.00 0.00 0.00 4.30
4017 5918 6.043358 AGTTGAATTAGCCTAGTATTCCCTCC 59.957 42.308 0.00 0.00 0.00 4.30
4018 5919 4.527038 TGAATTAGCCTAGTATTCCCTCCG 59.473 45.833 0.00 0.00 0.00 4.63
4019 5920 3.607490 TTAGCCTAGTATTCCCTCCGT 57.393 47.619 0.00 0.00 0.00 4.69
4020 5921 1.998222 AGCCTAGTATTCCCTCCGTC 58.002 55.000 0.00 0.00 0.00 4.79
4021 5922 1.499870 AGCCTAGTATTCCCTCCGTCT 59.500 52.381 0.00 0.00 0.00 4.18
4022 5923 1.887854 GCCTAGTATTCCCTCCGTCTC 59.112 57.143 0.00 0.00 0.00 3.36
4023 5924 2.752154 GCCTAGTATTCCCTCCGTCTCA 60.752 54.545 0.00 0.00 0.00 3.27
4024 5925 3.768878 CCTAGTATTCCCTCCGTCTCAT 58.231 50.000 0.00 0.00 0.00 2.90
4025 5926 4.810033 GCCTAGTATTCCCTCCGTCTCATA 60.810 50.000 0.00 0.00 0.00 2.15
4026 5927 5.511363 CCTAGTATTCCCTCCGTCTCATAT 58.489 45.833 0.00 0.00 0.00 1.78
4027 5928 5.591067 CCTAGTATTCCCTCCGTCTCATATC 59.409 48.000 0.00 0.00 0.00 1.63
4028 5929 4.999310 AGTATTCCCTCCGTCTCATATCA 58.001 43.478 0.00 0.00 0.00 2.15
4029 5930 5.584913 AGTATTCCCTCCGTCTCATATCAT 58.415 41.667 0.00 0.00 0.00 2.45
4030 5931 6.732487 AGTATTCCCTCCGTCTCATATCATA 58.268 40.000 0.00 0.00 0.00 2.15
4031 5932 7.358263 AGTATTCCCTCCGTCTCATATCATAT 58.642 38.462 0.00 0.00 0.00 1.78
4032 5933 5.921962 TTCCCTCCGTCTCATATCATATG 57.078 43.478 0.00 0.00 0.00 1.78
4033 5934 4.281657 TCCCTCCGTCTCATATCATATGG 58.718 47.826 4.76 0.00 0.00 2.74
4034 5935 4.026744 CCCTCCGTCTCATATCATATGGT 58.973 47.826 4.76 0.00 0.00 3.55
4035 5936 4.467795 CCCTCCGTCTCATATCATATGGTT 59.532 45.833 4.76 0.00 0.00 3.67
4036 5937 5.394663 CCCTCCGTCTCATATCATATGGTTC 60.395 48.000 4.76 0.00 0.00 3.62
4037 5938 5.185828 CCTCCGTCTCATATCATATGGTTCA 59.814 44.000 4.76 0.00 0.00 3.18
4038 5939 6.295292 CCTCCGTCTCATATCATATGGTTCAA 60.295 42.308 4.76 0.00 0.00 2.69
4039 5940 6.691508 TCCGTCTCATATCATATGGTTCAAG 58.308 40.000 4.76 0.00 0.00 3.02
4040 5941 6.493458 TCCGTCTCATATCATATGGTTCAAGA 59.507 38.462 4.76 0.00 0.00 3.02
4041 5942 7.015195 TCCGTCTCATATCATATGGTTCAAGAA 59.985 37.037 4.76 0.00 0.00 2.52
4042 5943 7.330454 CCGTCTCATATCATATGGTTCAAGAAG 59.670 40.741 4.76 2.82 0.00 2.85
4043 5944 8.084684 CGTCTCATATCATATGGTTCAAGAAGA 58.915 37.037 4.76 0.00 0.00 2.87
4044 5945 9.202273 GTCTCATATCATATGGTTCAAGAAGAC 57.798 37.037 4.76 4.38 0.00 3.01
4045 5946 8.927411 TCTCATATCATATGGTTCAAGAAGACA 58.073 33.333 4.76 0.00 0.00 3.41
4046 5947 8.893219 TCATATCATATGGTTCAAGAAGACAC 57.107 34.615 4.76 0.00 0.00 3.67
4047 5948 8.708378 TCATATCATATGGTTCAAGAAGACACT 58.292 33.333 4.76 0.00 0.00 3.55
4048 5949 9.334947 CATATCATATGGTTCAAGAAGACACTT 57.665 33.333 2.13 0.00 0.00 3.16
4051 5952 9.911788 ATCATATGGTTCAAGAAGACACTTATT 57.088 29.630 2.13 0.00 0.00 1.40
4052 5953 9.739276 TCATATGGTTCAAGAAGACACTTATTT 57.261 29.630 2.13 0.00 0.00 1.40
4055 5956 7.038154 TGGTTCAAGAAGACACTTATTTTGG 57.962 36.000 0.00 0.00 0.00 3.28
4056 5957 6.040391 TGGTTCAAGAAGACACTTATTTTGGG 59.960 38.462 0.00 0.00 0.00 4.12
4057 5958 6.264518 GGTTCAAGAAGACACTTATTTTGGGA 59.735 38.462 0.00 0.00 0.00 4.37
4058 5959 6.877611 TCAAGAAGACACTTATTTTGGGAC 57.122 37.500 0.00 0.00 0.00 4.46
4059 5960 5.468746 TCAAGAAGACACTTATTTTGGGACG 59.531 40.000 0.00 0.00 0.00 4.79
4060 5961 4.324267 AGAAGACACTTATTTTGGGACGG 58.676 43.478 0.00 0.00 0.00 4.79
4061 5962 4.041198 AGAAGACACTTATTTTGGGACGGA 59.959 41.667 0.00 0.00 0.00 4.69
4062 5963 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
4063 5964 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4064 5965 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
4065 5966 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
4066 5967 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
4067 5968 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
4068 5969 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4069 5970 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
4070 5971 1.492764 TTTGGGACGGAGGGAGTATC 58.507 55.000 0.00 0.00 0.00 2.24
4071 5972 0.337082 TTGGGACGGAGGGAGTATCA 59.663 55.000 0.00 0.00 36.25 2.15
4072 5973 0.561184 TGGGACGGAGGGAGTATCAT 59.439 55.000 0.00 0.00 36.25 2.45
4073 5974 1.062428 TGGGACGGAGGGAGTATCATT 60.062 52.381 0.00 0.00 36.25 2.57
4074 5975 1.619332 GGGACGGAGGGAGTATCATTC 59.381 57.143 0.00 0.00 36.25 2.67
4075 5976 2.317040 GGACGGAGGGAGTATCATTCA 58.683 52.381 0.00 0.00 36.25 2.57
4076 5977 2.698797 GGACGGAGGGAGTATCATTCAA 59.301 50.000 0.00 0.00 36.25 2.69
4077 5978 3.325135 GGACGGAGGGAGTATCATTCAAT 59.675 47.826 0.00 0.00 36.25 2.57
4078 5979 4.561105 GACGGAGGGAGTATCATTCAATC 58.439 47.826 0.00 0.00 36.25 2.67
4079 5980 3.005897 ACGGAGGGAGTATCATTCAATCG 59.994 47.826 0.00 0.00 36.25 3.34
4080 5981 3.005897 CGGAGGGAGTATCATTCAATCGT 59.994 47.826 0.00 0.00 36.25 3.73
4081 5982 4.561105 GGAGGGAGTATCATTCAATCGTC 58.439 47.826 0.00 0.00 36.25 4.20
4082 5983 4.039245 GGAGGGAGTATCATTCAATCGTCA 59.961 45.833 0.00 0.00 36.25 4.35
4083 5984 5.453339 GGAGGGAGTATCATTCAATCGTCAA 60.453 44.000 0.00 0.00 36.25 3.18
4084 5985 6.179906 AGGGAGTATCATTCAATCGTCAAT 57.820 37.500 0.00 0.00 36.25 2.57
4085 5986 5.994054 AGGGAGTATCATTCAATCGTCAATG 59.006 40.000 0.00 0.00 36.25 2.82
4086 5987 5.991606 GGGAGTATCATTCAATCGTCAATGA 59.008 40.000 0.00 0.00 41.97 2.57
4087 5988 6.073548 GGGAGTATCATTCAATCGTCAATGAC 60.074 42.308 2.75 2.75 40.87 3.06
4088 5989 6.576021 GAGTATCATTCAATCGTCAATGACG 58.424 40.000 27.73 27.73 46.05 4.35
4089 5990 6.829667 GAGTATCATTCAATCGTCAATGACGC 60.830 42.308 28.63 11.47 45.06 5.19
4090 5991 9.090052 GAGTATCATTCAATCGTCAATGACGCA 62.090 40.741 28.63 18.30 45.06 5.24
4098 5999 2.987413 GTCAATGACGCAATTCCACA 57.013 45.000 0.00 0.00 0.00 4.17
4099 6000 3.492421 GTCAATGACGCAATTCCACAT 57.508 42.857 0.00 0.00 0.00 3.21
4100 6001 3.836949 GTCAATGACGCAATTCCACATT 58.163 40.909 0.00 0.00 0.00 2.71
4101 6002 4.980590 GTCAATGACGCAATTCCACATTA 58.019 39.130 0.00 0.00 31.40 1.90
4102 6003 5.398169 GTCAATGACGCAATTCCACATTAA 58.602 37.500 0.00 0.00 31.40 1.40
4103 6004 6.035843 GTCAATGACGCAATTCCACATTAAT 58.964 36.000 0.00 0.00 31.40 1.40
4104 6005 7.192913 GTCAATGACGCAATTCCACATTAATA 58.807 34.615 0.00 0.00 31.40 0.98
4105 6006 7.862372 GTCAATGACGCAATTCCACATTAATAT 59.138 33.333 0.00 0.00 31.40 1.28
4106 6007 8.412456 TCAATGACGCAATTCCACATTAATATT 58.588 29.630 0.00 0.00 31.40 1.28
4107 6008 8.693504 CAATGACGCAATTCCACATTAATATTC 58.306 33.333 0.00 0.00 31.40 1.75
4355 6275 2.703536 TCTTTCACAAGGTCTGCTGGTA 59.296 45.455 0.00 0.00 0.00 3.25
4373 6293 7.517320 TGCTGGTAGATACATTTGTATTCCAT 58.483 34.615 16.13 4.86 40.99 3.41
4406 6326 5.680594 TCATAAATTGAAATGGCTGCCTT 57.319 34.783 21.03 11.16 0.00 4.35
4416 6336 5.422970 TGAAATGGCTGCCTTATTCTCAAAT 59.577 36.000 21.03 0.00 0.00 2.32
4421 6341 6.186957 TGGCTGCCTTATTCTCAAATTTCTA 58.813 36.000 21.03 0.00 0.00 2.10
4422 6342 6.095440 TGGCTGCCTTATTCTCAAATTTCTAC 59.905 38.462 21.03 0.00 0.00 2.59
4474 6407 2.749621 GGTCTTCTGCAATAAGGGTGTG 59.250 50.000 8.24 0.00 0.00 3.82
4766 6722 6.926630 TTTTTGCCTATTTAACCTCCACAT 57.073 33.333 0.00 0.00 0.00 3.21
4816 6772 8.306038 AGCTTTGTATTTATGTTGAAATGCTCA 58.694 29.630 0.00 0.00 33.87 4.26
5097 7053 9.541143 CCAACCTACAAAACTTTTGACATAAAT 57.459 29.630 19.07 0.00 0.00 1.40
5123 7079 6.248569 TCCCTCTGAGATGGTAAAATAACC 57.751 41.667 6.17 0.00 40.19 2.85
5223 7231 8.770438 ATCTACACTTCTCAATTTCACTTCTC 57.230 34.615 0.00 0.00 0.00 2.87
5224 7232 7.726216 TCTACACTTCTCAATTTCACTTCTCA 58.274 34.615 0.00 0.00 0.00 3.27
5550 7558 5.798132 TCTGAGATTGTAACACAGCTGAAT 58.202 37.500 23.35 8.35 0.00 2.57
5646 7654 2.766828 AGCTGGTAGAACTATTTCGCCT 59.233 45.455 9.55 0.00 36.78 5.52
5728 7736 6.850752 TTTCTGGTTTTCTCTTCTTTGGTT 57.149 33.333 0.00 0.00 0.00 3.67
5730 7738 6.207691 TCTGGTTTTCTCTTCTTTGGTTTG 57.792 37.500 0.00 0.00 0.00 2.93
5964 7989 4.377431 GCATGTTCAAGGTACTGTTCTTCG 60.377 45.833 0.00 0.00 40.86 3.79
5972 7997 6.096423 TCAAGGTACTGTTCTTCGCTACATAT 59.904 38.462 0.00 0.00 40.86 1.78
5977 8002 4.332819 ACTGTTCTTCGCTACATATTTGGC 59.667 41.667 0.00 0.00 0.00 4.52
6024 8050 6.017192 TGCTACTATGCGCATTTAACATCATT 60.017 34.615 30.42 4.36 35.36 2.57
6031 8057 8.645730 ATGCGCATTTAACATCATTGATTTTA 57.354 26.923 19.28 0.00 0.00 1.52
6032 8058 8.471361 TGCGCATTTAACATCATTGATTTTAA 57.529 26.923 5.66 11.99 0.00 1.52
6068 8095 9.722056 CTTGCTACTATCAAACATTACCAAATC 57.278 33.333 0.00 0.00 0.00 2.17
6083 8110 1.001068 CAAATCCATTGGCACAGCACA 59.999 47.619 0.00 0.00 42.39 4.57
6126 8153 1.856802 CACTTGCCTTTTGTTCTGGC 58.143 50.000 0.00 0.00 46.26 4.85
6127 8154 1.410153 CACTTGCCTTTTGTTCTGGCT 59.590 47.619 0.00 0.00 46.23 4.75
6129 8156 3.068024 CACTTGCCTTTTGTTCTGGCTTA 59.932 43.478 0.00 0.00 46.23 3.09
6132 8159 5.538433 ACTTGCCTTTTGTTCTGGCTTAATA 59.462 36.000 0.00 0.00 46.23 0.98
6197 8224 2.995466 TGCACTGAAGTTGCTAATGC 57.005 45.000 0.00 0.00 40.20 3.56
6254 8297 5.010012 AGCTAGCTGTTTATGCTTTGTGTTT 59.990 36.000 18.57 0.00 41.46 2.83
6285 8328 3.586470 TGACACATGGGTTGGTTTAGT 57.414 42.857 0.00 0.00 0.00 2.24
6290 8333 6.183361 TGACACATGGGTTGGTTTAGTAACTA 60.183 38.462 0.00 0.00 34.59 2.24
6319 8362 8.632679 AGATGTTTAGCTTGAATTCAAAAGACA 58.367 29.630 20.82 18.31 35.15 3.41
6344 8387 5.112686 AGCTAGCTGTTTATGCTTGTCTAC 58.887 41.667 18.57 0.00 41.46 2.59
6391 8434 2.034179 GGGTTGGTTTAGCAACTGACAC 59.966 50.000 20.24 6.99 32.90 3.67
6630 8673 1.956170 CTCCAACGACTTGCTGCGT 60.956 57.895 0.00 0.00 43.39 5.24
6681 8724 0.559205 TATCTTCCCGGGCTGGTCTA 59.441 55.000 18.49 0.00 35.15 2.59
6747 8791 3.834799 GGAGGCACCTCGGTACCG 61.835 72.222 28.66 28.66 43.59 4.02
6780 8824 5.359576 TCCTTCTCTTGCAGTGCTTTTTAAA 59.640 36.000 17.60 0.00 0.00 1.52
6784 8828 9.415544 CTTCTCTTGCAGTGCTTTTTAAATATT 57.584 29.630 17.60 0.00 0.00 1.28
6785 8829 9.762933 TTCTCTTGCAGTGCTTTTTAAATATTT 57.237 25.926 17.60 5.89 0.00 1.40
6808 8852 5.551760 ATTTCTGCCAACTTATCTGTTCG 57.448 39.130 0.00 0.00 0.00 3.95
6809 8853 3.953712 TCTGCCAACTTATCTGTTCGA 57.046 42.857 0.00 0.00 0.00 3.71
6810 8854 4.265904 TCTGCCAACTTATCTGTTCGAA 57.734 40.909 0.00 0.00 0.00 3.71
6811 8855 4.637276 TCTGCCAACTTATCTGTTCGAAA 58.363 39.130 0.00 0.00 0.00 3.46
6812 8856 4.690748 TCTGCCAACTTATCTGTTCGAAAG 59.309 41.667 0.00 0.00 0.00 2.62
6813 8857 4.385825 TGCCAACTTATCTGTTCGAAAGT 58.614 39.130 0.00 0.00 33.72 2.66
6814 8858 4.213270 TGCCAACTTATCTGTTCGAAAGTG 59.787 41.667 0.00 0.00 32.69 3.16
6815 8859 4.378459 GCCAACTTATCTGTTCGAAAGTGG 60.378 45.833 0.00 4.76 32.69 4.00
6816 8860 4.154195 CCAACTTATCTGTTCGAAAGTGGG 59.846 45.833 0.00 1.54 36.85 4.61
6817 8861 4.884668 ACTTATCTGTTCGAAAGTGGGA 57.115 40.909 0.00 0.00 31.20 4.37
6818 8862 4.822026 ACTTATCTGTTCGAAAGTGGGAG 58.178 43.478 0.00 0.00 31.20 4.30
6819 8863 2.100605 ATCTGTTCGAAAGTGGGAGC 57.899 50.000 0.00 0.00 0.00 4.70
6820 8864 1.048601 TCTGTTCGAAAGTGGGAGCT 58.951 50.000 0.00 0.00 0.00 4.09
6821 8865 1.151668 CTGTTCGAAAGTGGGAGCTG 58.848 55.000 0.00 0.00 0.00 4.24
6822 8866 0.884704 TGTTCGAAAGTGGGAGCTGC 60.885 55.000 0.00 0.00 0.00 5.25
6823 8867 1.302511 TTCGAAAGTGGGAGCTGCC 60.303 57.895 18.95 18.95 0.00 4.85
6824 8868 1.768684 TTCGAAAGTGGGAGCTGCCT 61.769 55.000 25.93 4.33 36.66 4.75
6825 8869 0.902984 TCGAAAGTGGGAGCTGCCTA 60.903 55.000 25.93 9.07 36.66 3.93
6829 8873 3.393360 GTGGGAGCTGCCTACTGT 58.607 61.111 25.93 0.00 44.25 3.55
6830 8874 2.591915 GTGGGAGCTGCCTACTGTA 58.408 57.895 25.93 0.00 44.25 2.74
6831 8875 0.461961 GTGGGAGCTGCCTACTGTAG 59.538 60.000 25.93 7.87 44.25 2.74
6832 8876 0.041238 TGGGAGCTGCCTACTGTAGT 59.959 55.000 25.93 0.00 36.66 2.73
6833 8877 1.286849 TGGGAGCTGCCTACTGTAGTA 59.713 52.381 25.93 0.00 36.66 1.82
6834 8878 1.957877 GGGAGCTGCCTACTGTAGTAG 59.042 57.143 18.47 11.27 45.68 2.57
6853 8897 5.777850 GTAGGAATCTACTCCCTCTGTTC 57.222 47.826 0.00 0.00 41.88 3.18
6854 8898 3.648739 AGGAATCTACTCCCTCTGTTCC 58.351 50.000 0.00 0.00 35.95 3.62
6855 8899 3.273618 AGGAATCTACTCCCTCTGTTCCT 59.726 47.826 0.00 0.00 39.18 3.36
6856 8900 4.482772 AGGAATCTACTCCCTCTGTTCCTA 59.517 45.833 2.15 0.00 41.43 2.94
6857 8901 5.043281 AGGAATCTACTCCCTCTGTTCCTAA 60.043 44.000 2.15 0.00 41.43 2.69
6858 8902 5.661759 GGAATCTACTCCCTCTGTTCCTAAA 59.338 44.000 0.00 0.00 32.83 1.85
6859 8903 6.327887 GGAATCTACTCCCTCTGTTCCTAAAT 59.672 42.308 0.00 0.00 32.83 1.40
6860 8904 7.509659 GGAATCTACTCCCTCTGTTCCTAAATA 59.490 40.741 0.00 0.00 32.83 1.40
6861 8905 7.842887 ATCTACTCCCTCTGTTCCTAAATAC 57.157 40.000 0.00 0.00 0.00 1.89
6862 8906 6.738635 TCTACTCCCTCTGTTCCTAAATACA 58.261 40.000 0.00 0.00 0.00 2.29
6863 8907 7.186972 TCTACTCCCTCTGTTCCTAAATACAA 58.813 38.462 0.00 0.00 0.00 2.41
6864 8908 6.301169 ACTCCCTCTGTTCCTAAATACAAG 57.699 41.667 0.00 0.00 0.00 3.16
6865 8909 5.785940 ACTCCCTCTGTTCCTAAATACAAGT 59.214 40.000 0.00 0.00 0.00 3.16
6866 8910 6.070710 ACTCCCTCTGTTCCTAAATACAAGTC 60.071 42.308 0.00 0.00 0.00 3.01
6867 8911 6.023603 TCCCTCTGTTCCTAAATACAAGTCT 58.976 40.000 0.00 0.00 0.00 3.24
6868 8912 6.500751 TCCCTCTGTTCCTAAATACAAGTCTT 59.499 38.462 0.00 0.00 0.00 3.01
6869 8913 7.017254 TCCCTCTGTTCCTAAATACAAGTCTTT 59.983 37.037 0.00 0.00 0.00 2.52
6870 8914 7.665974 CCCTCTGTTCCTAAATACAAGTCTTTT 59.334 37.037 0.00 0.00 0.00 2.27
6871 8915 9.067986 CCTCTGTTCCTAAATACAAGTCTTTTT 57.932 33.333 0.00 0.00 0.00 1.94
6885 8929 8.834749 ACAAGTCTTTTTAGAGATTCCACTAC 57.165 34.615 0.00 0.00 0.00 2.73
6886 8930 8.429641 ACAAGTCTTTTTAGAGATTCCACTACA 58.570 33.333 0.00 0.00 0.00 2.74
6887 8931 9.273016 CAAGTCTTTTTAGAGATTCCACTACAA 57.727 33.333 0.00 0.00 0.00 2.41
6888 8932 9.847224 AAGTCTTTTTAGAGATTCCACTACAAA 57.153 29.630 0.00 0.00 0.00 2.83
6889 8933 9.274206 AGTCTTTTTAGAGATTCCACTACAAAC 57.726 33.333 0.00 0.00 0.00 2.93
6890 8934 9.274206 GTCTTTTTAGAGATTCCACTACAAACT 57.726 33.333 0.00 0.00 0.00 2.66
6897 8941 8.362464 AGAGATTCCACTACAAACTACATACA 57.638 34.615 0.00 0.00 0.00 2.29
6911 8955 9.981114 CAAACTACATACAGATGTATATGGACA 57.019 33.333 5.21 0.00 45.42 4.02
7003 9048 1.924731 TCAAGATCAGGGACTCACGT 58.075 50.000 0.00 0.00 34.60 4.49
7202 9248 5.109331 GGGATACAGATCGAAAGAGGCGT 62.109 52.174 0.00 0.00 41.83 5.68
7222 9268 2.771762 GCCTCCTGCCTGGGATCT 60.772 66.667 0.00 0.00 34.56 2.75
7234 9281 4.202567 TGCCTGGGATCTTTCTAACAACTT 60.203 41.667 0.00 0.00 0.00 2.66
7386 9435 3.062466 GGGGGAGAAAGCAACCGC 61.062 66.667 0.00 0.00 38.99 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 8.237811 TGTCAGTCATATGCTTATAGTCTCAA 57.762 34.615 0.00 0.00 0.00 3.02
25 26 7.823745 TGTCAGTCATATGCTTATAGTCTCA 57.176 36.000 0.00 0.00 0.00 3.27
89 90 1.148310 CAAGCGTGTCACACTTAGGG 58.852 55.000 6.33 0.00 31.34 3.53
98 99 0.817229 TGCATTGTCCAAGCGTGTCA 60.817 50.000 0.00 0.00 0.00 3.58
106 107 6.389091 GTCTTCACATTATTGCATTGTCCAA 58.611 36.000 0.00 0.00 0.00 3.53
134 135 1.971695 GGTTGAGACTTTGCCCCCG 60.972 63.158 0.00 0.00 0.00 5.73
149 150 5.233083 TGTGAGAATGAGAACTGATGGTT 57.767 39.130 0.00 0.00 41.40 3.67
157 158 8.668510 ATTGTACCATATGTGAGAATGAGAAC 57.331 34.615 1.24 0.00 0.00 3.01
176 177 8.450964 CCCGAATATTGGATCATGTTATTGTAC 58.549 37.037 0.00 0.00 0.00 2.90
183 184 5.567037 TCTCCCGAATATTGGATCATGTT 57.433 39.130 0.00 0.00 0.00 2.71
200 201 6.599244 TGTTATGTCATGTGATTCTTTCTCCC 59.401 38.462 0.00 0.00 0.00 4.30
231 233 8.885494 AGTTAATCTCTCATGAGTGAATAAGC 57.115 34.615 25.13 20.51 40.98 3.09
318 321 6.035975 GTGCTATTCCCATATTTGTGTTTTGC 59.964 38.462 0.00 0.00 0.00 3.68
333 336 5.311265 TCTCAATCATCATGTGCTATTCCC 58.689 41.667 0.00 0.00 0.00 3.97
336 339 5.183331 GGCATCTCAATCATCATGTGCTATT 59.817 40.000 0.00 0.00 0.00 1.73
340 343 2.621526 TGGCATCTCAATCATCATGTGC 59.378 45.455 0.00 0.00 0.00 4.57
357 360 0.875040 CAAATTTGCAGTGCGTGGCA 60.875 50.000 11.20 0.00 38.46 4.92
364 367 8.176365 TCTTCAAATCAAAACAAATTTGCAGTG 58.824 29.630 18.12 12.58 46.53 3.66
395 398 4.082463 TCAAAAGAGACACCACCAAACAAC 60.082 41.667 0.00 0.00 0.00 3.32
433 438 8.573035 TCTCTATCCCAAAAATTGTTGTTGTAC 58.427 33.333 7.58 0.00 0.00 2.90
545 551 6.663523 ACCTTGTTTCTGAGGGTTTATTATGG 59.336 38.462 0.00 0.00 37.36 2.74
546 552 7.703058 ACCTTGTTTCTGAGGGTTTATTATG 57.297 36.000 0.00 0.00 37.36 1.90
547 553 9.990868 AATACCTTGTTTCTGAGGGTTTATTAT 57.009 29.630 0.00 0.00 37.36 1.28
548 554 9.816787 AAATACCTTGTTTCTGAGGGTTTATTA 57.183 29.630 0.00 0.00 37.36 0.98
549 555 8.721133 AAATACCTTGTTTCTGAGGGTTTATT 57.279 30.769 0.00 0.00 37.36 1.40
554 560 4.105697 TGGAAATACCTTGTTTCTGAGGGT 59.894 41.667 0.00 0.00 39.86 4.34
555 561 4.662278 TGGAAATACCTTGTTTCTGAGGG 58.338 43.478 0.00 0.00 39.86 4.30
556 562 7.938140 TTATGGAAATACCTTGTTTCTGAGG 57.062 36.000 0.00 0.00 39.86 3.86
639 647 4.270566 CACATGCTTCTCAGATTAGCTCAC 59.729 45.833 0.00 0.00 35.93 3.51
651 659 4.531332 GTTGAGTTGAACACATGCTTCTC 58.469 43.478 0.00 0.00 0.00 2.87
652 660 3.002656 CGTTGAGTTGAACACATGCTTCT 59.997 43.478 0.00 0.00 0.00 2.85
653 661 3.291585 CGTTGAGTTGAACACATGCTTC 58.708 45.455 0.00 0.00 0.00 3.86
681 691 0.096976 GTCGGTTCGGCACATGATTG 59.903 55.000 0.00 0.00 0.00 2.67
825 835 3.432759 GTCGCAACCAAAGACGTTC 57.567 52.632 0.00 0.00 0.00 3.95
832 842 1.238625 GGAATCCCGTCGCAACCAAA 61.239 55.000 0.00 0.00 0.00 3.28
1189 1230 1.001406 GATCAGATCGAATCGGGCCTT 59.999 52.381 0.84 0.00 0.00 4.35
1234 1275 0.957888 GACAGAGACAAGCAAGGGGC 60.958 60.000 0.00 0.00 45.30 5.80
1250 1293 2.664851 CCTGCGCGACAAAGGACA 60.665 61.111 12.10 0.00 32.43 4.02
1251 1294 2.357034 TCCTGCGCGACAAAGGAC 60.357 61.111 12.10 0.00 35.14 3.85
1560 2264 1.697432 CAGTAAGACAACACCCTCCCA 59.303 52.381 0.00 0.00 0.00 4.37
1568 2272 2.340210 TTGCAGCCAGTAAGACAACA 57.660 45.000 0.00 0.00 0.00 3.33
1623 2424 8.334632 GTTGCAAGCACAAAATATTTTAACAGT 58.665 29.630 12.98 4.68 0.00 3.55
1680 2490 5.870978 GCATTTATGTGAAAGGCTGTTTGAT 59.129 36.000 0.00 0.00 34.50 2.57
1805 3312 2.575532 CAGGTTCACTTTTCCAGCTCA 58.424 47.619 0.00 0.00 0.00 4.26
1885 3393 4.883585 ACCAGATATACAGTGCAAACATGG 59.116 41.667 0.00 0.00 0.00 3.66
1982 3509 6.884836 GGTGACCCTAACAGAATGAGTTATTT 59.115 38.462 0.00 0.00 39.69 1.40
1992 3519 4.286297 CAGAATGGTGACCCTAACAGAA 57.714 45.455 0.00 0.00 0.00 3.02
2053 3580 9.442047 CAAAAGAGTCTCTACAGGATAACAATT 57.558 33.333 1.88 0.00 0.00 2.32
2239 3809 6.570654 TTACAAAAGGGATTACTAGGAGGG 57.429 41.667 0.00 0.00 0.00 4.30
2251 3821 6.315144 CGTCACATCACATATTACAAAAGGGA 59.685 38.462 0.00 0.00 0.00 4.20
2264 3834 2.426522 CTTTGTCCCGTCACATCACAT 58.573 47.619 0.00 0.00 0.00 3.21
2275 3845 0.252197 CCTAGTTCCCCTTTGTCCCG 59.748 60.000 0.00 0.00 0.00 5.14
2280 3850 3.270877 CACGATTCCTAGTTCCCCTTTG 58.729 50.000 0.00 0.00 0.00 2.77
2281 3851 2.910977 ACACGATTCCTAGTTCCCCTTT 59.089 45.455 0.00 0.00 0.00 3.11
2288 3858 8.008513 ACATAACTATCACACGATTCCTAGTT 57.991 34.615 0.00 0.00 33.39 2.24
2328 3900 3.198068 AGATGTGTGTTGTGTGACTCAC 58.802 45.455 1.86 1.86 46.31 3.51
2329 3901 3.541996 AGATGTGTGTTGTGTGACTCA 57.458 42.857 0.00 0.00 0.00 3.41
2363 3936 9.573133 CAAACAAATAAACCAGAGGATGATTAC 57.427 33.333 0.00 0.00 0.00 1.89
2616 4217 9.739276 ATATCAAGAACAGGAACTACAAAATGA 57.261 29.630 0.00 0.00 36.02 2.57
2662 4265 8.159344 AGTTGACTGATTAGAACAGAAAAAGG 57.841 34.615 0.00 0.00 38.55 3.11
2680 4283 8.321353 TGAAATATCTGTTACCATGAGTTGACT 58.679 33.333 0.00 0.00 0.00 3.41
2814 4418 3.260884 TCGATCTGTTTAAGGAAGGTGCT 59.739 43.478 0.00 0.00 0.00 4.40
2822 4426 4.208047 CGCTCTTGATCGATCTGTTTAAGG 59.792 45.833 25.02 13.90 0.00 2.69
2894 4498 6.956202 TTACCTAACCCAATTTCAACGAAA 57.044 33.333 0.00 0.00 35.94 3.46
3005 4609 5.011090 TGTAATCAGGACAAGAATCCTCG 57.989 43.478 0.00 0.00 46.92 4.63
3079 4683 7.480760 ACATAGAACAAAAATACCAGGCAAT 57.519 32.000 0.00 0.00 0.00 3.56
3080 4684 6.909550 ACATAGAACAAAAATACCAGGCAA 57.090 33.333 0.00 0.00 0.00 4.52
3140 4746 3.621958 GCTCCTTCTCTCTTTTCAGGCAT 60.622 47.826 0.00 0.00 0.00 4.40
3491 5102 6.121776 TGTTAAGAAATGTGCCTCCTTCTA 57.878 37.500 0.00 0.00 0.00 2.10
3522 5133 5.359009 AGTGGCCAAATCTGTTGATGAATAG 59.641 40.000 7.24 0.00 32.44 1.73
3559 5170 4.826274 TGAAAGATCCTCAACCTGTAGG 57.174 45.455 0.00 0.00 42.17 3.18
3589 5201 4.142447 CGGGTGATTTTCGAGAAGAGTCTA 60.142 45.833 0.00 0.00 32.80 2.59
3601 5213 1.165270 CCAGACCACGGGTGATTTTC 58.835 55.000 0.00 0.00 35.25 2.29
3673 5286 2.741145 GAGGAGTAGAAAGGAGAGCCA 58.259 52.381 0.00 0.00 36.29 4.75
3674 5287 1.679153 CGAGGAGTAGAAAGGAGAGCC 59.321 57.143 0.00 0.00 0.00 4.70
3805 5418 4.701651 TGATGTGATGGCTGAAGTTAAAGG 59.298 41.667 0.00 0.00 0.00 3.11
3882 5495 4.222810 CCATATGATATGTGACGGAGGGAA 59.777 45.833 11.20 0.00 0.00 3.97
3893 5506 8.489489 AGTGTCTTCTTGAACCATATGATATGT 58.511 33.333 11.20 0.00 0.00 2.29
3982 5883 8.540388 ACTAGGCTAATTCAACTGTCTAATCAA 58.460 33.333 0.00 0.00 0.00 2.57
3983 5884 8.079211 ACTAGGCTAATTCAACTGTCTAATCA 57.921 34.615 0.00 0.00 0.00 2.57
3987 5888 8.639761 GGAATACTAGGCTAATTCAACTGTCTA 58.360 37.037 16.73 0.00 32.42 2.59
3988 5889 7.419172 GGGAATACTAGGCTAATTCAACTGTCT 60.419 40.741 16.73 0.00 32.42 3.41
3989 5890 6.706716 GGGAATACTAGGCTAATTCAACTGTC 59.293 42.308 16.73 3.16 32.42 3.51
3990 5891 6.387220 AGGGAATACTAGGCTAATTCAACTGT 59.613 38.462 16.73 3.43 32.42 3.55
3991 5892 6.831976 AGGGAATACTAGGCTAATTCAACTG 58.168 40.000 16.73 0.00 32.42 3.16
3992 5893 6.043358 GGAGGGAATACTAGGCTAATTCAACT 59.957 42.308 16.73 14.11 32.42 3.16
3993 5894 6.231951 GGAGGGAATACTAGGCTAATTCAAC 58.768 44.000 16.73 10.84 32.42 3.18
3994 5895 5.011738 CGGAGGGAATACTAGGCTAATTCAA 59.988 44.000 16.73 0.00 32.42 2.69
3995 5896 4.527038 CGGAGGGAATACTAGGCTAATTCA 59.473 45.833 16.73 0.00 32.42 2.57
3996 5897 4.527427 ACGGAGGGAATACTAGGCTAATTC 59.473 45.833 9.50 9.50 0.00 2.17
3997 5898 4.490706 ACGGAGGGAATACTAGGCTAATT 58.509 43.478 0.00 0.00 0.00 1.40
3998 5899 4.087907 GACGGAGGGAATACTAGGCTAAT 58.912 47.826 0.00 0.00 0.00 1.73
3999 5900 3.139770 AGACGGAGGGAATACTAGGCTAA 59.860 47.826 0.00 0.00 0.00 3.09
4000 5901 2.715336 AGACGGAGGGAATACTAGGCTA 59.285 50.000 0.00 0.00 0.00 3.93
4001 5902 1.499870 AGACGGAGGGAATACTAGGCT 59.500 52.381 0.00 0.00 0.00 4.58
4002 5903 1.887854 GAGACGGAGGGAATACTAGGC 59.112 57.143 0.00 0.00 0.00 3.93
4003 5904 3.225177 TGAGACGGAGGGAATACTAGG 57.775 52.381 0.00 0.00 0.00 3.02
4004 5905 6.181190 TGATATGAGACGGAGGGAATACTAG 58.819 44.000 0.00 0.00 0.00 2.57
4005 5906 6.135819 TGATATGAGACGGAGGGAATACTA 57.864 41.667 0.00 0.00 0.00 1.82
4006 5907 4.999310 TGATATGAGACGGAGGGAATACT 58.001 43.478 0.00 0.00 0.00 2.12
4007 5908 5.923733 ATGATATGAGACGGAGGGAATAC 57.076 43.478 0.00 0.00 0.00 1.89
4008 5909 6.551227 CCATATGATATGAGACGGAGGGAATA 59.449 42.308 13.79 0.00 0.00 1.75
4009 5910 5.365025 CCATATGATATGAGACGGAGGGAAT 59.635 44.000 13.79 0.00 0.00 3.01
4010 5911 4.711846 CCATATGATATGAGACGGAGGGAA 59.288 45.833 13.79 0.00 0.00 3.97
4011 5912 4.264397 ACCATATGATATGAGACGGAGGGA 60.264 45.833 13.79 0.00 0.00 4.20
4012 5913 4.026744 ACCATATGATATGAGACGGAGGG 58.973 47.826 13.79 0.00 0.00 4.30
4013 5914 5.185828 TGAACCATATGATATGAGACGGAGG 59.814 44.000 13.79 0.00 0.00 4.30
4014 5915 6.272822 TGAACCATATGATATGAGACGGAG 57.727 41.667 13.79 0.00 0.00 4.63
4015 5916 6.493458 TCTTGAACCATATGATATGAGACGGA 59.507 38.462 13.79 2.85 0.00 4.69
4016 5917 6.691508 TCTTGAACCATATGATATGAGACGG 58.308 40.000 13.79 0.00 0.00 4.79
4017 5918 8.084684 TCTTCTTGAACCATATGATATGAGACG 58.915 37.037 13.79 6.22 0.00 4.18
4018 5919 9.202273 GTCTTCTTGAACCATATGATATGAGAC 57.798 37.037 13.79 11.20 0.00 3.36
4019 5920 8.927411 TGTCTTCTTGAACCATATGATATGAGA 58.073 33.333 13.79 5.51 0.00 3.27
4020 5921 8.986847 GTGTCTTCTTGAACCATATGATATGAG 58.013 37.037 13.79 6.68 0.00 2.90
4021 5922 8.708378 AGTGTCTTCTTGAACCATATGATATGA 58.292 33.333 13.79 0.00 0.00 2.15
4022 5923 8.899427 AGTGTCTTCTTGAACCATATGATATG 57.101 34.615 3.65 5.46 0.00 1.78
4025 5926 9.911788 AATAAGTGTCTTCTTGAACCATATGAT 57.088 29.630 3.65 0.00 0.00 2.45
4026 5927 9.739276 AAATAAGTGTCTTCTTGAACCATATGA 57.261 29.630 3.65 0.00 0.00 2.15
4029 5930 8.792633 CCAAAATAAGTGTCTTCTTGAACCATA 58.207 33.333 0.00 0.00 0.00 2.74
4030 5931 7.255942 CCCAAAATAAGTGTCTTCTTGAACCAT 60.256 37.037 0.00 0.00 0.00 3.55
4031 5932 6.040391 CCCAAAATAAGTGTCTTCTTGAACCA 59.960 38.462 0.00 0.00 0.00 3.67
4032 5933 6.264518 TCCCAAAATAAGTGTCTTCTTGAACC 59.735 38.462 0.00 0.00 0.00 3.62
4033 5934 7.139392 GTCCCAAAATAAGTGTCTTCTTGAAC 58.861 38.462 0.00 0.00 0.00 3.18
4034 5935 6.017440 CGTCCCAAAATAAGTGTCTTCTTGAA 60.017 38.462 0.00 0.00 0.00 2.69
4035 5936 5.468746 CGTCCCAAAATAAGTGTCTTCTTGA 59.531 40.000 0.00 0.00 0.00 3.02
4036 5937 5.334879 CCGTCCCAAAATAAGTGTCTTCTTG 60.335 44.000 0.00 0.00 0.00 3.02
4037 5938 4.760204 CCGTCCCAAAATAAGTGTCTTCTT 59.240 41.667 0.00 0.00 0.00 2.52
4038 5939 4.041198 TCCGTCCCAAAATAAGTGTCTTCT 59.959 41.667 0.00 0.00 0.00 2.85
4039 5940 4.320870 TCCGTCCCAAAATAAGTGTCTTC 58.679 43.478 0.00 0.00 0.00 2.87
4040 5941 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
4041 5942 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4042 5943 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4043 5944 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
4044 5945 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4045 5946 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4046 5947 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
4047 5948 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4048 5949 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4049 5950 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
4050 5951 1.835531 GATACTCCCTCCGTCCCAAAA 59.164 52.381 0.00 0.00 0.00 2.44
4051 5952 1.273381 TGATACTCCCTCCGTCCCAAA 60.273 52.381 0.00 0.00 0.00 3.28
4052 5953 0.337082 TGATACTCCCTCCGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12
4053 5954 0.561184 ATGATACTCCCTCCGTCCCA 59.439 55.000 0.00 0.00 0.00 4.37
4054 5955 1.619332 GAATGATACTCCCTCCGTCCC 59.381 57.143 0.00 0.00 0.00 4.46
4055 5956 2.317040 TGAATGATACTCCCTCCGTCC 58.683 52.381 0.00 0.00 0.00 4.79
4056 5957 4.561105 GATTGAATGATACTCCCTCCGTC 58.439 47.826 0.00 0.00 0.00 4.79
4057 5958 3.005897 CGATTGAATGATACTCCCTCCGT 59.994 47.826 0.00 0.00 0.00 4.69
4058 5959 3.005897 ACGATTGAATGATACTCCCTCCG 59.994 47.826 0.00 0.00 0.00 4.63
4059 5960 4.039245 TGACGATTGAATGATACTCCCTCC 59.961 45.833 0.00 0.00 0.00 4.30
4060 5961 5.201713 TGACGATTGAATGATACTCCCTC 57.798 43.478 0.00 0.00 0.00 4.30
4061 5962 5.614324 TTGACGATTGAATGATACTCCCT 57.386 39.130 0.00 0.00 0.00 4.20
4062 5963 5.991606 TCATTGACGATTGAATGATACTCCC 59.008 40.000 0.00 0.00 34.40 4.30
4063 5964 6.882072 GTCATTGACGATTGAATGATACTCC 58.118 40.000 0.13 0.00 39.97 3.85
4079 5980 2.987413 TGTGGAATTGCGTCATTGAC 57.013 45.000 6.73 6.73 0.00 3.18
4080 5981 5.635417 TTAATGTGGAATTGCGTCATTGA 57.365 34.783 21.16 14.66 32.27 2.57
4081 5982 8.578308 AATATTAATGTGGAATTGCGTCATTG 57.422 30.769 21.16 0.00 32.27 2.82
4082 5983 8.632679 AGAATATTAATGTGGAATTGCGTCATT 58.367 29.630 18.31 18.31 34.02 2.57
4083 5984 8.169977 AGAATATTAATGTGGAATTGCGTCAT 57.830 30.769 0.00 2.61 0.00 3.06
4084 5985 7.566760 AGAATATTAATGTGGAATTGCGTCA 57.433 32.000 0.00 0.00 0.00 4.35
4085 5986 8.856490 AAAGAATATTAATGTGGAATTGCGTC 57.144 30.769 0.00 0.00 0.00 5.19
4086 5987 9.651913 AAAAAGAATATTAATGTGGAATTGCGT 57.348 25.926 0.00 0.00 0.00 5.24
4126 6027 8.863049 GGCTGTACAAACAATAATTTCAGAATG 58.137 33.333 0.00 0.00 34.49 2.67
4226 6127 7.124147 AGGCAAATAACAAGCATTAGGTAACAT 59.876 33.333 0.00 0.00 41.41 2.71
4355 6275 7.886629 AGCAACATGGAATACAAATGTATCT 57.113 32.000 6.53 0.00 40.10 1.98
4373 6293 8.937884 CCATTTCAATTTATGATGAAAGCAACA 58.062 29.630 7.00 0.00 45.61 3.33
4406 6326 9.219603 CTGGACACAAGTAGAAATTTGAGAATA 57.780 33.333 0.00 0.00 0.00 1.75
4416 6336 2.438021 AGTGCCTGGACACAAGTAGAAA 59.562 45.455 18.81 0.00 43.23 2.52
4421 6341 3.118038 TCTTTAAGTGCCTGGACACAAGT 60.118 43.478 18.81 9.34 43.23 3.16
4422 6342 3.476552 TCTTTAAGTGCCTGGACACAAG 58.523 45.455 18.81 14.36 43.23 3.16
4590 6523 4.338012 TGACATCAGCAAATGTGAAGGAT 58.662 39.130 8.53 0.00 39.93 3.24
4591 6524 3.753815 TGACATCAGCAAATGTGAAGGA 58.246 40.909 8.53 0.00 39.93 3.36
4766 6722 6.720309 TCCAAATGATGACCAACTATTCAGA 58.280 36.000 0.00 0.00 0.00 3.27
4816 6772 8.203485 TGCAAGTTTCTTCCTGTAAAATTGATT 58.797 29.630 10.93 0.00 40.98 2.57
5097 7053 7.365652 GGTTATTTTACCATCTCAGAGGGAAGA 60.366 40.741 13.67 0.00 35.26 2.87
5123 7079 7.596494 TCATGCTCCTTATTTCACAAGAAAAG 58.404 34.615 0.00 0.00 46.06 2.27
5216 7224 9.918630 ATTTCACCTGATAAAAATTGAGAAGTG 57.081 29.630 0.00 0.00 0.00 3.16
5217 7225 9.918630 CATTTCACCTGATAAAAATTGAGAAGT 57.081 29.630 0.00 0.00 0.00 3.01
5218 7226 9.918630 ACATTTCACCTGATAAAAATTGAGAAG 57.081 29.630 0.00 0.00 0.00 2.85
5219 7227 9.695526 CACATTTCACCTGATAAAAATTGAGAA 57.304 29.630 0.00 0.00 0.00 2.87
5220 7228 8.859090 ACACATTTCACCTGATAAAAATTGAGA 58.141 29.630 0.00 0.00 0.00 3.27
5394 7402 9.283768 ACATTTGTCAAAGTGAATGTATACAGA 57.716 29.630 11.91 0.00 40.00 3.41
5459 7467 3.924144 TGCCAAAACAATAAGCATGTCC 58.076 40.909 0.00 0.00 0.00 4.02
5550 7558 4.678840 CGGACAACATCATCATCTGACAGA 60.679 45.833 7.80 7.80 36.48 3.41
5728 7736 9.426534 AGCATCACATAGATATAGCCTATACAA 57.573 33.333 0.00 0.00 34.43 2.41
5921 7946 2.323580 GCTGAGCTGCTCCACACAC 61.324 63.158 25.61 6.13 0.00 3.82
5964 7989 3.230134 TCCCAATGGCCAAATATGTAGC 58.770 45.455 10.96 0.00 0.00 3.58
5972 7997 2.875094 CCAAATTCCCAATGGCCAAA 57.125 45.000 10.96 0.00 0.00 3.28
5977 8002 5.302360 CAAGATATGCCAAATTCCCAATGG 58.698 41.667 0.00 0.00 37.29 3.16
6068 8095 1.007038 GTGTGTGCTGTGCCAATGG 60.007 57.895 0.00 0.00 0.00 3.16
6077 8104 8.641155 CAAAAATGATAATGTTAGTGTGTGCTG 58.359 33.333 0.00 0.00 0.00 4.41
6083 8110 8.977505 GTGCAACAAAAATGATAATGTTAGTGT 58.022 29.630 0.00 0.00 34.45 3.55
6254 8297 7.015682 ACCAACCCATGTGTCAAAACAAATATA 59.984 33.333 0.00 0.00 37.08 0.86
6290 8333 9.252962 CTTTTGAATTCAAGCTAAACATCTGTT 57.747 29.630 19.64 0.00 37.19 3.16
6319 8362 5.923204 AGACAAGCATAAACAGCTAGCTAT 58.077 37.500 18.86 2.05 42.53 2.97
6344 8387 7.984002 TGTGTCAAAACAAATATGAACAGTG 57.016 32.000 0.00 0.00 37.08 3.66
6398 8441 5.827797 AGGTTACAGAACAGAATTCAAGCAA 59.172 36.000 8.44 0.00 37.29 3.91
6399 8442 5.239306 CAGGTTACAGAACAGAATTCAAGCA 59.761 40.000 8.44 0.00 37.29 3.91
6438 8481 0.603707 CTTTGAAGTCAGGCTGCGGA 60.604 55.000 10.34 0.00 0.00 5.54
6630 8673 2.968574 TCCCCAAAATAAGCTGCAACAA 59.031 40.909 1.02 0.00 0.00 2.83
6681 8724 4.647611 TCTGACGACCCATGTACAAAATT 58.352 39.130 0.00 0.00 0.00 1.82
6747 8791 4.880696 ACTGCAAGAGAAGGATAATTCAGC 59.119 41.667 0.00 0.00 37.43 4.26
6784 8828 6.876789 TCGAACAGATAAGTTGGCAGAAATAA 59.123 34.615 0.00 0.00 0.00 1.40
6785 8829 6.403049 TCGAACAGATAAGTTGGCAGAAATA 58.597 36.000 0.00 0.00 0.00 1.40
6786 8830 5.245531 TCGAACAGATAAGTTGGCAGAAAT 58.754 37.500 0.00 0.00 0.00 2.17
6787 8831 4.637276 TCGAACAGATAAGTTGGCAGAAA 58.363 39.130 0.00 0.00 0.00 2.52
6788 8832 4.265904 TCGAACAGATAAGTTGGCAGAA 57.734 40.909 0.00 0.00 0.00 3.02
6789 8833 3.953712 TCGAACAGATAAGTTGGCAGA 57.046 42.857 0.00 0.00 0.00 4.26
6790 8834 4.452455 ACTTTCGAACAGATAAGTTGGCAG 59.548 41.667 0.00 0.00 31.16 4.85
6791 8835 4.213270 CACTTTCGAACAGATAAGTTGGCA 59.787 41.667 0.00 0.00 32.14 4.92
6792 8836 4.378459 CCACTTTCGAACAGATAAGTTGGC 60.378 45.833 0.00 0.00 32.14 4.52
6793 8837 4.154195 CCCACTTTCGAACAGATAAGTTGG 59.846 45.833 0.00 0.00 32.41 3.77
6794 8838 4.994852 TCCCACTTTCGAACAGATAAGTTG 59.005 41.667 0.00 0.00 32.14 3.16
6795 8839 5.223449 TCCCACTTTCGAACAGATAAGTT 57.777 39.130 0.00 0.00 32.14 2.66
6796 8840 4.822026 CTCCCACTTTCGAACAGATAAGT 58.178 43.478 0.00 0.00 33.58 2.24
6797 8841 3.619038 GCTCCCACTTTCGAACAGATAAG 59.381 47.826 0.00 0.00 0.00 1.73
6798 8842 3.260884 AGCTCCCACTTTCGAACAGATAA 59.739 43.478 0.00 0.00 0.00 1.75
6799 8843 2.832129 AGCTCCCACTTTCGAACAGATA 59.168 45.455 0.00 0.00 0.00 1.98
6800 8844 1.625818 AGCTCCCACTTTCGAACAGAT 59.374 47.619 0.00 0.00 0.00 2.90
6801 8845 1.048601 AGCTCCCACTTTCGAACAGA 58.951 50.000 0.00 0.00 0.00 3.41
6802 8846 1.151668 CAGCTCCCACTTTCGAACAG 58.848 55.000 0.00 1.46 0.00 3.16
6803 8847 0.884704 GCAGCTCCCACTTTCGAACA 60.885 55.000 0.00 0.00 0.00 3.18
6804 8848 1.578206 GGCAGCTCCCACTTTCGAAC 61.578 60.000 0.00 0.00 0.00 3.95
6805 8849 1.302511 GGCAGCTCCCACTTTCGAA 60.303 57.895 0.00 0.00 0.00 3.71
6806 8850 0.902984 TAGGCAGCTCCCACTTTCGA 60.903 55.000 0.00 0.00 34.51 3.71
6807 8851 0.741221 GTAGGCAGCTCCCACTTTCG 60.741 60.000 0.00 0.00 34.51 3.46
6808 8852 0.615850 AGTAGGCAGCTCCCACTTTC 59.384 55.000 0.00 0.00 34.51 2.62
6809 8853 0.326264 CAGTAGGCAGCTCCCACTTT 59.674 55.000 0.00 0.00 34.51 2.66
6810 8854 0.838122 ACAGTAGGCAGCTCCCACTT 60.838 55.000 0.00 0.00 34.51 3.16
6811 8855 0.041238 TACAGTAGGCAGCTCCCACT 59.959 55.000 0.00 0.00 34.51 4.00
6812 8856 0.461961 CTACAGTAGGCAGCTCCCAC 59.538 60.000 0.00 0.00 34.51 4.61
6813 8857 0.041238 ACTACAGTAGGCAGCTCCCA 59.959 55.000 12.42 0.00 34.51 4.37
6814 8858 1.957877 CTACTACAGTAGGCAGCTCCC 59.042 57.143 12.42 0.00 43.16 4.30
6831 8875 4.585581 GGAACAGAGGGAGTAGATTCCTAC 59.414 50.000 0.00 0.00 44.32 3.18
6832 8876 4.482772 AGGAACAGAGGGAGTAGATTCCTA 59.517 45.833 0.80 0.00 42.03 2.94
6833 8877 3.273618 AGGAACAGAGGGAGTAGATTCCT 59.726 47.826 0.00 0.00 39.67 3.36
6834 8878 3.648739 AGGAACAGAGGGAGTAGATTCC 58.351 50.000 0.00 0.00 35.40 3.01
6835 8879 6.793505 TTTAGGAACAGAGGGAGTAGATTC 57.206 41.667 0.00 0.00 0.00 2.52
6836 8880 7.844779 TGTATTTAGGAACAGAGGGAGTAGATT 59.155 37.037 0.00 0.00 0.00 2.40
6837 8881 7.363031 TGTATTTAGGAACAGAGGGAGTAGAT 58.637 38.462 0.00 0.00 0.00 1.98
6838 8882 6.738635 TGTATTTAGGAACAGAGGGAGTAGA 58.261 40.000 0.00 0.00 0.00 2.59
6839 8883 7.124448 ACTTGTATTTAGGAACAGAGGGAGTAG 59.876 40.741 0.00 0.00 0.00 2.57
6840 8884 6.958192 ACTTGTATTTAGGAACAGAGGGAGTA 59.042 38.462 0.00 0.00 0.00 2.59
6841 8885 5.785940 ACTTGTATTTAGGAACAGAGGGAGT 59.214 40.000 0.00 0.00 0.00 3.85
6842 8886 6.155393 AGACTTGTATTTAGGAACAGAGGGAG 59.845 42.308 0.00 0.00 0.00 4.30
6843 8887 6.023603 AGACTTGTATTTAGGAACAGAGGGA 58.976 40.000 0.00 0.00 0.00 4.20
6844 8888 6.301169 AGACTTGTATTTAGGAACAGAGGG 57.699 41.667 0.00 0.00 0.00 4.30
6845 8889 8.622948 AAAAGACTTGTATTTAGGAACAGAGG 57.377 34.615 0.00 0.00 0.00 3.69
6859 8903 9.924650 GTAGTGGAATCTCTAAAAAGACTTGTA 57.075 33.333 0.00 0.00 0.00 2.41
6860 8904 8.429641 TGTAGTGGAATCTCTAAAAAGACTTGT 58.570 33.333 0.00 0.00 0.00 3.16
6861 8905 8.833231 TGTAGTGGAATCTCTAAAAAGACTTG 57.167 34.615 0.00 0.00 0.00 3.16
6862 8906 9.847224 TTTGTAGTGGAATCTCTAAAAAGACTT 57.153 29.630 0.00 0.00 28.58 3.01
6863 8907 9.274206 GTTTGTAGTGGAATCTCTAAAAAGACT 57.726 33.333 3.22 0.00 30.99 3.24
6864 8908 9.274206 AGTTTGTAGTGGAATCTCTAAAAAGAC 57.726 33.333 3.22 0.00 30.99 3.01
6871 8915 9.470399 TGTATGTAGTTTGTAGTGGAATCTCTA 57.530 33.333 0.00 0.00 0.00 2.43
6872 8916 8.362464 TGTATGTAGTTTGTAGTGGAATCTCT 57.638 34.615 0.00 0.00 0.00 3.10
6873 8917 8.467598 TCTGTATGTAGTTTGTAGTGGAATCTC 58.532 37.037 0.00 0.00 0.00 2.75
6874 8918 8.362464 TCTGTATGTAGTTTGTAGTGGAATCT 57.638 34.615 0.00 0.00 0.00 2.40
6875 8919 9.035607 CATCTGTATGTAGTTTGTAGTGGAATC 57.964 37.037 0.00 0.00 0.00 2.52
6876 8920 8.540388 ACATCTGTATGTAGTTTGTAGTGGAAT 58.460 33.333 0.00 0.00 44.66 3.01
6877 8921 7.903145 ACATCTGTATGTAGTTTGTAGTGGAA 58.097 34.615 0.00 0.00 44.66 3.53
6878 8922 7.476540 ACATCTGTATGTAGTTTGTAGTGGA 57.523 36.000 0.00 0.00 44.66 4.02
6914 8958 6.365247 GCGTCACAGAAATCTACACTCTAAAA 59.635 38.462 0.00 0.00 0.00 1.52
6930 8974 3.000819 AATCGGGGGCGTCACAGA 61.001 61.111 0.00 0.00 0.00 3.41
6931 8975 2.511600 GAATCGGGGGCGTCACAG 60.512 66.667 0.00 0.00 0.00 3.66
7003 9048 7.666623 TGTAGAGTTGTGTTGTGATATCTTCA 58.333 34.615 3.98 0.94 0.00 3.02
7052 9097 2.301870 CGAGGCCCTGGCTTGTATTATA 59.698 50.000 8.29 0.00 38.98 0.98
7222 9268 4.046462 CGACGACCAGAAGTTGTTAGAAA 58.954 43.478 0.00 0.00 43.60 2.52
7234 9281 3.733960 CCGCTGACGACGACCAGA 61.734 66.667 20.20 0.00 43.93 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.