Multiple sequence alignment - TraesCS1A01G089800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G089800 chr1A 100.000 3821 0 0 1 3821 79166267 79170087 0.000000e+00 7057.0
1 TraesCS1A01G089800 chr1A 89.412 340 35 1 3481 3820 546220472 546220810 9.810000e-116 427.0
2 TraesCS1A01G089800 chr1A 92.647 204 15 0 3224 3427 372284435 372284232 1.040000e-75 294.0
3 TraesCS1A01G089800 chr1A 92.574 202 15 0 3226 3427 207423546 207423345 1.340000e-74 291.0
4 TraesCS1A01G089800 chr1A 87.435 191 21 3 5 195 99728376 99728189 2.310000e-52 217.0
5 TraesCS1A01G089800 chr1D 94.546 2677 70 30 197 2822 85178961 85181612 0.000000e+00 4065.0
6 TraesCS1A01G089800 chr1D 80.738 244 26 12 2861 3092 85181622 85181856 1.830000e-38 171.0
7 TraesCS1A01G089800 chr1D 82.703 185 32 0 10 194 465352566 465352382 8.490000e-37 165.0
8 TraesCS1A01G089800 chr1D 80.508 118 21 2 78 194 477231449 477231565 5.260000e-14 89.8
9 TraesCS1A01G089800 chr1B 93.770 1878 73 31 1258 3106 137625031 137626893 0.000000e+00 2780.0
10 TraesCS1A01G089800 chr1B 93.023 516 25 7 735 1241 137624464 137624977 0.000000e+00 743.0
11 TraesCS1A01G089800 chr1B 82.922 527 44 19 205 691 137623869 137624389 2.110000e-117 433.0
12 TraesCS1A01G089800 chr1B 86.842 190 24 1 5 194 630752664 630752476 1.080000e-50 211.0
13 TraesCS1A01G089800 chr1B 86.932 176 23 0 19 194 58319012 58318837 8.370000e-47 198.0
14 TraesCS1A01G089800 chr1B 85.484 186 27 0 9 194 599336068 599336253 1.080000e-45 195.0
15 TraesCS1A01G089800 chr1B 92.381 105 6 2 3115 3218 137626949 137627052 8.550000e-32 148.0
16 TraesCS1A01G089800 chr6A 91.541 331 25 2 3491 3820 571648515 571648843 1.620000e-123 453.0
17 TraesCS1A01G089800 chr6A 92.647 204 15 0 3224 3427 44872950 44873153 1.040000e-75 294.0
18 TraesCS1A01G089800 chr6A 92.647 204 15 0 3224 3427 44890328 44890531 1.040000e-75 294.0
19 TraesCS1A01G089800 chr6A 91.121 214 18 1 3215 3427 372320610 372320397 4.830000e-74 289.0
20 TraesCS1A01G089800 chr6A 95.652 69 3 0 3427 3495 571648317 571648385 1.120000e-20 111.0
21 TraesCS1A01G089800 chr6D 90.937 331 29 1 3491 3820 83569583 83569913 9.740000e-121 444.0
22 TraesCS1A01G089800 chr6D 84.677 124 19 0 77 200 13738760 13738883 1.440000e-24 124.0
23 TraesCS1A01G089800 chr6D 82.645 121 13 7 78 194 160853040 160853156 2.430000e-17 100.0
24 TraesCS1A01G089800 chr5D 90.937 331 29 1 3491 3820 473440462 473440792 9.740000e-121 444.0
25 TraesCS1A01G089800 chr5D 90.332 331 30 2 3491 3820 378673130 378672801 2.110000e-117 433.0
26 TraesCS1A01G089800 chr5D 90.332 331 31 1 3491 3820 450798193 450797863 2.110000e-117 433.0
27 TraesCS1A01G089800 chr5D 88.144 194 19 1 1 194 547251653 547251464 1.070000e-55 228.0
28 TraesCS1A01G089800 chr5D 82.162 185 31 2 11 194 321998299 321998116 1.420000e-34 158.0
29 TraesCS1A01G089800 chr5D 80.541 185 34 2 11 194 550561078 550560895 1.430000e-29 141.0
30 TraesCS1A01G089800 chr3A 90.087 343 27 6 3481 3819 483236683 483237022 4.530000e-119 438.0
31 TraesCS1A01G089800 chr3A 90.634 331 29 2 3491 3820 695775157 695774828 4.530000e-119 438.0
32 TraesCS1A01G089800 chr3A 93.564 202 13 0 3226 3427 454209955 454209754 6.200000e-78 302.0
33 TraesCS1A01G089800 chr3A 87.958 191 22 1 5 195 79392887 79393076 1.380000e-54 224.0
34 TraesCS1A01G089800 chr4D 89.412 340 33 3 3481 3820 480967022 480966686 3.530000e-115 425.0
35 TraesCS1A01G089800 chr4D 81.053 190 35 1 5 194 12531928 12531740 2.380000e-32 150.0
36 TraesCS1A01G089800 chr4D 81.081 185 35 0 10 194 67291092 67291276 8.550000e-32 148.0
37 TraesCS1A01G089800 chr5A 93.137 204 14 0 3224 3427 565706536 565706739 2.230000e-77 300.0
38 TraesCS1A01G089800 chr5A 93.069 202 14 0 3226 3427 162405758 162405557 2.890000e-76 296.0
39 TraesCS1A01G089800 chr4A 93.878 196 11 1 1 195 636095059 636095254 1.040000e-75 294.0
40 TraesCS1A01G089800 chrUn 92.574 202 15 0 3226 3427 212969861 212969660 1.340000e-74 291.0
41 TraesCS1A01G089800 chrUn 82.353 119 19 2 78 195 21276843 21276960 6.750000e-18 102.0
42 TraesCS1A01G089800 chrUn 82.609 115 18 2 81 194 21249131 21249018 2.430000e-17 100.0
43 TraesCS1A01G089800 chr3D 92.784 194 13 1 1 194 595078986 595079178 2.910000e-71 279.0
44 TraesCS1A01G089800 chr5B 91.919 198 15 1 1 197 567427190 567426993 3.760000e-70 276.0
45 TraesCS1A01G089800 chr2D 91.579 190 16 0 5 194 567635045 567635234 2.930000e-66 263.0
46 TraesCS1A01G089800 chr2D 89.231 195 21 0 1 195 543824224 543824418 1.060000e-60 244.0
47 TraesCS1A01G089800 chr2D 85.027 187 28 0 10 196 467063682 467063496 1.400000e-44 191.0
48 TraesCS1A01G089800 chr2D 83.784 185 30 0 10 194 650043569 650043385 3.920000e-40 176.0
49 TraesCS1A01G089800 chr2D 83.333 186 31 0 9 194 317597751 317597936 5.070000e-39 172.0
50 TraesCS1A01G089800 chr6B 88.144 194 23 0 1 194 184761215 184761022 8.260000e-57 231.0
51 TraesCS1A01G089800 chr7B 90.323 155 9 5 45 196 56151170 56151019 8.370000e-47 198.0
52 TraesCS1A01G089800 chr7B 85.789 190 24 3 5 193 56215731 56215918 8.370000e-47 198.0
53 TraesCS1A01G089800 chr7B 83.598 189 30 1 10 198 91209858 91210045 3.920000e-40 176.0
54 TraesCS1A01G089800 chr7B 72.697 304 63 16 1745 2041 429267874 429267584 2.450000e-12 84.2
55 TraesCS1A01G089800 chr4B 88.158 152 16 2 45 195 654027876 654027726 3.030000e-41 180.0
56 TraesCS1A01G089800 chr4B 81.152 191 33 3 5 194 35183265 35183453 2.380000e-32 150.0
57 TraesCS1A01G089800 chr7D 83.511 188 27 4 9 194 597565633 597565818 5.070000e-39 172.0
58 TraesCS1A01G089800 chr7D 85.535 159 23 0 28 186 631319637 631319479 2.360000e-37 167.0
59 TraesCS1A01G089800 chr7D 82.703 185 32 0 10 194 518106634 518106450 8.490000e-37 165.0
60 TraesCS1A01G089800 chr7D 72.368 304 64 17 1745 2041 415682957 415682667 1.140000e-10 78.7
61 TraesCS1A01G089800 chr7A 72.277 303 66 14 1745 2041 477809657 477809367 1.140000e-10 78.7
62 TraesCS1A01G089800 chr7A 96.970 33 1 0 1895 1927 511695960 511695928 5.330000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G089800 chr1A 79166267 79170087 3820 False 7057 7057 100.0000 1 3821 1 chr1A.!!$F1 3820
1 TraesCS1A01G089800 chr1D 85178961 85181856 2895 False 2118 4065 87.6420 197 3092 2 chr1D.!!$F2 2895
2 TraesCS1A01G089800 chr1B 137623869 137627052 3183 False 1026 2780 90.5240 205 3218 4 chr1B.!!$F2 3013
3 TraesCS1A01G089800 chr6A 571648317 571648843 526 False 282 453 93.5965 3427 3820 2 chr6A.!!$F3 393

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.031515 TCCATACAGTCCGGTCCCAT 60.032 55.0 0.00 0.00 0.00 4.00 F
174 175 0.033208 ATCGATGCCCCAAATGTGGT 60.033 50.0 0.00 0.00 44.30 4.16 F
180 181 0.472044 GCCCCAAATGTGGTGGTTTT 59.528 50.0 0.00 0.00 44.30 2.43 F
752 861 0.472925 TGTGGTTGGAGCTAGGACCA 60.473 55.0 9.75 9.75 39.72 4.02 F
1296 1459 0.605319 GTGACCATGGTTTCTCGGCA 60.605 55.0 20.85 7.51 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1176 1299 0.460284 CCGATTCACAGGGAACGGAG 60.460 60.000 16.96 0.0 45.15 4.63 R
1296 1459 0.740868 CCTGCGACATCAATCACCGT 60.741 55.000 0.00 0.0 0.00 4.83 R
1963 2126 2.045536 CCTGGAGCCCTGCTTGAC 60.046 66.667 0.00 0.0 39.88 3.18 R
2741 2936 0.252467 CTCCAGGAACCTCCTCTGGT 60.252 60.000 8.24 0.0 45.66 4.00 R
2849 3044 1.151668 CCGCATTGATCCGAATCTCC 58.848 55.000 0.00 0.0 32.75 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.808558 TGTGATTATTTTGCCAAGTCAGC 58.191 39.130 0.00 0.00 0.00 4.26
23 24 4.523943 TGTGATTATTTTGCCAAGTCAGCT 59.476 37.500 0.00 0.00 0.00 4.24
24 25 5.098211 GTGATTATTTTGCCAAGTCAGCTC 58.902 41.667 0.00 0.00 0.00 4.09
25 26 4.158394 TGATTATTTTGCCAAGTCAGCTCC 59.842 41.667 0.00 0.00 0.00 4.70
26 27 1.999648 ATTTTGCCAAGTCAGCTCCA 58.000 45.000 0.00 0.00 0.00 3.86
27 28 1.999648 TTTTGCCAAGTCAGCTCCAT 58.000 45.000 0.00 0.00 0.00 3.41
28 29 2.877097 TTTGCCAAGTCAGCTCCATA 57.123 45.000 0.00 0.00 0.00 2.74
29 30 2.113860 TTGCCAAGTCAGCTCCATAC 57.886 50.000 0.00 0.00 0.00 2.39
30 31 0.983467 TGCCAAGTCAGCTCCATACA 59.017 50.000 0.00 0.00 0.00 2.29
31 32 1.065926 TGCCAAGTCAGCTCCATACAG 60.066 52.381 0.00 0.00 0.00 2.74
32 33 1.065854 GCCAAGTCAGCTCCATACAGT 60.066 52.381 0.00 0.00 0.00 3.55
33 34 2.898705 CCAAGTCAGCTCCATACAGTC 58.101 52.381 0.00 0.00 0.00 3.51
34 35 2.419297 CCAAGTCAGCTCCATACAGTCC 60.419 54.545 0.00 0.00 0.00 3.85
35 36 1.107114 AGTCAGCTCCATACAGTCCG 58.893 55.000 0.00 0.00 0.00 4.79
36 37 0.103208 GTCAGCTCCATACAGTCCGG 59.897 60.000 0.00 0.00 0.00 5.14
37 38 0.324368 TCAGCTCCATACAGTCCGGT 60.324 55.000 0.00 0.00 0.00 5.28
38 39 0.103208 CAGCTCCATACAGTCCGGTC 59.897 60.000 0.00 0.00 0.00 4.79
39 40 1.043673 AGCTCCATACAGTCCGGTCC 61.044 60.000 0.00 0.00 0.00 4.46
40 41 2.029307 GCTCCATACAGTCCGGTCCC 62.029 65.000 0.00 0.00 0.00 4.46
41 42 0.686441 CTCCATACAGTCCGGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
42 43 0.031515 TCCATACAGTCCGGTCCCAT 60.032 55.000 0.00 0.00 0.00 4.00
43 44 0.106708 CCATACAGTCCGGTCCCATG 59.893 60.000 0.00 0.00 0.00 3.66
44 45 0.830648 CATACAGTCCGGTCCCATGT 59.169 55.000 0.00 0.00 0.00 3.21
45 46 0.830648 ATACAGTCCGGTCCCATGTG 59.169 55.000 0.00 0.00 0.00 3.21
46 47 0.543410 TACAGTCCGGTCCCATGTGT 60.543 55.000 0.00 0.00 0.00 3.72
47 48 1.374947 CAGTCCGGTCCCATGTGTT 59.625 57.895 0.00 0.00 0.00 3.32
48 49 0.611200 CAGTCCGGTCCCATGTGTTA 59.389 55.000 0.00 0.00 0.00 2.41
49 50 0.902531 AGTCCGGTCCCATGTGTTAG 59.097 55.000 0.00 0.00 0.00 2.34
50 51 0.899720 GTCCGGTCCCATGTGTTAGA 59.100 55.000 0.00 0.00 0.00 2.10
51 52 1.276989 GTCCGGTCCCATGTGTTAGAA 59.723 52.381 0.00 0.00 0.00 2.10
52 53 1.979308 TCCGGTCCCATGTGTTAGAAA 59.021 47.619 0.00 0.00 0.00 2.52
53 54 2.027561 TCCGGTCCCATGTGTTAGAAAG 60.028 50.000 0.00 0.00 0.00 2.62
54 55 2.290071 CCGGTCCCATGTGTTAGAAAGT 60.290 50.000 0.00 0.00 0.00 2.66
55 56 2.742053 CGGTCCCATGTGTTAGAAAGTG 59.258 50.000 0.00 0.00 0.00 3.16
56 57 3.556213 CGGTCCCATGTGTTAGAAAGTGA 60.556 47.826 0.00 0.00 0.00 3.41
57 58 4.589908 GGTCCCATGTGTTAGAAAGTGAT 58.410 43.478 0.00 0.00 0.00 3.06
58 59 5.010282 GGTCCCATGTGTTAGAAAGTGATT 58.990 41.667 0.00 0.00 0.00 2.57
59 60 6.177610 GGTCCCATGTGTTAGAAAGTGATTA 58.822 40.000 0.00 0.00 0.00 1.75
60 61 6.657541 GGTCCCATGTGTTAGAAAGTGATTAA 59.342 38.462 0.00 0.00 0.00 1.40
61 62 7.175990 GGTCCCATGTGTTAGAAAGTGATTAAA 59.824 37.037 0.00 0.00 0.00 1.52
62 63 8.739972 GTCCCATGTGTTAGAAAGTGATTAAAT 58.260 33.333 0.00 0.00 0.00 1.40
63 64 8.739039 TCCCATGTGTTAGAAAGTGATTAAATG 58.261 33.333 0.00 0.00 0.00 2.32
64 65 7.975616 CCCATGTGTTAGAAAGTGATTAAATGG 59.024 37.037 0.00 0.00 0.00 3.16
65 66 8.739039 CCATGTGTTAGAAAGTGATTAAATGGA 58.261 33.333 0.00 0.00 0.00 3.41
66 67 9.559958 CATGTGTTAGAAAGTGATTAAATGGAC 57.440 33.333 0.00 0.00 0.00 4.02
67 68 8.918202 TGTGTTAGAAAGTGATTAAATGGACT 57.082 30.769 0.00 0.00 0.00 3.85
78 79 8.506168 GTGATTAAATGGACTAAATCACCTGA 57.494 34.615 13.47 0.00 46.41 3.86
79 80 8.398665 GTGATTAAATGGACTAAATCACCTGAC 58.601 37.037 13.47 0.00 46.41 3.51
80 81 7.556275 TGATTAAATGGACTAAATCACCTGACC 59.444 37.037 0.00 0.00 34.34 4.02
81 82 4.927267 AATGGACTAAATCACCTGACCA 57.073 40.909 0.00 0.00 0.00 4.02
82 83 3.981071 TGGACTAAATCACCTGACCAG 57.019 47.619 0.00 0.00 0.00 4.00
83 84 3.248024 TGGACTAAATCACCTGACCAGT 58.752 45.455 0.00 0.00 0.00 4.00
84 85 3.007940 TGGACTAAATCACCTGACCAGTG 59.992 47.826 0.00 0.00 0.00 3.66
85 86 3.003480 GACTAAATCACCTGACCAGTGC 58.997 50.000 0.00 0.00 0.00 4.40
86 87 2.371841 ACTAAATCACCTGACCAGTGCA 59.628 45.455 0.00 0.00 0.00 4.57
87 88 2.592102 AAATCACCTGACCAGTGCAT 57.408 45.000 0.00 0.00 0.00 3.96
88 89 2.592102 AATCACCTGACCAGTGCATT 57.408 45.000 0.00 0.00 0.00 3.56
89 90 2.592102 ATCACCTGACCAGTGCATTT 57.408 45.000 0.00 0.00 0.00 2.32
90 91 2.363306 TCACCTGACCAGTGCATTTT 57.637 45.000 0.00 0.00 0.00 1.82
91 92 1.955778 TCACCTGACCAGTGCATTTTG 59.044 47.619 0.00 0.00 0.00 2.44
92 93 0.675633 ACCTGACCAGTGCATTTTGC 59.324 50.000 0.00 0.00 45.29 3.68
107 108 6.356757 GCATTTTGCAAAAAGTTTACTGGA 57.643 33.333 27.10 1.37 44.26 3.86
108 109 6.780127 GCATTTTGCAAAAAGTTTACTGGAA 58.220 32.000 27.10 1.16 44.26 3.53
109 110 7.247019 GCATTTTGCAAAAAGTTTACTGGAAA 58.753 30.769 27.10 11.08 44.26 3.13
110 111 7.218014 GCATTTTGCAAAAAGTTTACTGGAAAC 59.782 33.333 27.10 7.42 44.38 2.78
119 120 4.823790 GTTTACTGGAAACACGGTGATT 57.176 40.909 16.29 9.52 45.82 2.57
120 121 5.177725 GTTTACTGGAAACACGGTGATTT 57.822 39.130 16.29 11.23 45.82 2.17
121 122 5.584442 GTTTACTGGAAACACGGTGATTTT 58.416 37.500 16.29 5.76 45.82 1.82
122 123 5.838531 TTACTGGAAACACGGTGATTTTT 57.161 34.783 16.29 4.99 35.60 1.94
123 124 4.040445 ACTGGAAACACGGTGATTTTTG 57.960 40.909 16.29 6.00 35.60 2.44
124 125 2.794350 CTGGAAACACGGTGATTTTTGC 59.206 45.455 16.29 10.73 35.60 3.68
125 126 2.166459 TGGAAACACGGTGATTTTTGCA 59.834 40.909 16.29 13.15 33.40 4.08
126 127 3.181471 TGGAAACACGGTGATTTTTGCAT 60.181 39.130 16.29 0.00 33.40 3.96
127 128 4.038042 TGGAAACACGGTGATTTTTGCATA 59.962 37.500 16.29 0.00 33.40 3.14
128 129 4.985409 GGAAACACGGTGATTTTTGCATAA 59.015 37.500 16.29 0.00 0.00 1.90
129 130 5.463724 GGAAACACGGTGATTTTTGCATAAA 59.536 36.000 16.29 4.76 0.00 1.40
130 131 6.018669 GGAAACACGGTGATTTTTGCATAAAA 60.019 34.615 16.29 7.64 34.13 1.52
131 132 7.307692 GGAAACACGGTGATTTTTGCATAAAAT 60.308 33.333 16.29 15.07 35.82 1.82
132 133 7.489574 AACACGGTGATTTTTGCATAAAATT 57.510 28.000 16.29 1.04 35.82 1.82
133 134 8.594881 AACACGGTGATTTTTGCATAAAATTA 57.405 26.923 16.29 11.51 35.82 1.40
134 135 8.594881 ACACGGTGATTTTTGCATAAAATTAA 57.405 26.923 16.29 8.78 35.82 1.40
135 136 8.707839 ACACGGTGATTTTTGCATAAAATTAAG 58.292 29.630 16.29 12.70 35.82 1.85
136 137 8.167985 CACGGTGATTTTTGCATAAAATTAAGG 58.832 33.333 15.81 11.32 35.82 2.69
137 138 8.091449 ACGGTGATTTTTGCATAAAATTAAGGA 58.909 29.630 15.81 0.00 35.82 3.36
138 139 8.379902 CGGTGATTTTTGCATAAAATTAAGGAC 58.620 33.333 15.81 10.27 35.82 3.85
139 140 9.435688 GGTGATTTTTGCATAAAATTAAGGACT 57.564 29.630 15.81 0.00 35.82 3.85
146 147 9.474313 TTTGCATAAAATTAAGGACTAGATGGT 57.526 29.630 0.00 0.00 0.00 3.55
147 148 9.474313 TTGCATAAAATTAAGGACTAGATGGTT 57.526 29.630 0.00 0.00 0.00 3.67
148 149 9.474313 TGCATAAAATTAAGGACTAGATGGTTT 57.526 29.630 0.00 0.00 0.00 3.27
153 154 7.631717 AATTAAGGACTAGATGGTTTTCTGC 57.368 36.000 0.00 0.00 0.00 4.26
154 155 4.640771 AAGGACTAGATGGTTTTCTGCA 57.359 40.909 0.00 0.00 0.00 4.41
155 156 4.640771 AGGACTAGATGGTTTTCTGCAA 57.359 40.909 0.00 0.00 0.00 4.08
156 157 5.184892 AGGACTAGATGGTTTTCTGCAAT 57.815 39.130 0.00 0.00 0.00 3.56
157 158 5.189180 AGGACTAGATGGTTTTCTGCAATC 58.811 41.667 0.00 0.00 0.00 2.67
158 159 4.034510 GGACTAGATGGTTTTCTGCAATCG 59.965 45.833 0.00 0.00 0.00 3.34
159 160 4.832248 ACTAGATGGTTTTCTGCAATCGA 58.168 39.130 0.00 0.00 0.00 3.59
160 161 5.431765 ACTAGATGGTTTTCTGCAATCGAT 58.568 37.500 0.00 0.00 0.00 3.59
161 162 4.627611 AGATGGTTTTCTGCAATCGATG 57.372 40.909 0.00 0.00 0.00 3.84
172 173 2.212869 CAATCGATGCCCCAAATGTG 57.787 50.000 0.00 0.00 0.00 3.21
173 174 1.113788 AATCGATGCCCCAAATGTGG 58.886 50.000 0.00 0.00 45.53 4.17
174 175 0.033208 ATCGATGCCCCAAATGTGGT 60.033 50.000 0.00 0.00 44.30 4.16
175 176 0.964860 TCGATGCCCCAAATGTGGTG 60.965 55.000 0.00 0.00 44.30 4.17
176 177 1.899617 GATGCCCCAAATGTGGTGG 59.100 57.895 0.00 3.12 44.30 4.61
177 178 0.904394 GATGCCCCAAATGTGGTGGT 60.904 55.000 0.00 0.00 44.30 4.16
178 179 0.473501 ATGCCCCAAATGTGGTGGTT 60.474 50.000 0.00 0.00 44.30 3.67
179 180 0.692419 TGCCCCAAATGTGGTGGTTT 60.692 50.000 0.00 0.00 44.30 3.27
180 181 0.472044 GCCCCAAATGTGGTGGTTTT 59.528 50.000 0.00 0.00 44.30 2.43
181 182 1.133945 GCCCCAAATGTGGTGGTTTTT 60.134 47.619 0.00 0.00 44.30 1.94
201 202 6.969993 TTTTTGCAATTAACTCTAGTGGGT 57.030 33.333 0.00 0.00 0.00 4.51
202 203 5.957842 TTTGCAATTAACTCTAGTGGGTG 57.042 39.130 0.00 0.00 0.00 4.61
217 218 1.378762 GGTGCCTCTGCCCTTAACA 59.621 57.895 0.00 0.00 36.33 2.41
241 242 2.718609 AGCCTGCCATATTAGGTTCCAT 59.281 45.455 0.00 0.00 36.44 3.41
275 276 3.234353 CCATCAGGAGCTCCACTATGTA 58.766 50.000 33.90 13.44 38.89 2.29
280 281 2.516277 AGGAGCTCCACTATGTAGACCT 59.484 50.000 33.90 5.98 38.89 3.85
306 307 1.609932 GCAACATGATTGCACTCGTG 58.390 50.000 21.10 21.10 44.34 4.35
341 356 2.757894 TGCACCCCTAACCAAGAAAA 57.242 45.000 0.00 0.00 0.00 2.29
358 373 9.579932 ACCAAGAAAACTCTATTCTTCTCATTT 57.420 29.630 0.00 0.00 43.41 2.32
413 428 1.202177 GGAATACACATGCCAAGCACG 60.202 52.381 0.00 0.00 43.04 5.34
435 450 1.998444 ATGGGCGCCATGAGGATTGA 61.998 55.000 30.85 0.00 43.39 2.57
443 474 2.941415 GCCATGAGGATTGAAGTTCGGT 60.941 50.000 0.00 0.00 36.89 4.69
444 475 2.679837 CCATGAGGATTGAAGTTCGGTG 59.320 50.000 0.00 0.00 36.89 4.94
454 485 1.818674 GAAGTTCGGTGCCCATTTGAT 59.181 47.619 0.00 0.00 0.00 2.57
465 496 2.224378 GCCCATTTGATCCTCGATCTGA 60.224 50.000 3.49 0.00 39.56 3.27
633 692 6.213600 AGAAACTACTGATAAAGAAGGCTGGA 59.786 38.462 0.00 0.00 0.00 3.86
752 861 0.472925 TGTGGTTGGAGCTAGGACCA 60.473 55.000 9.75 9.75 39.72 4.02
768 877 1.278413 GACCAGGTAAACCTCACCCTC 59.722 57.143 0.00 0.00 46.65 4.30
787 896 6.975772 CACCCTCGTAACAAATTTTCAAAAGA 59.024 34.615 0.00 0.00 0.00 2.52
956 1073 3.114616 CCTCCACTTGCACTCGCG 61.115 66.667 0.00 0.00 42.97 5.87
1176 1299 0.662970 TGCATTTCTTGGTTTCGCGC 60.663 50.000 0.00 0.00 0.00 6.86
1205 1328 2.545526 CCTGTGAATCGGATCGAATTGG 59.454 50.000 0.00 0.00 39.99 3.16
1249 1375 2.159707 CGACGAACAATGCCGATTTCTT 60.160 45.455 2.85 0.00 0.00 2.52
1253 1379 3.666902 CGAACAATGCCGATTTCTTTCGT 60.667 43.478 0.00 0.00 37.42 3.85
1256 1382 3.749088 ACAATGCCGATTTCTTTCGTGTA 59.251 39.130 0.00 0.00 37.42 2.90
1296 1459 0.605319 GTGACCATGGTTTCTCGGCA 60.605 55.000 20.85 7.51 0.00 5.69
1455 1618 0.758685 CCTCCTACCTCTCCTGCCTG 60.759 65.000 0.00 0.00 0.00 4.85
1780 1943 2.509336 CGGACGTGGACCTCATGC 60.509 66.667 0.00 0.00 35.84 4.06
1884 2047 3.868985 ACCACCCGCGACCACTTT 61.869 61.111 8.23 0.00 0.00 2.66
1963 2126 4.148825 CCCGGGAGTTCAGGAGCG 62.149 72.222 18.48 0.00 0.00 5.03
2184 2347 3.814842 TCGAGCTGAACAATCACATTTGT 59.185 39.130 0.00 0.00 41.49 2.83
2263 2426 1.301795 TGCACGCACCGGTAAATCA 60.302 52.632 6.87 0.00 0.00 2.57
2265 2428 1.296056 GCACGCACCGGTAAATCACT 61.296 55.000 6.87 0.00 0.00 3.41
2266 2429 0.719465 CACGCACCGGTAAATCACTC 59.281 55.000 6.87 0.00 0.00 3.51
2267 2430 0.734942 ACGCACCGGTAAATCACTCG 60.735 55.000 6.87 3.55 0.00 4.18
2268 2431 0.734942 CGCACCGGTAAATCACTCGT 60.735 55.000 6.87 0.00 0.00 4.18
2269 2432 1.467883 CGCACCGGTAAATCACTCGTA 60.468 52.381 6.87 0.00 0.00 3.43
2270 2433 2.609350 GCACCGGTAAATCACTCGTAA 58.391 47.619 6.87 0.00 0.00 3.18
2271 2434 2.995258 GCACCGGTAAATCACTCGTAAA 59.005 45.455 6.87 0.00 0.00 2.01
2272 2435 3.619929 GCACCGGTAAATCACTCGTAAAT 59.380 43.478 6.87 0.00 0.00 1.40
2273 2436 4.260091 GCACCGGTAAATCACTCGTAAATC 60.260 45.833 6.87 0.00 0.00 2.17
2274 2437 4.027132 CACCGGTAAATCACTCGTAAATCG 60.027 45.833 6.87 0.00 41.41 3.34
2275 2438 3.060740 CCGGTAAATCACTCGTAAATCGC 60.061 47.826 0.00 0.00 39.67 4.58
2277 2440 4.117685 GGTAAATCACTCGTAAATCGCCT 58.882 43.478 0.00 0.00 39.67 5.52
2280 2443 1.904144 TCACTCGTAAATCGCCTTCG 58.096 50.000 0.00 0.00 39.67 3.79
2307 2470 4.173594 TCTCTATCCAAGCATCCATCCAT 58.826 43.478 0.00 0.00 0.00 3.41
2831 3026 1.372582 GACGGCTGATGATCAAAGCA 58.627 50.000 26.23 13.66 38.73 3.91
2935 3134 2.419673 TGCGCAATGGATTGACTTGTAG 59.580 45.455 8.16 0.00 40.14 2.74
2951 3152 6.216801 ACTTGTAGTCGTAGCCATTATCAA 57.783 37.500 0.00 0.00 0.00 2.57
2974 3175 1.067416 GATGATACGCTCGTGGGCA 59.933 57.895 5.05 1.21 0.00 5.36
2987 3188 2.361104 GGGCACGGCTGATTTGGA 60.361 61.111 0.00 0.00 0.00 3.53
3016 3218 1.076438 TGTCTGAGAGTGAGAGGGGA 58.924 55.000 0.00 0.00 0.00 4.81
3025 3227 0.325671 GTGAGAGGGGATGGGTCAGA 60.326 60.000 0.00 0.00 0.00 3.27
3052 3254 1.524863 CGGGTAGCGGTAGAGGGATG 61.525 65.000 0.00 0.00 0.00 3.51
3053 3255 1.186267 GGGTAGCGGTAGAGGGATGG 61.186 65.000 0.00 0.00 0.00 3.51
3054 3256 0.178970 GGTAGCGGTAGAGGGATGGA 60.179 60.000 0.00 0.00 0.00 3.41
3092 3298 0.738389 CTGGGCACGTCACAGTTTTT 59.262 50.000 8.55 0.00 0.00 1.94
3121 3372 7.553334 TGCGGATTAGTCTCTAATAAAAGTGT 58.447 34.615 2.58 0.00 0.00 3.55
3191 3443 6.226787 TCCTTTTGAAGCAAAACTGAACAAA 58.773 32.000 1.51 0.00 38.24 2.83
3214 3466 1.759293 GATTCGTAGGGCCGTTTCGC 61.759 60.000 1.81 0.00 0.00 4.70
3216 3468 2.433664 CGTAGGGCCGTTTCGCTT 60.434 61.111 1.81 0.00 0.00 4.68
3217 3469 2.736682 CGTAGGGCCGTTTCGCTTG 61.737 63.158 1.81 0.00 0.00 4.01
3218 3470 1.670083 GTAGGGCCGTTTCGCTTGT 60.670 57.895 1.81 0.00 0.00 3.16
3219 3471 0.390209 GTAGGGCCGTTTCGCTTGTA 60.390 55.000 1.81 0.00 0.00 2.41
3220 3472 0.321021 TAGGGCCGTTTCGCTTGTAA 59.679 50.000 1.81 0.00 0.00 2.41
3221 3473 0.322187 AGGGCCGTTTCGCTTGTAAT 60.322 50.000 0.00 0.00 0.00 1.89
3222 3474 0.179174 GGGCCGTTTCGCTTGTAATG 60.179 55.000 0.00 0.00 0.00 1.90
3223 3475 0.800012 GGCCGTTTCGCTTGTAATGA 59.200 50.000 0.00 0.00 0.00 2.57
3224 3476 1.400494 GGCCGTTTCGCTTGTAATGAT 59.600 47.619 0.00 0.00 0.00 2.45
3225 3477 2.159435 GGCCGTTTCGCTTGTAATGATT 60.159 45.455 0.00 0.00 0.00 2.57
3226 3478 3.098636 GCCGTTTCGCTTGTAATGATTC 58.901 45.455 0.00 0.00 0.00 2.52
3227 3479 3.425625 GCCGTTTCGCTTGTAATGATTCA 60.426 43.478 0.00 0.00 0.00 2.57
3228 3480 4.730613 GCCGTTTCGCTTGTAATGATTCAT 60.731 41.667 0.00 0.00 0.00 2.57
3229 3481 4.963953 CCGTTTCGCTTGTAATGATTCATC 59.036 41.667 0.00 0.00 0.00 2.92
3230 3482 4.963953 CGTTTCGCTTGTAATGATTCATCC 59.036 41.667 0.00 0.00 0.00 3.51
3231 3483 5.220662 CGTTTCGCTTGTAATGATTCATCCT 60.221 40.000 0.00 0.00 0.00 3.24
3232 3484 6.019075 CGTTTCGCTTGTAATGATTCATCCTA 60.019 38.462 0.00 0.00 0.00 2.94
3233 3485 7.307396 CGTTTCGCTTGTAATGATTCATCCTAT 60.307 37.037 0.00 0.00 0.00 2.57
3234 3486 7.425577 TTCGCTTGTAATGATTCATCCTATG 57.574 36.000 0.00 0.00 0.00 2.23
3235 3487 5.409520 TCGCTTGTAATGATTCATCCTATGC 59.590 40.000 0.00 2.43 0.00 3.14
3236 3488 5.625251 GCTTGTAATGATTCATCCTATGCG 58.375 41.667 0.00 0.00 0.00 4.73
3237 3489 5.180117 GCTTGTAATGATTCATCCTATGCGT 59.820 40.000 0.00 0.00 0.00 5.24
3238 3490 6.293626 GCTTGTAATGATTCATCCTATGCGTT 60.294 38.462 0.00 0.00 0.00 4.84
3239 3491 6.785488 TGTAATGATTCATCCTATGCGTTC 57.215 37.500 0.00 0.00 0.00 3.95
3240 3492 4.997905 AATGATTCATCCTATGCGTTCG 57.002 40.909 0.00 0.00 0.00 3.95
3241 3493 2.754472 TGATTCATCCTATGCGTTCGG 58.246 47.619 0.00 0.00 0.00 4.30
3242 3494 2.102420 TGATTCATCCTATGCGTTCGGT 59.898 45.455 0.00 0.00 0.00 4.69
3243 3495 2.684001 TTCATCCTATGCGTTCGGTT 57.316 45.000 0.00 0.00 0.00 4.44
3244 3496 2.684001 TCATCCTATGCGTTCGGTTT 57.316 45.000 0.00 0.00 0.00 3.27
3245 3497 3.804786 TCATCCTATGCGTTCGGTTTA 57.195 42.857 0.00 0.00 0.00 2.01
3246 3498 4.330944 TCATCCTATGCGTTCGGTTTAT 57.669 40.909 0.00 0.00 0.00 1.40
3247 3499 4.699637 TCATCCTATGCGTTCGGTTTATT 58.300 39.130 0.00 0.00 0.00 1.40
3248 3500 4.748102 TCATCCTATGCGTTCGGTTTATTC 59.252 41.667 0.00 0.00 0.00 1.75
3249 3501 3.117794 TCCTATGCGTTCGGTTTATTCG 58.882 45.455 0.00 0.00 0.00 3.34
3250 3502 2.220133 CCTATGCGTTCGGTTTATTCGG 59.780 50.000 0.00 0.00 0.00 4.30
3251 3503 1.729284 ATGCGTTCGGTTTATTCGGT 58.271 45.000 0.00 0.00 0.00 4.69
3252 3504 1.510776 TGCGTTCGGTTTATTCGGTT 58.489 45.000 0.00 0.00 0.00 4.44
3253 3505 1.872313 TGCGTTCGGTTTATTCGGTTT 59.128 42.857 0.00 0.00 0.00 3.27
3254 3506 3.062763 TGCGTTCGGTTTATTCGGTTTA 58.937 40.909 0.00 0.00 0.00 2.01
3255 3507 3.120718 TGCGTTCGGTTTATTCGGTTTAC 60.121 43.478 0.00 0.00 0.00 2.01
3256 3508 3.120718 GCGTTCGGTTTATTCGGTTTACA 60.121 43.478 0.00 0.00 0.00 2.41
3257 3509 4.435917 GCGTTCGGTTTATTCGGTTTACAT 60.436 41.667 0.00 0.00 0.00 2.29
3258 3510 5.016985 CGTTCGGTTTATTCGGTTTACATG 58.983 41.667 0.00 0.00 0.00 3.21
3259 3511 5.326292 GTTCGGTTTATTCGGTTTACATGG 58.674 41.667 0.00 0.00 0.00 3.66
3260 3512 4.577875 TCGGTTTATTCGGTTTACATGGT 58.422 39.130 0.00 0.00 0.00 3.55
3261 3513 5.002516 TCGGTTTATTCGGTTTACATGGTT 58.997 37.500 0.00 0.00 0.00 3.67
3262 3514 5.472820 TCGGTTTATTCGGTTTACATGGTTT 59.527 36.000 0.00 0.00 0.00 3.27
3263 3515 5.569823 CGGTTTATTCGGTTTACATGGTTTG 59.430 40.000 0.00 0.00 0.00 2.93
3264 3516 6.568081 CGGTTTATTCGGTTTACATGGTTTGA 60.568 38.462 0.00 0.00 0.00 2.69
3265 3517 7.317390 GGTTTATTCGGTTTACATGGTTTGAT 58.683 34.615 0.00 0.00 0.00 2.57
3266 3518 7.815549 GGTTTATTCGGTTTACATGGTTTGATT 59.184 33.333 0.00 0.00 0.00 2.57
3267 3519 9.198837 GTTTATTCGGTTTACATGGTTTGATTT 57.801 29.630 0.00 0.00 0.00 2.17
3272 3524 7.686519 TCGGTTTACATGGTTTGATTTATACG 58.313 34.615 0.00 0.00 0.00 3.06
3273 3525 6.908284 CGGTTTACATGGTTTGATTTATACGG 59.092 38.462 0.00 0.00 0.00 4.02
3274 3526 7.414319 CGGTTTACATGGTTTGATTTATACGGT 60.414 37.037 0.00 0.00 0.00 4.83
3275 3527 8.245491 GGTTTACATGGTTTGATTTATACGGTT 58.755 33.333 0.00 0.00 0.00 4.44
3276 3528 9.628746 GTTTACATGGTTTGATTTATACGGTTT 57.371 29.630 0.00 0.00 0.00 3.27
3279 3531 8.751302 ACATGGTTTGATTTATACGGTTTTTC 57.249 30.769 0.00 0.00 0.00 2.29
3280 3532 8.361139 ACATGGTTTGATTTATACGGTTTTTCA 58.639 29.630 0.00 0.00 0.00 2.69
3281 3533 8.859156 CATGGTTTGATTTATACGGTTTTTCAG 58.141 33.333 0.00 0.00 0.00 3.02
3282 3534 7.942990 TGGTTTGATTTATACGGTTTTTCAGT 58.057 30.769 0.00 0.00 0.00 3.41
3283 3535 8.414778 TGGTTTGATTTATACGGTTTTTCAGTT 58.585 29.630 0.00 0.00 0.00 3.16
3284 3536 9.251792 GGTTTGATTTATACGGTTTTTCAGTTT 57.748 29.630 0.00 0.00 0.00 2.66
3286 3538 9.804758 TTTGATTTATACGGTTTTTCAGTTTGT 57.195 25.926 0.00 0.00 0.00 2.83
3290 3542 9.849166 ATTTATACGGTTTTTCAGTTTGTATGG 57.151 29.630 0.00 0.00 0.00 2.74
3291 3543 6.887626 ATACGGTTTTTCAGTTTGTATGGT 57.112 33.333 0.00 0.00 0.00 3.55
3292 3544 7.982761 ATACGGTTTTTCAGTTTGTATGGTA 57.017 32.000 0.00 0.00 0.00 3.25
3293 3545 6.887626 ACGGTTTTTCAGTTTGTATGGTAT 57.112 33.333 0.00 0.00 0.00 2.73
3294 3546 7.279750 ACGGTTTTTCAGTTTGTATGGTATT 57.720 32.000 0.00 0.00 0.00 1.89
3295 3547 8.393671 ACGGTTTTTCAGTTTGTATGGTATTA 57.606 30.769 0.00 0.00 0.00 0.98
3296 3548 8.848182 ACGGTTTTTCAGTTTGTATGGTATTAA 58.152 29.630 0.00 0.00 0.00 1.40
3297 3549 9.849166 CGGTTTTTCAGTTTGTATGGTATTAAT 57.151 29.630 0.00 0.00 0.00 1.40
3337 3589 9.171877 TGGTATAAAATTAAAATACGGTTCGGT 57.828 29.630 0.00 0.00 0.00 4.69
3341 3593 7.551455 AAAATTAAAATACGGTTCGGTTTCG 57.449 32.000 0.00 0.00 37.82 3.46
3342 3594 4.660352 TTAAAATACGGTTCGGTTTCGG 57.340 40.909 0.00 0.00 36.95 4.30
3343 3595 2.168326 AAATACGGTTCGGTTTCGGT 57.832 45.000 0.00 0.00 36.95 4.69
3344 3596 3.311486 AAATACGGTTCGGTTTCGGTA 57.689 42.857 0.00 0.00 36.95 4.02
3345 3597 3.525268 AATACGGTTCGGTTTCGGTAT 57.475 42.857 0.00 0.00 36.95 2.73
3346 3598 4.647424 AATACGGTTCGGTTTCGGTATA 57.353 40.909 0.00 0.00 36.95 1.47
3347 3599 4.853924 ATACGGTTCGGTTTCGGTATAT 57.146 40.909 0.00 0.00 36.95 0.86
3348 3600 5.957842 ATACGGTTCGGTTTCGGTATATA 57.042 39.130 0.00 0.00 36.95 0.86
3349 3601 3.964909 ACGGTTCGGTTTCGGTATATAC 58.035 45.455 4.14 4.14 36.95 1.47
3350 3602 3.243401 ACGGTTCGGTTTCGGTATATACC 60.243 47.826 20.39 20.39 42.98 2.73
3351 3603 3.243367 CGGTTCGGTTTCGGTATATACCA 60.243 47.826 27.58 14.40 46.80 3.25
3352 3604 4.692228 GGTTCGGTTTCGGTATATACCAA 58.308 43.478 27.58 18.57 46.80 3.67
3353 3605 5.115480 GGTTCGGTTTCGGTATATACCAAA 58.885 41.667 27.58 22.18 46.80 3.28
3354 3606 5.759763 GGTTCGGTTTCGGTATATACCAAAT 59.240 40.000 27.58 0.00 46.80 2.32
3355 3607 6.260714 GGTTCGGTTTCGGTATATACCAAATT 59.739 38.462 27.58 0.00 46.80 1.82
3356 3608 7.440856 GGTTCGGTTTCGGTATATACCAAATTA 59.559 37.037 27.58 14.29 46.80 1.40
3357 3609 8.992073 GTTCGGTTTCGGTATATACCAAATTAT 58.008 33.333 27.58 0.00 46.80 1.28
3358 3610 9.558396 TTCGGTTTCGGTATATACCAAATTATT 57.442 29.630 27.58 0.00 46.80 1.40
3359 3611 9.558396 TCGGTTTCGGTATATACCAAATTATTT 57.442 29.630 27.58 0.00 46.80 1.40
3360 3612 9.815936 CGGTTTCGGTATATACCAAATTATTTC 57.184 33.333 27.58 14.34 46.80 2.17
3361 3613 9.815936 GGTTTCGGTATATACCAAATTATTTCG 57.184 33.333 27.58 12.15 46.80 3.46
3374 3626 8.966868 ACCAAATTATTTCGATATGGTTTCAGT 58.033 29.630 0.00 0.00 36.32 3.41
3402 3654 6.949578 ACCATAAAAATCAAAGTTGATGCG 57.050 33.333 7.29 0.00 46.60 4.73
3403 3655 6.686630 ACCATAAAAATCAAAGTTGATGCGA 58.313 32.000 7.29 0.00 46.60 5.10
3404 3656 7.151308 ACCATAAAAATCAAAGTTGATGCGAA 58.849 30.769 7.29 0.00 46.60 4.70
3405 3657 7.655328 ACCATAAAAATCAAAGTTGATGCGAAA 59.345 29.630 7.29 0.00 46.60 3.46
3406 3658 8.658609 CCATAAAAATCAAAGTTGATGCGAAAT 58.341 29.630 7.29 0.00 46.60 2.17
3409 3661 7.712264 AAAATCAAAGTTGATGCGAAATTGA 57.288 28.000 7.29 0.00 46.60 2.57
3410 3662 7.712264 AAATCAAAGTTGATGCGAAATTGAA 57.288 28.000 7.29 0.00 46.60 2.69
3411 3663 7.712264 AATCAAAGTTGATGCGAAATTGAAA 57.288 28.000 7.29 0.00 46.60 2.69
3412 3664 7.712264 ATCAAAGTTGATGCGAAATTGAAAA 57.288 28.000 5.74 0.00 45.63 2.29
3413 3665 7.712264 TCAAAGTTGATGCGAAATTGAAAAT 57.288 28.000 0.00 0.00 31.01 1.82
3414 3666 7.565848 TCAAAGTTGATGCGAAATTGAAAATG 58.434 30.769 0.00 0.00 31.01 2.32
3415 3667 7.437565 TCAAAGTTGATGCGAAATTGAAAATGA 59.562 29.630 0.00 0.00 31.01 2.57
3416 3668 6.695292 AGTTGATGCGAAATTGAAAATGAC 57.305 33.333 0.00 0.00 0.00 3.06
3417 3669 6.449698 AGTTGATGCGAAATTGAAAATGACT 58.550 32.000 0.00 0.00 0.00 3.41
3418 3670 6.925165 AGTTGATGCGAAATTGAAAATGACTT 59.075 30.769 0.00 0.00 0.00 3.01
3419 3671 8.081633 AGTTGATGCGAAATTGAAAATGACTTA 58.918 29.630 0.00 0.00 0.00 2.24
3420 3672 8.698854 GTTGATGCGAAATTGAAAATGACTTAA 58.301 29.630 0.00 0.00 0.00 1.85
3421 3673 8.984891 TGATGCGAAATTGAAAATGACTTAAT 57.015 26.923 0.00 0.00 0.00 1.40
3452 3704 2.816958 CTAGCCAGTGCACAGCCG 60.817 66.667 23.53 13.93 41.13 5.52
3453 3705 3.596066 CTAGCCAGTGCACAGCCGT 62.596 63.158 23.53 12.07 41.13 5.68
3568 3955 2.749776 TCATCGTTGAAACTCTTGCGA 58.250 42.857 0.00 0.00 0.00 5.10
3629 4016 4.192317 GACGAACTATTCTTCCTGCCAAT 58.808 43.478 0.00 0.00 0.00 3.16
3636 4023 7.961326 ACTATTCTTCCTGCCAATTAAACAT 57.039 32.000 0.00 0.00 0.00 2.71
3642 4029 8.537728 TCTTCCTGCCAATTAAACATCAATAT 57.462 30.769 0.00 0.00 0.00 1.28
3664 4051 3.006859 TGTGTGCAACTAGACTACATGCT 59.993 43.478 13.24 0.00 38.04 3.79
3671 4058 0.534873 TAGACTACATGCTGCGCCAA 59.465 50.000 4.18 0.00 0.00 4.52
3673 4060 1.982073 GACTACATGCTGCGCCAACC 61.982 60.000 4.18 0.00 0.00 3.77
3689 4076 0.032952 AACCGAGCATACGTGTGTGT 59.967 50.000 14.10 1.58 0.00 3.72
3698 4085 4.082190 AGCATACGTGTGTGTCAATAGTCT 60.082 41.667 14.10 0.00 0.00 3.24
3704 4091 4.376413 CGTGTGTGTCAATAGTCTTTCTGC 60.376 45.833 0.00 0.00 0.00 4.26
3720 4107 6.583806 GTCTTTCTGCCAACTAAACATCAATG 59.416 38.462 0.00 0.00 0.00 2.82
3727 4114 4.681025 CCAACTAAACATCAATGTGTGTGC 59.319 41.667 0.00 0.00 41.61 4.57
3733 4120 5.512753 AACATCAATGTGTGTGCAACTAA 57.487 34.783 0.00 0.00 41.61 2.24
3738 4125 6.055231 TCAATGTGTGTGCAACTAAACTAC 57.945 37.500 0.00 0.00 38.04 2.73
3742 4129 5.107824 TGTGTGTGCAACTAAACTACGTTA 58.892 37.500 0.00 0.00 38.04 3.18
3743 4130 5.754406 TGTGTGTGCAACTAAACTACGTTAT 59.246 36.000 0.00 0.00 38.04 1.89
3767 4154 2.086869 GCCAACTGAGCATATGTGTGT 58.913 47.619 4.29 0.00 0.00 3.72
3768 4155 2.159476 GCCAACTGAGCATATGTGTGTG 60.159 50.000 4.29 0.00 0.00 3.82
3769 4156 2.159476 CCAACTGAGCATATGTGTGTGC 60.159 50.000 4.29 0.00 42.19 4.57
3770 4157 1.742761 ACTGAGCATATGTGTGTGCC 58.257 50.000 4.29 0.00 42.79 5.01
3771 4158 1.003464 ACTGAGCATATGTGTGTGCCA 59.997 47.619 4.29 0.00 42.79 4.92
3772 4159 1.669265 CTGAGCATATGTGTGTGCCAG 59.331 52.381 4.29 0.00 42.79 4.85
3773 4160 1.003464 TGAGCATATGTGTGTGCCAGT 59.997 47.619 4.29 0.00 42.79 4.00
3774 4161 2.235898 TGAGCATATGTGTGTGCCAGTA 59.764 45.455 4.29 0.00 42.79 2.74
3775 4162 2.868583 GAGCATATGTGTGTGCCAGTAG 59.131 50.000 4.29 0.00 42.79 2.57
3776 4163 2.237143 AGCATATGTGTGTGCCAGTAGT 59.763 45.455 4.29 0.00 42.79 2.73
3777 4164 2.609459 GCATATGTGTGTGCCAGTAGTC 59.391 50.000 4.29 0.00 36.56 2.59
3815 4202 1.948104 TGTGTGTGCAACCAGACTAC 58.052 50.000 6.23 0.00 36.30 2.73
3820 4207 2.878406 GTGTGCAACCAGACTACATTGT 59.122 45.455 0.00 0.00 34.36 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.523943 AGCTGACTTGGCAAAATAATCACA 59.476 37.500 0.00 0.00 0.00 3.58
1 2 5.064441 AGCTGACTTGGCAAAATAATCAC 57.936 39.130 0.00 0.00 0.00 3.06
4 5 4.088634 TGGAGCTGACTTGGCAAAATAAT 58.911 39.130 0.00 0.00 0.00 1.28
6 7 3.153369 TGGAGCTGACTTGGCAAAATA 57.847 42.857 0.00 0.00 0.00 1.40
7 8 1.999648 TGGAGCTGACTTGGCAAAAT 58.000 45.000 0.00 0.00 0.00 1.82
8 9 1.999648 ATGGAGCTGACTTGGCAAAA 58.000 45.000 0.00 0.00 0.00 2.44
9 10 2.224744 TGTATGGAGCTGACTTGGCAAA 60.225 45.455 0.00 0.00 0.00 3.68
10 11 1.350684 TGTATGGAGCTGACTTGGCAA 59.649 47.619 0.00 0.00 0.00 4.52
11 12 0.983467 TGTATGGAGCTGACTTGGCA 59.017 50.000 0.00 0.00 0.00 4.92
12 13 1.065854 ACTGTATGGAGCTGACTTGGC 60.066 52.381 0.00 0.00 0.00 4.52
13 14 2.419297 GGACTGTATGGAGCTGACTTGG 60.419 54.545 0.00 0.00 0.00 3.61
14 15 2.736719 CGGACTGTATGGAGCTGACTTG 60.737 54.545 0.00 0.00 0.00 3.16
15 16 1.478510 CGGACTGTATGGAGCTGACTT 59.521 52.381 0.00 0.00 0.00 3.01
16 17 1.107114 CGGACTGTATGGAGCTGACT 58.893 55.000 0.00 0.00 0.00 3.41
17 18 0.103208 CCGGACTGTATGGAGCTGAC 59.897 60.000 0.00 0.00 0.00 3.51
18 19 0.324368 ACCGGACTGTATGGAGCTGA 60.324 55.000 9.46 0.00 0.00 4.26
19 20 0.103208 GACCGGACTGTATGGAGCTG 59.897 60.000 9.46 0.00 0.00 4.24
20 21 1.043673 GGACCGGACTGTATGGAGCT 61.044 60.000 9.46 0.00 0.00 4.09
21 22 1.442148 GGACCGGACTGTATGGAGC 59.558 63.158 9.46 0.00 0.00 4.70
22 23 0.686441 TGGGACCGGACTGTATGGAG 60.686 60.000 9.46 0.00 0.00 3.86
23 24 0.031515 ATGGGACCGGACTGTATGGA 60.032 55.000 9.46 0.00 0.00 3.41
24 25 0.106708 CATGGGACCGGACTGTATGG 59.893 60.000 9.46 0.00 0.00 2.74
25 26 0.830648 ACATGGGACCGGACTGTATG 59.169 55.000 9.46 10.87 0.00 2.39
26 27 0.830648 CACATGGGACCGGACTGTAT 59.169 55.000 9.46 0.00 0.00 2.29
27 28 0.543410 ACACATGGGACCGGACTGTA 60.543 55.000 9.46 0.00 0.00 2.74
28 29 1.415672 AACACATGGGACCGGACTGT 61.416 55.000 9.46 0.00 0.00 3.55
29 30 0.611200 TAACACATGGGACCGGACTG 59.389 55.000 9.46 0.00 0.00 3.51
30 31 0.902531 CTAACACATGGGACCGGACT 59.097 55.000 9.46 0.00 0.00 3.85
31 32 0.899720 TCTAACACATGGGACCGGAC 59.100 55.000 9.46 0.00 0.00 4.79
32 33 1.646912 TTCTAACACATGGGACCGGA 58.353 50.000 9.46 0.00 0.00 5.14
33 34 2.290071 ACTTTCTAACACATGGGACCGG 60.290 50.000 0.00 0.00 0.00 5.28
34 35 2.742053 CACTTTCTAACACATGGGACCG 59.258 50.000 0.00 0.00 0.00 4.79
35 36 4.015872 TCACTTTCTAACACATGGGACC 57.984 45.455 0.00 0.00 0.00 4.46
36 37 7.681939 TTAATCACTTTCTAACACATGGGAC 57.318 36.000 0.00 0.00 0.00 4.46
37 38 8.739039 CATTTAATCACTTTCTAACACATGGGA 58.261 33.333 0.00 0.00 0.00 4.37
38 39 7.975616 CCATTTAATCACTTTCTAACACATGGG 59.024 37.037 0.00 0.00 0.00 4.00
39 40 8.739039 TCCATTTAATCACTTTCTAACACATGG 58.261 33.333 0.00 0.00 0.00 3.66
40 41 9.559958 GTCCATTTAATCACTTTCTAACACATG 57.440 33.333 0.00 0.00 0.00 3.21
41 42 9.520515 AGTCCATTTAATCACTTTCTAACACAT 57.479 29.630 0.00 0.00 0.00 3.21
42 43 8.918202 AGTCCATTTAATCACTTTCTAACACA 57.082 30.769 0.00 0.00 0.00 3.72
54 55 7.556275 GGTCAGGTGATTTAGTCCATTTAATCA 59.444 37.037 0.00 0.00 35.33 2.57
55 56 7.556275 TGGTCAGGTGATTTAGTCCATTTAATC 59.444 37.037 0.00 0.00 0.00 1.75
56 57 7.410174 TGGTCAGGTGATTTAGTCCATTTAAT 58.590 34.615 0.00 0.00 0.00 1.40
57 58 6.785076 TGGTCAGGTGATTTAGTCCATTTAA 58.215 36.000 0.00 0.00 0.00 1.52
58 59 6.012858 ACTGGTCAGGTGATTTAGTCCATTTA 60.013 38.462 2.87 0.00 0.00 1.40
59 60 5.222130 ACTGGTCAGGTGATTTAGTCCATTT 60.222 40.000 2.87 0.00 0.00 2.32
60 61 4.289672 ACTGGTCAGGTGATTTAGTCCATT 59.710 41.667 2.87 0.00 0.00 3.16
61 62 3.846588 ACTGGTCAGGTGATTTAGTCCAT 59.153 43.478 2.87 0.00 0.00 3.41
62 63 3.007940 CACTGGTCAGGTGATTTAGTCCA 59.992 47.826 2.87 0.00 36.89 4.02
63 64 3.600388 CACTGGTCAGGTGATTTAGTCC 58.400 50.000 2.87 0.00 36.89 3.85
64 65 3.003480 GCACTGGTCAGGTGATTTAGTC 58.997 50.000 2.87 0.00 36.89 2.59
65 66 2.371841 TGCACTGGTCAGGTGATTTAGT 59.628 45.455 2.87 0.00 36.89 2.24
66 67 3.057969 TGCACTGGTCAGGTGATTTAG 57.942 47.619 2.87 0.00 36.89 1.85
67 68 3.719268 ATGCACTGGTCAGGTGATTTA 57.281 42.857 2.87 0.00 36.89 1.40
68 69 2.592102 ATGCACTGGTCAGGTGATTT 57.408 45.000 2.87 0.00 36.89 2.17
69 70 2.592102 AATGCACTGGTCAGGTGATT 57.408 45.000 2.87 0.00 36.89 2.57
70 71 2.559668 CAAAATGCACTGGTCAGGTGAT 59.440 45.455 2.87 0.00 36.89 3.06
71 72 1.955778 CAAAATGCACTGGTCAGGTGA 59.044 47.619 2.87 0.00 36.89 4.02
72 73 1.603678 GCAAAATGCACTGGTCAGGTG 60.604 52.381 2.87 0.00 44.26 4.00
73 74 0.675633 GCAAAATGCACTGGTCAGGT 59.324 50.000 2.87 0.00 44.26 4.00
74 75 3.502237 GCAAAATGCACTGGTCAGG 57.498 52.632 2.87 0.00 44.26 3.86
84 85 6.356757 TCCAGTAAACTTTTTGCAAAATGC 57.643 33.333 28.22 16.92 45.29 3.56
85 86 8.233190 TGTTTCCAGTAAACTTTTTGCAAAATG 58.767 29.630 27.22 27.22 46.42 2.32
86 87 8.233868 GTGTTTCCAGTAAACTTTTTGCAAAAT 58.766 29.630 24.39 12.59 46.42 1.82
87 88 7.569591 CGTGTTTCCAGTAAACTTTTTGCAAAA 60.570 33.333 20.46 20.46 46.42 2.44
88 89 6.128795 CGTGTTTCCAGTAAACTTTTTGCAAA 60.129 34.615 8.05 8.05 46.42 3.68
89 90 5.346281 CGTGTTTCCAGTAAACTTTTTGCAA 59.654 36.000 0.00 0.00 46.42 4.08
90 91 4.859798 CGTGTTTCCAGTAAACTTTTTGCA 59.140 37.500 0.00 0.00 46.42 4.08
91 92 4.266739 CCGTGTTTCCAGTAAACTTTTTGC 59.733 41.667 0.00 0.00 46.42 3.68
92 93 5.287513 CACCGTGTTTCCAGTAAACTTTTTG 59.712 40.000 0.00 0.00 46.42 2.44
93 94 5.183522 TCACCGTGTTTCCAGTAAACTTTTT 59.816 36.000 0.00 0.00 46.42 1.94
94 95 4.701171 TCACCGTGTTTCCAGTAAACTTTT 59.299 37.500 0.00 0.00 46.42 2.27
95 96 4.263435 TCACCGTGTTTCCAGTAAACTTT 58.737 39.130 0.00 0.00 46.42 2.66
96 97 3.876341 TCACCGTGTTTCCAGTAAACTT 58.124 40.909 0.00 0.00 46.42 2.66
97 98 3.547054 TCACCGTGTTTCCAGTAAACT 57.453 42.857 0.00 0.00 46.42 2.66
98 99 4.823790 AATCACCGTGTTTCCAGTAAAC 57.176 40.909 0.00 0.00 46.46 2.01
99 100 5.838531 AAAATCACCGTGTTTCCAGTAAA 57.161 34.783 0.00 0.00 0.00 2.01
100 101 5.583495 CAAAAATCACCGTGTTTCCAGTAA 58.417 37.500 0.00 0.00 0.00 2.24
101 102 4.498345 GCAAAAATCACCGTGTTTCCAGTA 60.498 41.667 0.00 0.00 0.00 2.74
102 103 3.736740 GCAAAAATCACCGTGTTTCCAGT 60.737 43.478 0.00 0.00 0.00 4.00
103 104 2.794350 GCAAAAATCACCGTGTTTCCAG 59.206 45.455 0.00 0.00 0.00 3.86
104 105 2.166459 TGCAAAAATCACCGTGTTTCCA 59.834 40.909 0.00 0.00 0.00 3.53
105 106 2.815478 TGCAAAAATCACCGTGTTTCC 58.185 42.857 0.00 0.00 0.00 3.13
106 107 6.517914 TTTATGCAAAAATCACCGTGTTTC 57.482 33.333 0.00 0.00 0.00 2.78
107 108 6.910536 TTTTATGCAAAAATCACCGTGTTT 57.089 29.167 0.00 0.00 30.69 2.83
108 109 7.489574 AATTTTATGCAAAAATCACCGTGTT 57.510 28.000 15.31 0.00 37.20 3.32
109 110 8.594881 TTAATTTTATGCAAAAATCACCGTGT 57.405 26.923 15.31 5.75 37.20 4.49
110 111 8.167985 CCTTAATTTTATGCAAAAATCACCGTG 58.832 33.333 15.31 0.00 37.20 4.94
111 112 8.091449 TCCTTAATTTTATGCAAAAATCACCGT 58.909 29.630 15.31 6.70 37.20 4.83
112 113 8.379902 GTCCTTAATTTTATGCAAAAATCACCG 58.620 33.333 15.31 7.98 37.20 4.94
113 114 9.435688 AGTCCTTAATTTTATGCAAAAATCACC 57.564 29.630 15.31 5.99 37.20 4.02
120 121 9.474313 ACCATCTAGTCCTTAATTTTATGCAAA 57.526 29.630 0.00 0.00 0.00 3.68
121 122 9.474313 AACCATCTAGTCCTTAATTTTATGCAA 57.526 29.630 0.00 0.00 0.00 4.08
122 123 9.474313 AAACCATCTAGTCCTTAATTTTATGCA 57.526 29.630 0.00 0.00 0.00 3.96
127 128 8.523658 GCAGAAAACCATCTAGTCCTTAATTTT 58.476 33.333 0.00 0.00 0.00 1.82
128 129 7.669722 TGCAGAAAACCATCTAGTCCTTAATTT 59.330 33.333 0.00 0.00 0.00 1.82
129 130 7.175104 TGCAGAAAACCATCTAGTCCTTAATT 58.825 34.615 0.00 0.00 0.00 1.40
130 131 6.721318 TGCAGAAAACCATCTAGTCCTTAAT 58.279 36.000 0.00 0.00 0.00 1.40
131 132 6.121776 TGCAGAAAACCATCTAGTCCTTAA 57.878 37.500 0.00 0.00 0.00 1.85
132 133 5.755409 TGCAGAAAACCATCTAGTCCTTA 57.245 39.130 0.00 0.00 0.00 2.69
133 134 4.640771 TGCAGAAAACCATCTAGTCCTT 57.359 40.909 0.00 0.00 0.00 3.36
134 135 4.640771 TTGCAGAAAACCATCTAGTCCT 57.359 40.909 0.00 0.00 0.00 3.85
135 136 4.034510 CGATTGCAGAAAACCATCTAGTCC 59.965 45.833 0.00 0.00 0.00 3.85
136 137 4.870426 TCGATTGCAGAAAACCATCTAGTC 59.130 41.667 0.00 0.00 0.00 2.59
137 138 4.832248 TCGATTGCAGAAAACCATCTAGT 58.168 39.130 0.00 0.00 0.00 2.57
138 139 5.745514 CATCGATTGCAGAAAACCATCTAG 58.254 41.667 0.00 0.00 0.00 2.43
139 140 5.739752 CATCGATTGCAGAAAACCATCTA 57.260 39.130 0.00 0.00 0.00 1.98
140 141 4.627611 CATCGATTGCAGAAAACCATCT 57.372 40.909 0.00 0.00 0.00 2.90
152 153 4.982952 CCACATTTGGGGCATCGATTGC 62.983 54.545 0.00 3.05 41.73 3.56
153 154 1.202440 CCACATTTGGGGCATCGATTG 60.202 52.381 0.00 0.00 39.57 2.67
154 155 1.113788 CCACATTTGGGGCATCGATT 58.886 50.000 0.00 0.00 39.57 3.34
155 156 2.811307 CCACATTTGGGGCATCGAT 58.189 52.632 0.00 0.00 39.57 3.59
156 157 4.335214 CCACATTTGGGGCATCGA 57.665 55.556 0.00 0.00 39.57 3.59
157 158 1.947597 CCACCACATTTGGGGCATCG 61.948 60.000 2.32 0.00 46.42 3.84
158 159 0.904394 ACCACCACATTTGGGGCATC 60.904 55.000 2.32 0.00 46.42 3.91
159 160 0.473501 AACCACCACATTTGGGGCAT 60.474 50.000 2.32 0.00 46.42 4.40
160 161 0.692419 AAACCACCACATTTGGGGCA 60.692 50.000 2.32 0.00 46.42 5.36
161 162 0.472044 AAAACCACCACATTTGGGGC 59.528 50.000 2.32 0.00 46.42 5.80
178 179 6.737346 GCACCCACTAGAGTTAATTGCAAAAA 60.737 38.462 1.71 0.00 0.00 1.94
179 180 5.278758 GCACCCACTAGAGTTAATTGCAAAA 60.279 40.000 1.71 0.00 0.00 2.44
180 181 4.217550 GCACCCACTAGAGTTAATTGCAAA 59.782 41.667 1.71 0.00 0.00 3.68
181 182 3.756434 GCACCCACTAGAGTTAATTGCAA 59.244 43.478 0.00 0.00 0.00 4.08
182 183 3.343617 GCACCCACTAGAGTTAATTGCA 58.656 45.455 0.00 0.00 0.00 4.08
183 184 2.683362 GGCACCCACTAGAGTTAATTGC 59.317 50.000 0.00 0.00 0.00 3.56
184 185 4.080863 AGAGGCACCCACTAGAGTTAATTG 60.081 45.833 0.00 0.00 0.00 2.32
185 186 4.080863 CAGAGGCACCCACTAGAGTTAATT 60.081 45.833 0.00 0.00 0.00 1.40
186 187 3.452627 CAGAGGCACCCACTAGAGTTAAT 59.547 47.826 0.00 0.00 0.00 1.40
187 188 2.832129 CAGAGGCACCCACTAGAGTTAA 59.168 50.000 0.00 0.00 0.00 2.01
188 189 2.457598 CAGAGGCACCCACTAGAGTTA 58.542 52.381 0.00 0.00 0.00 2.24
189 190 1.270907 CAGAGGCACCCACTAGAGTT 58.729 55.000 0.00 0.00 0.00 3.01
190 191 1.261238 GCAGAGGCACCCACTAGAGT 61.261 60.000 0.00 0.00 40.72 3.24
191 192 1.519719 GCAGAGGCACCCACTAGAG 59.480 63.158 0.00 0.00 40.72 2.43
192 193 1.990060 GGCAGAGGCACCCACTAGA 60.990 63.158 0.00 0.00 43.71 2.43
193 194 2.586792 GGCAGAGGCACCCACTAG 59.413 66.667 0.00 0.00 43.71 2.57
194 195 3.009115 GGGCAGAGGCACCCACTA 61.009 66.667 0.00 0.00 46.22 2.74
200 201 1.839424 AATGTTAAGGGCAGAGGCAC 58.161 50.000 0.00 0.00 46.58 5.01
201 202 2.683742 GCTAATGTTAAGGGCAGAGGCA 60.684 50.000 0.00 0.00 43.71 4.75
202 203 1.950216 GCTAATGTTAAGGGCAGAGGC 59.050 52.381 0.00 0.00 40.13 4.70
217 218 4.353788 TGGAACCTAATATGGCAGGCTAAT 59.646 41.667 0.00 0.00 35.14 1.73
275 276 4.767578 ATCATGTTGCAGATACAGGTCT 57.232 40.909 2.00 0.00 0.00 3.85
341 356 7.118971 GCTTGACACAAATGAGAAGAATAGAGT 59.881 37.037 0.00 0.00 0.00 3.24
358 373 3.943381 GGATGATCTCATTGCTTGACACA 59.057 43.478 0.00 0.00 36.57 3.72
423 438 2.679837 CACCGAACTTCAATCCTCATGG 59.320 50.000 0.00 0.00 0.00 3.66
443 474 1.770658 AGATCGAGGATCAAATGGGCA 59.229 47.619 8.21 0.00 41.12 5.36
444 475 2.149578 CAGATCGAGGATCAAATGGGC 58.850 52.381 8.21 0.00 41.12 5.36
454 485 3.181475 CGGAAAAAGGATCAGATCGAGGA 60.181 47.826 4.23 0.00 0.00 3.71
714 780 6.186957 ACCACATCACTTGCCATAGAAAATA 58.813 36.000 0.00 0.00 0.00 1.40
726 792 1.901591 AGCTCCAACCACATCACTTG 58.098 50.000 0.00 0.00 0.00 3.16
731 797 1.134371 GGTCCTAGCTCCAACCACATC 60.134 57.143 0.00 0.00 0.00 3.06
787 896 3.881220 TCCAACGTTTCTCTCTGGTTTT 58.119 40.909 0.00 0.00 0.00 2.43
894 1011 3.041946 AGGTGTGGACTGATAAGATCCC 58.958 50.000 0.00 0.00 0.00 3.85
956 1073 2.578981 GGAACGAGCGGACGTAGC 60.579 66.667 7.34 7.34 45.83 3.58
1176 1299 0.460284 CCGATTCACAGGGAACGGAG 60.460 60.000 16.96 0.00 45.15 4.63
1205 1328 6.089551 TCGTGATCAATCTCGAGAAAACTTTC 59.910 38.462 20.91 11.97 44.60 2.62
1253 1379 2.359531 TCGACGTGGATGCATACATACA 59.640 45.455 16.33 0.00 45.25 2.29
1256 1382 2.407090 CATCGACGTGGATGCATACAT 58.593 47.619 24.62 0.00 37.59 2.29
1296 1459 0.740868 CCTGCGACATCAATCACCGT 60.741 55.000 0.00 0.00 0.00 4.83
1716 1879 4.648626 TGCAGCAGGCTCCACACC 62.649 66.667 0.00 0.00 45.15 4.16
1780 1943 2.202797 CCGGTCCATGCAGTCGAG 60.203 66.667 0.00 0.00 0.00 4.04
1860 2023 4.367023 TCGCGGGTGGTGCAGTAC 62.367 66.667 6.13 0.00 0.00 2.73
1963 2126 2.045536 CCTGGAGCCCTGCTTGAC 60.046 66.667 0.00 0.00 39.88 3.18
2184 2347 1.008327 TCCTCCTCCCAGTTCTGCATA 59.992 52.381 0.00 0.00 0.00 3.14
2263 2426 1.471684 AGACGAAGGCGATTTACGAGT 59.528 47.619 0.00 0.00 45.77 4.18
2265 2428 3.562973 AGATAGACGAAGGCGATTTACGA 59.437 43.478 0.00 0.00 45.77 3.43
2266 2429 3.886549 AGATAGACGAAGGCGATTTACG 58.113 45.455 0.00 0.00 45.66 3.18
2267 2430 5.110940 AGAGATAGACGAAGGCGATTTAC 57.889 43.478 0.00 0.00 41.64 2.01
2268 2431 6.093771 GGATAGAGATAGACGAAGGCGATTTA 59.906 42.308 0.00 0.00 41.64 1.40
2269 2432 5.106078 GGATAGAGATAGACGAAGGCGATTT 60.106 44.000 0.00 0.00 41.64 2.17
2270 2433 4.396790 GGATAGAGATAGACGAAGGCGATT 59.603 45.833 0.00 0.00 41.64 3.34
2271 2434 3.942748 GGATAGAGATAGACGAAGGCGAT 59.057 47.826 0.00 0.00 41.64 4.58
2272 2435 3.244457 TGGATAGAGATAGACGAAGGCGA 60.244 47.826 0.00 0.00 41.64 5.54
2273 2436 3.075148 TGGATAGAGATAGACGAAGGCG 58.925 50.000 0.00 0.00 44.79 5.52
2274 2437 4.617298 GCTTGGATAGAGATAGACGAAGGC 60.617 50.000 0.00 0.00 0.00 4.35
2275 2438 4.520874 TGCTTGGATAGAGATAGACGAAGG 59.479 45.833 0.00 0.00 0.00 3.46
2277 2440 5.184096 GGATGCTTGGATAGAGATAGACGAA 59.816 44.000 0.00 0.00 0.00 3.85
2280 2443 5.991933 TGGATGCTTGGATAGAGATAGAC 57.008 43.478 0.00 0.00 0.00 2.59
2307 2470 0.813610 CGTTAGCCGCCATGGATTGA 60.814 55.000 18.40 0.00 42.00 2.57
2741 2936 0.252467 CTCCAGGAACCTCCTCTGGT 60.252 60.000 8.24 0.00 45.66 4.00
2831 3026 2.676342 CTCCTTACGTGCGGCTTAATTT 59.324 45.455 0.00 0.00 0.00 1.82
2849 3044 1.151668 CCGCATTGATCCGAATCTCC 58.848 55.000 0.00 0.00 32.75 3.71
2935 3134 4.883083 TCATCCTTGATAATGGCTACGAC 58.117 43.478 0.00 0.00 0.00 4.34
2951 3152 1.270826 CCACGAGCGTATCATCATCCT 59.729 52.381 0.00 0.00 0.00 3.24
2974 3175 4.002797 GGCTTCCAAATCAGCCGT 57.997 55.556 0.00 0.00 46.19 5.68
2987 3188 3.326006 TCACTCTCAGACAATGAAGGCTT 59.674 43.478 0.00 0.00 37.52 4.35
3016 3218 3.018901 GGCCCCATTCTGACCCAT 58.981 61.111 0.00 0.00 0.00 4.00
3052 3254 7.309316 GCCCAGATTAGAACTACACTAGTATCC 60.309 44.444 0.00 0.00 38.26 2.59
3053 3255 7.230913 TGCCCAGATTAGAACTACACTAGTATC 59.769 40.741 0.00 0.00 38.26 2.24
3054 3256 7.014422 GTGCCCAGATTAGAACTACACTAGTAT 59.986 40.741 0.00 0.00 38.26 2.12
3092 3298 9.261180 CTTTTATTAGAGACTAATCCGCATCAA 57.739 33.333 7.20 0.00 0.00 2.57
3093 3299 8.421784 ACTTTTATTAGAGACTAATCCGCATCA 58.578 33.333 7.20 0.00 0.00 3.07
3094 3300 8.704234 CACTTTTATTAGAGACTAATCCGCATC 58.296 37.037 7.20 0.00 0.00 3.91
3095 3301 8.204836 ACACTTTTATTAGAGACTAATCCGCAT 58.795 33.333 7.20 0.00 0.00 4.73
3103 3321 9.944376 AAGCATTCACACTTTTATTAGAGACTA 57.056 29.630 0.00 0.00 0.00 2.59
3121 3372 5.718146 TGTTCAGAAAACACAAAGCATTCA 58.282 33.333 0.00 0.00 0.00 2.57
3165 3417 6.405538 TGTTCAGTTTTGCTTCAAAAGGAAT 58.594 32.000 15.63 0.75 42.77 3.01
3168 3420 6.402442 CCTTTGTTCAGTTTTGCTTCAAAAGG 60.402 38.462 5.11 0.00 42.77 3.11
3169 3421 6.147656 ACCTTTGTTCAGTTTTGCTTCAAAAG 59.852 34.615 5.11 0.00 42.77 2.27
3174 3426 4.743493 TCACCTTTGTTCAGTTTTGCTTC 58.257 39.130 0.00 0.00 0.00 3.86
3191 3443 1.262640 AACGGCCCTACGAATCACCT 61.263 55.000 0.00 0.00 37.61 4.00
3214 3466 6.791887 ACGCATAGGATGAATCATTACAAG 57.208 37.500 0.00 0.00 0.00 3.16
3216 3468 5.405269 CGAACGCATAGGATGAATCATTACA 59.595 40.000 0.00 0.00 0.00 2.41
3217 3469 5.163953 CCGAACGCATAGGATGAATCATTAC 60.164 44.000 0.00 0.00 0.00 1.89
3218 3470 4.929211 CCGAACGCATAGGATGAATCATTA 59.071 41.667 0.00 0.00 0.00 1.90
3219 3471 3.748048 CCGAACGCATAGGATGAATCATT 59.252 43.478 0.00 0.00 0.00 2.57
3220 3472 3.244215 ACCGAACGCATAGGATGAATCAT 60.244 43.478 0.00 0.00 0.00 2.45
3221 3473 2.102420 ACCGAACGCATAGGATGAATCA 59.898 45.455 0.00 0.00 0.00 2.57
3222 3474 2.755650 ACCGAACGCATAGGATGAATC 58.244 47.619 0.00 0.00 0.00 2.52
3223 3475 2.910688 ACCGAACGCATAGGATGAAT 57.089 45.000 0.00 0.00 0.00 2.57
3224 3476 2.684001 AACCGAACGCATAGGATGAA 57.316 45.000 0.00 0.00 0.00 2.57
3225 3477 2.684001 AAACCGAACGCATAGGATGA 57.316 45.000 0.00 0.00 0.00 2.92
3226 3478 4.376008 CGAATAAACCGAACGCATAGGATG 60.376 45.833 0.00 0.00 0.00 3.51
3227 3479 3.739300 CGAATAAACCGAACGCATAGGAT 59.261 43.478 0.00 0.00 0.00 3.24
3228 3480 3.117794 CGAATAAACCGAACGCATAGGA 58.882 45.455 0.00 0.00 0.00 2.94
3229 3481 2.220133 CCGAATAAACCGAACGCATAGG 59.780 50.000 0.00 0.00 0.00 2.57
3230 3482 2.861935 ACCGAATAAACCGAACGCATAG 59.138 45.455 0.00 0.00 0.00 2.23
3231 3483 2.891112 ACCGAATAAACCGAACGCATA 58.109 42.857 0.00 0.00 0.00 3.14
3232 3484 1.729284 ACCGAATAAACCGAACGCAT 58.271 45.000 0.00 0.00 0.00 4.73
3233 3485 1.510776 AACCGAATAAACCGAACGCA 58.489 45.000 0.00 0.00 0.00 5.24
3234 3486 2.599739 AAACCGAATAAACCGAACGC 57.400 45.000 0.00 0.00 0.00 4.84
3235 3487 4.644044 TGTAAACCGAATAAACCGAACG 57.356 40.909 0.00 0.00 0.00 3.95
3236 3488 5.106594 ACCATGTAAACCGAATAAACCGAAC 60.107 40.000 0.00 0.00 0.00 3.95
3237 3489 5.002516 ACCATGTAAACCGAATAAACCGAA 58.997 37.500 0.00 0.00 0.00 4.30
3238 3490 4.577875 ACCATGTAAACCGAATAAACCGA 58.422 39.130 0.00 0.00 0.00 4.69
3239 3491 4.950434 ACCATGTAAACCGAATAAACCG 57.050 40.909 0.00 0.00 0.00 4.44
3240 3492 6.679843 TCAAACCATGTAAACCGAATAAACC 58.320 36.000 0.00 0.00 0.00 3.27
3241 3493 8.751302 AATCAAACCATGTAAACCGAATAAAC 57.249 30.769 0.00 0.00 0.00 2.01
3246 3498 8.176365 CGTATAAATCAAACCATGTAAACCGAA 58.824 33.333 0.00 0.00 0.00 4.30
3247 3499 7.201626 CCGTATAAATCAAACCATGTAAACCGA 60.202 37.037 0.00 0.00 0.00 4.69
3248 3500 6.908284 CCGTATAAATCAAACCATGTAAACCG 59.092 38.462 0.00 0.00 0.00 4.44
3249 3501 7.764331 ACCGTATAAATCAAACCATGTAAACC 58.236 34.615 0.00 0.00 0.00 3.27
3250 3502 9.628746 AAACCGTATAAATCAAACCATGTAAAC 57.371 29.630 0.00 0.00 0.00 2.01
3253 3505 9.843334 GAAAAACCGTATAAATCAAACCATGTA 57.157 29.630 0.00 0.00 0.00 2.29
3254 3506 8.361139 TGAAAAACCGTATAAATCAAACCATGT 58.639 29.630 0.00 0.00 0.00 3.21
3255 3507 8.749841 TGAAAAACCGTATAAATCAAACCATG 57.250 30.769 0.00 0.00 0.00 3.66
3256 3508 8.581578 ACTGAAAAACCGTATAAATCAAACCAT 58.418 29.630 0.00 0.00 0.00 3.55
3257 3509 7.942990 ACTGAAAAACCGTATAAATCAAACCA 58.057 30.769 0.00 0.00 0.00 3.67
3258 3510 8.806177 AACTGAAAAACCGTATAAATCAAACC 57.194 30.769 0.00 0.00 0.00 3.27
3260 3512 9.804758 ACAAACTGAAAAACCGTATAAATCAAA 57.195 25.926 0.00 0.00 0.00 2.69
3264 3516 9.849166 CCATACAAACTGAAAAACCGTATAAAT 57.151 29.630 0.00 0.00 0.00 1.40
3265 3517 8.848182 ACCATACAAACTGAAAAACCGTATAAA 58.152 29.630 0.00 0.00 0.00 1.40
3266 3518 8.393671 ACCATACAAACTGAAAAACCGTATAA 57.606 30.769 0.00 0.00 0.00 0.98
3267 3519 7.982761 ACCATACAAACTGAAAAACCGTATA 57.017 32.000 0.00 0.00 0.00 1.47
3268 3520 6.887626 ACCATACAAACTGAAAAACCGTAT 57.112 33.333 0.00 0.00 0.00 3.06
3269 3521 7.982761 ATACCATACAAACTGAAAAACCGTA 57.017 32.000 0.00 0.00 0.00 4.02
3270 3522 6.887626 ATACCATACAAACTGAAAAACCGT 57.112 33.333 0.00 0.00 0.00 4.83
3271 3523 9.849166 ATTAATACCATACAAACTGAAAAACCG 57.151 29.630 0.00 0.00 0.00 4.44
3311 3563 9.171877 ACCGAACCGTATTTTAATTTTATACCA 57.828 29.630 0.00 0.00 0.00 3.25
3315 3567 9.276397 CGAAACCGAACCGTATTTTAATTTTAT 57.724 29.630 0.00 0.00 0.00 1.40
3316 3568 7.748241 CCGAAACCGAACCGTATTTTAATTTTA 59.252 33.333 0.00 0.00 0.00 1.52
3317 3569 6.581919 CCGAAACCGAACCGTATTTTAATTTT 59.418 34.615 0.00 0.00 0.00 1.82
3318 3570 6.085573 CCGAAACCGAACCGTATTTTAATTT 58.914 36.000 0.00 0.00 0.00 1.82
3319 3571 5.181056 ACCGAAACCGAACCGTATTTTAATT 59.819 36.000 0.00 0.00 0.00 1.40
3320 3572 4.694982 ACCGAAACCGAACCGTATTTTAAT 59.305 37.500 0.00 0.00 0.00 1.40
3321 3573 4.061596 ACCGAAACCGAACCGTATTTTAA 58.938 39.130 0.00 0.00 0.00 1.52
3322 3574 3.658709 ACCGAAACCGAACCGTATTTTA 58.341 40.909 0.00 0.00 0.00 1.52
3323 3575 2.493035 ACCGAAACCGAACCGTATTTT 58.507 42.857 0.00 0.00 0.00 1.82
3324 3576 2.168326 ACCGAAACCGAACCGTATTT 57.832 45.000 0.00 0.00 0.00 1.40
3325 3577 3.525268 ATACCGAAACCGAACCGTATT 57.475 42.857 0.00 0.00 0.00 1.89
3326 3578 4.853924 ATATACCGAAACCGAACCGTAT 57.146 40.909 0.00 0.00 0.00 3.06
3327 3579 4.023536 GGTATATACCGAAACCGAACCGTA 60.024 45.833 16.11 0.00 36.50 4.02
3328 3580 3.243401 GGTATATACCGAAACCGAACCGT 60.243 47.826 16.11 0.00 36.50 4.83
3329 3581 3.308530 GGTATATACCGAAACCGAACCG 58.691 50.000 16.11 0.00 36.50 4.44
3348 3600 8.966868 ACTGAAACCATATCGAAATAATTTGGT 58.033 29.630 0.00 0.00 39.29 3.67
3376 3628 9.729023 CGCATCAACTTTGATTTTTATGGTATA 57.271 29.630 1.52 0.00 45.13 1.47
3377 3629 8.465999 TCGCATCAACTTTGATTTTTATGGTAT 58.534 29.630 1.52 0.00 45.13 2.73
3378 3630 7.821652 TCGCATCAACTTTGATTTTTATGGTA 58.178 30.769 1.52 0.00 45.13 3.25
3379 3631 6.686630 TCGCATCAACTTTGATTTTTATGGT 58.313 32.000 1.52 0.00 45.13 3.55
3380 3632 7.579589 TTCGCATCAACTTTGATTTTTATGG 57.420 32.000 1.52 0.00 45.13 2.74
3383 3635 9.254133 TCAATTTCGCATCAACTTTGATTTTTA 57.746 25.926 1.52 0.00 45.13 1.52
3384 3636 8.140677 TCAATTTCGCATCAACTTTGATTTTT 57.859 26.923 1.52 0.00 45.13 1.94
3385 3637 7.712264 TCAATTTCGCATCAACTTTGATTTT 57.288 28.000 1.52 0.00 45.13 1.82
3386 3638 7.712264 TTCAATTTCGCATCAACTTTGATTT 57.288 28.000 1.52 0.00 45.13 2.17
3387 3639 7.712264 TTTCAATTTCGCATCAACTTTGATT 57.288 28.000 1.52 0.00 45.13 2.57
3389 3641 7.437565 TCATTTTCAATTTCGCATCAACTTTGA 59.562 29.630 0.00 0.00 42.14 2.69
3390 3642 7.528182 GTCATTTTCAATTTCGCATCAACTTTG 59.472 33.333 0.00 0.00 0.00 2.77
3391 3643 7.439056 AGTCATTTTCAATTTCGCATCAACTTT 59.561 29.630 0.00 0.00 0.00 2.66
3392 3644 6.925165 AGTCATTTTCAATTTCGCATCAACTT 59.075 30.769 0.00 0.00 0.00 2.66
3393 3645 6.449698 AGTCATTTTCAATTTCGCATCAACT 58.550 32.000 0.00 0.00 0.00 3.16
3394 3646 6.695292 AGTCATTTTCAATTTCGCATCAAC 57.305 33.333 0.00 0.00 0.00 3.18
3395 3647 8.809159 TTAAGTCATTTTCAATTTCGCATCAA 57.191 26.923 0.00 0.00 0.00 2.57
3396 3648 8.984891 ATTAAGTCATTTTCAATTTCGCATCA 57.015 26.923 0.00 0.00 0.00 3.07
3410 3662 9.886132 AGACACGTCCTTATTATTAAGTCATTT 57.114 29.630 0.00 0.00 34.20 2.32
3413 3665 8.133627 GCTAGACACGTCCTTATTATTAAGTCA 58.866 37.037 0.00 0.00 34.20 3.41
3414 3666 7.594386 GGCTAGACACGTCCTTATTATTAAGTC 59.406 40.741 0.00 0.00 34.20 3.01
3415 3667 7.069085 TGGCTAGACACGTCCTTATTATTAAGT 59.931 37.037 0.00 0.00 34.20 2.24
3416 3668 7.431249 TGGCTAGACACGTCCTTATTATTAAG 58.569 38.462 0.00 0.00 35.55 1.85
3417 3669 7.069085 ACTGGCTAGACACGTCCTTATTATTAA 59.931 37.037 3.17 0.00 0.00 1.40
3418 3670 6.548622 ACTGGCTAGACACGTCCTTATTATTA 59.451 38.462 3.17 0.00 0.00 0.98
3419 3671 5.363005 ACTGGCTAGACACGTCCTTATTATT 59.637 40.000 3.17 0.00 0.00 1.40
3420 3672 4.894114 ACTGGCTAGACACGTCCTTATTAT 59.106 41.667 3.17 0.00 0.00 1.28
3421 3673 4.097437 CACTGGCTAGACACGTCCTTATTA 59.903 45.833 3.17 0.00 0.00 0.98
3422 3674 3.097614 ACTGGCTAGACACGTCCTTATT 58.902 45.455 3.17 0.00 0.00 1.40
3423 3675 2.427453 CACTGGCTAGACACGTCCTTAT 59.573 50.000 3.17 0.00 0.00 1.73
3424 3676 1.816835 CACTGGCTAGACACGTCCTTA 59.183 52.381 3.17 0.00 0.00 2.69
3425 3677 0.603569 CACTGGCTAGACACGTCCTT 59.396 55.000 3.17 0.00 0.00 3.36
3452 3704 1.077089 GCTCGTTAAGCGTCCCAGAC 61.077 60.000 0.00 0.00 42.21 3.51
3453 3705 1.214589 GCTCGTTAAGCGTCCCAGA 59.785 57.895 0.00 0.00 42.21 3.86
3507 3894 4.072131 ACACACGGATTGAAAGTTATGCT 58.928 39.130 0.00 0.00 0.00 3.79
3561 3948 0.249280 TTGAAGAGCACGTCGCAAGA 60.249 50.000 11.58 0.00 46.13 3.02
3564 3951 0.581529 CTTTTGAAGAGCACGTCGCA 59.418 50.000 11.58 0.00 46.13 5.10
3566 3953 3.305964 TCTACTTTTGAAGAGCACGTCG 58.694 45.455 0.00 0.00 0.00 5.12
3568 3955 4.246458 GGATCTACTTTTGAAGAGCACGT 58.754 43.478 0.00 0.00 0.00 4.49
3629 4016 9.225436 TCTAGTTGCACACATATTGATGTTTAA 57.775 29.630 0.00 0.00 44.18 1.52
3636 4023 6.930731 TGTAGTCTAGTTGCACACATATTGA 58.069 36.000 0.00 0.00 0.00 2.57
3642 4029 3.006859 AGCATGTAGTCTAGTTGCACACA 59.993 43.478 13.68 0.00 35.79 3.72
3664 4051 2.817834 GTATGCTCGGTTGGCGCA 60.818 61.111 10.83 0.00 38.14 6.09
3671 4058 0.388134 GACACACACGTATGCTCGGT 60.388 55.000 0.00 0.00 34.94 4.69
3673 4060 1.414378 TTGACACACACGTATGCTCG 58.586 50.000 0.00 0.00 0.00 5.03
3689 4076 6.995686 TGTTTAGTTGGCAGAAAGACTATTGA 59.004 34.615 0.00 0.00 0.00 2.57
3698 4085 6.183360 ACACATTGATGTTTAGTTGGCAGAAA 60.183 34.615 0.00 0.00 39.39 2.52
3704 4091 4.681025 GCACACACATTGATGTTTAGTTGG 59.319 41.667 0.00 0.00 39.39 3.77
3738 4125 1.631072 CTCAGTTGGCGCGATAACG 59.369 57.895 12.10 10.29 42.93 3.18
3742 4129 0.250038 ATATGCTCAGTTGGCGCGAT 60.250 50.000 12.10 0.00 0.00 4.58
3743 4130 1.143838 ATATGCTCAGTTGGCGCGA 59.856 52.632 12.10 0.00 0.00 5.87
3767 4154 0.692476 AGTTGGCATGACTACTGGCA 59.308 50.000 15.25 0.00 46.12 4.92
3768 4155 2.691409 TAGTTGGCATGACTACTGGC 57.309 50.000 23.78 0.00 39.47 4.85
3769 4156 4.323417 TGTTTAGTTGGCATGACTACTGG 58.677 43.478 23.78 0.00 29.78 4.00
3770 4157 5.643348 TGATGTTTAGTTGGCATGACTACTG 59.357 40.000 23.78 0.00 29.78 2.74
3771 4158 5.804639 TGATGTTTAGTTGGCATGACTACT 58.195 37.500 19.66 19.66 29.78 2.57
3772 4159 6.494893 TTGATGTTTAGTTGGCATGACTAC 57.505 37.500 4.82 4.82 29.78 2.73
3773 4160 6.658816 ACATTGATGTTTAGTTGGCATGACTA 59.341 34.615 0.00 0.00 37.90 2.59
3774 4161 5.477984 ACATTGATGTTTAGTTGGCATGACT 59.522 36.000 0.00 0.00 37.90 3.41
3775 4162 5.574055 CACATTGATGTTTAGTTGGCATGAC 59.426 40.000 0.00 0.00 39.39 3.06
3776 4163 5.243507 ACACATTGATGTTTAGTTGGCATGA 59.756 36.000 0.00 0.00 39.39 3.07
3777 4164 5.346551 CACACATTGATGTTTAGTTGGCATG 59.653 40.000 0.00 0.00 39.39 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.