Multiple sequence alignment - TraesCS1A01G089700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G089700 chr1A 100.000 2954 0 0 1 2954 79109515 79112468 0.000000e+00 5456.0
1 TraesCS1A01G089700 chr1A 92.878 1039 60 8 907 1935 78551253 78550219 0.000000e+00 1496.0
2 TraesCS1A01G089700 chr1A 94.393 428 24 0 1508 1935 78958399 78957972 0.000000e+00 658.0
3 TraesCS1A01G089700 chr1A 92.775 346 14 7 909 1243 78959391 78959046 9.510000e-135 490.0
4 TraesCS1A01G089700 chr1A 89.753 283 25 4 1236 1515 78958718 78958437 2.800000e-95 359.0
5 TraesCS1A01G089700 chr1A 91.964 112 5 1 595 702 78556918 78556807 1.420000e-33 154.0
6 TraesCS1A01G089700 chr1D 91.810 1392 65 18 595 1940 84616020 84614632 0.000000e+00 1893.0
7 TraesCS1A01G089700 chr1D 90.209 1246 86 14 720 1935 84891381 84892620 0.000000e+00 1592.0
8 TraesCS1A01G089700 chr1D 92.837 1047 61 8 906 1940 84728623 84727579 0.000000e+00 1506.0
9 TraesCS1A01G089700 chr1D 95.918 147 5 1 1 146 84616154 84616008 1.370000e-58 237.0
10 TraesCS1A01G089700 chr1D 91.837 147 10 2 1 146 84890284 84890429 1.390000e-48 204.0
11 TraesCS1A01G089700 chr1D 91.818 110 4 2 592 697 84730025 84729917 6.600000e-32 148.0
12 TraesCS1A01G089700 chr1D 85.034 147 17 3 1 146 84730153 84730011 8.530000e-31 145.0
13 TraesCS1A01G089700 chr1D 89.216 102 6 3 595 691 84890417 84890518 4.000000e-24 122.0
14 TraesCS1A01G089700 chr1D 94.915 59 3 0 814 872 84728761 84728703 3.130000e-15 93.5
15 TraesCS1A01G089700 chr5A 98.818 1015 12 0 1940 2954 632442106 632441092 0.000000e+00 1808.0
16 TraesCS1A01G089700 chr5A 96.752 1016 33 0 1939 2954 653679500 653680515 0.000000e+00 1694.0
17 TraesCS1A01G089700 chr7A 98.720 1016 13 0 1939 2954 735991905 735990890 0.000000e+00 1805.0
18 TraesCS1A01G089700 chr3D 97.933 1016 19 2 1940 2954 566137563 566136549 0.000000e+00 1759.0
19 TraesCS1A01G089700 chr3D 88.281 128 13 1 317 442 56430935 56431062 5.100000e-33 152.0
20 TraesCS1A01G089700 chr5D 97.734 1015 23 0 1940 2954 321688019 321689033 0.000000e+00 1748.0
21 TraesCS1A01G089700 chr5D 97.638 1016 24 0 1939 2954 408223763 408224778 0.000000e+00 1744.0
22 TraesCS1A01G089700 chr5D 90.909 165 15 0 431 595 379217052 379216888 3.830000e-54 222.0
23 TraesCS1A01G089700 chr1B 89.722 1401 74 24 595 1935 137613053 137614443 0.000000e+00 1725.0
24 TraesCS1A01G089700 chr1B 97.831 968 21 0 1940 2907 22951741 22952708 0.000000e+00 1672.0
25 TraesCS1A01G089700 chr1B 92.617 1070 59 8 885 1935 137450816 137449748 0.000000e+00 1520.0
26 TraesCS1A01G089700 chr1B 93.042 1006 61 6 938 1935 137182252 137181248 0.000000e+00 1461.0
27 TraesCS1A01G089700 chr1B 91.946 149 10 2 1 147 137612918 137613066 1.070000e-49 207.0
28 TraesCS1A01G089700 chr3B 97.343 1016 24 1 1939 2954 585028335 585027323 0.000000e+00 1724.0
29 TraesCS1A01G089700 chr4B 90.575 1008 85 3 1951 2954 473587980 473588981 0.000000e+00 1327.0
30 TraesCS1A01G089700 chr2A 84.908 762 94 11 938 1698 611763840 611764581 0.000000e+00 750.0
31 TraesCS1A01G089700 chr2A 83.051 295 22 10 322 591 594579473 594579182 2.940000e-60 243.0
32 TraesCS1A01G089700 chr2A 81.613 310 37 17 145 438 768258884 768258579 3.810000e-59 239.0
33 TraesCS1A01G089700 chr2D 85.905 525 71 2 1412 1936 470200971 470201492 9.250000e-155 556.0
34 TraesCS1A01G089700 chr2D 81.102 127 16 6 325 445 539228149 539228025 8.720000e-16 95.3
35 TraesCS1A01G089700 chr2B 83.162 487 41 20 145 595 73808618 73808137 9.860000e-110 407.0
36 TraesCS1A01G089700 chr2B 81.950 482 53 11 145 592 73802081 73802562 7.730000e-101 377.0
37 TraesCS1A01G089700 chr4A 86.032 315 35 8 282 592 627293470 627293779 2.190000e-86 329.0
38 TraesCS1A01G089700 chr4D 87.681 276 30 4 318 592 418493778 418494050 4.750000e-83 318.0
39 TraesCS1A01G089700 chrUn 90.476 168 16 0 428 595 381001498 381001331 3.830000e-54 222.0
40 TraesCS1A01G089700 chrUn 89.881 168 17 0 428 595 17017962 17017795 1.780000e-52 217.0
41 TraesCS1A01G089700 chrUn 90.184 163 16 0 430 592 277779351 277779513 2.310000e-51 213.0
42 TraesCS1A01G089700 chr7D 89.349 169 16 2 428 595 93779030 93778863 8.300000e-51 211.0
43 TraesCS1A01G089700 chr5B 88.485 165 19 0 428 592 565495026 565494862 1.800000e-47 200.0
44 TraesCS1A01G089700 chr6A 91.228 57 4 1 397 453 162359451 162359396 3.160000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G089700 chr1A 79109515 79112468 2953 False 5456.000000 5456 100.000000 1 2954 1 chr1A.!!$F1 2953
1 TraesCS1A01G089700 chr1A 78550219 78551253 1034 True 1496.000000 1496 92.878000 907 1935 1 chr1A.!!$R1 1028
2 TraesCS1A01G089700 chr1A 78957972 78959391 1419 True 502.333333 658 92.307000 909 1935 3 chr1A.!!$R3 1026
3 TraesCS1A01G089700 chr1D 84614632 84616154 1522 True 1065.000000 1893 93.864000 1 1940 2 chr1D.!!$R1 1939
4 TraesCS1A01G089700 chr1D 84890284 84892620 2336 False 639.333333 1592 90.420667 1 1935 3 chr1D.!!$F1 1934
5 TraesCS1A01G089700 chr1D 84727579 84730153 2574 True 473.125000 1506 91.151000 1 1940 4 chr1D.!!$R2 1939
6 TraesCS1A01G089700 chr5A 632441092 632442106 1014 True 1808.000000 1808 98.818000 1940 2954 1 chr5A.!!$R1 1014
7 TraesCS1A01G089700 chr5A 653679500 653680515 1015 False 1694.000000 1694 96.752000 1939 2954 1 chr5A.!!$F1 1015
8 TraesCS1A01G089700 chr7A 735990890 735991905 1015 True 1805.000000 1805 98.720000 1939 2954 1 chr7A.!!$R1 1015
9 TraesCS1A01G089700 chr3D 566136549 566137563 1014 True 1759.000000 1759 97.933000 1940 2954 1 chr3D.!!$R1 1014
10 TraesCS1A01G089700 chr5D 321688019 321689033 1014 False 1748.000000 1748 97.734000 1940 2954 1 chr5D.!!$F1 1014
11 TraesCS1A01G089700 chr5D 408223763 408224778 1015 False 1744.000000 1744 97.638000 1939 2954 1 chr5D.!!$F2 1015
12 TraesCS1A01G089700 chr1B 22951741 22952708 967 False 1672.000000 1672 97.831000 1940 2907 1 chr1B.!!$F1 967
13 TraesCS1A01G089700 chr1B 137449748 137450816 1068 True 1520.000000 1520 92.617000 885 1935 1 chr1B.!!$R2 1050
14 TraesCS1A01G089700 chr1B 137181248 137182252 1004 True 1461.000000 1461 93.042000 938 1935 1 chr1B.!!$R1 997
15 TraesCS1A01G089700 chr1B 137612918 137614443 1525 False 966.000000 1725 90.834000 1 1935 2 chr1B.!!$F2 1934
16 TraesCS1A01G089700 chr3B 585027323 585028335 1012 True 1724.000000 1724 97.343000 1939 2954 1 chr3B.!!$R1 1015
17 TraesCS1A01G089700 chr4B 473587980 473588981 1001 False 1327.000000 1327 90.575000 1951 2954 1 chr4B.!!$F1 1003
18 TraesCS1A01G089700 chr2A 611763840 611764581 741 False 750.000000 750 84.908000 938 1698 1 chr2A.!!$F1 760
19 TraesCS1A01G089700 chr2D 470200971 470201492 521 False 556.000000 556 85.905000 1412 1936 1 chr2D.!!$F1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
882 2304 0.03582 CCAAAACGGCCTGCCTAGTA 60.036 55.0 6.6 0.0 0.0 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2164 4059 2.092323 TCGATCCAGTCTTCACATCGT 58.908 47.619 0.0 0.0 38.02 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 152 9.323985 CAAAATTTGGTTGTCTAAAATGAGGAA 57.676 29.630 0.00 0.00 0.00 3.36
148 153 9.546428 AAAATTTGGTTGTCTAAAATGAGGAAG 57.454 29.630 0.00 0.00 0.00 3.46
149 154 6.648879 TTTGGTTGTCTAAAATGAGGAAGG 57.351 37.500 0.00 0.00 0.00 3.46
150 155 4.662278 TGGTTGTCTAAAATGAGGAAGGG 58.338 43.478 0.00 0.00 0.00 3.95
151 156 3.444034 GGTTGTCTAAAATGAGGAAGGGC 59.556 47.826 0.00 0.00 0.00 5.19
152 157 4.336280 GTTGTCTAAAATGAGGAAGGGCT 58.664 43.478 0.00 0.00 0.00 5.19
153 158 5.497474 GTTGTCTAAAATGAGGAAGGGCTA 58.503 41.667 0.00 0.00 0.00 3.93
154 159 5.099042 TGTCTAAAATGAGGAAGGGCTAC 57.901 43.478 0.00 0.00 0.00 3.58
155 160 4.534500 TGTCTAAAATGAGGAAGGGCTACA 59.466 41.667 0.00 0.00 0.00 2.74
156 161 5.013704 TGTCTAAAATGAGGAAGGGCTACAA 59.986 40.000 0.00 0.00 0.00 2.41
157 162 5.586643 GTCTAAAATGAGGAAGGGCTACAAG 59.413 44.000 0.00 0.00 0.00 3.16
158 163 3.372440 AAATGAGGAAGGGCTACAAGG 57.628 47.619 0.00 0.00 0.00 3.61
159 164 0.548510 ATGAGGAAGGGCTACAAGGC 59.451 55.000 0.00 0.00 40.51 4.35
160 165 0.840288 TGAGGAAGGGCTACAAGGCA 60.840 55.000 2.75 0.00 43.44 4.75
161 166 0.107459 GAGGAAGGGCTACAAGGCAG 60.107 60.000 2.75 0.00 43.44 4.85
162 167 0.842467 AGGAAGGGCTACAAGGCAGT 60.842 55.000 2.75 0.00 43.44 4.40
163 168 0.393132 GGAAGGGCTACAAGGCAGTC 60.393 60.000 2.75 0.00 43.44 3.51
164 169 0.741221 GAAGGGCTACAAGGCAGTCG 60.741 60.000 2.75 0.00 43.44 4.18
165 170 1.192146 AAGGGCTACAAGGCAGTCGA 61.192 55.000 2.75 0.00 43.44 4.20
166 171 1.448013 GGGCTACAAGGCAGTCGAC 60.448 63.158 7.70 7.70 43.44 4.20
167 172 1.592223 GGCTACAAGGCAGTCGACT 59.408 57.895 13.58 13.58 40.97 4.18
168 173 0.737715 GGCTACAAGGCAGTCGACTG 60.738 60.000 35.80 35.80 46.40 3.51
169 174 0.243907 GCTACAAGGCAGTCGACTGA 59.756 55.000 42.03 22.90 46.59 3.41
170 175 1.336887 GCTACAAGGCAGTCGACTGAA 60.337 52.381 42.03 20.74 46.59 3.02
171 176 2.866460 GCTACAAGGCAGTCGACTGAAA 60.866 50.000 42.03 21.04 46.59 2.69
172 177 2.550830 ACAAGGCAGTCGACTGAAAT 57.449 45.000 42.03 25.99 46.59 2.17
173 178 2.851195 ACAAGGCAGTCGACTGAAATT 58.149 42.857 42.03 29.33 46.59 1.82
174 179 3.214328 ACAAGGCAGTCGACTGAAATTT 58.786 40.909 42.03 26.76 46.59 1.82
175 180 3.251004 ACAAGGCAGTCGACTGAAATTTC 59.749 43.478 42.03 25.41 46.59 2.17
176 181 3.126001 AGGCAGTCGACTGAAATTTCA 57.874 42.857 42.03 19.45 46.59 2.69
177 182 3.679389 AGGCAGTCGACTGAAATTTCAT 58.321 40.909 42.03 21.99 46.59 2.57
178 183 4.074970 AGGCAGTCGACTGAAATTTCATT 58.925 39.130 42.03 15.60 46.59 2.57
179 184 4.520492 AGGCAGTCGACTGAAATTTCATTT 59.480 37.500 42.03 15.20 46.59 2.32
180 185 4.618489 GGCAGTCGACTGAAATTTCATTTG 59.382 41.667 42.03 18.16 46.59 2.32
181 186 4.618489 GCAGTCGACTGAAATTTCATTTGG 59.382 41.667 42.03 16.24 46.59 3.28
182 187 5.562696 GCAGTCGACTGAAATTTCATTTGGA 60.563 40.000 42.03 14.09 46.59 3.53
183 188 6.615088 CAGTCGACTGAAATTTCATTTGGAT 58.385 36.000 36.73 8.97 46.59 3.41
184 189 7.086376 CAGTCGACTGAAATTTCATTTGGATT 58.914 34.615 36.73 11.39 46.59 3.01
185 190 8.236586 CAGTCGACTGAAATTTCATTTGGATTA 58.763 33.333 36.73 1.72 46.59 1.75
186 191 8.454106 AGTCGACTGAAATTTCATTTGGATTAG 58.546 33.333 19.30 8.73 36.46 1.73
187 192 8.237267 GTCGACTGAAATTTCATTTGGATTAGT 58.763 33.333 20.76 11.73 36.46 2.24
188 193 8.450964 TCGACTGAAATTTCATTTGGATTAGTC 58.549 33.333 20.76 17.79 36.46 2.59
189 194 8.236586 CGACTGAAATTTCATTTGGATTAGTCA 58.763 33.333 20.76 0.00 36.46 3.41
190 195 9.912634 GACTGAAATTTCATTTGGATTAGTCAA 57.087 29.630 20.76 0.00 36.46 3.18
199 204 9.642327 TTCATTTGGATTAGTCAAATCAACATG 57.358 29.630 0.00 0.00 45.05 3.21
200 205 9.022884 TCATTTGGATTAGTCAAATCAACATGA 57.977 29.630 0.00 1.56 45.05 3.07
201 206 9.642327 CATTTGGATTAGTCAAATCAACATGAA 57.358 29.630 0.00 0.00 45.05 2.57
203 208 9.474920 TTTGGATTAGTCAAATCAACATGAAAC 57.525 29.630 0.00 0.00 45.05 2.78
204 209 7.304735 TGGATTAGTCAAATCAACATGAAACG 58.695 34.615 0.00 0.00 45.05 3.60
205 210 7.040755 TGGATTAGTCAAATCAACATGAAACGT 60.041 33.333 0.00 0.00 45.05 3.99
206 211 7.807907 GGATTAGTCAAATCAACATGAAACGTT 59.192 33.333 0.00 0.00 45.05 3.99
207 212 9.820229 GATTAGTCAAATCAACATGAAACGTTA 57.180 29.630 0.00 0.00 43.10 3.18
208 213 9.825972 ATTAGTCAAATCAACATGAAACGTTAG 57.174 29.630 0.00 0.00 0.00 2.34
209 214 7.490962 AGTCAAATCAACATGAAACGTTAGA 57.509 32.000 0.00 0.00 0.00 2.10
210 215 8.099364 AGTCAAATCAACATGAAACGTTAGAT 57.901 30.769 0.00 0.00 0.00 1.98
211 216 9.214957 AGTCAAATCAACATGAAACGTTAGATA 57.785 29.630 0.00 0.00 0.00 1.98
212 217 9.820229 GTCAAATCAACATGAAACGTTAGATAA 57.180 29.630 0.00 0.00 0.00 1.75
233 238 4.759516 AAAAACGAACGCACCAGATTAT 57.240 36.364 0.00 0.00 0.00 1.28
234 239 4.336532 AAAACGAACGCACCAGATTATC 57.663 40.909 0.00 0.00 0.00 1.75
235 240 2.961526 ACGAACGCACCAGATTATCT 57.038 45.000 0.00 0.00 0.00 1.98
236 241 2.810650 ACGAACGCACCAGATTATCTC 58.189 47.619 0.00 0.00 0.00 2.75
237 242 2.427453 ACGAACGCACCAGATTATCTCT 59.573 45.455 0.00 0.00 33.14 3.10
238 243 3.119101 ACGAACGCACCAGATTATCTCTT 60.119 43.478 0.00 0.00 29.16 2.85
239 244 3.487574 CGAACGCACCAGATTATCTCTTC 59.512 47.826 0.00 0.00 29.16 2.87
240 245 4.688021 GAACGCACCAGATTATCTCTTCT 58.312 43.478 0.00 0.00 29.16 2.85
241 246 5.505819 CGAACGCACCAGATTATCTCTTCTA 60.506 44.000 0.00 0.00 29.16 2.10
242 247 5.189659 ACGCACCAGATTATCTCTTCTAC 57.810 43.478 0.00 0.00 29.16 2.59
243 248 4.038162 ACGCACCAGATTATCTCTTCTACC 59.962 45.833 0.00 0.00 29.16 3.18
244 249 4.279671 CGCACCAGATTATCTCTTCTACCT 59.720 45.833 0.00 0.00 29.16 3.08
245 250 5.563867 CGCACCAGATTATCTCTTCTACCTC 60.564 48.000 0.00 0.00 29.16 3.85
246 251 5.563867 GCACCAGATTATCTCTTCTACCTCG 60.564 48.000 0.00 0.00 29.16 4.63
247 252 5.765677 CACCAGATTATCTCTTCTACCTCGA 59.234 44.000 0.00 0.00 29.16 4.04
248 253 6.263392 CACCAGATTATCTCTTCTACCTCGAA 59.737 42.308 0.00 0.00 29.16 3.71
249 254 7.007723 ACCAGATTATCTCTTCTACCTCGAAT 58.992 38.462 0.00 0.00 29.16 3.34
250 255 7.175990 ACCAGATTATCTCTTCTACCTCGAATC 59.824 40.741 0.00 0.00 29.16 2.52
251 256 7.240674 CAGATTATCTCTTCTACCTCGAATCG 58.759 42.308 0.00 0.00 29.16 3.34
252 257 6.938030 AGATTATCTCTTCTACCTCGAATCGT 59.062 38.462 1.52 0.00 0.00 3.73
253 258 6.939132 TTATCTCTTCTACCTCGAATCGTT 57.061 37.500 1.52 0.00 0.00 3.85
254 259 5.838531 ATCTCTTCTACCTCGAATCGTTT 57.161 39.130 1.52 0.00 0.00 3.60
255 260 5.232610 TCTCTTCTACCTCGAATCGTTTC 57.767 43.478 1.52 0.00 0.00 2.78
256 261 4.942483 TCTCTTCTACCTCGAATCGTTTCT 59.058 41.667 1.52 0.00 0.00 2.52
257 262 5.415077 TCTCTTCTACCTCGAATCGTTTCTT 59.585 40.000 1.52 0.00 0.00 2.52
258 263 5.638783 TCTTCTACCTCGAATCGTTTCTTC 58.361 41.667 1.52 0.00 0.00 2.87
259 264 4.367386 TCTACCTCGAATCGTTTCTTCC 57.633 45.455 1.52 0.00 0.00 3.46
260 265 4.015084 TCTACCTCGAATCGTTTCTTCCT 58.985 43.478 1.52 0.00 0.00 3.36
261 266 2.960819 ACCTCGAATCGTTTCTTCCTG 58.039 47.619 1.52 0.00 0.00 3.86
262 267 2.561419 ACCTCGAATCGTTTCTTCCTGA 59.439 45.455 1.52 0.00 0.00 3.86
263 268 3.006537 ACCTCGAATCGTTTCTTCCTGAA 59.993 43.478 1.52 0.00 0.00 3.02
264 269 3.994392 CCTCGAATCGTTTCTTCCTGAAA 59.006 43.478 1.52 0.00 41.85 2.69
265 270 4.451096 CCTCGAATCGTTTCTTCCTGAAAA 59.549 41.667 1.52 0.00 45.10 2.29
266 271 5.338614 TCGAATCGTTTCTTCCTGAAAAC 57.661 39.130 1.52 0.00 45.10 2.43
267 272 4.812091 TCGAATCGTTTCTTCCTGAAAACA 59.188 37.500 1.52 0.00 45.10 2.83
268 273 5.468746 TCGAATCGTTTCTTCCTGAAAACAT 59.531 36.000 1.52 0.00 45.10 2.71
269 274 6.647481 TCGAATCGTTTCTTCCTGAAAACATA 59.353 34.615 1.52 0.00 45.10 2.29
270 275 7.333423 TCGAATCGTTTCTTCCTGAAAACATAT 59.667 33.333 1.52 0.00 45.10 1.78
271 276 7.636359 CGAATCGTTTCTTCCTGAAAACATATC 59.364 37.037 4.80 0.00 45.10 1.63
272 277 6.403333 TCGTTTCTTCCTGAAAACATATCG 57.597 37.500 0.00 0.00 45.10 2.92
273 278 5.929992 TCGTTTCTTCCTGAAAACATATCGT 59.070 36.000 0.00 0.00 45.10 3.73
274 279 6.090358 TCGTTTCTTCCTGAAAACATATCGTC 59.910 38.462 0.00 0.00 45.10 4.20
275 280 6.090898 CGTTTCTTCCTGAAAACATATCGTCT 59.909 38.462 0.00 0.00 45.10 4.18
276 281 7.360101 CGTTTCTTCCTGAAAACATATCGTCTT 60.360 37.037 0.00 0.00 45.10 3.01
277 282 7.596749 TTCTTCCTGAAAACATATCGTCTTC 57.403 36.000 0.00 0.00 0.00 2.87
278 283 6.106673 TCTTCCTGAAAACATATCGTCTTCC 58.893 40.000 0.00 0.00 0.00 3.46
279 284 4.766375 TCCTGAAAACATATCGTCTTCCC 58.234 43.478 0.00 0.00 0.00 3.97
280 285 3.877508 CCTGAAAACATATCGTCTTCCCC 59.122 47.826 0.00 0.00 0.00 4.81
281 286 3.527533 TGAAAACATATCGTCTTCCCCG 58.472 45.455 0.00 0.00 0.00 5.73
282 287 1.949465 AAACATATCGTCTTCCCCGC 58.051 50.000 0.00 0.00 0.00 6.13
283 288 0.106149 AACATATCGTCTTCCCCGCC 59.894 55.000 0.00 0.00 0.00 6.13
284 289 1.372997 CATATCGTCTTCCCCGCCG 60.373 63.158 0.00 0.00 0.00 6.46
285 290 3.222354 ATATCGTCTTCCCCGCCGC 62.222 63.158 0.00 0.00 0.00 6.53
349 354 4.029809 CACCCTCCCCGGAACCAC 62.030 72.222 0.73 0.00 33.16 4.16
357 362 4.029809 CCGGAACCACCCCACCTC 62.030 72.222 0.00 0.00 34.64 3.85
358 363 4.029809 CGGAACCACCCCACCTCC 62.030 72.222 0.00 0.00 34.64 4.30
359 364 2.856988 GGAACCACCCCACCTCCA 60.857 66.667 0.00 0.00 0.00 3.86
360 365 2.757077 GAACCACCCCACCTCCAG 59.243 66.667 0.00 0.00 0.00 3.86
361 366 2.038762 AACCACCCCACCTCCAGT 60.039 61.111 0.00 0.00 0.00 4.00
362 367 2.125766 GAACCACCCCACCTCCAGTC 62.126 65.000 0.00 0.00 0.00 3.51
363 368 2.203998 CCACCCCACCTCCAGTCT 60.204 66.667 0.00 0.00 0.00 3.24
364 369 2.294078 CCACCCCACCTCCAGTCTC 61.294 68.421 0.00 0.00 0.00 3.36
365 370 2.122954 ACCCCACCTCCAGTCTCC 59.877 66.667 0.00 0.00 0.00 3.71
366 371 2.689034 CCCCACCTCCAGTCTCCC 60.689 72.222 0.00 0.00 0.00 4.30
367 372 2.122729 CCCACCTCCAGTCTCCCA 59.877 66.667 0.00 0.00 0.00 4.37
368 373 2.294078 CCCACCTCCAGTCTCCCAC 61.294 68.421 0.00 0.00 0.00 4.61
369 374 2.294078 CCACCTCCAGTCTCCCACC 61.294 68.421 0.00 0.00 0.00 4.61
370 375 2.283966 ACCTCCAGTCTCCCACCG 60.284 66.667 0.00 0.00 0.00 4.94
371 376 3.775654 CCTCCAGTCTCCCACCGC 61.776 72.222 0.00 0.00 0.00 5.68
372 377 3.775654 CTCCAGTCTCCCACCGCC 61.776 72.222 0.00 0.00 0.00 6.13
388 393 2.925170 CCCCGGCCATCCCTCTAG 60.925 72.222 2.24 0.00 0.00 2.43
389 394 2.925170 CCCGGCCATCCCTCTAGG 60.925 72.222 2.24 0.00 0.00 3.02
393 398 2.122189 GCCATCCCTCTAGGCCCT 60.122 66.667 0.00 0.00 42.58 5.19
394 399 2.524204 GCCATCCCTCTAGGCCCTG 61.524 68.421 0.00 0.00 42.58 4.45
395 400 2.524204 CCATCCCTCTAGGCCCTGC 61.524 68.421 0.00 0.00 34.51 4.85
406 411 4.643387 GCCCTGCCACACCGAGTT 62.643 66.667 0.00 0.00 0.00 3.01
407 412 2.113139 CCCTGCCACACCGAGTTT 59.887 61.111 0.00 0.00 0.00 2.66
408 413 1.528309 CCCTGCCACACCGAGTTTT 60.528 57.895 0.00 0.00 0.00 2.43
409 414 1.106944 CCCTGCCACACCGAGTTTTT 61.107 55.000 0.00 0.00 0.00 1.94
424 429 2.862738 TTTTTCTCCGGCGAATCCC 58.137 52.632 9.30 0.00 0.00 3.85
425 430 0.678684 TTTTTCTCCGGCGAATCCCC 60.679 55.000 9.30 0.00 0.00 4.81
426 431 1.843462 TTTTCTCCGGCGAATCCCCA 61.843 55.000 9.30 0.00 0.00 4.96
427 432 2.530958 TTTCTCCGGCGAATCCCCAC 62.531 60.000 9.30 0.00 0.00 4.61
428 433 3.781307 CTCCGGCGAATCCCCACA 61.781 66.667 9.30 0.00 0.00 4.17
429 434 4.090588 TCCGGCGAATCCCCACAC 62.091 66.667 9.30 0.00 0.00 3.82
431 436 4.402528 CGGCGAATCCCCACACCA 62.403 66.667 0.00 0.00 0.00 4.17
432 437 2.750237 GGCGAATCCCCACACCAC 60.750 66.667 0.00 0.00 0.00 4.16
433 438 2.750237 GCGAATCCCCACACCACC 60.750 66.667 0.00 0.00 0.00 4.61
434 439 2.435938 CGAATCCCCACACCACCG 60.436 66.667 0.00 0.00 0.00 4.94
435 440 2.750237 GAATCCCCACACCACCGC 60.750 66.667 0.00 0.00 0.00 5.68
436 441 4.360405 AATCCCCACACCACCGCC 62.360 66.667 0.00 0.00 0.00 6.13
452 457 2.611486 CCCCACCCCGAACCCTAA 60.611 66.667 0.00 0.00 0.00 2.69
453 458 2.676265 CCCCACCCCGAACCCTAAG 61.676 68.421 0.00 0.00 0.00 2.18
454 459 1.614226 CCCACCCCGAACCCTAAGA 60.614 63.158 0.00 0.00 0.00 2.10
455 460 0.986550 CCCACCCCGAACCCTAAGAT 60.987 60.000 0.00 0.00 0.00 2.40
456 461 1.693404 CCCACCCCGAACCCTAAGATA 60.693 57.143 0.00 0.00 0.00 1.98
457 462 1.692519 CCACCCCGAACCCTAAGATAG 59.307 57.143 0.00 0.00 0.00 2.08
458 463 1.070289 CACCCCGAACCCTAAGATAGC 59.930 57.143 0.00 0.00 0.00 2.97
459 464 0.685660 CCCCGAACCCTAAGATAGCC 59.314 60.000 0.00 0.00 0.00 3.93
460 465 1.420430 CCCGAACCCTAAGATAGCCA 58.580 55.000 0.00 0.00 0.00 4.75
461 466 1.070289 CCCGAACCCTAAGATAGCCAC 59.930 57.143 0.00 0.00 0.00 5.01
462 467 1.070289 CCGAACCCTAAGATAGCCACC 59.930 57.143 0.00 0.00 0.00 4.61
463 468 1.269621 CGAACCCTAAGATAGCCACCG 60.270 57.143 0.00 0.00 0.00 4.94
464 469 1.070289 GAACCCTAAGATAGCCACCGG 59.930 57.143 0.00 0.00 0.00 5.28
465 470 0.763223 ACCCTAAGATAGCCACCGGG 60.763 60.000 6.32 0.00 36.30 5.73
466 471 1.481056 CCCTAAGATAGCCACCGGGG 61.481 65.000 6.32 0.00 40.85 5.73
472 477 4.084147 TAGCCACCGGGGTAGCCT 62.084 66.667 11.48 0.00 44.90 4.58
481 486 3.712907 GGGTAGCCTGCCCAACGA 61.713 66.667 13.70 0.00 45.40 3.85
482 487 2.125106 GGTAGCCTGCCCAACGAG 60.125 66.667 0.00 0.00 0.00 4.18
483 488 2.820037 GTAGCCTGCCCAACGAGC 60.820 66.667 0.00 0.00 0.00 5.03
484 489 3.003173 TAGCCTGCCCAACGAGCT 61.003 61.111 0.00 0.00 37.58 4.09
485 490 2.592993 TAGCCTGCCCAACGAGCTT 61.593 57.895 0.00 0.00 35.03 3.74
486 491 2.521958 TAGCCTGCCCAACGAGCTTC 62.522 60.000 0.00 0.00 35.03 3.86
487 492 2.348998 CCTGCCCAACGAGCTTCT 59.651 61.111 0.00 0.00 0.00 2.85
488 493 1.302832 CCTGCCCAACGAGCTTCTT 60.303 57.895 0.00 0.00 0.00 2.52
489 494 1.301677 CCTGCCCAACGAGCTTCTTC 61.302 60.000 0.00 0.00 0.00 2.87
490 495 1.301677 CTGCCCAACGAGCTTCTTCC 61.302 60.000 0.00 0.00 0.00 3.46
491 496 1.003233 GCCCAACGAGCTTCTTCCT 60.003 57.895 0.00 0.00 0.00 3.36
492 497 1.021920 GCCCAACGAGCTTCTTCCTC 61.022 60.000 0.00 0.00 0.00 3.71
493 498 0.391793 CCCAACGAGCTTCTTCCTCC 60.392 60.000 0.00 0.00 0.00 4.30
494 499 0.391793 CCAACGAGCTTCTTCCTCCC 60.392 60.000 0.00 0.00 0.00 4.30
495 500 0.391793 CAACGAGCTTCTTCCTCCCC 60.392 60.000 0.00 0.00 0.00 4.81
496 501 0.545548 AACGAGCTTCTTCCTCCCCT 60.546 55.000 0.00 0.00 0.00 4.79
497 502 0.973496 ACGAGCTTCTTCCTCCCCTC 60.973 60.000 0.00 0.00 0.00 4.30
498 503 1.681486 CGAGCTTCTTCCTCCCCTCC 61.681 65.000 0.00 0.00 0.00 4.30
499 504 1.681486 GAGCTTCTTCCTCCCCTCCG 61.681 65.000 0.00 0.00 0.00 4.63
500 505 1.686110 GCTTCTTCCTCCCCTCCGA 60.686 63.158 0.00 0.00 0.00 4.55
501 506 1.051556 GCTTCTTCCTCCCCTCCGAT 61.052 60.000 0.00 0.00 0.00 4.18
502 507 0.755686 CTTCTTCCTCCCCTCCGATG 59.244 60.000 0.00 0.00 0.00 3.84
503 508 0.338467 TTCTTCCTCCCCTCCGATGA 59.662 55.000 0.00 0.00 0.00 2.92
504 509 0.105964 TCTTCCTCCCCTCCGATGAG 60.106 60.000 0.00 0.00 38.42 2.90
505 510 0.397816 CTTCCTCCCCTCCGATGAGT 60.398 60.000 0.00 0.00 36.86 3.41
506 511 0.042731 TTCCTCCCCTCCGATGAGTT 59.957 55.000 0.00 0.00 36.86 3.01
507 512 0.042731 TCCTCCCCTCCGATGAGTTT 59.957 55.000 0.00 0.00 36.86 2.66
508 513 0.466124 CCTCCCCTCCGATGAGTTTC 59.534 60.000 0.00 0.00 36.86 2.78
509 514 1.490574 CTCCCCTCCGATGAGTTTCT 58.509 55.000 0.00 0.00 36.86 2.52
510 515 1.834263 CTCCCCTCCGATGAGTTTCTT 59.166 52.381 0.00 0.00 36.86 2.52
511 516 1.831736 TCCCCTCCGATGAGTTTCTTC 59.168 52.381 0.00 0.00 36.86 2.87
512 517 1.134371 CCCCTCCGATGAGTTTCTTCC 60.134 57.143 0.00 0.00 36.86 3.46
513 518 1.834263 CCCTCCGATGAGTTTCTTCCT 59.166 52.381 0.00 0.00 36.86 3.36
514 519 2.159028 CCCTCCGATGAGTTTCTTCCTC 60.159 54.545 0.00 0.00 36.86 3.71
515 520 2.159028 CCTCCGATGAGTTTCTTCCTCC 60.159 54.545 0.00 0.00 36.86 4.30
516 521 1.831736 TCCGATGAGTTTCTTCCTCCC 59.168 52.381 0.00 0.00 0.00 4.30
517 522 1.834263 CCGATGAGTTTCTTCCTCCCT 59.166 52.381 0.00 0.00 0.00 4.20
518 523 2.237392 CCGATGAGTTTCTTCCTCCCTT 59.763 50.000 0.00 0.00 0.00 3.95
519 524 3.265791 CGATGAGTTTCTTCCTCCCTTG 58.734 50.000 0.00 0.00 0.00 3.61
520 525 3.055819 CGATGAGTTTCTTCCTCCCTTGA 60.056 47.826 0.00 0.00 0.00 3.02
521 526 4.512484 GATGAGTTTCTTCCTCCCTTGAG 58.488 47.826 0.00 0.00 38.42 3.02
532 537 3.483808 CTCCCTTGAGGCTATTTCTCC 57.516 52.381 0.00 0.00 34.80 3.71
533 538 2.105649 CTCCCTTGAGGCTATTTCTCCC 59.894 54.545 0.00 0.00 34.80 4.30
534 539 2.131023 CCCTTGAGGCTATTTCTCCCT 58.869 52.381 0.00 0.00 0.00 4.20
535 540 2.511637 CCCTTGAGGCTATTTCTCCCTT 59.488 50.000 0.00 0.00 0.00 3.95
536 541 3.053320 CCCTTGAGGCTATTTCTCCCTTT 60.053 47.826 0.00 0.00 0.00 3.11
537 542 3.950395 CCTTGAGGCTATTTCTCCCTTTG 59.050 47.826 0.00 0.00 0.00 2.77
538 543 4.324563 CCTTGAGGCTATTTCTCCCTTTGA 60.325 45.833 0.00 0.00 0.00 2.69
539 544 4.222124 TGAGGCTATTTCTCCCTTTGAC 57.778 45.455 0.00 0.00 0.00 3.18
540 545 3.054361 TGAGGCTATTTCTCCCTTTGACC 60.054 47.826 0.00 0.00 0.00 4.02
541 546 2.919602 AGGCTATTTCTCCCTTTGACCA 59.080 45.455 0.00 0.00 0.00 4.02
542 547 3.333680 AGGCTATTTCTCCCTTTGACCAA 59.666 43.478 0.00 0.00 0.00 3.67
543 548 4.086457 GGCTATTTCTCCCTTTGACCAAA 58.914 43.478 0.00 0.00 0.00 3.28
544 549 4.526650 GGCTATTTCTCCCTTTGACCAAAA 59.473 41.667 0.00 0.00 0.00 2.44
545 550 5.187772 GGCTATTTCTCCCTTTGACCAAAAT 59.812 40.000 0.00 0.00 0.00 1.82
546 551 6.333416 GCTATTTCTCCCTTTGACCAAAATC 58.667 40.000 0.00 0.00 0.00 2.17
547 552 4.846779 TTTCTCCCTTTGACCAAAATCG 57.153 40.909 0.00 0.00 0.00 3.34
548 553 3.780804 TCTCCCTTTGACCAAAATCGA 57.219 42.857 0.00 0.00 0.00 3.59
549 554 3.408634 TCTCCCTTTGACCAAAATCGAC 58.591 45.455 0.00 0.00 0.00 4.20
550 555 3.072476 TCTCCCTTTGACCAAAATCGACT 59.928 43.478 0.00 0.00 0.00 4.18
551 556 3.146066 TCCCTTTGACCAAAATCGACTG 58.854 45.455 0.00 0.00 0.00 3.51
552 557 3.146066 CCCTTTGACCAAAATCGACTGA 58.854 45.455 0.00 0.00 0.00 3.41
553 558 3.058224 CCCTTTGACCAAAATCGACTGAC 60.058 47.826 0.00 0.00 0.00 3.51
554 559 3.058224 CCTTTGACCAAAATCGACTGACC 60.058 47.826 0.00 0.00 0.00 4.02
555 560 2.178912 TGACCAAAATCGACTGACCC 57.821 50.000 0.00 0.00 0.00 4.46
556 561 1.418264 TGACCAAAATCGACTGACCCA 59.582 47.619 0.00 0.00 0.00 4.51
557 562 2.158740 TGACCAAAATCGACTGACCCAA 60.159 45.455 0.00 0.00 0.00 4.12
558 563 3.081804 GACCAAAATCGACTGACCCAAT 58.918 45.455 0.00 0.00 0.00 3.16
559 564 3.496331 ACCAAAATCGACTGACCCAATT 58.504 40.909 0.00 0.00 0.00 2.32
560 565 3.255642 ACCAAAATCGACTGACCCAATTG 59.744 43.478 0.00 0.00 0.00 2.32
561 566 3.255642 CCAAAATCGACTGACCCAATTGT 59.744 43.478 4.43 0.00 0.00 2.71
562 567 4.229096 CAAAATCGACTGACCCAATTGTG 58.771 43.478 4.43 0.00 0.00 3.33
563 568 3.417069 AATCGACTGACCCAATTGTGA 57.583 42.857 4.43 0.00 0.00 3.58
564 569 2.920724 TCGACTGACCCAATTGTGAA 57.079 45.000 4.43 0.00 0.00 3.18
565 570 3.201353 TCGACTGACCCAATTGTGAAA 57.799 42.857 4.43 0.00 0.00 2.69
566 571 3.546724 TCGACTGACCCAATTGTGAAAA 58.453 40.909 4.43 0.00 0.00 2.29
567 572 3.314080 TCGACTGACCCAATTGTGAAAAC 59.686 43.478 4.43 0.00 0.00 2.43
568 573 3.315191 CGACTGACCCAATTGTGAAAACT 59.685 43.478 4.43 0.00 0.00 2.66
569 574 4.554723 CGACTGACCCAATTGTGAAAACTC 60.555 45.833 4.43 0.00 0.00 3.01
570 575 4.277476 ACTGACCCAATTGTGAAAACTCA 58.723 39.130 4.43 0.00 0.00 3.41
571 576 4.709397 ACTGACCCAATTGTGAAAACTCAA 59.291 37.500 4.43 0.00 0.00 3.02
572 577 5.363580 ACTGACCCAATTGTGAAAACTCAAT 59.636 36.000 4.43 0.00 0.00 2.57
573 578 5.841810 TGACCCAATTGTGAAAACTCAATC 58.158 37.500 4.43 0.00 0.00 2.67
574 579 4.870363 ACCCAATTGTGAAAACTCAATCG 58.130 39.130 4.43 0.00 0.00 3.34
575 580 4.582656 ACCCAATTGTGAAAACTCAATCGA 59.417 37.500 4.43 0.00 0.00 3.59
576 581 4.917415 CCCAATTGTGAAAACTCAATCGAC 59.083 41.667 4.43 0.00 0.00 4.20
577 582 5.278463 CCCAATTGTGAAAACTCAATCGACT 60.278 40.000 4.43 0.00 0.00 4.18
578 583 5.626543 CCAATTGTGAAAACTCAATCGACTG 59.373 40.000 4.43 0.00 0.00 3.51
579 584 6.429624 CAATTGTGAAAACTCAATCGACTGA 58.570 36.000 0.00 0.00 0.00 3.41
580 585 6.618287 ATTGTGAAAACTCAATCGACTGAA 57.382 33.333 0.00 0.00 0.00 3.02
581 586 6.429791 TTGTGAAAACTCAATCGACTGAAA 57.570 33.333 0.00 0.00 0.00 2.69
582 587 6.618287 TGTGAAAACTCAATCGACTGAAAT 57.382 33.333 0.00 0.00 0.00 2.17
583 588 6.429624 TGTGAAAACTCAATCGACTGAAATG 58.570 36.000 0.00 0.00 0.00 2.32
584 589 5.340667 GTGAAAACTCAATCGACTGAAATGC 59.659 40.000 0.00 0.00 0.00 3.56
585 590 5.008514 TGAAAACTCAATCGACTGAAATGCA 59.991 36.000 0.00 0.00 0.00 3.96
597 602 4.871993 CTGAAATGCAGCTATTTCGTCT 57.128 40.909 14.37 0.00 45.56 4.18
598 603 5.973651 CTGAAATGCAGCTATTTCGTCTA 57.026 39.130 14.37 0.56 45.56 2.59
599 604 6.349973 CTGAAATGCAGCTATTTCGTCTAA 57.650 37.500 14.37 0.28 45.56 2.10
600 605 6.106877 TGAAATGCAGCTATTTCGTCTAAC 57.893 37.500 14.37 0.00 45.56 2.34
601 606 5.641636 TGAAATGCAGCTATTTCGTCTAACA 59.358 36.000 14.37 0.00 45.56 2.41
602 607 6.316140 TGAAATGCAGCTATTTCGTCTAACAT 59.684 34.615 14.37 0.00 45.56 2.71
603 608 5.663795 ATGCAGCTATTTCGTCTAACATG 57.336 39.130 0.00 0.00 0.00 3.21
604 609 4.754322 TGCAGCTATTTCGTCTAACATGA 58.246 39.130 0.00 0.00 0.00 3.07
605 610 4.805719 TGCAGCTATTTCGTCTAACATGAG 59.194 41.667 0.00 0.00 0.00 2.90
606 611 4.210120 GCAGCTATTTCGTCTAACATGAGG 59.790 45.833 0.00 0.00 0.00 3.86
607 612 5.592054 CAGCTATTTCGTCTAACATGAGGA 58.408 41.667 0.00 0.00 0.00 3.71
641 647 3.518634 AAACGGTTGTGCAAAGTTGAT 57.481 38.095 0.00 0.00 0.00 2.57
726 2140 7.707104 ACAAAGATCAAAAGTTAGTTGTGAGG 58.293 34.615 0.00 0.00 0.00 3.86
752 2166 4.487948 CGTTCCACCGTCTATGAAAAGTA 58.512 43.478 0.00 0.00 0.00 2.24
872 2294 2.677979 GGCTCGTCTCCAAAACGGC 61.678 63.158 0.00 0.00 40.45 5.68
873 2295 2.677979 GCTCGTCTCCAAAACGGCC 61.678 63.158 0.00 0.00 40.45 6.13
875 2297 1.291877 CTCGTCTCCAAAACGGCCTG 61.292 60.000 0.00 0.00 40.45 4.85
876 2298 2.954611 GTCTCCAAAACGGCCTGC 59.045 61.111 0.00 0.00 33.14 4.85
877 2299 2.282180 TCTCCAAAACGGCCTGCC 60.282 61.111 0.00 0.00 33.14 4.85
879 2301 1.002624 CTCCAAAACGGCCTGCCTA 60.003 57.895 6.60 0.00 33.14 3.93
881 2303 1.303317 CCAAAACGGCCTGCCTAGT 60.303 57.895 6.60 0.00 0.00 2.57
882 2304 0.035820 CCAAAACGGCCTGCCTAGTA 60.036 55.000 6.60 0.00 0.00 1.82
883 2305 1.084289 CAAAACGGCCTGCCTAGTAC 58.916 55.000 6.60 0.00 0.00 2.73
935 2416 2.768253 TCGATCAGCACAAGGAACAT 57.232 45.000 0.00 0.00 0.00 2.71
994 2492 2.434185 GATCGCCTGCCAACGTCA 60.434 61.111 0.00 0.00 0.00 4.35
1709 3600 2.369394 CCCATGGAAAGACTACTTGGC 58.631 52.381 15.22 0.00 36.39 4.52
1719 3610 4.077184 TACTTGGCCCCGACGCAG 62.077 66.667 0.00 0.00 0.00 5.18
1835 3726 1.141881 GCGAGGTGATGTCGTGGAT 59.858 57.895 0.00 0.00 39.69 3.41
1980 3875 1.956620 GCTAAAGTGCACGCCTCGAC 61.957 60.000 12.01 0.00 0.00 4.20
1981 3876 1.352156 CTAAAGTGCACGCCTCGACC 61.352 60.000 12.01 0.00 0.00 4.79
2946 4842 3.786576 CGATGATGTACTGACGTTGAGAC 59.213 47.826 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 17 4.142038 GGTTTGGGAACACATCACTTAGT 58.858 43.478 0.00 0.00 42.67 2.24
91 96 2.586258 ATAGATCTCGTGTGTGTGCC 57.414 50.000 0.00 0.00 0.00 5.01
101 106 7.834068 TTTTGGACTCTTCAAATAGATCTCG 57.166 36.000 0.00 0.00 34.58 4.04
147 152 1.609501 TCGACTGCCTTGTAGCCCT 60.610 57.895 0.00 0.00 0.00 5.19
148 153 1.448013 GTCGACTGCCTTGTAGCCC 60.448 63.158 8.70 0.00 0.00 5.19
149 154 0.737715 CAGTCGACTGCCTTGTAGCC 60.738 60.000 31.00 0.00 37.15 3.93
150 155 0.243907 TCAGTCGACTGCCTTGTAGC 59.756 55.000 35.48 0.00 43.46 3.58
151 156 2.724977 TTCAGTCGACTGCCTTGTAG 57.275 50.000 35.48 14.08 43.46 2.74
152 157 3.678056 ATTTCAGTCGACTGCCTTGTA 57.322 42.857 35.48 18.15 43.46 2.41
153 158 2.550830 ATTTCAGTCGACTGCCTTGT 57.449 45.000 35.48 18.61 43.46 3.16
154 159 3.250762 TGAAATTTCAGTCGACTGCCTTG 59.749 43.478 35.48 17.04 43.46 3.61
155 160 3.476552 TGAAATTTCAGTCGACTGCCTT 58.523 40.909 35.48 24.84 43.46 4.35
156 161 3.126001 TGAAATTTCAGTCGACTGCCT 57.874 42.857 35.48 21.13 43.46 4.75
157 162 4.425577 AATGAAATTTCAGTCGACTGCC 57.574 40.909 35.48 20.49 43.46 4.85
158 163 4.618489 CCAAATGAAATTTCAGTCGACTGC 59.382 41.667 35.48 22.49 44.81 4.40
159 164 6.000891 TCCAAATGAAATTTCAGTCGACTG 57.999 37.500 34.76 34.76 44.81 3.51
160 165 6.824305 ATCCAAATGAAATTTCAGTCGACT 57.176 33.333 24.17 13.58 44.81 4.18
161 166 8.237267 ACTAATCCAAATGAAATTTCAGTCGAC 58.763 33.333 24.17 7.70 44.81 4.20
162 167 8.335532 ACTAATCCAAATGAAATTTCAGTCGA 57.664 30.769 24.17 19.65 44.81 4.20
163 168 8.236586 TGACTAATCCAAATGAAATTTCAGTCG 58.763 33.333 24.17 12.81 44.81 4.18
164 169 9.912634 TTGACTAATCCAAATGAAATTTCAGTC 57.087 29.630 24.17 20.41 44.81 3.51
173 178 9.642327 CATGTTGATTTGACTAATCCAAATGAA 57.358 29.630 7.62 1.89 42.35 2.57
174 179 9.022884 TCATGTTGATTTGACTAATCCAAATGA 57.977 29.630 10.53 10.53 42.35 2.57
175 180 9.642327 TTCATGTTGATTTGACTAATCCAAATG 57.358 29.630 7.09 7.17 42.35 2.32
177 182 9.474920 GTTTCATGTTGATTTGACTAATCCAAA 57.525 29.630 7.09 0.00 41.68 3.28
178 183 7.807433 CGTTTCATGTTGATTTGACTAATCCAA 59.193 33.333 7.09 0.55 41.68 3.53
179 184 7.040755 ACGTTTCATGTTGATTTGACTAATCCA 60.041 33.333 7.09 0.43 41.68 3.41
180 185 7.305474 ACGTTTCATGTTGATTTGACTAATCC 58.695 34.615 7.09 0.00 41.68 3.01
181 186 8.728088 AACGTTTCATGTTGATTTGACTAATC 57.272 30.769 0.00 3.03 42.52 1.75
182 187 9.825972 CTAACGTTTCATGTTGATTTGACTAAT 57.174 29.630 5.91 0.00 0.00 1.73
183 188 9.047371 TCTAACGTTTCATGTTGATTTGACTAA 57.953 29.630 5.91 0.00 0.00 2.24
184 189 8.596271 TCTAACGTTTCATGTTGATTTGACTA 57.404 30.769 5.91 0.00 0.00 2.59
185 190 7.490962 TCTAACGTTTCATGTTGATTTGACT 57.509 32.000 5.91 0.00 0.00 3.41
186 191 9.820229 TTATCTAACGTTTCATGTTGATTTGAC 57.180 29.630 5.91 0.00 0.00 3.18
212 217 4.454504 AGATAATCTGGTGCGTTCGTTTTT 59.545 37.500 0.00 0.00 0.00 1.94
213 218 4.000988 AGATAATCTGGTGCGTTCGTTTT 58.999 39.130 0.00 0.00 0.00 2.43
214 219 3.596214 AGATAATCTGGTGCGTTCGTTT 58.404 40.909 0.00 0.00 0.00 3.60
215 220 3.119101 AGAGATAATCTGGTGCGTTCGTT 60.119 43.478 0.00 0.00 36.69 3.85
216 221 2.427453 AGAGATAATCTGGTGCGTTCGT 59.573 45.455 0.00 0.00 36.69 3.85
217 222 3.085443 AGAGATAATCTGGTGCGTTCG 57.915 47.619 0.00 0.00 36.69 3.95
218 223 4.688021 AGAAGAGATAATCTGGTGCGTTC 58.312 43.478 0.00 0.00 38.67 3.95
219 224 4.744795 AGAAGAGATAATCTGGTGCGTT 57.255 40.909 0.00 0.00 38.67 4.84
220 225 4.038162 GGTAGAAGAGATAATCTGGTGCGT 59.962 45.833 0.00 0.00 38.67 5.24
221 226 4.279671 AGGTAGAAGAGATAATCTGGTGCG 59.720 45.833 0.00 0.00 38.67 5.34
222 227 5.563867 CGAGGTAGAAGAGATAATCTGGTGC 60.564 48.000 0.00 0.00 38.67 5.01
223 228 5.765677 TCGAGGTAGAAGAGATAATCTGGTG 59.234 44.000 0.00 0.00 38.67 4.17
224 229 5.942961 TCGAGGTAGAAGAGATAATCTGGT 58.057 41.667 0.00 0.00 38.67 4.00
225 230 6.885952 TTCGAGGTAGAAGAGATAATCTGG 57.114 41.667 0.00 0.00 38.67 3.86
226 231 7.094975 ACGATTCGAGGTAGAAGAGATAATCTG 60.095 40.741 13.95 0.00 38.67 2.90
227 232 6.938030 ACGATTCGAGGTAGAAGAGATAATCT 59.062 38.462 13.95 0.00 41.27 2.40
228 233 7.136289 ACGATTCGAGGTAGAAGAGATAATC 57.864 40.000 13.95 0.00 33.19 1.75
229 234 7.513371 AACGATTCGAGGTAGAAGAGATAAT 57.487 36.000 13.95 0.00 33.19 1.28
230 235 6.939132 AACGATTCGAGGTAGAAGAGATAA 57.061 37.500 13.95 0.00 33.19 1.75
231 236 6.766944 AGAAACGATTCGAGGTAGAAGAGATA 59.233 38.462 13.95 0.00 40.63 1.98
232 237 5.591067 AGAAACGATTCGAGGTAGAAGAGAT 59.409 40.000 13.95 0.00 40.63 2.75
233 238 4.942483 AGAAACGATTCGAGGTAGAAGAGA 59.058 41.667 13.95 0.00 40.63 3.10
234 239 5.238006 AGAAACGATTCGAGGTAGAAGAG 57.762 43.478 13.95 0.00 40.63 2.85
235 240 5.392811 GGAAGAAACGATTCGAGGTAGAAGA 60.393 44.000 13.95 0.00 40.63 2.87
236 241 4.799428 GGAAGAAACGATTCGAGGTAGAAG 59.201 45.833 13.95 0.00 40.63 2.85
237 242 4.461781 AGGAAGAAACGATTCGAGGTAGAA 59.538 41.667 13.95 0.00 40.63 2.10
238 243 4.015084 AGGAAGAAACGATTCGAGGTAGA 58.985 43.478 13.95 0.00 40.63 2.59
239 244 4.106197 CAGGAAGAAACGATTCGAGGTAG 58.894 47.826 13.95 0.00 40.63 3.18
240 245 3.760151 TCAGGAAGAAACGATTCGAGGTA 59.240 43.478 13.95 0.00 40.63 3.08
241 246 2.561419 TCAGGAAGAAACGATTCGAGGT 59.439 45.455 13.95 0.00 40.63 3.85
242 247 3.232213 TCAGGAAGAAACGATTCGAGG 57.768 47.619 13.95 0.00 40.63 4.63
243 248 5.050363 TGTTTTCAGGAAGAAACGATTCGAG 60.050 40.000 13.95 0.00 45.48 4.04
244 249 4.812091 TGTTTTCAGGAAGAAACGATTCGA 59.188 37.500 13.95 0.00 45.48 3.71
245 250 5.090652 TGTTTTCAGGAAGAAACGATTCG 57.909 39.130 4.14 4.14 45.48 3.34
246 251 7.636359 CGATATGTTTTCAGGAAGAAACGATTC 59.364 37.037 0.00 0.00 45.48 2.52
247 252 7.119262 ACGATATGTTTTCAGGAAGAAACGATT 59.881 33.333 0.00 0.00 45.48 3.34
248 253 6.594159 ACGATATGTTTTCAGGAAGAAACGAT 59.406 34.615 0.00 0.00 45.48 3.73
249 254 5.929992 ACGATATGTTTTCAGGAAGAAACGA 59.070 36.000 0.00 0.00 45.48 3.85
250 255 6.090898 AGACGATATGTTTTCAGGAAGAAACG 59.909 38.462 0.00 0.00 45.48 3.60
251 256 7.365840 AGACGATATGTTTTCAGGAAGAAAC 57.634 36.000 0.00 0.00 45.48 2.78
252 257 7.119262 GGAAGACGATATGTTTTCAGGAAGAAA 59.881 37.037 0.00 0.00 42.07 2.52
253 258 6.594159 GGAAGACGATATGTTTTCAGGAAGAA 59.406 38.462 0.00 0.00 42.07 2.52
254 259 6.106673 GGAAGACGATATGTTTTCAGGAAGA 58.893 40.000 0.00 0.00 42.07 2.87
255 260 5.294552 GGGAAGACGATATGTTTTCAGGAAG 59.705 44.000 0.00 0.00 42.07 3.46
256 261 5.183228 GGGAAGACGATATGTTTTCAGGAA 58.817 41.667 0.00 0.00 42.07 3.36
257 262 4.383770 GGGGAAGACGATATGTTTTCAGGA 60.384 45.833 0.00 0.00 42.07 3.86
258 263 3.877508 GGGGAAGACGATATGTTTTCAGG 59.122 47.826 0.00 0.00 42.07 3.86
259 264 3.555956 CGGGGAAGACGATATGTTTTCAG 59.444 47.826 0.00 0.00 42.07 3.02
260 265 3.527533 CGGGGAAGACGATATGTTTTCA 58.472 45.455 0.00 0.00 42.07 2.69
261 266 2.287103 GCGGGGAAGACGATATGTTTTC 59.713 50.000 0.00 0.00 40.14 2.29
262 267 2.285977 GCGGGGAAGACGATATGTTTT 58.714 47.619 0.00 0.00 0.00 2.43
263 268 1.474498 GGCGGGGAAGACGATATGTTT 60.474 52.381 0.00 0.00 0.00 2.83
264 269 0.106149 GGCGGGGAAGACGATATGTT 59.894 55.000 0.00 0.00 0.00 2.71
265 270 1.746517 GGCGGGGAAGACGATATGT 59.253 57.895 0.00 0.00 0.00 2.29
266 271 4.675404 GGCGGGGAAGACGATATG 57.325 61.111 0.00 0.00 0.00 1.78
332 337 4.029809 GTGGTTCCGGGGAGGGTG 62.030 72.222 0.00 0.00 41.52 4.61
340 345 4.029809 GAGGTGGGGTGGTTCCGG 62.030 72.222 0.00 0.00 37.00 5.14
341 346 4.029809 GGAGGTGGGGTGGTTCCG 62.030 72.222 0.00 0.00 37.00 4.30
342 347 2.856988 TGGAGGTGGGGTGGTTCC 60.857 66.667 0.00 0.00 0.00 3.62
343 348 2.125766 GACTGGAGGTGGGGTGGTTC 62.126 65.000 0.00 0.00 0.00 3.62
344 349 2.038762 ACTGGAGGTGGGGTGGTT 60.039 61.111 0.00 0.00 0.00 3.67
345 350 2.529389 GACTGGAGGTGGGGTGGT 60.529 66.667 0.00 0.00 0.00 4.16
346 351 2.203998 AGACTGGAGGTGGGGTGG 60.204 66.667 0.00 0.00 0.00 4.61
347 352 2.294078 GGAGACTGGAGGTGGGGTG 61.294 68.421 0.00 0.00 0.00 4.61
348 353 2.122954 GGAGACTGGAGGTGGGGT 59.877 66.667 0.00 0.00 0.00 4.95
349 354 2.689034 GGGAGACTGGAGGTGGGG 60.689 72.222 0.00 0.00 0.00 4.96
350 355 2.122729 TGGGAGACTGGAGGTGGG 59.877 66.667 0.00 0.00 0.00 4.61
351 356 2.294078 GGTGGGAGACTGGAGGTGG 61.294 68.421 0.00 0.00 0.00 4.61
352 357 2.650116 CGGTGGGAGACTGGAGGTG 61.650 68.421 0.00 0.00 0.00 4.00
353 358 2.283966 CGGTGGGAGACTGGAGGT 60.284 66.667 0.00 0.00 0.00 3.85
354 359 3.775654 GCGGTGGGAGACTGGAGG 61.776 72.222 0.00 0.00 0.00 4.30
355 360 3.775654 GGCGGTGGGAGACTGGAG 61.776 72.222 0.00 0.00 0.00 3.86
371 376 2.925170 CTAGAGGGATGGCCGGGG 60.925 72.222 2.18 0.00 33.83 5.73
372 377 2.925170 CCTAGAGGGATGGCCGGG 60.925 72.222 2.18 0.00 37.23 5.73
373 378 3.631046 GCCTAGAGGGATGGCCGG 61.631 72.222 0.00 0.00 40.71 6.13
376 381 2.122189 AGGGCCTAGAGGGATGGC 60.122 66.667 2.82 0.00 45.42 4.40
377 382 2.524204 GCAGGGCCTAGAGGGATGG 61.524 68.421 5.28 0.00 37.23 3.51
378 383 2.524204 GGCAGGGCCTAGAGGGATG 61.524 68.421 5.28 0.00 46.69 3.51
379 384 2.122189 GGCAGGGCCTAGAGGGAT 60.122 66.667 5.28 0.00 46.69 3.85
389 394 4.643387 AACTCGGTGTGGCAGGGC 62.643 66.667 0.00 0.00 0.00 5.19
390 395 1.106944 AAAAACTCGGTGTGGCAGGG 61.107 55.000 0.00 0.00 0.00 4.45
391 396 2.414750 AAAAACTCGGTGTGGCAGG 58.585 52.632 0.00 0.00 0.00 4.85
406 411 0.678684 GGGGATTCGCCGGAGAAAAA 60.679 55.000 24.75 2.09 37.63 1.94
407 412 1.078001 GGGGATTCGCCGGAGAAAA 60.078 57.895 24.75 2.94 37.63 2.29
408 413 2.294839 TGGGGATTCGCCGGAGAAA 61.295 57.895 24.75 4.85 39.47 2.52
409 414 2.685743 TGGGGATTCGCCGGAGAA 60.686 61.111 23.27 23.27 39.47 2.87
410 415 3.467226 GTGGGGATTCGCCGGAGA 61.467 66.667 5.05 3.81 39.47 3.71
411 416 3.781307 TGTGGGGATTCGCCGGAG 61.781 66.667 5.05 0.00 39.47 4.63
412 417 4.090588 GTGTGGGGATTCGCCGGA 62.091 66.667 5.05 1.30 39.47 5.14
414 419 4.402528 TGGTGTGGGGATTCGCCG 62.403 66.667 14.39 0.00 39.47 6.46
415 420 2.750237 GTGGTGTGGGGATTCGCC 60.750 66.667 12.66 12.66 36.97 5.54
416 421 2.750237 GGTGGTGTGGGGATTCGC 60.750 66.667 0.00 0.00 0.00 4.70
417 422 2.435938 CGGTGGTGTGGGGATTCG 60.436 66.667 0.00 0.00 0.00 3.34
418 423 2.750237 GCGGTGGTGTGGGGATTC 60.750 66.667 0.00 0.00 0.00 2.52
419 424 4.360405 GGCGGTGGTGTGGGGATT 62.360 66.667 0.00 0.00 0.00 3.01
435 440 2.611486 TTAGGGTTCGGGGTGGGG 60.611 66.667 0.00 0.00 0.00 4.96
436 441 0.986550 ATCTTAGGGTTCGGGGTGGG 60.987 60.000 0.00 0.00 0.00 4.61
437 442 1.692519 CTATCTTAGGGTTCGGGGTGG 59.307 57.143 0.00 0.00 0.00 4.61
438 443 1.070289 GCTATCTTAGGGTTCGGGGTG 59.930 57.143 0.00 0.00 0.00 4.61
439 444 1.421480 GCTATCTTAGGGTTCGGGGT 58.579 55.000 0.00 0.00 0.00 4.95
440 445 0.685660 GGCTATCTTAGGGTTCGGGG 59.314 60.000 0.00 0.00 0.00 5.73
441 446 1.070289 GTGGCTATCTTAGGGTTCGGG 59.930 57.143 0.00 0.00 0.00 5.14
442 447 1.070289 GGTGGCTATCTTAGGGTTCGG 59.930 57.143 0.00 0.00 0.00 4.30
443 448 1.269621 CGGTGGCTATCTTAGGGTTCG 60.270 57.143 0.00 0.00 0.00 3.95
444 449 1.070289 CCGGTGGCTATCTTAGGGTTC 59.930 57.143 0.00 0.00 0.00 3.62
445 450 1.129058 CCGGTGGCTATCTTAGGGTT 58.871 55.000 0.00 0.00 0.00 4.11
446 451 0.763223 CCCGGTGGCTATCTTAGGGT 60.763 60.000 0.00 0.00 33.00 4.34
447 452 1.481056 CCCCGGTGGCTATCTTAGGG 61.481 65.000 0.00 0.00 37.20 3.53
448 453 0.763223 ACCCCGGTGGCTATCTTAGG 60.763 60.000 0.00 0.00 37.83 2.69
449 454 1.893801 CTACCCCGGTGGCTATCTTAG 59.106 57.143 0.00 0.00 37.83 2.18
450 455 2.005370 CTACCCCGGTGGCTATCTTA 57.995 55.000 0.00 0.00 37.83 2.10
451 456 1.408453 GCTACCCCGGTGGCTATCTT 61.408 60.000 14.43 0.00 46.81 2.40
452 457 1.837499 GCTACCCCGGTGGCTATCT 60.837 63.158 14.43 0.00 46.81 1.98
453 458 2.741747 GCTACCCCGGTGGCTATC 59.258 66.667 14.43 0.00 46.81 2.08
465 470 2.125106 CTCGTTGGGCAGGCTACC 60.125 66.667 0.00 0.00 0.00 3.18
466 471 2.804828 AAGCTCGTTGGGCAGGCTAC 62.805 60.000 0.00 0.00 32.64 3.58
467 472 2.521958 GAAGCTCGTTGGGCAGGCTA 62.522 60.000 0.00 0.00 32.64 3.93
468 473 3.909086 GAAGCTCGTTGGGCAGGCT 62.909 63.158 0.00 0.00 34.52 4.58
469 474 3.435186 GAAGCTCGTTGGGCAGGC 61.435 66.667 0.00 0.00 0.00 4.85
470 475 1.301677 GAAGAAGCTCGTTGGGCAGG 61.302 60.000 0.00 0.00 0.00 4.85
471 476 1.301677 GGAAGAAGCTCGTTGGGCAG 61.302 60.000 0.00 0.00 0.00 4.85
472 477 1.302511 GGAAGAAGCTCGTTGGGCA 60.303 57.895 0.00 0.00 0.00 5.36
473 478 1.003233 AGGAAGAAGCTCGTTGGGC 60.003 57.895 0.00 0.00 0.00 5.36
474 479 0.391793 GGAGGAAGAAGCTCGTTGGG 60.392 60.000 0.00 0.00 0.00 4.12
475 480 0.391793 GGGAGGAAGAAGCTCGTTGG 60.392 60.000 0.00 0.00 0.00 3.77
476 481 0.391793 GGGGAGGAAGAAGCTCGTTG 60.392 60.000 0.00 0.00 0.00 4.10
477 482 0.545548 AGGGGAGGAAGAAGCTCGTT 60.546 55.000 0.00 0.00 0.00 3.85
478 483 0.973496 GAGGGGAGGAAGAAGCTCGT 60.973 60.000 0.00 0.00 0.00 4.18
479 484 1.681486 GGAGGGGAGGAAGAAGCTCG 61.681 65.000 0.00 0.00 0.00 5.03
480 485 1.681486 CGGAGGGGAGGAAGAAGCTC 61.681 65.000 0.00 0.00 0.00 4.09
481 486 1.687493 CGGAGGGGAGGAAGAAGCT 60.687 63.158 0.00 0.00 0.00 3.74
482 487 1.051556 ATCGGAGGGGAGGAAGAAGC 61.052 60.000 0.00 0.00 0.00 3.86
483 488 0.755686 CATCGGAGGGGAGGAAGAAG 59.244 60.000 0.00 0.00 0.00 2.85
484 489 0.338467 TCATCGGAGGGGAGGAAGAA 59.662 55.000 0.00 0.00 0.00 2.52
485 490 0.105964 CTCATCGGAGGGGAGGAAGA 60.106 60.000 0.00 0.00 37.51 2.87
486 491 0.397816 ACTCATCGGAGGGGAGGAAG 60.398 60.000 0.00 0.00 45.81 3.46
487 492 0.042731 AACTCATCGGAGGGGAGGAA 59.957 55.000 0.00 0.00 45.81 3.36
488 493 0.042731 AAACTCATCGGAGGGGAGGA 59.957 55.000 0.00 0.00 45.81 3.71
489 494 0.466124 GAAACTCATCGGAGGGGAGG 59.534 60.000 0.00 0.00 45.81 4.30
490 495 1.490574 AGAAACTCATCGGAGGGGAG 58.509 55.000 0.00 0.00 45.81 4.30
491 496 1.831736 GAAGAAACTCATCGGAGGGGA 59.168 52.381 0.00 0.00 45.81 4.81
492 497 1.134371 GGAAGAAACTCATCGGAGGGG 60.134 57.143 0.00 0.00 45.81 4.79
493 498 1.834263 AGGAAGAAACTCATCGGAGGG 59.166 52.381 0.00 0.00 45.81 4.30
494 499 2.159028 GGAGGAAGAAACTCATCGGAGG 60.159 54.545 0.00 0.00 45.81 4.30
495 500 2.159028 GGGAGGAAGAAACTCATCGGAG 60.159 54.545 0.00 0.00 46.96 4.63
496 501 1.831736 GGGAGGAAGAAACTCATCGGA 59.168 52.381 0.00 0.00 36.70 4.55
497 502 1.834263 AGGGAGGAAGAAACTCATCGG 59.166 52.381 0.00 0.00 36.70 4.18
498 503 3.055819 TCAAGGGAGGAAGAAACTCATCG 60.056 47.826 0.00 0.00 36.70 3.84
499 504 4.512484 CTCAAGGGAGGAAGAAACTCATC 58.488 47.826 0.00 0.00 37.51 2.92
500 505 4.566426 CTCAAGGGAGGAAGAAACTCAT 57.434 45.455 0.00 0.00 37.51 2.90
512 517 2.105649 GGGAGAAATAGCCTCAAGGGAG 59.894 54.545 0.00 0.00 41.02 4.30
513 518 2.127708 GGGAGAAATAGCCTCAAGGGA 58.872 52.381 0.00 0.00 37.23 4.20
514 519 2.131023 AGGGAGAAATAGCCTCAAGGG 58.869 52.381 0.00 0.00 35.18 3.95
515 520 3.941704 AAGGGAGAAATAGCCTCAAGG 57.058 47.619 0.00 0.00 38.53 3.61
516 521 4.637977 GTCAAAGGGAGAAATAGCCTCAAG 59.362 45.833 0.00 0.00 32.48 3.02
517 522 4.567747 GGTCAAAGGGAGAAATAGCCTCAA 60.568 45.833 0.00 0.00 32.48 3.02
518 523 3.054361 GGTCAAAGGGAGAAATAGCCTCA 60.054 47.826 0.00 0.00 32.48 3.86
519 524 3.054361 TGGTCAAAGGGAGAAATAGCCTC 60.054 47.826 0.00 0.00 0.00 4.70
520 525 2.919602 TGGTCAAAGGGAGAAATAGCCT 59.080 45.455 0.00 0.00 0.00 4.58
521 526 3.366052 TGGTCAAAGGGAGAAATAGCC 57.634 47.619 0.00 0.00 0.00 3.93
522 527 5.722021 TTTTGGTCAAAGGGAGAAATAGC 57.278 39.130 0.00 0.00 0.00 2.97
523 528 6.374333 TCGATTTTGGTCAAAGGGAGAAATAG 59.626 38.462 0.00 0.00 0.00 1.73
524 529 6.150474 GTCGATTTTGGTCAAAGGGAGAAATA 59.850 38.462 0.00 0.00 0.00 1.40
525 530 5.048013 GTCGATTTTGGTCAAAGGGAGAAAT 60.048 40.000 0.00 0.00 0.00 2.17
526 531 4.277423 GTCGATTTTGGTCAAAGGGAGAAA 59.723 41.667 0.00 0.00 0.00 2.52
527 532 3.818773 GTCGATTTTGGTCAAAGGGAGAA 59.181 43.478 0.00 0.00 0.00 2.87
528 533 3.072476 AGTCGATTTTGGTCAAAGGGAGA 59.928 43.478 0.00 0.00 0.00 3.71
529 534 3.189287 CAGTCGATTTTGGTCAAAGGGAG 59.811 47.826 0.00 0.00 0.00 4.30
530 535 3.146066 CAGTCGATTTTGGTCAAAGGGA 58.854 45.455 0.00 0.00 0.00 4.20
531 536 3.058224 GTCAGTCGATTTTGGTCAAAGGG 60.058 47.826 0.00 0.00 0.00 3.95
532 537 3.058224 GGTCAGTCGATTTTGGTCAAAGG 60.058 47.826 0.00 0.00 0.00 3.11
533 538 3.058224 GGGTCAGTCGATTTTGGTCAAAG 60.058 47.826 0.00 0.00 0.00 2.77
534 539 2.882137 GGGTCAGTCGATTTTGGTCAAA 59.118 45.455 0.00 0.00 0.00 2.69
535 540 2.158740 TGGGTCAGTCGATTTTGGTCAA 60.159 45.455 0.00 0.00 0.00 3.18
536 541 1.418264 TGGGTCAGTCGATTTTGGTCA 59.582 47.619 0.00 0.00 0.00 4.02
537 542 2.178912 TGGGTCAGTCGATTTTGGTC 57.821 50.000 0.00 0.00 0.00 4.02
538 543 2.649531 TTGGGTCAGTCGATTTTGGT 57.350 45.000 0.00 0.00 0.00 3.67
539 544 3.255642 ACAATTGGGTCAGTCGATTTTGG 59.744 43.478 10.83 0.00 0.00 3.28
540 545 4.023279 TCACAATTGGGTCAGTCGATTTTG 60.023 41.667 7.75 0.00 0.00 2.44
541 546 4.141287 TCACAATTGGGTCAGTCGATTTT 58.859 39.130 7.75 0.00 0.00 1.82
542 547 3.750371 TCACAATTGGGTCAGTCGATTT 58.250 40.909 7.75 0.00 0.00 2.17
543 548 3.417069 TCACAATTGGGTCAGTCGATT 57.583 42.857 7.75 0.00 0.00 3.34
544 549 3.417069 TTCACAATTGGGTCAGTCGAT 57.583 42.857 7.75 0.00 0.00 3.59
545 550 2.920724 TTCACAATTGGGTCAGTCGA 57.079 45.000 7.75 0.00 0.00 4.20
546 551 3.315191 AGTTTTCACAATTGGGTCAGTCG 59.685 43.478 7.75 0.00 0.00 4.18
547 552 4.338118 TGAGTTTTCACAATTGGGTCAGTC 59.662 41.667 7.75 6.08 0.00 3.51
548 553 4.277476 TGAGTTTTCACAATTGGGTCAGT 58.723 39.130 7.75 0.00 0.00 3.41
549 554 4.916983 TGAGTTTTCACAATTGGGTCAG 57.083 40.909 7.75 0.00 0.00 3.51
550 555 5.507149 CGATTGAGTTTTCACAATTGGGTCA 60.507 40.000 7.75 0.36 40.20 4.02
551 556 4.917415 CGATTGAGTTTTCACAATTGGGTC 59.083 41.667 7.75 0.00 40.20 4.46
552 557 4.582656 TCGATTGAGTTTTCACAATTGGGT 59.417 37.500 7.75 0.00 40.20 4.51
553 558 4.917415 GTCGATTGAGTTTTCACAATTGGG 59.083 41.667 10.83 5.72 40.20 4.12
554 559 5.626543 CAGTCGATTGAGTTTTCACAATTGG 59.373 40.000 10.83 0.00 40.20 3.16
555 560 6.429624 TCAGTCGATTGAGTTTTCACAATTG 58.570 36.000 6.51 3.24 40.20 2.32
556 561 6.618287 TCAGTCGATTGAGTTTTCACAATT 57.382 33.333 6.51 0.00 40.20 2.32
557 562 6.618287 TTCAGTCGATTGAGTTTTCACAAT 57.382 33.333 10.70 0.00 42.12 2.71
558 563 6.429791 TTTCAGTCGATTGAGTTTTCACAA 57.570 33.333 10.70 0.00 35.16 3.33
559 564 6.429624 CATTTCAGTCGATTGAGTTTTCACA 58.570 36.000 10.70 0.00 31.71 3.58
560 565 5.340667 GCATTTCAGTCGATTGAGTTTTCAC 59.659 40.000 10.70 0.00 31.71 3.18
561 566 5.008514 TGCATTTCAGTCGATTGAGTTTTCA 59.991 36.000 10.70 4.70 0.00 2.69
562 567 5.451908 TGCATTTCAGTCGATTGAGTTTTC 58.548 37.500 10.70 2.38 0.00 2.29
563 568 5.437289 TGCATTTCAGTCGATTGAGTTTT 57.563 34.783 10.70 0.00 0.00 2.43
564 569 4.614535 GCTGCATTTCAGTCGATTGAGTTT 60.615 41.667 10.70 0.00 44.66 2.66
565 570 3.120060 GCTGCATTTCAGTCGATTGAGTT 60.120 43.478 10.70 0.21 44.66 3.01
566 571 2.417933 GCTGCATTTCAGTCGATTGAGT 59.582 45.455 10.70 1.77 44.66 3.41
567 572 2.676839 AGCTGCATTTCAGTCGATTGAG 59.323 45.455 10.70 1.29 44.66 3.02
568 573 2.703416 AGCTGCATTTCAGTCGATTGA 58.297 42.857 6.51 6.51 44.66 2.57
569 574 4.808077 ATAGCTGCATTTCAGTCGATTG 57.192 40.909 1.02 0.68 44.66 2.67
570 575 5.503031 CGAAATAGCTGCATTTCAGTCGATT 60.503 40.000 23.92 0.00 42.54 3.34
571 576 4.025396 CGAAATAGCTGCATTTCAGTCGAT 60.025 41.667 23.92 0.00 42.54 3.59
572 577 3.306973 CGAAATAGCTGCATTTCAGTCGA 59.693 43.478 23.92 0.00 42.54 4.20
573 578 3.062639 ACGAAATAGCTGCATTTCAGTCG 59.937 43.478 23.92 17.81 42.54 4.18
574 579 4.331168 AGACGAAATAGCTGCATTTCAGTC 59.669 41.667 26.43 26.43 42.54 3.51
575 580 4.256920 AGACGAAATAGCTGCATTTCAGT 58.743 39.130 23.92 21.87 42.54 3.41
576 581 4.871993 AGACGAAATAGCTGCATTTCAG 57.128 40.909 23.92 20.13 42.54 3.02
577 582 5.641636 TGTTAGACGAAATAGCTGCATTTCA 59.358 36.000 23.92 11.41 42.54 2.69
578 583 6.106877 TGTTAGACGAAATAGCTGCATTTC 57.893 37.500 18.93 18.93 40.17 2.17
579 584 6.316140 TCATGTTAGACGAAATAGCTGCATTT 59.684 34.615 1.02 6.11 0.00 2.32
580 585 5.817296 TCATGTTAGACGAAATAGCTGCATT 59.183 36.000 1.02 0.00 0.00 3.56
581 586 5.359756 TCATGTTAGACGAAATAGCTGCAT 58.640 37.500 1.02 0.00 0.00 3.96
582 587 4.754322 TCATGTTAGACGAAATAGCTGCA 58.246 39.130 1.02 0.00 0.00 4.41
583 588 4.210120 CCTCATGTTAGACGAAATAGCTGC 59.790 45.833 0.00 0.00 0.00 5.25
584 589 5.592054 TCCTCATGTTAGACGAAATAGCTG 58.408 41.667 0.00 0.00 0.00 4.24
585 590 5.854010 TCCTCATGTTAGACGAAATAGCT 57.146 39.130 0.00 0.00 0.00 3.32
586 591 6.309251 GCTATCCTCATGTTAGACGAAATAGC 59.691 42.308 0.00 0.00 0.00 2.97
587 592 7.598278 AGCTATCCTCATGTTAGACGAAATAG 58.402 38.462 0.00 0.00 0.00 1.73
588 593 7.526142 AGCTATCCTCATGTTAGACGAAATA 57.474 36.000 0.00 0.00 0.00 1.40
589 594 6.412362 AGCTATCCTCATGTTAGACGAAAT 57.588 37.500 0.00 0.00 0.00 2.17
590 595 5.854010 AGCTATCCTCATGTTAGACGAAA 57.146 39.130 0.00 0.00 0.00 3.46
591 596 5.854010 AAGCTATCCTCATGTTAGACGAA 57.146 39.130 0.00 0.00 0.00 3.85
592 597 5.359860 TGAAAGCTATCCTCATGTTAGACGA 59.640 40.000 0.00 0.00 0.00 4.20
593 598 5.592054 TGAAAGCTATCCTCATGTTAGACG 58.408 41.667 0.00 0.00 0.00 4.18
594 599 7.475771 CTTGAAAGCTATCCTCATGTTAGAC 57.524 40.000 0.00 0.00 0.00 2.59
726 2140 2.728435 ATAGACGGTGGAACGGGGC 61.728 63.158 0.00 0.00 42.06 5.80
752 2166 0.462581 TCGGTACATACGCGGAGAGT 60.463 55.000 12.47 7.88 46.42 3.24
853 2275 1.004918 CCGTTTTGGAGACGAGCCT 60.005 57.895 0.00 0.00 42.82 4.58
959 2453 0.685097 TCGAGGACCAAACAGGGAAG 59.315 55.000 0.00 0.00 43.89 3.46
1158 2661 2.440796 ATGATGCCTTGGCCGTGG 60.441 61.111 9.35 9.27 0.00 4.94
1191 2694 1.667236 CGGTTGAGCAATGCTGGATA 58.333 50.000 14.48 0.00 39.88 2.59
1284 3122 2.502080 GACTCGTGCCACTCGTCG 60.502 66.667 0.00 0.00 0.00 5.12
1332 3170 1.226717 CTTCTCGTAGCACTCCCGC 60.227 63.158 0.00 0.00 0.00 6.13
1373 3211 1.733041 TCGTCGCCTTGAAGCTTCG 60.733 57.895 21.11 9.92 0.00 3.79
1419 3257 1.202072 CTCGGACTCGACGATAGCG 59.798 63.158 0.00 0.00 40.88 4.26
1422 3260 0.249784 CCTCCTCGGACTCGACGATA 60.250 60.000 0.00 0.00 40.88 2.92
1505 3396 1.016130 CACCTGCTCCACGATGTGTC 61.016 60.000 0.00 0.00 0.00 3.67
1506 3397 1.004560 CACCTGCTCCACGATGTGT 60.005 57.895 0.00 0.00 0.00 3.72
1553 3444 1.669115 CACAACGGCTCCCACTCTG 60.669 63.158 0.00 0.00 0.00 3.35
1643 3534 0.460987 GATCTTGCTCTCCACGGTGG 60.461 60.000 21.27 21.27 39.43 4.61
2025 3920 2.254546 ACCGACTTGATGAACTTGCA 57.745 45.000 0.00 0.00 0.00 4.08
2164 4059 2.092323 TCGATCCAGTCTTCACATCGT 58.908 47.619 0.00 0.00 38.02 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.