Multiple sequence alignment - TraesCS1A01G089300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G089300 chr1A 100.000 6902 0 0 1 6902 78542240 78549141 0.000000e+00 12746.0
1 TraesCS1A01G089300 chr1A 89.811 1482 116 14 4474 5955 78337973 78339419 0.000000e+00 1868.0
2 TraesCS1A01G089300 chr1A 91.403 1105 66 10 5020 6106 78955004 78956097 0.000000e+00 1487.0
3 TraesCS1A01G089300 chr1A 86.667 525 40 16 4505 5027 78953955 78954451 7.820000e-154 555.0
4 TraesCS1A01G089300 chr1A 89.867 375 31 3 523 896 78348727 78349095 6.260000e-130 475.0
5 TraesCS1A01G089300 chr1A 80.065 617 50 24 952 1515 78953300 78953896 2.330000e-104 390.0
6 TraesCS1A01G089300 chr1A 79.029 453 55 20 6468 6902 78339431 78339861 2.450000e-69 274.0
7 TraesCS1A01G089300 chr1A 85.792 183 26 0 4252 4434 78336203 78336385 1.960000e-45 195.0
8 TraesCS1A01G089300 chr1A 90.625 96 5 2 1130 1225 78335884 78335975 2.610000e-24 124.0
9 TraesCS1A01G089300 chr1A 82.031 128 23 0 4253 4380 468606412 468606285 7.320000e-20 110.0
10 TraesCS1A01G089300 chr1A 81.600 125 23 0 4251 4375 554221412 554221536 3.410000e-18 104.0
11 TraesCS1A01G089300 chr1B 91.307 1806 123 8 4441 6218 137174060 137175859 0.000000e+00 2435.0
12 TraesCS1A01G089300 chr1B 91.825 1211 71 14 5020 6215 137178974 137180171 0.000000e+00 1663.0
13 TraesCS1A01G089300 chr1B 90.370 1163 85 9 4954 6106 137153007 137154152 0.000000e+00 1502.0
14 TraesCS1A01G089300 chr1B 91.707 1025 61 11 5055 6072 137447068 137448075 0.000000e+00 1400.0
15 TraesCS1A01G089300 chr1B 94.308 896 47 4 1606 2500 42312653 42311761 0.000000e+00 1369.0
16 TraesCS1A01G089300 chr1B 95.455 506 23 0 2596 3101 42311750 42311245 0.000000e+00 808.0
17 TraesCS1A01G089300 chr1B 89.982 569 26 10 975 1533 137173344 137173891 0.000000e+00 706.0
18 TraesCS1A01G089300 chr1B 85.169 681 62 22 4251 4922 137152274 137152924 0.000000e+00 662.0
19 TraesCS1A01G089300 chr1B 93.488 430 27 1 523 951 137172933 137173362 7.550000e-179 638.0
20 TraesCS1A01G089300 chr1B 86.989 538 33 18 4505 5027 137445960 137446475 7.770000e-159 571.0
21 TraesCS1A01G089300 chr1B 84.068 590 46 17 954 1515 137445275 137445844 6.130000e-145 525.0
22 TraesCS1A01G089300 chr1B 84.258 559 49 13 972 1515 137177356 137177890 6.180000e-140 508.0
23 TraesCS1A01G089300 chr1B 81.714 525 62 20 6400 6901 137448389 137448902 2.320000e-109 407.0
24 TraesCS1A01G089300 chr1B 81.436 404 65 10 3136 3534 106789399 106789797 8.640000e-84 322.0
25 TraesCS1A01G089300 chr1B 87.705 244 20 7 980 1221 137151808 137152043 6.820000e-70 276.0
26 TraesCS1A01G089300 chr1B 84.058 207 18 5 6313 6517 137180204 137180397 1.180000e-42 185.0
27 TraesCS1A01G089300 chr1B 93.939 66 2 1 6221 6284 85441642 85441707 1.580000e-16 99.0
28 TraesCS1A01G089300 chr1B 93.750 64 2 2 6221 6282 597156870 597156807 2.050000e-15 95.3
29 TraesCS1A01G089300 chr1B 97.297 37 1 0 6550 6586 137180404 137180440 5.780000e-06 63.9
30 TraesCS1A01G089300 chr1B 100.000 28 0 0 4927 4954 137152942 137152969 1.300000e-02 52.8
31 TraesCS1A01G089300 chr1D 90.492 1809 131 19 4441 6218 84611506 84613304 0.000000e+00 2350.0
32 TraesCS1A01G089300 chr1D 92.628 1058 64 7 5055 6106 84724655 84725704 0.000000e+00 1509.0
33 TraesCS1A01G089300 chr1D 89.867 1125 88 11 4941 6056 84569334 84570441 0.000000e+00 1423.0
34 TraesCS1A01G089300 chr1D 87.829 1101 106 8 3136 4214 315545739 315546833 0.000000e+00 1266.0
35 TraesCS1A01G089300 chr1D 87.100 1031 108 20 3136 4145 451066529 451067555 0.000000e+00 1144.0
36 TraesCS1A01G089300 chr1D 94.190 654 28 7 2491 3140 246078410 246077763 0.000000e+00 989.0
37 TraesCS1A01G089300 chr1D 87.961 623 68 5 1616 2236 11405720 11406337 0.000000e+00 728.0
38 TraesCS1A01G089300 chr1D 89.892 554 26 7 983 1506 84610750 84611303 0.000000e+00 686.0
39 TraesCS1A01G089300 chr1D 90.351 456 41 3 4441 4894 84566328 84566782 4.610000e-166 595.0
40 TraesCS1A01G089300 chr1D 87.732 538 29 14 4505 5027 84723532 84724047 1.660000e-165 593.0
41 TraesCS1A01G089300 chr1D 94.865 370 19 0 576 945 84610393 84610762 4.640000e-161 579.0
42 TraesCS1A01G089300 chr1D 91.406 384 30 1 523 903 84573515 84573898 2.210000e-144 523.0
43 TraesCS1A01G089300 chr1D 81.651 654 58 32 6283 6902 84613318 84613943 2.890000e-133 486.0
44 TraesCS1A01G089300 chr1D 92.145 331 24 1 4496 4826 84568830 84569158 3.770000e-127 466.0
45 TraesCS1A01G089300 chr1D 85.678 391 27 15 996 1372 84565726 84566101 1.090000e-102 385.0
46 TraesCS1A01G089300 chr1D 83.688 141 23 0 4251 4391 97132473 97132613 4.340000e-27 134.0
47 TraesCS1A01G089300 chr1D 92.424 66 3 2 6221 6284 402831657 402831592 7.370000e-15 93.5
48 TraesCS1A01G089300 chr1D 80.159 126 21 3 4267 4390 268939127 268939004 2.650000e-14 91.6
49 TraesCS1A01G089300 chr2B 92.610 1529 104 6 1610 3136 615574608 615576129 0.000000e+00 2189.0
50 TraesCS1A01G089300 chr2B 87.522 1114 102 19 3136 4214 109075253 109076364 0.000000e+00 1253.0
51 TraesCS1A01G089300 chr2B 96.161 521 19 1 4 523 636178196 636177676 0.000000e+00 850.0
52 TraesCS1A01G089300 chr2B 95.810 525 21 1 1 524 163419419 163419943 0.000000e+00 846.0
53 TraesCS1A01G089300 chr2B 95.455 66 1 1 6221 6284 247368556 247368621 3.410000e-18 104.0
54 TraesCS1A01G089300 chr2B 86.747 83 4 5 1529 1606 34089031 34089111 1.230000e-12 86.1
55 TraesCS1A01G089300 chr2B 85.556 90 3 7 1530 1609 109160124 109160213 1.230000e-12 86.1
56 TraesCS1A01G089300 chr4A 93.450 1481 86 9 1606 3080 525108244 525109719 0.000000e+00 2187.0
57 TraesCS1A01G089300 chr4A 97.688 519 12 0 2 520 712652201 712651683 0.000000e+00 893.0
58 TraesCS1A01G089300 chr4A 89.935 616 58 3 2491 3106 177786226 177785615 0.000000e+00 791.0
59 TraesCS1A01G089300 chr5A 91.380 1543 95 14 1610 3145 476663135 476661624 0.000000e+00 2078.0
60 TraesCS1A01G089300 chr5A 86.298 1102 116 22 3137 4223 601242523 601243604 0.000000e+00 1166.0
61 TraesCS1A01G089300 chr5A 86.063 1105 110 26 3136 4214 412911243 412912329 0.000000e+00 1147.0
62 TraesCS1A01G089300 chr5A 86.273 1049 116 21 3136 4162 703412516 703411474 0.000000e+00 1114.0
63 TraesCS1A01G089300 chr3A 90.353 1472 92 19 1617 3087 662511957 662510535 0.000000e+00 1886.0
64 TraesCS1A01G089300 chr3A 93.630 832 50 3 2278 3106 598669723 598670554 0.000000e+00 1240.0
65 TraesCS1A01G089300 chr3A 91.599 369 19 4 1909 2277 598669077 598669433 3.720000e-137 499.0
66 TraesCS1A01G089300 chr3A 89.216 306 31 1 1609 1914 598634894 598635197 1.400000e-101 381.0
67 TraesCS1A01G089300 chr3A 85.393 89 8 3 1267 1350 726305570 726305658 3.430000e-13 87.9
68 TraesCS1A01G089300 chr3D 88.645 1092 100 11 3136 4214 365333945 365332865 0.000000e+00 1308.0
69 TraesCS1A01G089300 chr2A 89.176 1007 84 12 3140 4123 71110512 71111516 0.000000e+00 1232.0
70 TraesCS1A01G089300 chr2A 93.846 65 3 1 6221 6284 182008985 182009049 5.700000e-16 97.1
71 TraesCS1A01G089300 chr6B 90.745 886 73 8 1600 2480 698143137 698142256 0.000000e+00 1173.0
72 TraesCS1A01G089300 chr6B 78.365 208 37 6 2936 3139 120349613 120349816 2.020000e-25 128.0
73 TraesCS1A01G089300 chr5B 85.355 1113 142 10 3136 4235 58429581 58430685 0.000000e+00 1133.0
74 TraesCS1A01G089300 chr5B 85.027 1122 125 25 3136 4223 254504966 254506078 0.000000e+00 1101.0
75 TraesCS1A01G089300 chr5B 95.992 524 21 0 1 524 392111175 392111698 0.000000e+00 852.0
76 TraesCS1A01G089300 chr5B 95.962 520 21 0 1 520 6914366 6913847 0.000000e+00 845.0
77 TraesCS1A01G089300 chr5B 84.127 126 19 1 4251 4375 230883387 230883512 3.380000e-23 121.0
78 TraesCS1A01G089300 chr7D 90.887 823 67 7 1662 2480 52422817 52423635 0.000000e+00 1098.0
79 TraesCS1A01G089300 chr7D 78.344 157 27 6 2246 2398 361035400 361035553 2.050000e-15 95.3
80 TraesCS1A01G089300 chr7D 78.125 160 24 10 2246 2399 178949208 178949054 2.650000e-14 91.6
81 TraesCS1A01G089300 chr7D 85.882 85 4 5 1531 1608 621140534 621140451 4.440000e-12 84.2
82 TraesCS1A01G089300 chr7D 85.057 87 3 3 1531 1607 464242584 464242670 5.740000e-11 80.5
83 TraesCS1A01G089300 chr2D 90.650 738 54 11 3136 3860 72370096 72370831 0.000000e+00 966.0
84 TraesCS1A01G089300 chr2D 89.566 738 54 12 3136 3860 72650605 72651332 0.000000e+00 915.0
85 TraesCS1A01G089300 chr2D 89.295 738 64 11 3136 3860 72626941 72627676 0.000000e+00 911.0
86 TraesCS1A01G089300 chr2D 92.424 66 3 2 6221 6284 74975976 74975911 7.370000e-15 93.5
87 TraesCS1A01G089300 chr2D 79.412 136 22 6 2246 2378 180524422 180524290 2.650000e-14 91.6
88 TraesCS1A01G089300 chr4B 97.333 525 13 1 1 524 68661136 68661660 0.000000e+00 891.0
89 TraesCS1A01G089300 chr4B 84.444 90 1 8 1531 1607 291896592 291896503 7.420000e-10 76.8
90 TraesCS1A01G089300 chr7B 97.318 522 14 0 1 522 703724875 703725396 0.000000e+00 887.0
91 TraesCS1A01G089300 chr7B 97.137 524 14 1 1 523 63023909 63023386 0.000000e+00 883.0
92 TraesCS1A01G089300 chr7B 96.176 523 20 0 1 523 690198220 690198742 0.000000e+00 856.0
93 TraesCS1A01G089300 chr7B 89.286 84 7 2 1525 1606 174043984 174044067 3.410000e-18 104.0
94 TraesCS1A01G089300 chr5D 90.455 440 15 14 2491 2928 494213092 494212678 7.820000e-154 555.0
95 TraesCS1A01G089300 chr5D 86.831 243 14 10 2898 3139 494212665 494212440 8.880000e-64 255.0
96 TraesCS1A01G089300 chr5D 83.803 142 21 2 4251 4391 61714069 61713929 4.340000e-27 134.0
97 TraesCS1A01G089300 chr5D 92.857 70 3 2 6221 6288 456063680 456063611 4.400000e-17 100.0
98 TraesCS1A01G089300 chr5D 92.424 66 3 2 6225 6288 9120379 9120314 7.370000e-15 93.5
99 TraesCS1A01G089300 chr5D 86.905 84 4 4 1531 1607 445728257 445728174 3.430000e-13 87.9
100 TraesCS1A01G089300 chr7A 83.493 521 36 21 4742 5247 583787780 583787295 2.290000e-119 440.0
101 TraesCS1A01G089300 chr7A 85.882 85 3 8 1531 1607 716229116 716229199 1.600000e-11 82.4
102 TraesCS1A01G089300 chr4D 81.047 401 70 6 3138 3535 14475855 14476252 1.450000e-81 315.0
103 TraesCS1A01G089300 chr4D 78.509 228 44 4 2914 3140 418434629 418434406 2.010000e-30 145.0
104 TraesCS1A01G089300 chr4D 81.250 128 20 4 4268 4391 500828462 500828589 4.400000e-17 100.0
105 TraesCS1A01G089300 chr6D 78.589 397 52 20 2638 3010 235545326 235545713 1.500000e-56 231.0
106 TraesCS1A01G089300 chr6D 91.429 70 4 2 6221 6288 343295739 343295808 2.050000e-15 95.3
107 TraesCS1A01G089300 chr6A 83.505 97 5 3 1521 1607 29330629 29330724 5.740000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G089300 chr1A 78542240 78549141 6901 False 12746.000000 12746 100.000000 1 6902 1 chr1A.!!$F2 6901
1 TraesCS1A01G089300 chr1A 78953300 78956097 2797 False 810.666667 1487 86.045000 952 6106 3 chr1A.!!$F5 5154
2 TraesCS1A01G089300 chr1A 78335884 78339861 3977 False 615.250000 1868 86.314250 1130 6902 4 chr1A.!!$F4 5772
3 TraesCS1A01G089300 chr1B 42311245 42312653 1408 True 1088.500000 1369 94.881500 1606 3101 2 chr1B.!!$R2 1495
4 TraesCS1A01G089300 chr1B 137172933 137180440 7507 False 885.557143 2435 90.316429 523 6586 7 chr1B.!!$F4 6063
5 TraesCS1A01G089300 chr1B 137445275 137448902 3627 False 725.750000 1400 86.119500 954 6901 4 chr1B.!!$F5 5947
6 TraesCS1A01G089300 chr1B 137151808 137154152 2344 False 623.200000 1502 90.811000 980 6106 4 chr1B.!!$F3 5126
7 TraesCS1A01G089300 chr1D 315545739 315546833 1094 False 1266.000000 1266 87.829000 3136 4214 1 chr1D.!!$F3 1078
8 TraesCS1A01G089300 chr1D 451066529 451067555 1026 False 1144.000000 1144 87.100000 3136 4145 1 chr1D.!!$F4 1009
9 TraesCS1A01G089300 chr1D 84723532 84725704 2172 False 1051.000000 1509 90.180000 4505 6106 2 chr1D.!!$F7 1601
10 TraesCS1A01G089300 chr1D 84610393 84613943 3550 False 1025.250000 2350 89.225000 576 6902 4 chr1D.!!$F6 6326
11 TraesCS1A01G089300 chr1D 246077763 246078410 647 True 989.000000 989 94.190000 2491 3140 1 chr1D.!!$R1 649
12 TraesCS1A01G089300 chr1D 11405720 11406337 617 False 728.000000 728 87.961000 1616 2236 1 chr1D.!!$F1 620
13 TraesCS1A01G089300 chr1D 84565726 84573898 8172 False 678.400000 1423 89.889400 523 6056 5 chr1D.!!$F5 5533
14 TraesCS1A01G089300 chr2B 615574608 615576129 1521 False 2189.000000 2189 92.610000 1610 3136 1 chr2B.!!$F6 1526
15 TraesCS1A01G089300 chr2B 109075253 109076364 1111 False 1253.000000 1253 87.522000 3136 4214 1 chr2B.!!$F2 1078
16 TraesCS1A01G089300 chr2B 636177676 636178196 520 True 850.000000 850 96.161000 4 523 1 chr2B.!!$R1 519
17 TraesCS1A01G089300 chr2B 163419419 163419943 524 False 846.000000 846 95.810000 1 524 1 chr2B.!!$F4 523
18 TraesCS1A01G089300 chr4A 525108244 525109719 1475 False 2187.000000 2187 93.450000 1606 3080 1 chr4A.!!$F1 1474
19 TraesCS1A01G089300 chr4A 712651683 712652201 518 True 893.000000 893 97.688000 2 520 1 chr4A.!!$R2 518
20 TraesCS1A01G089300 chr4A 177785615 177786226 611 True 791.000000 791 89.935000 2491 3106 1 chr4A.!!$R1 615
21 TraesCS1A01G089300 chr5A 476661624 476663135 1511 True 2078.000000 2078 91.380000 1610 3145 1 chr5A.!!$R1 1535
22 TraesCS1A01G089300 chr5A 601242523 601243604 1081 False 1166.000000 1166 86.298000 3137 4223 1 chr5A.!!$F2 1086
23 TraesCS1A01G089300 chr5A 412911243 412912329 1086 False 1147.000000 1147 86.063000 3136 4214 1 chr5A.!!$F1 1078
24 TraesCS1A01G089300 chr5A 703411474 703412516 1042 True 1114.000000 1114 86.273000 3136 4162 1 chr5A.!!$R2 1026
25 TraesCS1A01G089300 chr3A 662510535 662511957 1422 True 1886.000000 1886 90.353000 1617 3087 1 chr3A.!!$R1 1470
26 TraesCS1A01G089300 chr3A 598669077 598670554 1477 False 869.500000 1240 92.614500 1909 3106 2 chr3A.!!$F3 1197
27 TraesCS1A01G089300 chr3D 365332865 365333945 1080 True 1308.000000 1308 88.645000 3136 4214 1 chr3D.!!$R1 1078
28 TraesCS1A01G089300 chr2A 71110512 71111516 1004 False 1232.000000 1232 89.176000 3140 4123 1 chr2A.!!$F1 983
29 TraesCS1A01G089300 chr6B 698142256 698143137 881 True 1173.000000 1173 90.745000 1600 2480 1 chr6B.!!$R1 880
30 TraesCS1A01G089300 chr5B 58429581 58430685 1104 False 1133.000000 1133 85.355000 3136 4235 1 chr5B.!!$F1 1099
31 TraesCS1A01G089300 chr5B 254504966 254506078 1112 False 1101.000000 1101 85.027000 3136 4223 1 chr5B.!!$F3 1087
32 TraesCS1A01G089300 chr5B 392111175 392111698 523 False 852.000000 852 95.992000 1 524 1 chr5B.!!$F4 523
33 TraesCS1A01G089300 chr5B 6913847 6914366 519 True 845.000000 845 95.962000 1 520 1 chr5B.!!$R1 519
34 TraesCS1A01G089300 chr7D 52422817 52423635 818 False 1098.000000 1098 90.887000 1662 2480 1 chr7D.!!$F1 818
35 TraesCS1A01G089300 chr2D 72370096 72370831 735 False 966.000000 966 90.650000 3136 3860 1 chr2D.!!$F1 724
36 TraesCS1A01G089300 chr2D 72650605 72651332 727 False 915.000000 915 89.566000 3136 3860 1 chr2D.!!$F3 724
37 TraesCS1A01G089300 chr2D 72626941 72627676 735 False 911.000000 911 89.295000 3136 3860 1 chr2D.!!$F2 724
38 TraesCS1A01G089300 chr4B 68661136 68661660 524 False 891.000000 891 97.333000 1 524 1 chr4B.!!$F1 523
39 TraesCS1A01G089300 chr7B 703724875 703725396 521 False 887.000000 887 97.318000 1 522 1 chr7B.!!$F3 521
40 TraesCS1A01G089300 chr7B 63023386 63023909 523 True 883.000000 883 97.137000 1 523 1 chr7B.!!$R1 522
41 TraesCS1A01G089300 chr7B 690198220 690198742 522 False 856.000000 856 96.176000 1 523 1 chr7B.!!$F2 522
42 TraesCS1A01G089300 chr5D 494212440 494213092 652 True 405.000000 555 88.643000 2491 3139 2 chr5D.!!$R5 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
866 869 0.725117 GTTAACTGAACCCATCGGCG 59.275 55.0 0.00 0.00 38.03 6.46 F
1488 1644 0.319405 GCAAAGGCAGCCACTTTCAT 59.681 50.0 15.80 0.00 40.72 2.57 F
2948 3488 0.390860 GAGGGCAGAGTACGATGCAT 59.609 55.0 21.72 0.00 44.37 3.96 F
3299 3847 0.040204 GCCCCAGCCAAGCCATATAT 59.960 55.0 0.00 0.00 0.00 0.86 F
4247 4865 0.033405 TAGGAGGGACGAAGGGTCTG 60.033 60.0 0.00 0.00 45.35 3.51 F
4636 10755 0.237498 GGTTCCGGCTCAAAAACTCG 59.763 55.0 0.00 0.00 0.00 4.18 F
5683 14976 0.038159 AGTGAGTGGTGCGCTAACTC 60.038 55.0 22.57 22.57 30.51 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2628 3124 0.671163 TTGCTACGACCGGCGAAATT 60.671 50.000 22.10 5.11 44.57 1.82 R
3237 3783 0.461339 ACGTGCGAAGTCTGTTTGGT 60.461 50.000 0.00 0.00 0.00 3.67 R
4247 4865 0.109913 AACTGGGAACGGAGGGAAAC 59.890 55.000 0.00 0.00 41.09 2.78 R
4618 10737 0.237498 CCGAGTTTTTGAGCCGGAAC 59.763 55.000 5.05 0.00 42.49 3.62 R
5683 14976 0.833834 AGGACTCCACTGTCACCTGG 60.834 60.000 0.00 0.00 38.61 4.45 R
5863 15156 2.092429 ACCAAGTGACCTTCAGAAGCAA 60.092 45.455 4.41 0.00 0.00 3.91 R
6693 16361 0.682209 ATGCTGTTCATCCAGTGGGC 60.682 55.000 9.92 3.16 34.84 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.258591 GCTGTCCTCACTTCGCGA 59.741 61.111 3.71 3.71 0.00 5.87
432 433 7.255625 GCTCTTTCTCTGTTATTTCTTTTGGGT 60.256 37.037 0.00 0.00 0.00 4.51
531 533 6.309389 ACCCTTTTTCGGTAATGATCTACT 57.691 37.500 0.00 0.00 0.00 2.57
539 541 7.392494 TTCGGTAATGATCTACTAGCTATGG 57.608 40.000 0.00 0.00 0.00 2.74
540 542 5.886474 TCGGTAATGATCTACTAGCTATGGG 59.114 44.000 0.00 0.00 0.00 4.00
543 545 6.893005 GGTAATGATCTACTAGCTATGGGAGT 59.107 42.308 0.00 0.00 0.00 3.85
554 556 8.356000 ACTAGCTATGGGAGTGTAGAATTATC 57.644 38.462 0.00 0.00 0.00 1.75
558 560 2.969950 TGGGAGTGTAGAATTATCGGGG 59.030 50.000 0.00 0.00 0.00 5.73
566 568 8.030913 AGTGTAGAATTATCGGGGAAAAGTAT 57.969 34.615 0.00 0.00 0.00 2.12
571 573 8.622948 AGAATTATCGGGGAAAAGTATGAATC 57.377 34.615 0.00 0.00 0.00 2.52
574 576 2.158871 TCGGGGAAAAGTATGAATCGGG 60.159 50.000 0.00 0.00 0.00 5.14
581 583 6.463897 GGGAAAAGTATGAATCGGGTCAGATA 60.464 42.308 0.00 0.00 0.00 1.98
595 597 6.951778 TCGGGTCAGATATGAGTATAATTGGA 59.048 38.462 0.00 0.00 0.00 3.53
634 636 7.910584 TGTATGTATTGTCTATGAGCCATGAT 58.089 34.615 0.00 0.00 0.00 2.45
636 638 5.554070 TGTATTGTCTATGAGCCATGATGG 58.446 41.667 7.21 7.21 41.55 3.51
674 676 4.038402 CCAGAAATGCATAATGGTCTTCCC 59.962 45.833 13.89 0.00 0.00 3.97
860 863 4.101898 TCAAGCTACAGTTAACTGAACCCA 59.898 41.667 36.14 16.88 46.59 4.51
864 867 3.053831 ACAGTTAACTGAACCCATCGG 57.946 47.619 36.14 11.06 46.59 4.18
866 869 0.725117 GTTAACTGAACCCATCGGCG 59.275 55.000 0.00 0.00 38.03 6.46
881 884 1.274167 TCGGCGGTGTTAACTGAAGAT 59.726 47.619 7.21 0.00 34.25 2.40
899 902 7.361457 TGAAGATATACCTTCAGTAACCTGG 57.639 40.000 5.35 0.00 45.25 4.45
1075 1121 1.475682 ACCACGAAGAGTATCGGTTCC 59.524 52.381 1.59 0.00 46.82 3.62
1149 1195 4.585879 AGCAGGGTTGTTTCATATACGTT 58.414 39.130 0.00 0.00 0.00 3.99
1330 1416 0.548510 CACTCAAATCCCCTCCCCTC 59.451 60.000 0.00 0.00 0.00 4.30
1352 1438 2.819608 GCAACAGAACAAGCCCTTATCA 59.180 45.455 0.00 0.00 0.00 2.15
1400 1553 5.163353 TGTCTAGTTCATGAACACCAGTCAA 60.163 40.000 33.92 16.73 43.47 3.18
1414 1567 4.564372 CACCAGTCAATCAGTATCACTTCG 59.436 45.833 0.00 0.00 0.00 3.79
1418 1571 5.003872 CAGTCAATCAGTATCACTTCGTTCG 59.996 44.000 0.00 0.00 0.00 3.95
1455 1611 6.756221 TGAAGGTTACTTTCACTTCCTACTC 58.244 40.000 5.80 0.00 38.78 2.59
1465 1621 8.311836 ACTTTCACTTCCTACTCGATTTATTCA 58.688 33.333 0.00 0.00 0.00 2.57
1477 1633 4.699735 TCGATTTATTCAGAAGCAAAGGCA 59.300 37.500 0.00 0.00 44.61 4.75
1488 1644 0.319405 GCAAAGGCAGCCACTTTCAT 59.681 50.000 15.80 0.00 40.72 2.57
1521 1711 0.759959 TTAGGCTCGGTTTGGACACA 59.240 50.000 0.00 0.00 0.00 3.72
1529 1719 2.957680 TCGGTTTGGACACACACTACTA 59.042 45.455 0.00 0.00 0.00 1.82
1532 1722 4.753107 CGGTTTGGACACACACTACTATTT 59.247 41.667 0.00 0.00 0.00 1.40
1533 1723 5.237779 CGGTTTGGACACACACTACTATTTT 59.762 40.000 0.00 0.00 0.00 1.82
1554 1744 3.428413 TTTAAAGAAGGAAGACCCCGG 57.572 47.619 0.00 0.00 36.73 5.73
1555 1745 0.616891 TAAAGAAGGAAGACCCCGGC 59.383 55.000 0.00 0.00 36.73 6.13
1556 1746 2.138453 AAAGAAGGAAGACCCCGGCC 62.138 60.000 0.00 0.00 36.73 6.13
1557 1747 3.009714 GAAGGAAGACCCCGGCCT 61.010 66.667 0.00 0.00 36.73 5.19
1558 1748 3.009714 AAGGAAGACCCCGGCCTC 61.010 66.667 0.00 0.00 36.73 4.70
1559 1749 3.564347 AAGGAAGACCCCGGCCTCT 62.564 63.158 0.00 0.00 36.73 3.69
1560 1750 3.787001 GGAAGACCCCGGCCTCTG 61.787 72.222 0.00 0.00 0.00 3.35
1561 1751 4.475135 GAAGACCCCGGCCTCTGC 62.475 72.222 0.00 0.00 0.00 4.26
1564 1754 4.554036 GACCCCGGCCTCTGCATC 62.554 72.222 0.00 0.00 40.13 3.91
1568 1758 4.923942 CCGGCCTCTGCATCGCAT 62.924 66.667 0.00 0.00 38.13 4.73
1569 1759 3.646976 CGGCCTCTGCATCGCATG 61.647 66.667 0.00 0.00 38.13 4.06
1578 1768 3.193757 CATCGCATGCAGCCACTT 58.806 55.556 19.57 0.00 41.38 3.16
1579 1769 1.509463 CATCGCATGCAGCCACTTT 59.491 52.632 19.57 0.00 41.38 2.66
1580 1770 0.734309 CATCGCATGCAGCCACTTTA 59.266 50.000 19.57 0.00 41.38 1.85
1581 1771 1.335810 CATCGCATGCAGCCACTTTAT 59.664 47.619 19.57 0.00 41.38 1.40
1582 1772 1.462616 TCGCATGCAGCCACTTTATT 58.537 45.000 19.57 0.00 41.38 1.40
1583 1773 2.637947 TCGCATGCAGCCACTTTATTA 58.362 42.857 19.57 0.00 41.38 0.98
1584 1774 3.013219 TCGCATGCAGCCACTTTATTAA 58.987 40.909 19.57 0.00 41.38 1.40
1585 1775 3.631686 TCGCATGCAGCCACTTTATTAAT 59.368 39.130 19.57 0.00 41.38 1.40
1586 1776 4.097741 TCGCATGCAGCCACTTTATTAATT 59.902 37.500 19.57 0.00 41.38 1.40
1587 1777 5.298026 TCGCATGCAGCCACTTTATTAATTA 59.702 36.000 19.57 0.00 41.38 1.40
1588 1778 6.016360 TCGCATGCAGCCACTTTATTAATTAT 60.016 34.615 19.57 0.00 41.38 1.28
1589 1779 6.642131 CGCATGCAGCCACTTTATTAATTATT 59.358 34.615 19.57 0.00 41.38 1.40
1590 1780 7.148918 CGCATGCAGCCACTTTATTAATTATTC 60.149 37.037 19.57 0.00 41.38 1.75
1591 1781 7.652909 GCATGCAGCCACTTTATTAATTATTCA 59.347 33.333 14.21 0.00 37.23 2.57
1592 1782 8.971321 CATGCAGCCACTTTATTAATTATTCAC 58.029 33.333 0.00 0.00 0.00 3.18
1593 1783 8.060931 TGCAGCCACTTTATTAATTATTCACA 57.939 30.769 0.00 0.00 0.00 3.58
1594 1784 8.526978 TGCAGCCACTTTATTAATTATTCACAA 58.473 29.630 0.00 0.00 0.00 3.33
1595 1785 9.364989 GCAGCCACTTTATTAATTATTCACAAA 57.635 29.630 0.00 0.00 0.00 2.83
1614 1804 4.592778 ACAAAGACCTTACAAAATGGGCAT 59.407 37.500 0.00 0.00 0.00 4.40
1622 1812 1.340991 ACAAAATGGGCATCGCTAGGT 60.341 47.619 0.00 0.00 0.00 3.08
1668 1859 2.832201 GGTCCTACCGTAGCCGCT 60.832 66.667 0.00 0.00 0.00 5.52
1711 1902 3.118445 GCTAGATCCTTATCCATCCAGGC 60.118 52.174 0.00 0.00 37.29 4.85
1746 1938 2.445438 GCTCGCGAGAAAAGGACCG 61.445 63.158 38.74 10.41 41.32 4.79
1791 1983 1.675310 CTTCAGTGGCCATCCGCAA 60.675 57.895 9.72 0.00 45.27 4.85
1963 2155 2.104331 CGTAGCTTCGGTGGCGAT 59.896 61.111 4.63 0.00 34.52 4.58
2206 2399 2.094675 GCATGTAGCATGAAACCCACT 58.905 47.619 12.67 0.00 44.79 4.00
2222 2415 0.824109 CACTACTTCCATCCTCGCCA 59.176 55.000 0.00 0.00 0.00 5.69
2281 2763 9.691362 TTTTTCAACTACAAATGAAGCTTATCC 57.309 29.630 0.00 0.00 36.93 2.59
2449 2940 3.686726 GCTTCATCCATGTTCTCGAAAGT 59.313 43.478 0.00 0.00 0.00 2.66
2529 3021 3.825308 CTGATTGTAGCACAAACGCAAT 58.175 40.909 5.94 0.00 41.96 3.56
2585 3081 0.515564 AAAAACATCTTCGTCGCCGG 59.484 50.000 0.00 0.00 33.95 6.13
2628 3124 4.222366 TGGCATGAATGGATGTAGCAAAAA 59.778 37.500 0.00 0.00 0.00 1.94
2948 3488 0.390860 GAGGGCAGAGTACGATGCAT 59.609 55.000 21.72 0.00 44.37 3.96
2955 3495 4.550422 GCAGAGTACGATGCATCAGATAA 58.450 43.478 25.70 3.64 42.11 1.75
2992 3533 0.758734 CAATCGTGATGGGCCTAGGA 59.241 55.000 14.75 2.96 0.00 2.94
3080 3622 1.081108 GATCCCTTCGCGATCGAGG 60.081 63.158 21.57 16.81 46.34 4.63
3237 3783 0.672342 GCCGATAGTCCGAGCCTAAA 59.328 55.000 0.00 0.00 0.00 1.85
3238 3784 1.602416 GCCGATAGTCCGAGCCTAAAC 60.602 57.143 0.00 0.00 0.00 2.01
3248 3796 2.550208 CCGAGCCTAAACCAAACAGACT 60.550 50.000 0.00 0.00 0.00 3.24
3299 3847 0.040204 GCCCCAGCCAAGCCATATAT 59.960 55.000 0.00 0.00 0.00 0.86
3403 3952 2.046023 CGCCATGACCTTGCCAGA 60.046 61.111 0.00 0.00 0.00 3.86
3534 4098 0.687354 AGATGAAACACCGCTCCACT 59.313 50.000 0.00 0.00 0.00 4.00
3544 4108 3.259876 ACACCGCTCCACTAAAGATGTTA 59.740 43.478 0.00 0.00 0.00 2.41
3613 4177 1.005394 GGGGAAACGACGCAAGAGA 60.005 57.895 0.00 0.00 43.62 3.10
3625 4189 1.023513 GCAAGAGAGCCGCTGTCATT 61.024 55.000 18.93 8.05 0.00 2.57
3829 4399 2.838225 CCGCCATCTCTACCGGGT 60.838 66.667 6.32 4.46 37.21 5.28
3830 4400 2.432300 CCGCCATCTCTACCGGGTT 61.432 63.158 4.31 0.00 37.21 4.11
3834 4404 1.776662 CCATCTCTACCGGGTTCTGA 58.223 55.000 4.31 1.37 0.00 3.27
3854 4424 0.621571 AAGTAGGATCCAGGCTGCCA 60.622 55.000 22.65 0.00 0.00 4.92
3936 4509 2.427245 CCACCGGAGAGCCCTACAG 61.427 68.421 9.46 0.00 0.00 2.74
3972 4547 2.752238 CAGGAGAGGACGACGCCT 60.752 66.667 10.07 10.07 42.17 5.52
4055 4643 1.275291 CCACTAGAAGAAAGCGTCCCA 59.725 52.381 0.00 0.00 0.00 4.37
4131 4720 2.030562 CTTTGCCCGACGACCTGT 59.969 61.111 0.00 0.00 0.00 4.00
4132 4721 2.280524 TTTGCCCGACGACCTGTG 60.281 61.111 0.00 0.00 0.00 3.66
4133 4722 4.980805 TTGCCCGACGACCTGTGC 62.981 66.667 0.00 0.00 0.00 4.57
4216 4834 2.022240 GACGGCATGAGGAGAGGGAC 62.022 65.000 0.00 0.00 0.00 4.46
4230 4848 0.324460 AGGGACGAGGGGTCTGTTAG 60.324 60.000 0.00 0.00 45.35 2.34
4235 4853 1.043673 CGAGGGGTCTGTTAGGAGGG 61.044 65.000 0.00 0.00 0.00 4.30
4236 4854 0.338814 GAGGGGTCTGTTAGGAGGGA 59.661 60.000 0.00 0.00 0.00 4.20
4237 4855 0.042881 AGGGGTCTGTTAGGAGGGAC 59.957 60.000 0.00 0.00 0.00 4.46
4238 4856 1.328430 GGGGTCTGTTAGGAGGGACG 61.328 65.000 0.00 0.00 0.00 4.79
4239 4857 0.324091 GGGTCTGTTAGGAGGGACGA 60.324 60.000 0.00 0.00 0.00 4.20
4240 4858 1.553706 GGTCTGTTAGGAGGGACGAA 58.446 55.000 0.00 0.00 0.00 3.85
4241 4859 1.477295 GGTCTGTTAGGAGGGACGAAG 59.523 57.143 0.00 0.00 0.00 3.79
4242 4860 1.477295 GTCTGTTAGGAGGGACGAAGG 59.523 57.143 0.00 0.00 0.00 3.46
4243 4861 0.824759 CTGTTAGGAGGGACGAAGGG 59.175 60.000 0.00 0.00 0.00 3.95
4244 4862 0.115745 TGTTAGGAGGGACGAAGGGT 59.884 55.000 0.00 0.00 0.00 4.34
4245 4863 0.822811 GTTAGGAGGGACGAAGGGTC 59.177 60.000 0.00 0.00 45.31 4.46
4246 4864 0.708802 TTAGGAGGGACGAAGGGTCT 59.291 55.000 0.00 0.00 45.35 3.85
4247 4865 0.033405 TAGGAGGGACGAAGGGTCTG 60.033 60.000 0.00 0.00 45.35 3.51
4248 4866 1.609794 GGAGGGACGAAGGGTCTGT 60.610 63.158 0.00 0.00 45.35 3.41
4249 4867 1.192803 GGAGGGACGAAGGGTCTGTT 61.193 60.000 0.00 0.00 45.35 3.16
4264 4882 0.321653 CTGTTTCCCTCCGTTCCCAG 60.322 60.000 0.00 0.00 0.00 4.45
4310 4928 6.901081 TCTGAATCGGATGTATGTAGATGT 57.099 37.500 0.00 0.00 0.00 3.06
4311 4929 7.996098 TCTGAATCGGATGTATGTAGATGTA 57.004 36.000 0.00 0.00 0.00 2.29
4342 4970 6.806120 GTGTTTGTTCACACATTTTAGTCC 57.194 37.500 0.00 0.00 45.57 3.85
4343 4971 5.746721 GTGTTTGTTCACACATTTTAGTCCC 59.253 40.000 0.00 0.00 45.57 4.46
4356 4984 5.587388 TTTTAGTCCCTATGTAGTCCGTG 57.413 43.478 0.00 0.00 0.00 4.94
4366 4994 7.506599 TCCCTATGTAGTCCGTGTTGAAATATA 59.493 37.037 0.00 0.00 0.00 0.86
4414 5048 9.419297 ACAAATGTGGTAGTATATTACTATGCG 57.581 33.333 5.50 0.00 42.68 4.73
4434 5068 2.709213 GAAAGATGAGAGCACAGCCTT 58.291 47.619 0.00 0.00 0.00 4.35
4435 5069 2.875094 AAGATGAGAGCACAGCCTTT 57.125 45.000 0.00 0.00 0.00 3.11
4436 5070 2.875094 AGATGAGAGCACAGCCTTTT 57.125 45.000 0.00 0.00 0.00 2.27
4437 5071 3.151912 AGATGAGAGCACAGCCTTTTT 57.848 42.857 0.00 0.00 0.00 1.94
4458 5092 5.963176 TTTTTGCATAAGATGAGAGCACA 57.037 34.783 0.00 0.00 34.56 4.57
4459 5093 5.963176 TTTTGCATAAGATGAGAGCACAA 57.037 34.783 0.00 0.00 34.56 3.33
4460 5094 4.952262 TTGCATAAGATGAGAGCACAAC 57.048 40.909 0.00 0.00 34.56 3.32
4461 5095 3.273434 TGCATAAGATGAGAGCACAACC 58.727 45.455 0.00 0.00 0.00 3.77
4462 5096 3.054875 TGCATAAGATGAGAGCACAACCT 60.055 43.478 0.00 0.00 0.00 3.50
4463 5097 4.162131 TGCATAAGATGAGAGCACAACCTA 59.838 41.667 0.00 0.00 0.00 3.08
4464 5098 5.163269 TGCATAAGATGAGAGCACAACCTAT 60.163 40.000 0.00 0.00 0.00 2.57
4483 5118 4.096382 CCTATCTGGTTCGGTTTTCAATGG 59.904 45.833 0.00 0.00 0.00 3.16
4506 10625 5.286438 GTTCTGTTCCAACCAATTTACACC 58.714 41.667 0.00 0.00 0.00 4.16
4511 10630 5.299782 TGTTCCAACCAATTTACACCTACAC 59.700 40.000 0.00 0.00 0.00 2.90
4519 10638 7.228590 ACCAATTTACACCTACACACATACTT 58.771 34.615 0.00 0.00 0.00 2.24
4520 10639 7.174253 ACCAATTTACACCTACACACATACTTG 59.826 37.037 0.00 0.00 0.00 3.16
4522 10641 7.900782 ATTTACACCTACACACATACTTGTC 57.099 36.000 0.00 0.00 32.34 3.18
4530 10649 6.367969 CCTACACACATACTTGTCTTGTTACC 59.632 42.308 0.00 0.00 33.30 2.85
4545 10664 7.040478 TGTCTTGTTACCCTCTTTGATTGATTG 60.040 37.037 0.00 0.00 0.00 2.67
4552 10671 6.131264 ACCCTCTTTGATTGATTGATATGCA 58.869 36.000 0.00 0.00 0.00 3.96
4618 10737 5.325239 ACTGGTAAAATCTTCAAAGAGGGG 58.675 41.667 0.00 0.00 38.66 4.79
4636 10755 0.237498 GGTTCCGGCTCAAAAACTCG 59.763 55.000 0.00 0.00 0.00 4.18
4648 10767 4.667262 TCAAAAACTCGGTCAATGTTGTG 58.333 39.130 0.00 0.00 0.00 3.33
4669 10788 4.156739 GTGTCCATCAAGATTGTTTCCTCC 59.843 45.833 0.00 0.00 0.00 4.30
4721 10840 1.492176 CCATCATAGCCAGGGACAGTT 59.508 52.381 0.00 0.00 0.00 3.16
4824 10943 4.038042 TGCCTCATAGCTACAGACACATAC 59.962 45.833 0.00 0.00 0.00 2.39
4831 10950 8.914011 TCATAGCTACAGACACATACTACAATT 58.086 33.333 0.00 0.00 0.00 2.32
5227 14518 7.739295 TCGTCATTCAGAACATAGCTAAAAAC 58.261 34.615 0.00 0.00 0.00 2.43
5235 14526 3.004862 ACATAGCTAAAAACGAACCCCG 58.995 45.455 0.00 0.00 45.44 5.73
5260 14552 5.522641 AGCAAGGGTAATTCAATCAATCCT 58.477 37.500 0.00 0.00 0.00 3.24
5262 14554 6.547510 AGCAAGGGTAATTCAATCAATCCTAC 59.452 38.462 0.00 0.00 0.00 3.18
5316 14608 5.114764 TGGTCTTGCAGGATGATTCATTA 57.885 39.130 0.30 0.00 39.69 1.90
5349 14641 3.285484 CCCAAAGAGAGGATTCATGGTG 58.715 50.000 0.00 0.00 0.00 4.17
5434 14726 7.667635 TCGATGATGATAGACTCAGTAAAGGAT 59.332 37.037 0.00 0.00 37.28 3.24
5683 14976 0.038159 AGTGAGTGGTGCGCTAACTC 60.038 55.000 22.57 22.57 30.51 3.01
5768 15061 1.016627 GTGTTGACTGTTGCTGCTGA 58.983 50.000 0.00 0.00 0.00 4.26
5844 15137 7.254898 CGCAATGGTTACAATGATGAGAGTATT 60.255 37.037 0.00 0.00 28.65 1.89
5863 15156 0.251922 TACCTGCGGGGACTACAAGT 60.252 55.000 18.00 0.00 38.76 3.16
6023 15345 4.552166 AACAATATATGTGTTCCAGCGC 57.448 40.909 0.00 0.00 42.99 5.92
6056 15418 6.368805 TCTATTCTGACTCTTCTGGCTGATA 58.631 40.000 0.00 0.00 0.00 2.15
6109 15471 7.611467 TGGTACATGCATGAAATTTAAGACTCT 59.389 33.333 32.75 7.76 0.00 3.24
6131 15602 6.263344 TCTTGTAGTATTCACGTCAGCATAC 58.737 40.000 0.00 0.00 0.00 2.39
6218 15690 2.844122 ACAAAGTTGTTCGCCTTGTC 57.156 45.000 0.00 0.00 38.47 3.18
6219 15691 2.365582 ACAAAGTTGTTCGCCTTGTCT 58.634 42.857 0.00 0.00 38.47 3.41
6221 15693 4.134563 ACAAAGTTGTTCGCCTTGTCTAT 58.865 39.130 0.00 0.00 38.47 1.98
6222 15694 5.302360 ACAAAGTTGTTCGCCTTGTCTATA 58.698 37.500 0.00 0.00 38.47 1.31
6225 15697 7.604927 ACAAAGTTGTTCGCCTTGTCTATATAA 59.395 33.333 0.00 0.00 38.47 0.98
6226 15698 7.772332 AAGTTGTTCGCCTTGTCTATATAAG 57.228 36.000 0.00 0.00 0.00 1.73
6260 15732 5.694674 TCAAATTGAACTGCAAAAACGTC 57.305 34.783 0.00 0.00 40.48 4.34
6261 15733 5.406649 TCAAATTGAACTGCAAAAACGTCT 58.593 33.333 0.00 0.00 40.48 4.18
6262 15734 5.866633 TCAAATTGAACTGCAAAAACGTCTT 59.133 32.000 0.00 0.00 40.48 3.01
6263 15735 7.030165 TCAAATTGAACTGCAAAAACGTCTTA 58.970 30.769 0.00 0.00 40.48 2.10
6264 15736 7.704472 TCAAATTGAACTGCAAAAACGTCTTAT 59.296 29.630 0.00 0.00 40.48 1.73
6265 15737 8.963130 CAAATTGAACTGCAAAAACGTCTTATA 58.037 29.630 0.00 0.00 40.48 0.98
6266 15738 9.691362 AAATTGAACTGCAAAAACGTCTTATAT 57.309 25.926 0.00 0.00 40.48 0.86
6267 15739 9.691362 AATTGAACTGCAAAAACGTCTTATATT 57.309 25.926 0.00 0.00 40.48 1.28
6268 15740 9.691362 ATTGAACTGCAAAAACGTCTTATATTT 57.309 25.926 0.00 0.00 40.48 1.40
6269 15741 9.522804 TTGAACTGCAAAAACGTCTTATATTTT 57.477 25.926 0.00 0.00 32.46 1.82
6270 15742 8.963130 TGAACTGCAAAAACGTCTTATATTTTG 58.037 29.630 13.82 13.82 42.66 2.44
6271 15743 7.867445 ACTGCAAAAACGTCTTATATTTTGG 57.133 32.000 17.78 8.43 41.02 3.28
6272 15744 7.430441 ACTGCAAAAACGTCTTATATTTTGGT 58.570 30.769 17.78 8.90 41.02 3.67
6273 15745 8.569641 ACTGCAAAAACGTCTTATATTTTGGTA 58.430 29.630 17.78 0.00 41.02 3.25
6274 15746 8.730970 TGCAAAAACGTCTTATATTTTGGTAC 57.269 30.769 17.78 6.55 41.02 3.34
6275 15747 8.350722 TGCAAAAACGTCTTATATTTTGGTACA 58.649 29.630 17.78 8.43 41.02 2.90
6276 15748 8.846607 GCAAAAACGTCTTATATTTTGGTACAG 58.153 33.333 17.78 0.00 42.39 2.74
6279 15751 8.488651 AAACGTCTTATATTTTGGTACAGAGG 57.511 34.615 0.00 0.00 42.39 3.69
6280 15752 7.179076 ACGTCTTATATTTTGGTACAGAGGT 57.821 36.000 0.00 0.00 42.39 3.85
6281 15753 8.297470 ACGTCTTATATTTTGGTACAGAGGTA 57.703 34.615 0.00 0.00 42.39 3.08
6282 15754 8.411683 ACGTCTTATATTTTGGTACAGAGGTAG 58.588 37.037 0.00 0.00 42.39 3.18
6283 15755 8.411683 CGTCTTATATTTTGGTACAGAGGTAGT 58.588 37.037 0.00 0.00 42.39 2.73
6284 15756 9.530633 GTCTTATATTTTGGTACAGAGGTAGTG 57.469 37.037 0.00 0.00 42.39 2.74
6285 15757 8.701895 TCTTATATTTTGGTACAGAGGTAGTGG 58.298 37.037 0.00 0.00 42.39 4.00
6286 15758 6.886178 ATATTTTGGTACAGAGGTAGTGGT 57.114 37.500 0.00 0.00 42.39 4.16
6287 15759 7.983166 ATATTTTGGTACAGAGGTAGTGGTA 57.017 36.000 0.00 0.00 42.39 3.25
6288 15760 6.691255 ATTTTGGTACAGAGGTAGTGGTAA 57.309 37.500 0.00 0.00 42.39 2.85
6289 15761 6.497624 TTTTGGTACAGAGGTAGTGGTAAA 57.502 37.500 0.00 0.00 42.39 2.01
6290 15762 5.473066 TTGGTACAGAGGTAGTGGTAAAC 57.527 43.478 0.00 0.00 42.39 2.01
6291 15763 4.482030 TGGTACAGAGGTAGTGGTAAACA 58.518 43.478 0.00 0.00 0.00 2.83
6292 15764 4.525487 TGGTACAGAGGTAGTGGTAAACAG 59.475 45.833 0.00 0.00 0.00 3.16
6293 15765 4.525874 GGTACAGAGGTAGTGGTAAACAGT 59.474 45.833 0.00 0.00 36.50 3.55
6377 15896 6.732531 TGCAAGTTCAATGTCTATGAAGAG 57.267 37.500 0.00 0.00 37.46 2.85
6379 15898 6.712095 TGCAAGTTCAATGTCTATGAAGAGTT 59.288 34.615 0.00 0.00 37.46 3.01
6380 15899 7.020010 GCAAGTTCAATGTCTATGAAGAGTTG 58.980 38.462 0.00 0.00 37.46 3.16
6384 15903 8.370940 AGTTCAATGTCTATGAAGAGTTGAAGA 58.629 33.333 12.51 0.00 42.40 2.87
6386 15905 7.901029 TCAATGTCTATGAAGAGTTGAAGACT 58.099 34.615 0.00 0.00 42.70 3.24
6387 15906 9.025041 TCAATGTCTATGAAGAGTTGAAGACTA 57.975 33.333 0.00 0.00 39.19 2.59
6388 15907 9.814899 CAATGTCTATGAAGAGTTGAAGACTAT 57.185 33.333 0.00 0.00 39.19 2.12
6391 15910 8.613482 TGTCTATGAAGAGTTGAAGACTATACG 58.387 37.037 0.00 0.00 39.19 3.06
6393 15912 7.991460 TCTATGAAGAGTTGAAGACTATACGGA 59.009 37.037 0.00 0.00 39.19 4.69
6394 15913 6.192234 TGAAGAGTTGAAGACTATACGGAC 57.808 41.667 0.00 0.00 39.19 4.79
6395 15914 4.879104 AGAGTTGAAGACTATACGGACG 57.121 45.455 0.00 0.00 39.19 4.79
6396 15915 3.065095 AGAGTTGAAGACTATACGGACGC 59.935 47.826 0.00 0.00 39.19 5.19
6398 15917 3.192001 AGTTGAAGACTATACGGACGCAA 59.808 43.478 0.00 0.00 36.65 4.85
6403 15922 4.485024 AGACTATACGGACGCAATGTAG 57.515 45.455 0.00 0.00 0.00 2.74
6409 16059 8.722480 ACTATACGGACGCAATGTAGTATATA 57.278 34.615 0.00 0.00 36.75 0.86
6463 16118 8.697507 ATTTTTGGTTAGAATCAAGACTCAGT 57.302 30.769 0.00 0.00 29.47 3.41
6464 16119 9.793259 ATTTTTGGTTAGAATCAAGACTCAGTA 57.207 29.630 0.00 0.00 29.47 2.74
6466 16121 9.621629 TTTTGGTTAGAATCAAGACTCAGTAAA 57.378 29.630 0.00 0.00 29.47 2.01
6535 16199 6.176896 TGTGCATTATTGTGCTAAGGAAGTA 58.823 36.000 0.00 0.00 45.27 2.24
6666 16334 4.102367 TGCCACTACTACATCCAATATGCA 59.898 41.667 0.00 0.00 0.00 3.96
6671 16339 2.782925 ACTACATCCAATATGCACCCCA 59.217 45.455 0.00 0.00 0.00 4.96
6672 16340 2.071778 ACATCCAATATGCACCCCAC 57.928 50.000 0.00 0.00 0.00 4.61
6673 16341 1.331214 CATCCAATATGCACCCCACC 58.669 55.000 0.00 0.00 0.00 4.61
6674 16342 0.188342 ATCCAATATGCACCCCACCC 59.812 55.000 0.00 0.00 0.00 4.61
6675 16343 1.457455 CCAATATGCACCCCACCCC 60.457 63.158 0.00 0.00 0.00 4.95
6676 16344 1.620259 CAATATGCACCCCACCCCT 59.380 57.895 0.00 0.00 0.00 4.79
6677 16345 0.032217 CAATATGCACCCCACCCCTT 60.032 55.000 0.00 0.00 0.00 3.95
6679 16347 1.994885 ATATGCACCCCACCCCTTCG 61.995 60.000 0.00 0.00 0.00 3.79
6681 16349 4.410400 GCACCCCACCCCTTCGAG 62.410 72.222 0.00 0.00 0.00 4.04
6682 16350 2.606519 CACCCCACCCCTTCGAGA 60.607 66.667 0.00 0.00 0.00 4.04
6683 16351 2.284699 ACCCCACCCCTTCGAGAG 60.285 66.667 0.00 0.00 0.00 3.20
6684 16352 3.787001 CCCCACCCCTTCGAGAGC 61.787 72.222 0.00 0.00 0.00 4.09
6685 16353 4.148825 CCCACCCCTTCGAGAGCG 62.149 72.222 0.00 0.00 39.35 5.03
6687 16355 4.821589 CACCCCTTCGAGAGCGCC 62.822 72.222 2.29 0.00 37.46 6.53
6690 16358 4.082523 CCCTTCGAGAGCGCCCAA 62.083 66.667 2.29 0.00 37.46 4.12
6691 16359 2.815647 CCTTCGAGAGCGCCCAAC 60.816 66.667 2.29 0.00 37.46 3.77
6693 16361 4.735132 TTCGAGAGCGCCCAACCG 62.735 66.667 2.29 0.82 37.46 4.44
6709 16392 1.746615 CCGCCCACTGGATGAACAG 60.747 63.158 0.00 0.00 44.03 3.16
6737 16420 3.508762 CAGTGATTGCAAAGCCTGATTC 58.491 45.455 1.71 0.00 34.07 2.52
6739 16422 3.767673 AGTGATTGCAAAGCCTGATTCAT 59.232 39.130 1.71 0.00 0.00 2.57
6745 16428 5.155278 TGCAAAGCCTGATTCATCATTTT 57.845 34.783 0.00 0.00 36.02 1.82
6746 16429 5.172934 TGCAAAGCCTGATTCATCATTTTC 58.827 37.500 0.00 0.00 36.02 2.29
6757 16442 8.283699 TGATTCATCATTTTCTTCATGCACTA 57.716 30.769 0.00 0.00 0.00 2.74
6763 16448 7.218228 TCATTTTCTTCATGCACTACACATT 57.782 32.000 0.00 0.00 0.00 2.71
6842 16528 8.995027 TGGTTTTATATATGGTTTCATCTGCT 57.005 30.769 0.00 0.00 34.96 4.24
6844 16530 8.850156 GGTTTTATATATGGTTTCATCTGCTGT 58.150 33.333 0.00 0.00 34.96 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
432 433 1.595109 CGGAAGCAGCACAGTCACA 60.595 57.895 0.00 0.00 0.00 3.58
531 533 6.377429 CCGATAATTCTACACTCCCATAGCTA 59.623 42.308 0.00 0.00 0.00 3.32
539 541 4.950205 TTCCCCGATAATTCTACACTCC 57.050 45.455 0.00 0.00 0.00 3.85
540 542 6.346896 ACTTTTCCCCGATAATTCTACACTC 58.653 40.000 0.00 0.00 0.00 3.51
543 545 8.025270 TCATACTTTTCCCCGATAATTCTACA 57.975 34.615 0.00 0.00 0.00 2.74
554 556 2.218603 CCCGATTCATACTTTTCCCCG 58.781 52.381 0.00 0.00 0.00 5.73
558 560 7.872993 TCATATCTGACCCGATTCATACTTTTC 59.127 37.037 0.00 0.00 0.00 2.29
566 568 8.595362 ATTATACTCATATCTGACCCGATTCA 57.405 34.615 0.00 0.00 0.00 2.57
571 573 7.122799 TCTCCAATTATACTCATATCTGACCCG 59.877 40.741 0.00 0.00 0.00 5.28
574 576 8.526978 TGCTCTCCAATTATACTCATATCTGAC 58.473 37.037 0.00 0.00 0.00 3.51
581 583 8.153550 CCTTACTTGCTCTCCAATTATACTCAT 58.846 37.037 0.00 0.00 31.91 2.90
595 597 7.796054 ACAATACATACATCCTTACTTGCTCT 58.204 34.615 0.00 0.00 0.00 4.09
634 636 4.794311 TCTGGATTCATTCCTATTGCCA 57.206 40.909 0.00 0.00 45.68 4.92
636 638 5.924825 GCATTTCTGGATTCATTCCTATTGC 59.075 40.000 0.00 0.00 45.68 3.56
638 640 7.850935 ATGCATTTCTGGATTCATTCCTATT 57.149 32.000 0.00 0.00 45.68 1.73
819 822 2.417651 TTGACCTACAATACCGCTTCGG 60.418 50.000 3.42 3.42 42.36 4.30
860 863 1.274167 TCTTCAGTTAACACCGCCGAT 59.726 47.619 8.61 0.00 0.00 4.18
864 867 5.598769 AGGTATATCTTCAGTTAACACCGC 58.401 41.667 8.61 0.00 0.00 5.68
891 894 2.820037 GCGAGGCTGCCAGGTTAC 60.820 66.667 22.65 3.93 0.00 2.50
1038 1084 2.525629 TCCCACTTCCTCACCGCA 60.526 61.111 0.00 0.00 0.00 5.69
1039 1085 2.047179 GTCCCACTTCCTCACCGC 60.047 66.667 0.00 0.00 0.00 5.68
1042 1088 1.004918 CGTGGTCCCACTTCCTCAC 60.005 63.158 14.20 0.00 44.16 3.51
1043 1089 0.761323 TTCGTGGTCCCACTTCCTCA 60.761 55.000 14.20 0.00 44.16 3.86
1045 1091 0.471211 TCTTCGTGGTCCCACTTCCT 60.471 55.000 14.20 0.00 44.16 3.36
1075 1121 2.356818 GAATCCTCCTCCGGCGTCTG 62.357 65.000 6.01 0.00 0.00 3.51
1149 1195 1.136147 GCCGTCGAAGAAGTAGCGA 59.864 57.895 0.00 0.00 39.69 4.93
1330 1416 1.234821 TAAGGGCTTGTTCTGTTGCG 58.765 50.000 0.00 0.00 0.00 4.85
1352 1438 3.119495 GCATAACGAAGGCAACAAGGATT 60.119 43.478 0.00 0.00 41.41 3.01
1400 1553 4.696899 TGACGAACGAAGTGATACTGAT 57.303 40.909 0.14 0.00 45.00 2.90
1414 1567 6.002062 ACCTTCAGATTGATTTTGACGAAC 57.998 37.500 0.00 0.00 0.00 3.95
1418 1571 9.399403 GAAAGTAACCTTCAGATTGATTTTGAC 57.601 33.333 0.00 0.00 0.00 3.18
1455 1611 4.985413 TGCCTTTGCTTCTGAATAAATCG 58.015 39.130 0.00 0.00 38.71 3.34
1465 1621 0.468771 AAGTGGCTGCCTTTGCTTCT 60.469 50.000 21.03 4.18 38.71 2.85
1488 1644 8.514330 AACCGAGCCTAATTGACAAATAAATA 57.486 30.769 0.00 0.00 0.00 1.40
1532 1722 4.146564 CCGGGGTCTTCCTTCTTTAAAAA 58.853 43.478 0.00 0.00 35.33 1.94
1533 1723 3.758425 CCGGGGTCTTCCTTCTTTAAAA 58.242 45.455 0.00 0.00 35.33 1.52
1536 1726 0.616891 GCCGGGGTCTTCCTTCTTTA 59.383 55.000 2.18 0.00 35.33 1.85
1537 1727 1.379146 GCCGGGGTCTTCCTTCTTT 59.621 57.895 2.18 0.00 35.33 2.52
1538 1728 2.603652 GGCCGGGGTCTTCCTTCTT 61.604 63.158 2.18 0.00 35.33 2.52
1540 1730 3.009714 AGGCCGGGGTCTTCCTTC 61.010 66.667 2.18 0.00 35.33 3.46
1542 1732 4.012721 AGAGGCCGGGGTCTTCCT 62.013 66.667 2.18 0.00 35.33 3.36
1543 1733 3.787001 CAGAGGCCGGGGTCTTCC 61.787 72.222 2.18 0.00 0.00 3.46
1544 1734 4.475135 GCAGAGGCCGGGGTCTTC 62.475 72.222 2.18 0.00 0.00 2.87
1547 1737 4.554036 GATGCAGAGGCCGGGGTC 62.554 72.222 2.18 0.00 40.13 4.46
1551 1741 4.923942 ATGCGATGCAGAGGCCGG 62.924 66.667 0.00 0.00 43.65 6.13
1552 1742 3.646976 CATGCGATGCAGAGGCCG 61.647 66.667 0.00 0.00 43.65 6.13
1561 1751 0.734309 TAAAGTGGCTGCATGCGATG 59.266 50.000 14.09 7.00 44.05 3.84
1562 1752 1.683943 ATAAAGTGGCTGCATGCGAT 58.316 45.000 14.09 0.00 44.05 4.58
1563 1753 1.462616 AATAAAGTGGCTGCATGCGA 58.537 45.000 14.09 1.21 44.05 5.10
1564 1754 3.419264 TTAATAAAGTGGCTGCATGCG 57.581 42.857 14.09 9.16 44.05 4.73
1565 1755 7.652909 TGAATAATTAATAAAGTGGCTGCATGC 59.347 33.333 11.82 11.82 41.94 4.06
1566 1756 8.971321 GTGAATAATTAATAAAGTGGCTGCATG 58.029 33.333 0.50 0.00 0.00 4.06
1567 1757 8.694540 TGTGAATAATTAATAAAGTGGCTGCAT 58.305 29.630 0.50 0.00 0.00 3.96
1568 1758 8.060931 TGTGAATAATTAATAAAGTGGCTGCA 57.939 30.769 0.50 0.00 0.00 4.41
1569 1759 8.925161 TTGTGAATAATTAATAAAGTGGCTGC 57.075 30.769 0.00 0.00 0.00 5.25
1584 1774 9.927668 CCATTTTGTAAGGTCTTTGTGAATAAT 57.072 29.630 0.00 0.00 0.00 1.28
1585 1775 8.364142 CCCATTTTGTAAGGTCTTTGTGAATAA 58.636 33.333 0.00 0.00 0.00 1.40
1586 1776 7.524698 GCCCATTTTGTAAGGTCTTTGTGAATA 60.525 37.037 0.00 0.00 0.00 1.75
1587 1777 6.741240 GCCCATTTTGTAAGGTCTTTGTGAAT 60.741 38.462 0.00 0.00 0.00 2.57
1588 1778 5.452636 GCCCATTTTGTAAGGTCTTTGTGAA 60.453 40.000 0.00 0.00 0.00 3.18
1589 1779 4.038642 GCCCATTTTGTAAGGTCTTTGTGA 59.961 41.667 0.00 0.00 0.00 3.58
1590 1780 4.202202 TGCCCATTTTGTAAGGTCTTTGTG 60.202 41.667 0.00 0.00 0.00 3.33
1591 1781 3.964031 TGCCCATTTTGTAAGGTCTTTGT 59.036 39.130 0.00 0.00 0.00 2.83
1592 1782 4.599047 TGCCCATTTTGTAAGGTCTTTG 57.401 40.909 0.00 0.00 0.00 2.77
1593 1783 4.082245 CGATGCCCATTTTGTAAGGTCTTT 60.082 41.667 0.00 0.00 0.00 2.52
1594 1784 3.443681 CGATGCCCATTTTGTAAGGTCTT 59.556 43.478 0.00 0.00 0.00 3.01
1595 1785 3.016736 CGATGCCCATTTTGTAAGGTCT 58.983 45.455 0.00 0.00 0.00 3.85
1596 1786 2.479560 GCGATGCCCATTTTGTAAGGTC 60.480 50.000 0.00 0.00 0.00 3.85
1597 1787 1.476488 GCGATGCCCATTTTGTAAGGT 59.524 47.619 0.00 0.00 0.00 3.50
1598 1788 1.750778 AGCGATGCCCATTTTGTAAGG 59.249 47.619 0.00 0.00 0.00 2.69
1605 1795 1.103398 GCACCTAGCGATGCCCATTT 61.103 55.000 0.00 0.00 35.73 2.32
1606 1796 1.526917 GCACCTAGCGATGCCCATT 60.527 57.895 0.00 0.00 35.73 3.16
1650 1841 3.142838 GCGGCTACGGTAGGACCA 61.143 66.667 16.43 0.00 38.47 4.02
1668 1859 4.789173 TTGGGAGGGGCCGATCGA 62.789 66.667 18.66 0.00 37.63 3.59
1711 1902 1.140652 GAGCCTGAGGGAAGAAGATGG 59.859 57.143 0.00 0.00 33.58 3.51
1746 1938 1.596477 GGGCTGATGAGATGCGGAC 60.596 63.158 0.00 0.00 0.00 4.79
1775 1967 2.359850 GTTGCGGATGGCCACTGA 60.360 61.111 8.16 0.00 42.61 3.41
1791 1983 2.521224 GAGGGTAGGGATCGGCGT 60.521 66.667 6.85 0.00 0.00 5.68
2074 2266 1.598701 GGCCGGAAGCAAAGCTGAAT 61.599 55.000 5.05 0.00 46.50 2.57
2075 2267 2.268076 GGCCGGAAGCAAAGCTGAA 61.268 57.895 5.05 0.00 46.50 3.02
2076 2268 2.672996 GGCCGGAAGCAAAGCTGA 60.673 61.111 5.05 0.00 46.50 4.26
2206 2399 2.238646 ACATTTGGCGAGGATGGAAGTA 59.761 45.455 0.00 0.00 0.00 2.24
2222 2415 3.498397 CACGAGTAGTCCAAGCAACATTT 59.502 43.478 0.00 0.00 0.00 2.32
2482 2973 6.318144 CCTCTCATTTTGCTACAATCATCTGT 59.682 38.462 0.00 0.00 0.00 3.41
2486 2978 5.067413 CAGCCTCTCATTTTGCTACAATCAT 59.933 40.000 0.00 0.00 31.69 2.45
2585 3081 3.134127 GATGCGACTGGGTTGGGC 61.134 66.667 0.00 0.00 0.00 5.36
2628 3124 0.671163 TTGCTACGACCGGCGAAATT 60.671 50.000 22.10 5.11 44.57 1.82
2629 3125 0.671163 TTTGCTACGACCGGCGAAAT 60.671 50.000 22.10 5.42 44.57 2.17
2631 3127 0.879400 TTTTTGCTACGACCGGCGAA 60.879 50.000 22.10 5.82 44.57 4.70
2879 3377 2.439507 TCAAGCTCCTTCTCCACAAACT 59.560 45.455 0.00 0.00 0.00 2.66
2955 3495 9.219603 TCACGATTGTTTATTTTTCTCTCATCT 57.780 29.630 0.00 0.00 0.00 2.90
3126 3668 9.723601 ATGTACTATTTTGTAAGGGAAACGTTA 57.276 29.630 0.00 0.00 39.53 3.18
3183 3729 4.270834 AGTGGATAGAAGTAGCGACAGAA 58.729 43.478 0.00 0.00 0.00 3.02
3237 3783 0.461339 ACGTGCGAAGTCTGTTTGGT 60.461 50.000 0.00 0.00 0.00 3.67
3238 3784 1.493772 TACGTGCGAAGTCTGTTTGG 58.506 50.000 0.00 0.00 0.00 3.28
3248 3796 2.094390 AGATGTTAGGCTTACGTGCGAA 60.094 45.455 2.64 0.00 0.00 4.70
3299 3847 1.192146 GGTGTGTGCCCTAGACCAGA 61.192 60.000 0.00 0.00 0.00 3.86
3353 3901 2.837591 TCTGAAGATGGATCGGTGGAAA 59.162 45.455 0.00 0.00 0.00 3.13
3427 3991 4.521062 ACTCGCGCAGGAGGATGC 62.521 66.667 15.41 0.00 42.95 3.91
3534 4098 3.181458 GGGACCAGCGGATAACATCTTTA 60.181 47.826 1.50 0.00 0.00 1.85
3544 4108 2.835431 CTCGAGGGACCAGCGGAT 60.835 66.667 3.91 0.00 0.00 4.18
3613 4177 1.032794 TAGATCGAATGACAGCGGCT 58.967 50.000 0.00 0.00 0.00 5.52
3655 4220 5.833340 AGTTCCAGACCTCTATCTGTTACT 58.167 41.667 2.35 2.62 43.99 2.24
3734 4299 1.445095 CTCGGCTAGATGCAAGGCT 59.555 57.895 8.60 1.14 45.15 4.58
3829 4399 3.198635 CAGCCTGGATCCTACTTTCAGAA 59.801 47.826 14.23 0.00 0.00 3.02
3830 4400 2.768527 CAGCCTGGATCCTACTTTCAGA 59.231 50.000 14.23 0.00 0.00 3.27
3834 4404 0.548510 GGCAGCCTGGATCCTACTTT 59.451 55.000 14.23 0.00 0.00 2.66
3972 4547 3.398310 TGGCTGCTGGGCATACGA 61.398 61.111 0.00 0.00 45.79 3.43
4160 4778 2.364842 AGCCCAGATCTGCCGACT 60.365 61.111 17.76 8.05 0.00 4.18
4162 4780 3.157252 GGAGCCCAGATCTGCCGA 61.157 66.667 17.76 0.00 0.00 5.54
4216 4834 1.043673 CCCTCCTAACAGACCCCTCG 61.044 65.000 0.00 0.00 0.00 4.63
4230 4848 1.192803 AACAGACCCTTCGTCCCTCC 61.193 60.000 0.00 0.00 43.08 4.30
4235 4853 3.228499 GGGAAACAGACCCTTCGTC 57.772 57.895 0.00 0.00 43.65 4.20
4242 4860 0.321387 GGAACGGAGGGAAACAGACC 60.321 60.000 0.00 0.00 0.00 3.85
4243 4861 0.321387 GGGAACGGAGGGAAACAGAC 60.321 60.000 0.00 0.00 0.00 3.51
4244 4862 0.765135 TGGGAACGGAGGGAAACAGA 60.765 55.000 0.00 0.00 0.00 3.41
4245 4863 0.321653 CTGGGAACGGAGGGAAACAG 60.322 60.000 0.00 0.00 39.98 3.16
4246 4864 1.057851 ACTGGGAACGGAGGGAAACA 61.058 55.000 0.00 0.00 41.09 2.83
4247 4865 0.109913 AACTGGGAACGGAGGGAAAC 59.890 55.000 0.00 0.00 41.09 2.78
4248 4866 1.732117 TAACTGGGAACGGAGGGAAA 58.268 50.000 0.00 0.00 41.09 3.13
4249 4867 1.961133 ATAACTGGGAACGGAGGGAA 58.039 50.000 0.00 0.00 41.09 3.97
4342 4970 9.537192 TTTATATTTCAACACGGACTACATAGG 57.463 33.333 0.00 0.00 0.00 2.57
4371 4999 7.598493 CCACATTTGTTCCGAATTAGAAAATGT 59.402 33.333 11.46 11.46 36.11 2.71
4393 5027 9.070179 TCTTTCGCATAGTAATATACTACCACA 57.930 33.333 0.00 0.00 43.46 4.17
4414 5048 2.399916 AGGCTGTGCTCTCATCTTTC 57.600 50.000 0.00 0.00 0.00 2.62
4436 5070 5.963176 TGTGCTCTCATCTTATGCAAAAA 57.037 34.783 0.00 0.00 35.34 1.94
4437 5071 5.335897 GGTTGTGCTCTCATCTTATGCAAAA 60.336 40.000 0.00 0.00 35.34 2.44
4438 5072 4.156556 GGTTGTGCTCTCATCTTATGCAAA 59.843 41.667 0.00 0.00 35.34 3.68
4439 5073 3.691118 GGTTGTGCTCTCATCTTATGCAA 59.309 43.478 0.00 0.00 35.34 4.08
4440 5074 3.054875 AGGTTGTGCTCTCATCTTATGCA 60.055 43.478 0.00 0.00 0.00 3.96
4441 5075 3.539604 AGGTTGTGCTCTCATCTTATGC 58.460 45.455 0.00 0.00 0.00 3.14
4442 5076 6.645827 CAGATAGGTTGTGCTCTCATCTTATG 59.354 42.308 0.00 0.00 0.00 1.90
4443 5077 6.239543 CCAGATAGGTTGTGCTCTCATCTTAT 60.240 42.308 0.00 0.00 0.00 1.73
4444 5078 5.069648 CCAGATAGGTTGTGCTCTCATCTTA 59.930 44.000 0.00 0.00 0.00 2.10
4445 5079 4.141756 CCAGATAGGTTGTGCTCTCATCTT 60.142 45.833 0.00 0.00 0.00 2.40
4446 5080 3.387374 CCAGATAGGTTGTGCTCTCATCT 59.613 47.826 0.00 0.00 0.00 2.90
4447 5081 3.726607 CCAGATAGGTTGTGCTCTCATC 58.273 50.000 0.00 0.00 0.00 2.92
4448 5082 3.834489 CCAGATAGGTTGTGCTCTCAT 57.166 47.619 0.00 0.00 0.00 2.90
4460 5094 4.096382 CCATTGAAAACCGAACCAGATAGG 59.904 45.833 0.00 0.00 45.67 2.57
4461 5095 4.700213 ACCATTGAAAACCGAACCAGATAG 59.300 41.667 0.00 0.00 0.00 2.08
4462 5096 4.658063 ACCATTGAAAACCGAACCAGATA 58.342 39.130 0.00 0.00 0.00 1.98
4463 5097 3.496331 ACCATTGAAAACCGAACCAGAT 58.504 40.909 0.00 0.00 0.00 2.90
4464 5098 2.938838 ACCATTGAAAACCGAACCAGA 58.061 42.857 0.00 0.00 0.00 3.86
4483 5118 5.068591 AGGTGTAAATTGGTTGGAACAGAAC 59.931 40.000 0.00 0.00 42.39 3.01
4506 10625 6.367969 GGGTAACAAGACAAGTATGTGTGTAG 59.632 42.308 0.00 0.00 38.15 2.74
4511 10630 5.794894 AGAGGGTAACAAGACAAGTATGTG 58.205 41.667 0.00 0.00 38.15 3.21
4519 10638 5.935945 TCAATCAAAGAGGGTAACAAGACA 58.064 37.500 0.00 0.00 39.74 3.41
4520 10639 7.174946 TCAATCAATCAAAGAGGGTAACAAGAC 59.825 37.037 0.00 0.00 39.74 3.01
4522 10641 7.452880 TCAATCAATCAAAGAGGGTAACAAG 57.547 36.000 0.00 0.00 39.74 3.16
4530 10649 9.542462 AAAATGCATATCAATCAATCAAAGAGG 57.458 29.630 0.00 0.00 0.00 3.69
4545 10664 9.234384 CTGTCAAATGAGAAGAAAATGCATATC 57.766 33.333 0.00 1.49 0.00 1.63
4552 10671 5.537674 AGGTGCTGTCAAATGAGAAGAAAAT 59.462 36.000 0.00 0.00 0.00 1.82
4618 10737 0.237498 CCGAGTTTTTGAGCCGGAAC 59.763 55.000 5.05 0.00 42.49 3.62
4636 10755 3.820467 TCTTGATGGACACAACATTGACC 59.180 43.478 0.00 0.33 0.00 4.02
4648 10767 3.375299 CGGAGGAAACAATCTTGATGGAC 59.625 47.826 0.00 0.00 0.00 4.02
4669 10788 1.399714 TGAGTGGGTAGCCATAGTCG 58.600 55.000 18.29 0.00 0.00 4.18
5227 14518 2.746277 CCCTTGCTTCGGGGTTCG 60.746 66.667 0.00 0.00 38.08 3.95
5235 14526 6.097412 AGGATTGATTGAATTACCCTTGCTTC 59.903 38.462 0.00 0.00 0.00 3.86
5260 14552 7.175104 AGATAAATTCCAGGAGCTTGTTTGTA 58.825 34.615 0.00 0.00 0.00 2.41
5262 14554 6.521151 AGATAAATTCCAGGAGCTTGTTTG 57.479 37.500 0.00 0.00 0.00 2.93
5316 14608 3.575687 CTCTCTTTGGGCCAGTCAAAATT 59.424 43.478 6.23 0.00 34.26 1.82
5349 14641 7.953393 TGATTTCGAAGAATATATCATCGCAC 58.047 34.615 0.00 3.59 46.07 5.34
5376 14668 1.271543 TGCACATCCTTCACCTTCAGG 60.272 52.381 0.00 0.00 42.17 3.86
5434 14726 3.667497 GATAGCATCCACCTCGATCAA 57.333 47.619 0.00 0.00 0.00 2.57
5546 14838 3.636231 TGCCCTCCACCGACCTTG 61.636 66.667 0.00 0.00 0.00 3.61
5683 14976 0.833834 AGGACTCCACTGTCACCTGG 60.834 60.000 0.00 0.00 38.61 4.45
5768 15061 5.536260 CAGATAACTCATCATCACCGACAT 58.464 41.667 0.00 0.00 35.96 3.06
5863 15156 2.092429 ACCAAGTGACCTTCAGAAGCAA 60.092 45.455 4.41 0.00 0.00 3.91
5978 15300 9.379791 GTTTTAGCATGTACTATAACTGGTTCT 57.620 33.333 0.00 0.00 33.72 3.01
6023 15345 9.605955 CAGAAGAGTCAGAATAGATACAATACG 57.394 37.037 0.00 0.00 0.00 3.06
6056 15418 6.712276 AGCAGTTCCAGTAAAACTAGCTTAT 58.288 36.000 0.00 0.00 37.59 1.73
6109 15471 6.127842 TGAGTATGCTGACGTGAATACTACAA 60.128 38.462 6.53 0.00 36.28 2.41
6131 15602 8.248945 TCTAATTTTACTCCGAGTAAACCTGAG 58.751 37.037 26.43 19.73 46.72 3.35
6156 15627 6.399639 TGTCAAAGTTTTGGGGATAGTTTC 57.600 37.500 4.89 0.00 38.66 2.78
6237 15709 5.866633 AGACGTTTTTGCAGTTCAATTTGAA 59.133 32.000 7.74 7.74 34.12 2.69
6238 15710 5.406649 AGACGTTTTTGCAGTTCAATTTGA 58.593 33.333 0.00 0.00 34.12 2.69
6239 15711 5.701029 AGACGTTTTTGCAGTTCAATTTG 57.299 34.783 0.00 0.00 34.12 2.32
6240 15712 9.691362 ATATAAGACGTTTTTGCAGTTCAATTT 57.309 25.926 0.00 0.00 34.12 1.82
6241 15713 9.691362 AATATAAGACGTTTTTGCAGTTCAATT 57.309 25.926 0.00 0.00 34.12 2.32
6242 15714 9.691362 AAATATAAGACGTTTTTGCAGTTCAAT 57.309 25.926 0.00 0.00 34.12 2.57
6243 15715 9.522804 AAAATATAAGACGTTTTTGCAGTTCAA 57.477 25.926 0.00 0.00 0.00 2.69
6244 15716 8.963130 CAAAATATAAGACGTTTTTGCAGTTCA 58.037 29.630 7.67 0.00 33.75 3.18
6245 15717 8.424731 CCAAAATATAAGACGTTTTTGCAGTTC 58.575 33.333 13.03 0.00 37.60 3.01
6246 15718 7.923878 ACCAAAATATAAGACGTTTTTGCAGTT 59.076 29.630 13.03 0.00 37.60 3.16
6247 15719 7.430441 ACCAAAATATAAGACGTTTTTGCAGT 58.570 30.769 13.03 6.29 37.60 4.40
6248 15720 7.867445 ACCAAAATATAAGACGTTTTTGCAG 57.133 32.000 13.03 5.81 37.60 4.41
6249 15721 8.350722 TGTACCAAAATATAAGACGTTTTTGCA 58.649 29.630 13.03 5.80 37.60 4.08
6250 15722 8.730970 TGTACCAAAATATAAGACGTTTTTGC 57.269 30.769 13.03 3.83 37.60 3.68
6253 15725 8.943002 CCTCTGTACCAAAATATAAGACGTTTT 58.057 33.333 0.00 0.00 0.00 2.43
6254 15726 8.098912 ACCTCTGTACCAAAATATAAGACGTTT 58.901 33.333 0.00 0.00 0.00 3.60
6255 15727 7.618137 ACCTCTGTACCAAAATATAAGACGTT 58.382 34.615 0.00 0.00 0.00 3.99
6256 15728 7.179076 ACCTCTGTACCAAAATATAAGACGT 57.821 36.000 0.00 0.00 0.00 4.34
6257 15729 8.411683 ACTACCTCTGTACCAAAATATAAGACG 58.588 37.037 0.00 0.00 0.00 4.18
6258 15730 9.530633 CACTACCTCTGTACCAAAATATAAGAC 57.469 37.037 0.00 0.00 0.00 3.01
6259 15731 8.701895 CCACTACCTCTGTACCAAAATATAAGA 58.298 37.037 0.00 0.00 0.00 2.10
6260 15732 8.483758 ACCACTACCTCTGTACCAAAATATAAG 58.516 37.037 0.00 0.00 0.00 1.73
6261 15733 8.383374 ACCACTACCTCTGTACCAAAATATAA 57.617 34.615 0.00 0.00 0.00 0.98
6262 15734 7.983166 ACCACTACCTCTGTACCAAAATATA 57.017 36.000 0.00 0.00 0.00 0.86
6263 15735 6.886178 ACCACTACCTCTGTACCAAAATAT 57.114 37.500 0.00 0.00 0.00 1.28
6264 15736 7.795534 TTACCACTACCTCTGTACCAAAATA 57.204 36.000 0.00 0.00 0.00 1.40
6265 15737 6.691255 TTACCACTACCTCTGTACCAAAAT 57.309 37.500 0.00 0.00 0.00 1.82
6266 15738 6.126825 TGTTTACCACTACCTCTGTACCAAAA 60.127 38.462 0.00 0.00 0.00 2.44
6267 15739 5.366186 TGTTTACCACTACCTCTGTACCAAA 59.634 40.000 0.00 0.00 0.00 3.28
6268 15740 4.900652 TGTTTACCACTACCTCTGTACCAA 59.099 41.667 0.00 0.00 0.00 3.67
6269 15741 4.482030 TGTTTACCACTACCTCTGTACCA 58.518 43.478 0.00 0.00 0.00 3.25
6270 15742 4.525874 ACTGTTTACCACTACCTCTGTACC 59.474 45.833 0.00 0.00 0.00 3.34
6271 15743 5.718724 ACTGTTTACCACTACCTCTGTAC 57.281 43.478 0.00 0.00 0.00 2.90
6272 15744 6.950041 ACATACTGTTTACCACTACCTCTGTA 59.050 38.462 0.00 0.00 0.00 2.74
6273 15745 5.778750 ACATACTGTTTACCACTACCTCTGT 59.221 40.000 0.00 0.00 0.00 3.41
6274 15746 6.282199 ACATACTGTTTACCACTACCTCTG 57.718 41.667 0.00 0.00 0.00 3.35
6275 15747 8.605325 AATACATACTGTTTACCACTACCTCT 57.395 34.615 0.00 0.00 0.00 3.69
6309 15781 9.010029 TCCAATTCTAACACAGGTCTTAAAATC 57.990 33.333 0.00 0.00 0.00 2.17
6311 15783 8.934023 ATCCAATTCTAACACAGGTCTTAAAA 57.066 30.769 0.00 0.00 0.00 1.52
6377 15896 3.141002 TGCGTCCGTATAGTCTTCAAC 57.859 47.619 0.00 0.00 0.00 3.18
6379 15898 3.129813 ACATTGCGTCCGTATAGTCTTCA 59.870 43.478 0.00 0.00 0.00 3.02
6380 15899 3.703420 ACATTGCGTCCGTATAGTCTTC 58.297 45.455 0.00 0.00 0.00 2.87
6384 15903 5.954296 ATACTACATTGCGTCCGTATAGT 57.046 39.130 0.00 0.00 0.00 2.12
6387 15906 8.900781 AGAATATATACTACATTGCGTCCGTAT 58.099 33.333 0.00 0.00 32.33 3.06
6388 15907 8.272545 AGAATATATACTACATTGCGTCCGTA 57.727 34.615 0.00 0.00 0.00 4.02
6389 15908 7.154435 AGAATATATACTACATTGCGTCCGT 57.846 36.000 0.00 0.00 0.00 4.69
6390 15909 8.396390 ACTAGAATATATACTACATTGCGTCCG 58.604 37.037 0.00 0.00 0.00 4.79
6391 15910 9.504710 CACTAGAATATATACTACATTGCGTCC 57.495 37.037 0.00 0.00 0.00 4.79
6393 15912 8.520351 TGCACTAGAATATATACTACATTGCGT 58.480 33.333 0.00 0.00 0.00 5.24
6394 15913 8.799091 GTGCACTAGAATATATACTACATTGCG 58.201 37.037 10.32 0.00 0.00 4.85
6395 15914 9.862371 AGTGCACTAGAATATATACTACATTGC 57.138 33.333 20.16 0.00 0.00 3.56
6458 16113 8.184192 TCAAAAGAACTGAAAGCTTTTACTGAG 58.816 33.333 14.05 7.26 39.16 3.35
6459 16114 8.050778 TCAAAAGAACTGAAAGCTTTTACTGA 57.949 30.769 14.05 4.09 39.16 3.41
6460 16115 8.862550 ATCAAAAGAACTGAAAGCTTTTACTG 57.137 30.769 14.05 8.06 39.16 2.74
6461 16116 9.952188 GTATCAAAAGAACTGAAAGCTTTTACT 57.048 29.630 14.05 6.02 39.16 2.24
6462 16117 9.952188 AGTATCAAAAGAACTGAAAGCTTTTAC 57.048 29.630 14.05 6.91 39.16 2.01
6464 16119 9.521503 GAAGTATCAAAAGAACTGAAAGCTTTT 57.478 29.630 14.05 0.00 41.14 2.27
6466 16121 7.503902 AGGAAGTATCAAAAGAACTGAAAGCTT 59.496 33.333 0.00 0.00 37.60 3.74
6535 16199 9.178758 GGTTTGGATTTGATACTATTCAGAACT 57.821 33.333 0.00 0.00 0.00 3.01
6609 16277 6.421405 GCATTCGAAAGTTGCAAAAATTCTT 58.579 32.000 15.51 0.00 39.74 2.52
6618 16286 2.483583 AAACGCATTCGAAAGTTGCA 57.516 40.000 19.17 0.00 39.88 4.08
6641 16309 2.665649 TTGGATGTAGTAGTGGCACG 57.334 50.000 12.71 0.00 0.00 5.34
6645 16313 4.997395 GGTGCATATTGGATGTAGTAGTGG 59.003 45.833 0.00 0.00 0.00 4.00
6651 16319 3.149196 GTGGGGTGCATATTGGATGTAG 58.851 50.000 0.00 0.00 0.00 2.74
6656 16324 1.618030 GGGTGGGGTGCATATTGGA 59.382 57.895 0.00 0.00 0.00 3.53
6666 16334 2.284699 CTCTCGAAGGGGTGGGGT 60.285 66.667 0.00 0.00 0.00 4.95
6673 16341 4.082523 TTGGGCGCTCTCGAAGGG 62.083 66.667 9.62 7.12 40.81 3.95
6674 16342 2.815647 GTTGGGCGCTCTCGAAGG 60.816 66.667 9.62 0.00 38.10 3.46
6675 16343 2.815647 GGTTGGGCGCTCTCGAAG 60.816 66.667 9.62 0.00 38.10 3.79
6676 16344 4.735132 CGGTTGGGCGCTCTCGAA 62.735 66.667 9.62 0.00 38.10 3.71
6687 16355 2.751436 CATCCAGTGGGCGGTTGG 60.751 66.667 9.92 0.00 0.00 3.77
6688 16356 1.303236 TTCATCCAGTGGGCGGTTG 60.303 57.895 9.92 0.27 0.00 3.77
6689 16357 1.303317 GTTCATCCAGTGGGCGGTT 60.303 57.895 9.92 0.00 0.00 4.44
6690 16358 2.351276 GTTCATCCAGTGGGCGGT 59.649 61.111 9.92 0.00 0.00 5.68
6691 16359 1.746615 CTGTTCATCCAGTGGGCGG 60.747 63.158 9.92 0.00 0.00 6.13
6693 16361 0.682209 ATGCTGTTCATCCAGTGGGC 60.682 55.000 9.92 3.16 34.84 5.36
6695 16363 1.747355 GGAATGCTGTTCATCCAGTGG 59.253 52.381 1.40 1.40 33.40 4.00
6737 16420 6.614160 TGTGTAGTGCATGAAGAAAATGATG 58.386 36.000 0.00 0.00 0.00 3.07
6739 16422 6.822667 ATGTGTAGTGCATGAAGAAAATGA 57.177 33.333 0.00 0.00 0.00 2.57
6745 16428 9.665719 TTCTAATTAATGTGTAGTGCATGAAGA 57.334 29.630 0.00 0.00 0.00 2.87
6746 16429 9.926751 CTTCTAATTAATGTGTAGTGCATGAAG 57.073 33.333 0.00 0.00 0.00 3.02
6763 16448 9.295825 TCAACCAGAATTTGCTTCTTCTAATTA 57.704 29.630 0.00 0.00 41.60 1.40
6831 16517 3.988379 TCCAAACACAGCAGATGAAAC 57.012 42.857 0.00 0.00 0.00 2.78
6866 16553 7.524717 ACCAAGCATTTGTAGAACTGTAATT 57.475 32.000 0.00 0.00 32.21 1.40
6867 16554 7.524717 AACCAAGCATTTGTAGAACTGTAAT 57.475 32.000 0.00 0.00 32.21 1.89
6868 16555 6.952773 AACCAAGCATTTGTAGAACTGTAA 57.047 33.333 0.00 0.00 32.21 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.