Multiple sequence alignment - TraesCS1A01G087400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G087400 chr1A 100.000 5114 0 0 1 5114 74275790 74270677 0.000000e+00 9444.0
1 TraesCS1A01G087400 chr1A 88.235 731 72 7 2330 3047 74103862 74103133 0.000000e+00 861.0
2 TraesCS1A01G087400 chr1A 87.778 90 11 0 4630 4719 535576201 535576290 7.000000e-19 106.0
3 TraesCS1A01G087400 chr1D 93.161 1857 85 23 1405 3251 74338785 74340609 0.000000e+00 2687.0
4 TraesCS1A01G087400 chr1D 91.254 686 33 11 724 1404 74337961 74338624 0.000000e+00 909.0
5 TraesCS1A01G087400 chr1D 87.770 417 30 15 3273 3675 74341973 74342382 7.750000e-128 468.0
6 TraesCS1A01G087400 chr1D 77.778 225 36 4 3273 3484 346016561 346016784 5.380000e-25 126.0
7 TraesCS1A01G087400 chr1D 78.571 196 31 9 3273 3459 8279053 8279246 8.990000e-23 119.0
8 TraesCS1A01G087400 chr2A 91.691 1384 66 15 3707 5068 13121744 13123100 0.000000e+00 1873.0
9 TraesCS1A01G087400 chr2A 87.597 258 24 6 3731 3982 11364720 11364975 5.010000e-75 292.0
10 TraesCS1A01G087400 chr2A 93.617 47 3 0 3706 3752 776943448 776943494 2.550000e-08 71.3
11 TraesCS1A01G087400 chr1B 91.802 988 67 7 1440 2415 117906163 117905178 0.000000e+00 1363.0
12 TraesCS1A01G087400 chr1B 92.395 789 47 7 2478 3257 117903056 117902272 0.000000e+00 1112.0
13 TraesCS1A01G087400 chr1B 89.134 589 49 6 869 1450 118354490 118355070 0.000000e+00 719.0
14 TraesCS1A01G087400 chr1B 87.472 439 41 5 1019 1450 117908020 117907589 1.280000e-135 494.0
15 TraesCS1A01G087400 chr1B 87.031 293 28 8 3705 3989 684911319 684911029 6.390000e-84 322.0
16 TraesCS1A01G087400 chr1B 90.789 152 12 2 872 1023 117921020 117920871 8.680000e-48 202.0
17 TraesCS1A01G087400 chr1B 89.474 76 7 1 782 857 117941810 117941736 1.520000e-15 95.3
18 TraesCS1A01G087400 chr1B 89.474 76 7 1 782 857 118333414 118333488 1.520000e-15 95.3
19 TraesCS1A01G087400 chr1B 88.312 77 9 0 2407 2483 117903514 117903438 5.450000e-15 93.5
20 TraesCS1A01G087400 chr6D 85.247 1071 105 28 3704 4735 447243504 447244560 0.000000e+00 1053.0
21 TraesCS1A01G087400 chr6D 83.010 206 22 3 3269 3462 15773043 15773247 1.890000e-39 174.0
22 TraesCS1A01G087400 chr6D 81.221 213 26 9 3273 3472 412312493 412312282 5.300000e-35 159.0
23 TraesCS1A01G087400 chr3A 92.237 760 34 7 3709 4446 506981410 506980654 0.000000e+00 1053.0
24 TraesCS1A01G087400 chr3A 93.215 678 22 8 4445 5114 506979429 506978768 0.000000e+00 976.0
25 TraesCS1A01G087400 chr3A 80.090 221 31 9 3273 3480 576202219 576202439 8.870000e-33 152.0
26 TraesCS1A01G087400 chr3A 87.719 57 4 3 520 574 110324479 110324424 4.270000e-06 63.9
27 TraesCS1A01G087400 chr2D 84.330 1104 102 29 3703 4759 37231691 37230612 0.000000e+00 1014.0
28 TraesCS1A01G087400 chr2D 91.858 393 27 3 4721 5108 187043898 187044290 1.250000e-150 544.0
29 TraesCS1A01G087400 chr2D 80.660 212 28 9 3273 3472 423468143 423468353 8.870000e-33 152.0
30 TraesCS1A01G087400 chr2D 80.769 104 15 5 3268 3371 520585310 520585212 5.490000e-10 76.8
31 TraesCS1A01G087400 chr2D 100.000 35 0 0 3672 3706 556022284 556022318 1.190000e-06 65.8
32 TraesCS1A01G087400 chr3D 84.254 1086 105 36 3707 4759 208583205 208582153 0.000000e+00 998.0
33 TraesCS1A01G087400 chr3D 81.951 205 21 12 3273 3463 452655103 452654901 5.300000e-35 159.0
34 TraesCS1A01G087400 chr3D 80.751 213 24 11 3273 3471 578745240 578745031 3.190000e-32 150.0
35 TraesCS1A01G087400 chr4D 84.211 1026 96 23 3706 4702 23218394 23217406 0.000000e+00 937.0
36 TraesCS1A01G087400 chr4D 86.926 283 27 7 3706 3980 350384975 350385255 4.970000e-80 309.0
37 TraesCS1A01G087400 chr4D 93.478 92 6 0 632 723 363687112 363687203 2.480000e-28 137.0
38 TraesCS1A01G087400 chr4D 79.899 199 28 6 3273 3459 72419294 72419492 8.930000e-28 135.0
39 TraesCS1A01G087400 chr4B 88.178 719 57 16 4020 4722 307582182 307582888 0.000000e+00 832.0
40 TraesCS1A01G087400 chr4B 92.513 374 22 5 4721 5091 83306118 83305748 9.750000e-147 531.0
41 TraesCS1A01G087400 chr3B 87.015 747 60 18 3995 4722 805369206 805369934 0.000000e+00 808.0
42 TraesCS1A01G087400 chr3B 83.240 358 42 13 3702 4054 805130068 805130412 3.840000e-81 313.0
43 TraesCS1A01G087400 chr3B 84.068 295 28 8 3702 3980 781982622 781982913 3.040000e-67 267.0
44 TraesCS1A01G087400 chr3B 81.481 216 25 11 3273 3473 821758296 821758081 4.100000e-36 163.0
45 TraesCS1A01G087400 chrUn 85.771 759 63 18 3995 4735 76225205 76224474 0.000000e+00 761.0
46 TraesCS1A01G087400 chrUn 83.240 358 42 13 3702 4054 291742594 291742250 3.840000e-81 313.0
47 TraesCS1A01G087400 chrUn 93.478 92 6 0 632 723 49131176 49131267 2.480000e-28 137.0
48 TraesCS1A01G087400 chr7A 88.428 579 42 17 1 564 727798907 727799475 0.000000e+00 675.0
49 TraesCS1A01G087400 chr7A 94.565 92 5 0 632 723 120755452 120755543 5.340000e-30 143.0
50 TraesCS1A01G087400 chr7A 92.784 97 6 1 632 728 274393284 274393379 6.900000e-29 139.0
51 TraesCS1A01G087400 chr5D 87.430 533 49 7 4016 4533 494213662 494213133 9.480000e-167 597.0
52 TraesCS1A01G087400 chr5D 91.371 394 27 3 4721 5114 484936082 484935696 2.710000e-147 532.0
53 TraesCS1A01G087400 chr5D 90.977 399 29 7 4721 5114 320062979 320063375 9.750000e-147 531.0
54 TraesCS1A01G087400 chr5D 80.841 214 26 5 3273 3472 557654879 557655091 2.470000e-33 154.0
55 TraesCS1A01G087400 chr5D 84.348 115 7 1 3273 3376 543767330 543767444 9.060000e-18 102.0
56 TraesCS1A01G087400 chr5B 92.481 399 24 4 4721 5114 458054421 458054024 2.670000e-157 566.0
57 TraesCS1A01G087400 chr5B 91.582 392 26 5 4721 5106 381768037 381767647 7.540000e-148 534.0
58 TraesCS1A01G087400 chr5B 88.889 288 27 5 3707 3989 477431630 477431917 2.930000e-92 350.0
59 TraesCS1A01G087400 chr6B 91.960 398 28 2 4721 5114 22894854 22894457 5.790000e-154 555.0
60 TraesCS1A01G087400 chr6B 83.276 293 29 10 3707 3982 510245024 510244735 8.500000e-63 252.0
61 TraesCS1A01G087400 chr6B 93.548 93 6 0 632 724 692818928 692819020 6.900000e-29 139.0
62 TraesCS1A01G087400 chr7D 79.248 612 75 27 1 575 32018217 32018813 3.740000e-101 379.0
63 TraesCS1A01G087400 chr7D 82.488 217 24 9 3273 3477 629606545 629606331 1.460000e-40 178.0
64 TraesCS1A01G087400 chr2B 82.547 212 24 3 3273 3471 680445532 680445743 1.890000e-39 174.0
65 TraesCS1A01G087400 chr2B 80.930 215 26 5 3273 3474 636877788 636877576 6.860000e-34 156.0
66 TraesCS1A01G087400 chr6A 95.745 94 4 0 636 729 585786257 585786164 8.870000e-33 152.0
67 TraesCS1A01G087400 chr4A 94.737 95 4 1 635 729 647276301 647276208 4.130000e-31 147.0
68 TraesCS1A01G087400 chr4A 94.565 92 5 0 632 723 597061882 597061973 5.340000e-30 143.0
69 TraesCS1A01G087400 chr4A 93.548 93 6 0 632 724 12206821 12206913 6.900000e-29 139.0
70 TraesCS1A01G087400 chr4A 80.952 105 15 4 3269 3370 4252804 4252906 1.530000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G087400 chr1A 74270677 74275790 5113 True 9444.000000 9444 100.000000 1 5114 1 chr1A.!!$R2 5113
1 TraesCS1A01G087400 chr1A 74103133 74103862 729 True 861.000000 861 88.235000 2330 3047 1 chr1A.!!$R1 717
2 TraesCS1A01G087400 chr1D 74337961 74342382 4421 False 1354.666667 2687 90.728333 724 3675 3 chr1D.!!$F3 2951
3 TraesCS1A01G087400 chr2A 13121744 13123100 1356 False 1873.000000 1873 91.691000 3707 5068 1 chr2A.!!$F2 1361
4 TraesCS1A01G087400 chr1B 117902272 117908020 5748 True 765.625000 1363 89.995250 1019 3257 4 chr1B.!!$R4 2238
5 TraesCS1A01G087400 chr1B 118354490 118355070 580 False 719.000000 719 89.134000 869 1450 1 chr1B.!!$F2 581
6 TraesCS1A01G087400 chr6D 447243504 447244560 1056 False 1053.000000 1053 85.247000 3704 4735 1 chr6D.!!$F2 1031
7 TraesCS1A01G087400 chr3A 506978768 506981410 2642 True 1014.500000 1053 92.726000 3709 5114 2 chr3A.!!$R2 1405
8 TraesCS1A01G087400 chr2D 37230612 37231691 1079 True 1014.000000 1014 84.330000 3703 4759 1 chr2D.!!$R1 1056
9 TraesCS1A01G087400 chr3D 208582153 208583205 1052 True 998.000000 998 84.254000 3707 4759 1 chr3D.!!$R1 1052
10 TraesCS1A01G087400 chr4D 23217406 23218394 988 True 937.000000 937 84.211000 3706 4702 1 chr4D.!!$R1 996
11 TraesCS1A01G087400 chr4B 307582182 307582888 706 False 832.000000 832 88.178000 4020 4722 1 chr4B.!!$F1 702
12 TraesCS1A01G087400 chr3B 805369206 805369934 728 False 808.000000 808 87.015000 3995 4722 1 chr3B.!!$F3 727
13 TraesCS1A01G087400 chrUn 76224474 76225205 731 True 761.000000 761 85.771000 3995 4735 1 chrUn.!!$R1 740
14 TraesCS1A01G087400 chr7A 727798907 727799475 568 False 675.000000 675 88.428000 1 564 1 chr7A.!!$F3 563
15 TraesCS1A01G087400 chr5D 494213133 494213662 529 True 597.000000 597 87.430000 4016 4533 1 chr5D.!!$R2 517
16 TraesCS1A01G087400 chr7D 32018217 32018813 596 False 379.000000 379 79.248000 1 575 1 chr7D.!!$F1 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
602 640 0.037975 TAAAACAGACTCGCCCGGAC 60.038 55.0 0.73 0.00 0.00 4.79 F
654 692 0.108186 CAGGAATACTGCGAGCACCA 60.108 55.0 0.00 0.00 40.97 4.17 F
657 695 0.175760 GAATACTGCGAGCACCAGGA 59.824 55.0 0.00 0.00 34.65 3.86 F
1921 3569 0.449388 CAGCCAACTTCGATCAAGCC 59.551 55.0 0.00 0.00 35.17 4.35 F
2501 6265 0.108424 ACTACTACTGCTGCTGCTGC 60.108 55.0 22.51 22.51 41.07 5.25 F
2503 6267 0.108472 TACTACTGCTGCTGCTGCTG 60.108 55.0 27.75 27.75 41.07 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2499 6263 0.108472 CAGTAGCAGTAGCAGCAGCA 60.108 55.000 3.17 0.0 45.49 4.41 R
2501 6265 0.175302 AGCAGTAGCAGTAGCAGCAG 59.825 55.000 0.00 0.0 45.49 4.24 R
2502 6266 1.135139 GTAGCAGTAGCAGTAGCAGCA 59.865 52.381 0.00 0.0 45.49 4.41 R
3620 8751 0.030235 CGCCATTGACGTATCCTCGA 59.970 55.000 0.00 0.0 34.70 4.04 R
3867 9022 0.037790 TCGTTGTCACGCATCCATGA 60.038 50.000 0.00 0.0 46.70 3.07 R
4475 10901 2.031508 ACCGGTGATTTGTTTTGCTACG 60.032 45.455 6.12 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 2.166459 CTCTAGTGACATTGAAGGCCGA 59.834 50.000 0.00 0.00 0.00 5.54
93 94 4.787280 CCCCTGCCGTCCTCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
94 95 3.151022 CCCTGCCGTCCTCTCCTC 61.151 72.222 0.00 0.00 0.00 3.71
95 96 3.151022 CCTGCCGTCCTCTCCTCC 61.151 72.222 0.00 0.00 0.00 4.30
96 97 2.043450 CTGCCGTCCTCTCCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
129 130 4.472833 AGTCTAGTCCCTGCTTCAATCAAT 59.527 41.667 0.00 0.00 0.00 2.57
133 146 4.670765 AGTCCCTGCTTCAATCAATTTCT 58.329 39.130 0.00 0.00 0.00 2.52
143 156 7.086376 GCTTCAATCAATTTCTTGCTAGTTCA 58.914 34.615 0.00 0.00 32.11 3.18
148 161 4.216257 TCAATTTCTTGCTAGTTCACCAGC 59.784 41.667 0.00 0.00 38.31 4.85
150 163 4.617253 TTTCTTGCTAGTTCACCAGCTA 57.383 40.909 0.00 0.00 38.63 3.32
172 185 0.756294 TCGTTCCTCAACAGCCAAGA 59.244 50.000 0.00 0.00 32.14 3.02
173 186 1.151668 CGTTCCTCAACAGCCAAGAG 58.848 55.000 0.00 0.00 32.14 2.85
219 234 8.504815 CATCATCTCAAATACTGAATGGATGTC 58.495 37.037 0.00 0.00 36.40 3.06
227 242 3.866651 ACTGAATGGATGTCTAGCACAC 58.133 45.455 0.00 0.00 38.04 3.82
471 502 3.581024 TTTTGGATGCATCTCAAGTGC 57.419 42.857 25.28 8.17 42.81 4.40
536 573 4.380791 ACATTAAGGGTCCCCAGTTCTAT 58.619 43.478 3.51 0.00 38.92 1.98
543 580 1.207329 GTCCCCAGTTCTATTGTCGCT 59.793 52.381 0.00 0.00 0.00 4.93
594 632 6.487689 CTGGTCAGGATTTAAAACAGACTC 57.512 41.667 15.06 9.21 0.00 3.36
595 633 4.994852 TGGTCAGGATTTAAAACAGACTCG 59.005 41.667 15.06 0.00 0.00 4.18
596 634 4.142881 GGTCAGGATTTAAAACAGACTCGC 60.143 45.833 15.06 2.19 0.00 5.03
597 635 4.000988 TCAGGATTTAAAACAGACTCGCC 58.999 43.478 0.00 0.00 0.00 5.54
598 636 3.127030 CAGGATTTAAAACAGACTCGCCC 59.873 47.826 0.00 0.00 0.00 6.13
599 637 2.095372 GGATTTAAAACAGACTCGCCCG 59.905 50.000 0.00 0.00 0.00 6.13
600 638 1.515081 TTTAAAACAGACTCGCCCGG 58.485 50.000 0.00 0.00 0.00 5.73
601 639 0.680618 TTAAAACAGACTCGCCCGGA 59.319 50.000 0.73 0.00 0.00 5.14
602 640 0.037975 TAAAACAGACTCGCCCGGAC 60.038 55.000 0.73 0.00 0.00 4.79
603 641 3.569049 AAACAGACTCGCCCGGACG 62.569 63.158 2.72 2.72 0.00 4.79
607 645 4.368543 GACTCGCCCGGACGGTTT 62.369 66.667 11.19 0.00 0.00 3.27
608 646 3.871248 GACTCGCCCGGACGGTTTT 62.871 63.158 11.19 0.00 0.00 2.43
609 647 2.667199 CTCGCCCGGACGGTTTTT 60.667 61.111 11.19 0.00 0.00 1.94
633 671 6.785488 TTTTAGCATCAGTACAGACACAAG 57.215 37.500 0.00 0.00 0.00 3.16
634 672 2.693069 AGCATCAGTACAGACACAAGC 58.307 47.619 0.00 0.00 0.00 4.01
635 673 1.734465 GCATCAGTACAGACACAAGCC 59.266 52.381 0.00 0.00 0.00 4.35
636 674 2.871637 GCATCAGTACAGACACAAGCCA 60.872 50.000 0.00 0.00 0.00 4.75
637 675 2.820059 TCAGTACAGACACAAGCCAG 57.180 50.000 0.00 0.00 0.00 4.85
638 676 1.344438 TCAGTACAGACACAAGCCAGG 59.656 52.381 0.00 0.00 0.00 4.45
639 677 1.344438 CAGTACAGACACAAGCCAGGA 59.656 52.381 0.00 0.00 0.00 3.86
640 678 2.047061 AGTACAGACACAAGCCAGGAA 58.953 47.619 0.00 0.00 0.00 3.36
641 679 2.639839 AGTACAGACACAAGCCAGGAAT 59.360 45.455 0.00 0.00 0.00 3.01
642 680 3.838317 AGTACAGACACAAGCCAGGAATA 59.162 43.478 0.00 0.00 0.00 1.75
643 681 3.059352 ACAGACACAAGCCAGGAATAC 57.941 47.619 0.00 0.00 0.00 1.89
644 682 2.639839 ACAGACACAAGCCAGGAATACT 59.360 45.455 0.00 0.00 0.00 2.12
646 684 1.740025 GACACAAGCCAGGAATACTGC 59.260 52.381 0.00 0.00 46.14 4.40
647 685 0.729116 CACAAGCCAGGAATACTGCG 59.271 55.000 0.00 0.00 46.14 5.18
648 686 0.613260 ACAAGCCAGGAATACTGCGA 59.387 50.000 0.00 0.00 46.14 5.10
649 687 1.293924 CAAGCCAGGAATACTGCGAG 58.706 55.000 0.00 0.00 46.14 5.03
650 688 0.462759 AAGCCAGGAATACTGCGAGC 60.463 55.000 0.00 0.00 46.14 5.03
651 689 1.153369 GCCAGGAATACTGCGAGCA 60.153 57.895 0.00 0.00 46.14 4.26
652 690 1.432270 GCCAGGAATACTGCGAGCAC 61.432 60.000 0.00 0.00 46.14 4.40
653 691 0.811616 CCAGGAATACTGCGAGCACC 60.812 60.000 0.00 0.00 46.14 5.01
654 692 0.108186 CAGGAATACTGCGAGCACCA 60.108 55.000 0.00 0.00 40.97 4.17
655 693 0.176680 AGGAATACTGCGAGCACCAG 59.823 55.000 0.00 0.00 36.41 4.00
656 694 0.811616 GGAATACTGCGAGCACCAGG 60.812 60.000 0.00 0.00 34.65 4.45
657 695 0.175760 GAATACTGCGAGCACCAGGA 59.824 55.000 0.00 0.00 34.65 3.86
658 696 0.833287 AATACTGCGAGCACCAGGAT 59.167 50.000 0.00 0.00 35.39 3.24
659 697 0.833287 ATACTGCGAGCACCAGGATT 59.167 50.000 0.00 0.00 29.56 3.01
660 698 0.613260 TACTGCGAGCACCAGGATTT 59.387 50.000 0.00 0.00 34.65 2.17
661 699 0.613260 ACTGCGAGCACCAGGATTTA 59.387 50.000 0.00 0.00 34.65 1.40
662 700 1.003118 ACTGCGAGCACCAGGATTTAA 59.997 47.619 0.00 0.00 34.65 1.52
663 701 2.083774 CTGCGAGCACCAGGATTTAAA 58.916 47.619 0.00 0.00 0.00 1.52
664 702 1.810151 TGCGAGCACCAGGATTTAAAC 59.190 47.619 0.00 0.00 0.00 2.01
665 703 1.132453 GCGAGCACCAGGATTTAAACC 59.868 52.381 0.00 0.00 0.00 3.27
666 704 1.743394 CGAGCACCAGGATTTAAACCC 59.257 52.381 0.00 0.00 0.00 4.11
667 705 2.618045 CGAGCACCAGGATTTAAACCCT 60.618 50.000 0.00 0.00 0.00 4.34
686 724 4.191739 CCCTGATGGGTTGGAAATACCAC 61.192 52.174 0.00 0.00 46.21 4.16
687 725 6.413893 CCCTGATGGGTTGGAAATACCACT 62.414 50.000 0.00 0.00 46.21 4.00
694 732 2.871096 TGGAAATACCACTGTCCACC 57.129 50.000 0.00 0.00 44.64 4.61
695 733 2.344592 TGGAAATACCACTGTCCACCT 58.655 47.619 0.00 0.00 44.64 4.00
696 734 3.522759 TGGAAATACCACTGTCCACCTA 58.477 45.455 0.00 0.00 44.64 3.08
697 735 3.911260 TGGAAATACCACTGTCCACCTAA 59.089 43.478 0.00 0.00 44.64 2.69
698 736 4.259356 GGAAATACCACTGTCCACCTAAC 58.741 47.826 0.00 0.00 38.79 2.34
699 737 3.994931 AATACCACTGTCCACCTAACC 57.005 47.619 0.00 0.00 0.00 2.85
700 738 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
701 739 1.513858 ACCACTGTCCACCTAACCAA 58.486 50.000 0.00 0.00 0.00 3.67
702 740 1.142262 ACCACTGTCCACCTAACCAAC 59.858 52.381 0.00 0.00 0.00 3.77
703 741 1.420138 CCACTGTCCACCTAACCAACT 59.580 52.381 0.00 0.00 0.00 3.16
704 742 2.158667 CCACTGTCCACCTAACCAACTT 60.159 50.000 0.00 0.00 0.00 2.66
705 743 3.071892 CCACTGTCCACCTAACCAACTTA 59.928 47.826 0.00 0.00 0.00 2.24
706 744 4.445162 CCACTGTCCACCTAACCAACTTAA 60.445 45.833 0.00 0.00 0.00 1.85
707 745 4.514066 CACTGTCCACCTAACCAACTTAAC 59.486 45.833 0.00 0.00 0.00 2.01
708 746 4.070009 CTGTCCACCTAACCAACTTAACC 58.930 47.826 0.00 0.00 0.00 2.85
709 747 3.458857 TGTCCACCTAACCAACTTAACCA 59.541 43.478 0.00 0.00 0.00 3.67
710 748 3.817084 GTCCACCTAACCAACTTAACCAC 59.183 47.826 0.00 0.00 0.00 4.16
711 749 3.458857 TCCACCTAACCAACTTAACCACA 59.541 43.478 0.00 0.00 0.00 4.17
712 750 3.818773 CCACCTAACCAACTTAACCACAG 59.181 47.826 0.00 0.00 0.00 3.66
713 751 3.818773 CACCTAACCAACTTAACCACAGG 59.181 47.826 0.00 0.00 0.00 4.00
714 752 3.460712 ACCTAACCAACTTAACCACAGGT 59.539 43.478 0.00 0.00 37.65 4.00
716 754 4.277423 CCTAACCAACTTAACCACAGGTTG 59.723 45.833 11.51 0.00 46.35 3.77
717 755 3.655615 ACCAACTTAACCACAGGTTGA 57.344 42.857 11.51 2.55 46.35 3.18
718 756 4.178956 ACCAACTTAACCACAGGTTGAT 57.821 40.909 11.51 0.00 46.35 2.57
719 757 4.542697 ACCAACTTAACCACAGGTTGATT 58.457 39.130 11.51 0.89 46.35 2.57
720 758 4.583073 ACCAACTTAACCACAGGTTGATTC 59.417 41.667 11.51 0.00 46.35 2.52
721 759 4.320202 CCAACTTAACCACAGGTTGATTCG 60.320 45.833 11.51 0.00 46.35 3.34
722 760 2.812011 ACTTAACCACAGGTTGATTCGC 59.188 45.455 11.51 0.00 46.35 4.70
756 794 4.798574 ACAGCCGAGAAGCAAAATTTTAG 58.201 39.130 2.44 0.00 34.23 1.85
795 833 3.429547 CCATTAGCGCACAGAGTACTCTT 60.430 47.826 23.01 10.03 37.98 2.85
806 844 4.255301 CAGAGTACTCTTACCGACACTCT 58.745 47.826 23.01 0.00 38.54 3.24
820 858 3.774528 CTCTGCCGCTACCAGCCA 61.775 66.667 0.00 0.00 38.18 4.75
821 859 3.729965 CTCTGCCGCTACCAGCCAG 62.730 68.421 0.00 0.00 38.18 4.85
858 896 4.925390 AGGAAATCCTGCTTCTTCTTCT 57.075 40.909 0.00 0.00 46.55 2.85
1023 1065 0.668096 ACGGTTTGCGCGATAACTCA 60.668 50.000 12.10 0.00 0.00 3.41
1032 1074 2.499685 GATAACTCACGCCCGCCT 59.500 61.111 0.00 0.00 0.00 5.52
1082 1130 1.153353 GAATTCCGCGTGAGTTCCAA 58.847 50.000 16.48 0.00 34.53 3.53
1140 1188 2.356313 CAACGCTCCGCTGACACT 60.356 61.111 0.00 0.00 0.00 3.55
1143 1191 3.175240 CGCTCCGCTGACACTTCG 61.175 66.667 0.00 0.00 0.00 3.79
1153 1201 2.280797 ACACTTCGCATGCACCGT 60.281 55.556 19.57 7.71 0.00 4.83
1157 1205 2.798501 CTTCGCATGCACCGTACCG 61.799 63.158 19.57 0.00 0.00 4.02
1298 1346 2.101233 GGTTCGAAGCCGGCTCTTC 61.101 63.158 32.93 23.79 39.17 2.87
1302 1350 2.574399 GAAGCCGGCTCTTCGTCT 59.426 61.111 32.93 12.84 33.93 4.18
1303 1351 1.079750 GAAGCCGGCTCTTCGTCTT 60.080 57.895 32.93 11.91 33.93 3.01
1393 1442 4.654262 TGTGATTATCTACCCCTGTTCCTC 59.346 45.833 0.00 0.00 0.00 3.71
1413 1622 8.844244 GTTCCTCGGACTAGTATGTATCTTTTA 58.156 37.037 0.00 0.00 0.00 1.52
1452 3097 5.118510 GTGTTTCAAGTTTCTTGTGGTTGTG 59.881 40.000 8.93 0.00 0.00 3.33
1481 3126 6.735968 GCAGATACTGTTACGAGGATGATCAA 60.736 42.308 0.00 0.00 33.43 2.57
1555 3200 9.685828 TGACAGGTATAATTTACAAAACTTTGC 57.314 29.630 2.07 0.00 41.79 3.68
1583 3228 5.891551 AGATTTGTACGGGCCTCATTTAAAT 59.108 36.000 0.84 3.50 0.00 1.40
1623 3270 7.730364 ACACTAGATAGGAAACAAACTTGTG 57.270 36.000 0.00 0.00 41.31 3.33
1646 3293 9.367160 TGTGATATCAACTCTATGATTGGACTA 57.633 33.333 7.07 0.00 40.44 2.59
1678 3325 5.009911 TCAAAAGACCATGATGTTCTGGTTG 59.990 40.000 9.15 9.15 45.70 3.77
1682 3329 4.520492 AGACCATGATGTTCTGGTTGTTTC 59.480 41.667 0.00 0.00 45.70 2.78
1713 3360 9.255029 ACATTGGAAATAGTTTTACTTGCCTAT 57.745 29.630 0.00 0.00 0.00 2.57
1766 3413 1.599542 GAATGTGAGTAATCTGCCGGC 59.400 52.381 22.73 22.73 0.00 6.13
1791 3439 7.277098 GCGTTTCTTGTCCATCATACTAGTTAA 59.723 37.037 0.00 0.00 0.00 2.01
1855 3503 7.934855 ACAGGAAGATCATTCATATAATGCC 57.065 36.000 0.00 0.00 0.00 4.40
1895 3543 1.302832 GCTGTGGTGGAGAACTGGG 60.303 63.158 0.00 0.00 0.00 4.45
1921 3569 0.449388 CAGCCAACTTCGATCAAGCC 59.551 55.000 0.00 0.00 35.17 4.35
1955 3603 2.798283 CGTTACCAAAAGCAGACGAAGA 59.202 45.455 0.00 0.00 32.73 2.87
1960 3608 4.137543 ACCAAAAGCAGACGAAGAGATTT 58.862 39.130 0.00 0.00 0.00 2.17
2043 3691 2.225467 AGGTTCTTTGCTGCAAGAGTC 58.775 47.619 15.39 7.92 34.07 3.36
2084 3732 5.120830 GGCTACTACAGAACTTGTTGATGTG 59.879 44.000 9.73 4.86 41.29 3.21
2204 3852 9.529325 TTTAGGATATCACAGTGAAATAAGACG 57.471 33.333 7.50 0.00 0.00 4.18
2230 3879 8.026607 GGCAGAATTGTATTACTAAAGCAACAA 58.973 33.333 0.00 0.00 0.00 2.83
2377 4037 7.560368 AGATAACTTAGCACATAAGCTGACTT 58.440 34.615 0.00 0.00 46.11 3.01
2417 5749 1.913419 GGTGGAGTCAATGTTCCCCTA 59.087 52.381 0.00 0.00 32.29 3.53
2493 6257 9.640952 ACTACTACTACTACTACTACTACTGCT 57.359 37.037 0.00 0.00 0.00 4.24
2494 6258 9.897744 CTACTACTACTACTACTACTACTGCTG 57.102 40.741 0.00 0.00 0.00 4.41
2495 6259 7.209475 ACTACTACTACTACTACTACTGCTGC 58.791 42.308 0.00 0.00 0.00 5.25
2496 6260 6.237887 ACTACTACTACTACTACTGCTGCT 57.762 41.667 0.00 0.00 0.00 4.24
2497 6261 6.050432 ACTACTACTACTACTACTGCTGCTG 58.950 44.000 4.89 4.89 0.00 4.41
2498 6262 3.628487 ACTACTACTACTACTGCTGCTGC 59.372 47.826 8.89 8.89 40.20 5.25
2499 6263 2.729194 ACTACTACTACTGCTGCTGCT 58.271 47.619 17.00 0.00 40.48 4.24
2500 6264 2.425312 ACTACTACTACTGCTGCTGCTG 59.575 50.000 18.66 18.66 42.70 4.41
2501 6265 0.108424 ACTACTACTGCTGCTGCTGC 60.108 55.000 22.51 22.51 41.07 5.25
2502 6266 0.175302 CTACTACTGCTGCTGCTGCT 59.825 55.000 27.67 14.24 41.07 4.24
2503 6267 0.108472 TACTACTGCTGCTGCTGCTG 60.108 55.000 27.75 27.75 41.07 4.41
2512 6276 3.487417 CTGCTGCTGCTGCTACTG 58.513 61.111 27.67 13.98 40.48 2.74
2518 6282 0.108472 TGCTGCTGCTACTGCTACTG 60.108 55.000 17.00 0.00 40.48 2.74
2576 6342 9.212641 CTCTTCACTATGTTTCATTTCAGAGAA 57.787 33.333 0.00 0.00 0.00 2.87
2761 6527 6.779049 TGAGGCAATAGATGGAGCAATATTTT 59.221 34.615 0.00 0.00 0.00 1.82
3022 6790 1.944699 CTGGACGTCGTGATGTTGCG 61.945 60.000 9.92 0.00 0.00 4.85
3041 6809 3.188786 GGAGCTCGCGCGTGATTT 61.189 61.111 33.22 18.11 42.32 2.17
3089 6859 1.881973 CCAATGATATCAAGCACCCCG 59.118 52.381 9.99 0.00 0.00 5.73
3124 6894 4.368543 GCAGGCCACTTTGCTGCC 62.369 66.667 5.01 0.00 45.70 4.85
3161 6931 7.121315 ACTTTGAGGATTAGGTAGACAATTTGC 59.879 37.037 0.00 0.00 0.00 3.68
3188 6958 5.659440 ACTTGTATTTTTAGGTGGCCATG 57.341 39.130 9.72 0.00 0.00 3.66
3191 6961 2.938428 ATTTTTAGGTGGCCATGGGA 57.062 45.000 9.72 0.00 0.00 4.37
3194 6964 0.780637 TTTAGGTGGCCATGGGACAA 59.219 50.000 9.72 0.00 45.35 3.18
3195 6965 1.006813 TTAGGTGGCCATGGGACAAT 58.993 50.000 9.72 0.00 45.35 2.71
3196 6966 1.900254 TAGGTGGCCATGGGACAATA 58.100 50.000 9.72 0.00 45.35 1.90
3197 6967 0.552848 AGGTGGCCATGGGACAATAG 59.447 55.000 9.72 0.00 45.35 1.73
3198 6968 0.468029 GGTGGCCATGGGACAATAGG 60.468 60.000 9.72 0.00 45.35 2.57
3286 8407 6.665992 AATCCCTTATAGCATGACGACTTA 57.334 37.500 0.00 0.00 0.00 2.24
3295 8416 2.925306 GCATGACGACTTACCGACTGTT 60.925 50.000 0.00 0.00 0.00 3.16
3301 8422 5.238432 TGACGACTTACCGACTGTTTACTAA 59.762 40.000 0.00 0.00 0.00 2.24
3322 8443 3.897122 AAGGTTTGCCCGGCTCCA 61.897 61.111 11.61 0.00 38.74 3.86
3323 8444 3.868200 AAGGTTTGCCCGGCTCCAG 62.868 63.158 11.61 0.00 38.74 3.86
3324 8445 4.660938 GGTTTGCCCGGCTCCAGT 62.661 66.667 11.61 0.00 0.00 4.00
3325 8446 3.365265 GTTTGCCCGGCTCCAGTG 61.365 66.667 11.61 0.00 0.00 3.66
3326 8447 3.565214 TTTGCCCGGCTCCAGTGA 61.565 61.111 11.61 0.00 0.00 3.41
3336 8457 2.363018 TCCAGTGAGGGAGAGGCG 60.363 66.667 0.00 0.00 38.24 5.52
3337 8458 2.363018 CCAGTGAGGGAGAGGCGA 60.363 66.667 0.00 0.00 0.00 5.54
3338 8459 1.760086 CCAGTGAGGGAGAGGCGAT 60.760 63.158 0.00 0.00 0.00 4.58
3359 8489 1.587613 CTTCGGCTCGCTCTAGTGC 60.588 63.158 6.72 6.72 0.00 4.40
3370 8500 2.788030 GCTCTAGTGCTTGTAGTCGTC 58.212 52.381 9.52 0.00 0.00 4.20
3376 8506 2.810274 AGTGCTTGTAGTCGTCGTTAGA 59.190 45.455 0.00 0.00 0.00 2.10
3379 8509 3.437741 TGCTTGTAGTCGTCGTTAGATGA 59.562 43.478 0.00 0.00 39.89 2.92
3386 8517 0.524816 CGTCGTTAGATGACCACGGG 60.525 60.000 0.00 0.00 35.43 5.28
3461 8592 9.334947 TGAAGATGAATAGATTGGATGTTTCTC 57.665 33.333 0.00 0.00 0.00 2.87
3462 8593 9.334947 GAAGATGAATAGATTGGATGTTTCTCA 57.665 33.333 0.00 0.00 0.00 3.27
3467 8598 9.519191 TGAATAGATTGGATGTTTCTCAAAAGA 57.481 29.630 0.00 0.00 0.00 2.52
3489 8620 2.453983 AAATCATGTTGGTTTGGCCG 57.546 45.000 0.00 0.00 41.21 6.13
3498 8629 0.741915 TGGTTTGGCCGTGTTCTTTC 59.258 50.000 0.00 0.00 41.21 2.62
3503 8634 3.695830 TTGGCCGTGTTCTTTCTCTAT 57.304 42.857 0.00 0.00 0.00 1.98
3517 8648 7.594351 TCTTTCTCTATGTGCATGAGAGTAT 57.406 36.000 17.20 0.00 37.99 2.12
3541 8672 2.232941 AGTACGTATGTGACAAGGGTGG 59.767 50.000 0.00 0.00 0.00 4.61
3567 8698 7.012610 GCCCTTTCTTGTACTACAAAACTTGTA 59.987 37.037 3.26 0.00 43.27 2.41
3581 8712 3.859745 ACTTGTATGCATGTATTCGCG 57.140 42.857 10.16 0.00 32.19 5.87
3583 8714 1.507562 TGTATGCATGTATTCGCGGG 58.492 50.000 10.16 0.00 0.00 6.13
3606 8737 6.456315 GGGAAAAACAACTTGTGTGCATAAAC 60.456 38.462 0.00 0.00 40.60 2.01
3607 8738 5.694674 AAAACAACTTGTGTGCATAAACG 57.305 34.783 0.00 0.00 40.60 3.60
3613 8744 3.438781 ACTTGTGTGCATAAACGTATGGG 59.561 43.478 0.00 0.00 38.06 4.00
3638 8769 2.218953 TTCGAGGATACGTCAATGGC 57.781 50.000 0.00 0.00 46.39 4.40
3676 8807 9.991906 TTATAGAAGGGAGAATGTTAATTACCG 57.008 33.333 0.00 0.00 0.00 4.02
3677 8808 6.555463 AGAAGGGAGAATGTTAATTACCGA 57.445 37.500 0.00 0.00 0.00 4.69
3678 8809 6.954232 AGAAGGGAGAATGTTAATTACCGAA 58.046 36.000 0.00 0.00 0.00 4.30
3679 8810 7.399634 AGAAGGGAGAATGTTAATTACCGAAA 58.600 34.615 0.00 0.00 0.00 3.46
3680 8811 7.886446 AGAAGGGAGAATGTTAATTACCGAAAA 59.114 33.333 0.00 0.00 0.00 2.29
3681 8812 8.411991 AAGGGAGAATGTTAATTACCGAAAAA 57.588 30.769 0.00 0.00 0.00 1.94
3682 8813 8.051901 AGGGAGAATGTTAATTACCGAAAAAG 57.948 34.615 0.00 0.00 0.00 2.27
3683 8814 7.122204 AGGGAGAATGTTAATTACCGAAAAAGG 59.878 37.037 0.00 0.00 37.30 3.11
3684 8815 6.750501 GGAGAATGTTAATTACCGAAAAAGGC 59.249 38.462 0.00 0.00 33.69 4.35
3685 8816 7.362660 GGAGAATGTTAATTACCGAAAAAGGCT 60.363 37.037 0.00 0.00 33.69 4.58
3686 8817 7.892609 AGAATGTTAATTACCGAAAAAGGCTT 58.107 30.769 0.00 0.00 33.69 4.35
3687 8818 8.364894 AGAATGTTAATTACCGAAAAAGGCTTT 58.635 29.630 6.68 6.68 33.69 3.51
3688 8819 8.528917 AATGTTAATTACCGAAAAAGGCTTTC 57.471 30.769 13.76 0.41 33.69 2.62
3690 8821 2.691984 TTACCGAAAAAGGCTTTCGC 57.308 45.000 13.76 7.41 46.89 4.70
3803 8934 1.572415 ACCGTCAGATCCTAACCCCTA 59.428 52.381 0.00 0.00 0.00 3.53
3804 8935 2.179424 ACCGTCAGATCCTAACCCCTAT 59.821 50.000 0.00 0.00 0.00 2.57
3806 8937 3.258622 CCGTCAGATCCTAACCCCTATTC 59.741 52.174 0.00 0.00 0.00 1.75
3807 8938 4.153411 CGTCAGATCCTAACCCCTATTCT 58.847 47.826 0.00 0.00 0.00 2.40
3808 8939 5.322754 CGTCAGATCCTAACCCCTATTCTA 58.677 45.833 0.00 0.00 0.00 2.10
4116 9293 1.758514 GAGATCCCCGAGCTGACCA 60.759 63.158 0.00 0.00 0.00 4.02
4157 9334 2.035237 TTTTCTGGCTGACCCGACGT 62.035 55.000 0.00 0.00 35.87 4.34
4206 9397 2.502142 TTTGTCATGGATGCAGCTCT 57.498 45.000 0.22 0.00 0.00 4.09
4296 9489 3.427528 GTCGTAGCAAATGAAGACAACGA 59.572 43.478 0.00 0.00 35.94 3.85
4303 9496 4.786507 CAAATGAAGACAACGATTGCAGA 58.213 39.130 0.00 0.00 0.00 4.26
4375 9572 2.684881 AGCGGATGTAGCAAAATTCCTG 59.315 45.455 0.00 0.00 37.01 3.86
4704 11144 4.362279 CTGGTTGGTGTTGTTTTCATCTG 58.638 43.478 0.00 0.00 0.00 2.90
4774 11216 6.461640 AGTAGCAAAATTCTACTACGGTTGT 58.538 36.000 4.02 0.23 43.40 3.32
4864 11306 5.640357 CGCCAGTAGTAACAAAATCCAACTA 59.360 40.000 0.00 0.00 0.00 2.24
4867 11309 6.647895 CCAGTAGTAACAAAATCCAACTACGT 59.352 38.462 0.00 0.00 44.54 3.57
4908 11350 4.122046 GTGCAGTTCCATTGAAGCTTTTT 58.878 39.130 0.00 0.00 0.00 1.94
4990 11432 0.599558 TAGTATACGCGGGTGCATCC 59.400 55.000 16.34 5.70 42.97 3.51
4991 11433 1.068417 GTATACGCGGGTGCATCCA 59.932 57.895 18.15 0.00 42.97 3.41
4992 11434 0.944311 GTATACGCGGGTGCATCCAG 60.944 60.000 18.15 11.99 42.97 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 3.391955 GGACTAGACTAGCAGAGGTAGGA 59.608 52.174 9.52 0.00 37.87 2.94
94 95 3.497227 GGGACTAGACTAGCAGAGGTAGG 60.497 56.522 9.52 0.00 37.87 3.18
95 96 3.393278 AGGGACTAGACTAGCAGAGGTAG 59.607 52.174 9.52 2.00 36.02 3.18
96 97 3.136809 CAGGGACTAGACTAGCAGAGGTA 59.863 52.174 9.52 0.00 36.02 3.08
143 156 2.145397 TGAGGAACGATCTAGCTGGT 57.855 50.000 0.00 0.00 0.00 4.00
148 161 2.166459 TGGCTGTTGAGGAACGATCTAG 59.834 50.000 0.00 0.00 34.49 2.43
150 163 0.976641 TGGCTGTTGAGGAACGATCT 59.023 50.000 0.00 0.00 34.49 2.75
172 185 2.423577 GAAATTACACACCTGGACGCT 58.576 47.619 0.00 0.00 0.00 5.07
173 186 1.467342 GGAAATTACACACCTGGACGC 59.533 52.381 0.00 0.00 0.00 5.19
175 188 4.331968 TGATGGAAATTACACACCTGGAC 58.668 43.478 0.00 0.00 0.00 4.02
176 189 4.649267 TGATGGAAATTACACACCTGGA 57.351 40.909 0.00 0.00 0.00 3.86
177 190 5.195940 AGATGATGGAAATTACACACCTGG 58.804 41.667 0.00 0.00 0.00 4.45
178 191 5.882000 TGAGATGATGGAAATTACACACCTG 59.118 40.000 0.00 0.00 0.00 4.00
219 234 8.915871 AAACATAAATTTGCTATGTGTGCTAG 57.084 30.769 0.00 0.00 39.40 3.42
323 340 9.507329 ACAATTTCTATGAACTTTTGCTAGAGA 57.493 29.630 0.00 0.00 0.00 3.10
361 391 7.039853 TGCAAAGTCTTTGATGATCATACCAAA 60.040 33.333 26.14 17.12 43.26 3.28
524 561 1.480954 GAGCGACAATAGAACTGGGGA 59.519 52.381 0.00 0.00 0.00 4.81
543 580 2.196997 CTGACATTTCAGGGGCCGGA 62.197 60.000 5.05 0.00 45.06 5.14
575 613 4.000988 GGCGAGTCTGTTTTAAATCCTGA 58.999 43.478 0.00 0.00 0.00 3.86
576 614 3.127030 GGGCGAGTCTGTTTTAAATCCTG 59.873 47.826 0.00 0.00 0.00 3.86
577 615 3.344515 GGGCGAGTCTGTTTTAAATCCT 58.655 45.455 0.00 0.00 0.00 3.24
578 616 2.095372 CGGGCGAGTCTGTTTTAAATCC 59.905 50.000 0.00 0.00 0.00 3.01
579 617 2.095372 CCGGGCGAGTCTGTTTTAAATC 59.905 50.000 0.00 0.00 0.00 2.17
580 618 2.081462 CCGGGCGAGTCTGTTTTAAAT 58.919 47.619 0.00 0.00 0.00 1.40
581 619 1.070445 TCCGGGCGAGTCTGTTTTAAA 59.930 47.619 0.00 0.00 0.00 1.52
582 620 0.680618 TCCGGGCGAGTCTGTTTTAA 59.319 50.000 0.00 0.00 0.00 1.52
583 621 0.037975 GTCCGGGCGAGTCTGTTTTA 60.038 55.000 0.00 0.00 0.00 1.52
584 622 1.301479 GTCCGGGCGAGTCTGTTTT 60.301 57.895 0.00 0.00 0.00 2.43
585 623 2.342648 GTCCGGGCGAGTCTGTTT 59.657 61.111 0.00 0.00 0.00 2.83
586 624 4.052229 CGTCCGGGCGAGTCTGTT 62.052 66.667 27.65 0.00 0.00 3.16
590 628 3.871248 AAAACCGTCCGGGCGAGTC 62.871 63.158 33.61 0.00 40.62 3.36
591 629 3.465258 AAAAACCGTCCGGGCGAGT 62.465 57.895 33.61 23.26 40.62 4.18
592 630 2.667199 AAAAACCGTCCGGGCGAG 60.667 61.111 33.61 22.52 40.62 5.03
609 647 6.293407 GCTTGTGTCTGTACTGATGCTAAAAA 60.293 38.462 5.69 0.00 0.00 1.94
610 648 5.179368 GCTTGTGTCTGTACTGATGCTAAAA 59.821 40.000 5.69 0.00 0.00 1.52
611 649 4.690748 GCTTGTGTCTGTACTGATGCTAAA 59.309 41.667 5.69 0.00 0.00 1.85
612 650 4.245660 GCTTGTGTCTGTACTGATGCTAA 58.754 43.478 5.69 0.07 0.00 3.09
613 651 3.368427 GGCTTGTGTCTGTACTGATGCTA 60.368 47.826 5.69 0.00 0.00 3.49
614 652 2.613977 GGCTTGTGTCTGTACTGATGCT 60.614 50.000 5.69 0.00 0.00 3.79
615 653 1.734465 GGCTTGTGTCTGTACTGATGC 59.266 52.381 5.69 6.07 0.00 3.91
616 654 2.998670 CTGGCTTGTGTCTGTACTGATG 59.001 50.000 5.69 0.00 0.00 3.07
617 655 2.027745 CCTGGCTTGTGTCTGTACTGAT 60.028 50.000 5.69 0.00 0.00 2.90
618 656 1.344438 CCTGGCTTGTGTCTGTACTGA 59.656 52.381 0.00 0.00 0.00 3.41
619 657 1.344438 TCCTGGCTTGTGTCTGTACTG 59.656 52.381 0.00 0.00 0.00 2.74
620 658 1.717032 TCCTGGCTTGTGTCTGTACT 58.283 50.000 0.00 0.00 0.00 2.73
621 659 2.543777 TTCCTGGCTTGTGTCTGTAC 57.456 50.000 0.00 0.00 0.00 2.90
622 660 3.838317 AGTATTCCTGGCTTGTGTCTGTA 59.162 43.478 0.00 0.00 0.00 2.74
623 661 2.639839 AGTATTCCTGGCTTGTGTCTGT 59.360 45.455 0.00 0.00 0.00 3.41
624 662 3.005554 CAGTATTCCTGGCTTGTGTCTG 58.994 50.000 0.00 0.00 37.54 3.51
625 663 2.616510 GCAGTATTCCTGGCTTGTGTCT 60.617 50.000 0.00 0.00 41.81 3.41
626 664 1.740025 GCAGTATTCCTGGCTTGTGTC 59.260 52.381 0.00 0.00 41.81 3.67
627 665 1.826385 GCAGTATTCCTGGCTTGTGT 58.174 50.000 0.00 0.00 41.81 3.72
628 666 0.729116 CGCAGTATTCCTGGCTTGTG 59.271 55.000 0.00 0.00 41.81 3.33
629 667 0.613260 TCGCAGTATTCCTGGCTTGT 59.387 50.000 0.00 0.00 41.81 3.16
630 668 1.293924 CTCGCAGTATTCCTGGCTTG 58.706 55.000 0.00 0.00 41.81 4.01
631 669 0.462759 GCTCGCAGTATTCCTGGCTT 60.463 55.000 0.00 0.00 41.81 4.35
632 670 1.144936 GCTCGCAGTATTCCTGGCT 59.855 57.895 0.00 0.00 41.81 4.75
633 671 1.153369 TGCTCGCAGTATTCCTGGC 60.153 57.895 0.00 0.00 41.81 4.85
634 672 0.811616 GGTGCTCGCAGTATTCCTGG 60.812 60.000 0.00 0.00 41.81 4.45
635 673 0.108186 TGGTGCTCGCAGTATTCCTG 60.108 55.000 0.00 0.00 44.53 3.86
636 674 0.176680 CTGGTGCTCGCAGTATTCCT 59.823 55.000 0.00 0.00 0.00 3.36
637 675 0.811616 CCTGGTGCTCGCAGTATTCC 60.812 60.000 0.00 0.00 0.00 3.01
638 676 0.175760 TCCTGGTGCTCGCAGTATTC 59.824 55.000 0.00 0.00 0.00 1.75
639 677 0.833287 ATCCTGGTGCTCGCAGTATT 59.167 50.000 0.00 0.00 0.00 1.89
640 678 0.833287 AATCCTGGTGCTCGCAGTAT 59.167 50.000 0.00 0.00 0.00 2.12
641 679 0.613260 AAATCCTGGTGCTCGCAGTA 59.387 50.000 0.00 0.00 0.00 2.74
642 680 0.613260 TAAATCCTGGTGCTCGCAGT 59.387 50.000 0.00 0.00 0.00 4.40
643 681 1.737838 TTAAATCCTGGTGCTCGCAG 58.262 50.000 0.00 0.00 0.00 5.18
644 682 1.810151 GTTTAAATCCTGGTGCTCGCA 59.190 47.619 0.00 0.00 0.00 5.10
645 683 1.132453 GGTTTAAATCCTGGTGCTCGC 59.868 52.381 0.00 0.00 0.00 5.03
646 684 1.743394 GGGTTTAAATCCTGGTGCTCG 59.257 52.381 10.45 0.00 0.00 5.03
647 685 3.087370 AGGGTTTAAATCCTGGTGCTC 57.913 47.619 19.53 0.00 38.36 4.26
665 703 3.380471 TGGTATTTCCAACCCATCAGG 57.620 47.619 0.00 0.00 44.12 3.86
672 710 6.578307 AGGTGGACAGTGGTATTTCCAACC 62.578 50.000 10.36 9.49 45.62 3.77
675 713 2.344592 AGGTGGACAGTGGTATTTCCA 58.655 47.619 0.00 0.00 45.01 3.53
676 714 4.259356 GTTAGGTGGACAGTGGTATTTCC 58.741 47.826 0.00 0.00 0.00 3.13
677 715 4.259356 GGTTAGGTGGACAGTGGTATTTC 58.741 47.826 0.00 0.00 0.00 2.17
678 716 3.653836 TGGTTAGGTGGACAGTGGTATTT 59.346 43.478 0.00 0.00 0.00 1.40
679 717 3.253220 TGGTTAGGTGGACAGTGGTATT 58.747 45.455 0.00 0.00 0.00 1.89
680 718 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
681 719 2.369532 GTTGGTTAGGTGGACAGTGGTA 59.630 50.000 0.00 0.00 0.00 3.25
682 720 1.142262 GTTGGTTAGGTGGACAGTGGT 59.858 52.381 0.00 0.00 0.00 4.16
683 721 1.420138 AGTTGGTTAGGTGGACAGTGG 59.580 52.381 0.00 0.00 0.00 4.00
684 722 2.930826 AGTTGGTTAGGTGGACAGTG 57.069 50.000 0.00 0.00 0.00 3.66
685 723 4.445305 GGTTAAGTTGGTTAGGTGGACAGT 60.445 45.833 0.00 0.00 0.00 3.55
686 724 4.070009 GGTTAAGTTGGTTAGGTGGACAG 58.930 47.826 0.00 0.00 0.00 3.51
687 725 3.458857 TGGTTAAGTTGGTTAGGTGGACA 59.541 43.478 0.00 0.00 0.00 4.02
688 726 3.817084 GTGGTTAAGTTGGTTAGGTGGAC 59.183 47.826 0.00 0.00 0.00 4.02
689 727 3.458857 TGTGGTTAAGTTGGTTAGGTGGA 59.541 43.478 0.00 0.00 0.00 4.02
690 728 3.818773 CTGTGGTTAAGTTGGTTAGGTGG 59.181 47.826 0.00 0.00 0.00 4.61
691 729 3.818773 CCTGTGGTTAAGTTGGTTAGGTG 59.181 47.826 0.00 0.00 0.00 4.00
692 730 3.460712 ACCTGTGGTTAAGTTGGTTAGGT 59.539 43.478 0.00 0.00 27.29 3.08
693 731 4.094830 ACCTGTGGTTAAGTTGGTTAGG 57.905 45.455 0.00 0.00 27.29 2.69
694 732 5.127491 TCAACCTGTGGTTAAGTTGGTTAG 58.873 41.667 1.34 0.00 45.01 2.34
695 733 5.113446 TCAACCTGTGGTTAAGTTGGTTA 57.887 39.130 1.34 0.00 45.01 2.85
696 734 3.970842 TCAACCTGTGGTTAAGTTGGTT 58.029 40.909 1.34 0.00 45.01 3.67
697 735 3.655615 TCAACCTGTGGTTAAGTTGGT 57.344 42.857 1.34 0.00 45.01 3.67
698 736 4.320202 CGAATCAACCTGTGGTTAAGTTGG 60.320 45.833 1.34 0.00 45.01 3.77
699 737 4.783242 CGAATCAACCTGTGGTTAAGTTG 58.217 43.478 1.34 0.00 45.01 3.16
700 738 3.252458 GCGAATCAACCTGTGGTTAAGTT 59.748 43.478 1.34 0.00 45.01 2.66
701 739 2.812011 GCGAATCAACCTGTGGTTAAGT 59.188 45.455 1.34 0.00 45.01 2.24
702 740 2.159707 CGCGAATCAACCTGTGGTTAAG 60.160 50.000 0.00 0.00 45.01 1.85
703 741 1.801771 CGCGAATCAACCTGTGGTTAA 59.198 47.619 0.00 0.00 45.01 2.01
704 742 1.001068 TCGCGAATCAACCTGTGGTTA 59.999 47.619 6.20 0.00 45.01 2.85
706 744 0.949105 GTCGCGAATCAACCTGTGGT 60.949 55.000 12.06 0.00 37.65 4.16
707 745 0.670546 AGTCGCGAATCAACCTGTGG 60.671 55.000 12.06 0.00 0.00 4.17
708 746 0.716108 GAGTCGCGAATCAACCTGTG 59.284 55.000 29.58 0.00 0.00 3.66
709 747 0.732880 CGAGTCGCGAATCAACCTGT 60.733 55.000 32.41 0.50 44.57 4.00
710 748 1.991430 CGAGTCGCGAATCAACCTG 59.009 57.895 32.41 14.72 44.57 4.00
711 749 1.805945 GCGAGTCGCGAATCAACCT 60.806 57.895 32.41 15.48 44.55 3.50
712 750 2.695646 GCGAGTCGCGAATCAACC 59.304 61.111 32.41 17.95 44.55 3.77
739 777 4.380550 GGTCCCCTAAAATTTTGCTTCTCG 60.381 45.833 13.76 0.00 0.00 4.04
756 794 1.003718 GGCATATGTAGCGGTCCCC 60.004 63.158 4.29 0.00 0.00 4.81
821 859 2.694760 CCTTTCGGAAGCAGGCTGC 61.695 63.158 31.56 31.56 45.46 5.25
864 906 5.243954 AGAAGCAGGATTAGTTTTTGGTTCC 59.756 40.000 10.09 0.00 43.52 3.62
1032 1074 1.573829 GGCTGTCGATGCCGTGAAAA 61.574 55.000 14.98 0.00 41.03 2.29
1298 1346 3.175240 CCAGCACGCTCGAAGACG 61.175 66.667 0.00 1.08 41.26 4.18
1299 1347 3.482783 GCCAGCACGCTCGAAGAC 61.483 66.667 0.00 0.00 0.00 3.01
1300 1348 3.633094 GAGCCAGCACGCTCGAAGA 62.633 63.158 9.02 0.00 45.39 2.87
1301 1349 3.184683 GAGCCAGCACGCTCGAAG 61.185 66.667 9.02 0.00 45.39 3.79
1393 1442 9.798994 ACAAGTTAAAAGATACATACTAGTCCG 57.201 33.333 0.00 0.00 0.00 4.79
1413 1622 3.509575 TGAAACACAGAGCCAAACAAGTT 59.490 39.130 0.00 0.00 0.00 2.66
1452 3097 2.541178 CCTCGTAACAGTATCTGCGTCC 60.541 54.545 0.00 0.00 34.37 4.79
1481 3126 4.827284 CCGTATTGCCCAAATCTTATCCTT 59.173 41.667 0.00 0.00 0.00 3.36
1555 3200 2.213499 GAGGCCCGTACAAATCTGATG 58.787 52.381 0.00 0.00 0.00 3.07
1646 3293 5.011329 ACATCATGGTCTTTTGATTGCACTT 59.989 36.000 0.00 0.00 30.24 3.16
1766 3413 8.697846 TTAACTAGTATGATGGACAAGAAACG 57.302 34.615 0.00 0.00 0.00 3.60
1791 3439 3.788227 TTGGATAACTGGTTCAGCACT 57.212 42.857 0.00 0.00 34.37 4.40
1855 3503 4.708177 CACCCATAAAGTCATCTACCAGG 58.292 47.826 0.00 0.00 0.00 4.45
1895 3543 2.328099 CGAAGTTGGCTGGCTCACC 61.328 63.158 2.00 0.00 0.00 4.02
2033 3681 5.428496 TTGAACAAATCAGACTCTTGCAG 57.572 39.130 0.00 0.00 39.77 4.41
2035 3683 7.540055 CCTTAATTGAACAAATCAGACTCTTGC 59.460 37.037 0.00 0.00 39.77 4.01
2043 3691 8.946085 TGTAGTAGCCTTAATTGAACAAATCAG 58.054 33.333 0.00 0.00 39.77 2.90
2084 3732 6.202379 GGCAGATAAGGTTTTATCGGAGTTAC 59.798 42.308 10.29 0.00 46.39 2.50
2200 3848 6.258068 GCTTTAGTAATACAATTCTGCCGTCT 59.742 38.462 0.00 0.00 0.00 4.18
2204 3852 7.535139 TGTTGCTTTAGTAATACAATTCTGCC 58.465 34.615 0.00 0.00 0.00 4.85
2230 3879 7.283625 TGGATTTTAGTTGCAACATTACACT 57.716 32.000 30.11 11.14 0.00 3.55
2323 3981 8.361139 GGCTTCTATTACTCAGCTTATGTTCTA 58.639 37.037 0.00 0.00 32.52 2.10
2325 3983 6.986817 TGGCTTCTATTACTCAGCTTATGTTC 59.013 38.462 0.00 0.00 32.52 3.18
2342 4000 6.707290 TGTGCTAAGTTATCTTTGGCTTCTA 58.293 36.000 10.43 0.00 35.36 2.10
2347 4005 6.038714 AGCTTATGTGCTAAGTTATCTTTGGC 59.961 38.462 0.00 0.00 42.10 4.52
2377 4037 5.067273 CACCAAAGGTACAATTGTCCAGTA 58.933 41.667 15.85 0.00 32.11 2.74
2417 5749 0.478072 TGGTTCTCCCATTGCTGTGT 59.522 50.000 0.00 0.00 38.72 3.72
2495 6259 2.751913 GCAGTAGCAGCAGCAGCAG 61.752 63.158 12.92 0.00 45.49 4.24
2496 6260 1.891722 TAGCAGTAGCAGCAGCAGCA 61.892 55.000 12.92 0.00 45.49 4.41
2497 6261 1.153489 TAGCAGTAGCAGCAGCAGC 60.153 57.895 3.17 0.46 45.49 5.25
2498 6262 0.175302 AGTAGCAGTAGCAGCAGCAG 59.825 55.000 3.17 0.00 45.49 4.24
2499 6263 0.108472 CAGTAGCAGTAGCAGCAGCA 60.108 55.000 3.17 0.00 45.49 4.41
2500 6264 1.427592 GCAGTAGCAGTAGCAGCAGC 61.428 60.000 0.00 0.00 45.49 5.25
2501 6265 0.175302 AGCAGTAGCAGTAGCAGCAG 59.825 55.000 0.00 0.00 45.49 4.24
2502 6266 1.135139 GTAGCAGTAGCAGTAGCAGCA 59.865 52.381 0.00 0.00 45.49 4.41
2503 6267 1.407258 AGTAGCAGTAGCAGTAGCAGC 59.593 52.381 0.00 0.00 45.49 5.25
2504 6268 3.880490 AGTAGTAGCAGTAGCAGTAGCAG 59.120 47.826 0.00 0.00 45.49 4.24
2505 6269 3.887352 AGTAGTAGCAGTAGCAGTAGCA 58.113 45.455 0.00 0.00 45.49 3.49
2506 6270 6.563222 AATAGTAGTAGCAGTAGCAGTAGC 57.437 41.667 0.00 0.00 45.49 3.58
2507 6271 9.275398 ACTTAATAGTAGTAGCAGTAGCAGTAG 57.725 37.037 0.00 0.00 36.52 2.57
2508 6272 9.624373 AACTTAATAGTAGTAGCAGTAGCAGTA 57.376 33.333 0.00 0.00 37.31 2.74
3089 6859 4.646572 CCTGCTTTATACCTTGATCCCTC 58.353 47.826 0.00 0.00 0.00 4.30
3100 6870 2.755103 AGCAAAGTGGCCTGCTTTATAC 59.245 45.455 20.13 14.43 46.71 1.47
3161 6931 6.657541 TGGCCACCTAAAAATACAAGTTCTAG 59.342 38.462 0.00 0.00 0.00 2.43
3215 6994 7.535997 GTGTACCCTTTGTATTTTCCTCATTC 58.464 38.462 0.00 0.00 0.00 2.67
3261 7040 5.930135 AGTCGTCATGCTATAAGGGATTTT 58.070 37.500 0.00 0.00 0.00 1.82
3264 7043 5.047235 GGTAAGTCGTCATGCTATAAGGGAT 60.047 44.000 0.00 0.00 0.00 3.85
3265 7044 4.280174 GGTAAGTCGTCATGCTATAAGGGA 59.720 45.833 0.00 0.00 0.00 4.20
3267 7046 4.023450 TCGGTAAGTCGTCATGCTATAAGG 60.023 45.833 0.00 0.00 0.00 2.69
3268 7047 4.910456 GTCGGTAAGTCGTCATGCTATAAG 59.090 45.833 0.00 0.00 0.00 1.73
3269 7048 4.577693 AGTCGGTAAGTCGTCATGCTATAA 59.422 41.667 0.00 0.00 0.00 0.98
3270 7049 4.024302 CAGTCGGTAAGTCGTCATGCTATA 60.024 45.833 0.00 0.00 0.00 1.31
3271 7050 2.950309 AGTCGGTAAGTCGTCATGCTAT 59.050 45.455 0.00 0.00 0.00 2.97
3295 8416 3.318557 CCGGGCAAACCTTGTTTTAGTAA 59.681 43.478 0.00 0.00 36.97 2.24
3301 8422 1.744320 GAGCCGGGCAAACCTTGTTT 61.744 55.000 23.09 0.00 36.97 2.83
3307 8428 4.660938 ACTGGAGCCGGGCAAACC 62.661 66.667 23.09 20.26 0.00 3.27
3322 8443 2.430610 GCATCGCCTCTCCCTCACT 61.431 63.158 0.00 0.00 0.00 3.41
3323 8444 2.107953 GCATCGCCTCTCCCTCAC 59.892 66.667 0.00 0.00 0.00 3.51
3324 8445 3.157252 GGCATCGCCTCTCCCTCA 61.157 66.667 0.00 0.00 46.69 3.86
3353 8483 2.896243 ACGACGACTACAAGCACTAG 57.104 50.000 0.00 0.00 0.00 2.57
3354 8484 3.996363 TCTAACGACGACTACAAGCACTA 59.004 43.478 0.00 0.00 0.00 2.74
3359 8489 4.142752 TGGTCATCTAACGACGACTACAAG 60.143 45.833 0.00 0.00 33.14 3.16
3370 8500 0.179084 ATGCCCGTGGTCATCTAACG 60.179 55.000 0.00 0.00 37.07 3.18
3386 8517 7.561251 AGGGGTAATAAAAATTACAACCATGC 58.439 34.615 16.66 0.00 38.43 4.06
3424 8555 6.519382 TCTATTCATCTTCAATCATCGCAGT 58.481 36.000 0.00 0.00 0.00 4.40
3473 8604 0.753479 ACACGGCCAAACCAACATGA 60.753 50.000 2.24 0.00 39.03 3.07
3489 8620 5.871524 TCTCATGCACATAGAGAAAGAACAC 59.128 40.000 7.34 0.00 35.62 3.32
3503 8634 8.665685 CATACGTACTATATACTCTCATGCACA 58.334 37.037 0.00 0.00 0.00 4.57
3517 8648 5.300034 CCACCCTTGTCACATACGTACTATA 59.700 44.000 0.00 0.00 0.00 1.31
3541 8672 6.183360 ACAAGTTTTGTAGTACAAGAAAGGGC 60.183 38.462 15.06 0.33 43.27 5.19
3567 8698 1.674359 TTTCCCGCGAATACATGCAT 58.326 45.000 8.23 0.00 0.00 3.96
3581 8712 2.966050 TGCACACAAGTTGTTTTTCCC 58.034 42.857 5.57 0.00 35.67 3.97
3583 8714 6.175087 CGTTTATGCACACAAGTTGTTTTTC 58.825 36.000 5.57 0.00 35.67 2.29
3620 8751 0.030235 CGCCATTGACGTATCCTCGA 59.970 55.000 0.00 0.00 34.70 4.04
3621 8752 0.248907 ACGCCATTGACGTATCCTCG 60.249 55.000 0.00 0.00 43.02 4.63
3651 8782 9.370930 TCGGTAATTAACATTCTCCCTTCTATA 57.629 33.333 0.64 0.00 0.00 1.31
3652 8783 8.258850 TCGGTAATTAACATTCTCCCTTCTAT 57.741 34.615 0.64 0.00 0.00 1.98
3655 8786 7.619964 TTTCGGTAATTAACATTCTCCCTTC 57.380 36.000 0.64 0.00 0.00 3.46
3684 8815 6.381801 CCCTATTTATAAAGCATGGCGAAAG 58.618 40.000 3.94 0.00 0.00 2.62
3685 8816 5.278758 GCCCTATTTATAAAGCATGGCGAAA 60.279 40.000 12.31 0.00 0.00 3.46
3686 8817 4.217550 GCCCTATTTATAAAGCATGGCGAA 59.782 41.667 12.31 0.00 0.00 4.70
3687 8818 3.756434 GCCCTATTTATAAAGCATGGCGA 59.244 43.478 12.31 0.00 0.00 5.54
3688 8819 3.505680 TGCCCTATTTATAAAGCATGGCG 59.494 43.478 18.29 8.30 39.19 5.69
3689 8820 4.619160 GCTGCCCTATTTATAAAGCATGGC 60.619 45.833 17.40 17.40 36.90 4.40
3690 8821 4.523943 TGCTGCCCTATTTATAAAGCATGG 59.476 41.667 9.50 6.08 34.46 3.66
3691 8822 5.242393 AGTGCTGCCCTATTTATAAAGCATG 59.758 40.000 9.50 6.39 40.87 4.06
3692 8823 5.388654 AGTGCTGCCCTATTTATAAAGCAT 58.611 37.500 9.50 0.00 40.87 3.79
3693 8824 4.792068 AGTGCTGCCCTATTTATAAAGCA 58.208 39.130 3.94 6.84 36.88 3.91
3694 8825 5.412904 CCTAGTGCTGCCCTATTTATAAAGC 59.587 44.000 3.94 2.47 0.00 3.51
3695 8826 5.412904 GCCTAGTGCTGCCCTATTTATAAAG 59.587 44.000 3.94 0.00 36.87 1.85
3696 8827 5.313712 GCCTAGTGCTGCCCTATTTATAAA 58.686 41.667 0.00 0.00 36.87 1.40
3697 8828 4.562757 CGCCTAGTGCTGCCCTATTTATAA 60.563 45.833 0.00 0.00 38.05 0.98
3698 8829 3.056107 CGCCTAGTGCTGCCCTATTTATA 60.056 47.826 0.00 0.00 38.05 0.98
3699 8830 2.289694 CGCCTAGTGCTGCCCTATTTAT 60.290 50.000 0.00 0.00 38.05 1.40
3700 8831 1.070134 CGCCTAGTGCTGCCCTATTTA 59.930 52.381 0.00 0.00 38.05 1.40
3701 8832 0.179045 CGCCTAGTGCTGCCCTATTT 60.179 55.000 0.00 0.00 38.05 1.40
3702 8833 1.447643 CGCCTAGTGCTGCCCTATT 59.552 57.895 0.00 0.00 38.05 1.73
3703 8834 3.142393 CGCCTAGTGCTGCCCTAT 58.858 61.111 0.00 0.00 38.05 2.57
3704 8835 3.849951 GCGCCTAGTGCTGCCCTA 61.850 66.667 0.00 0.00 38.05 3.53
3806 8937 9.681062 TGAAGTGGATAAGGTAAGGAAAAATAG 57.319 33.333 0.00 0.00 0.00 1.73
3807 8938 9.681062 CTGAAGTGGATAAGGTAAGGAAAAATA 57.319 33.333 0.00 0.00 0.00 1.40
3808 8939 7.122799 GCTGAAGTGGATAAGGTAAGGAAAAAT 59.877 37.037 0.00 0.00 0.00 1.82
3830 8976 1.543607 CTCCTCTCTCTGTGTGCTGA 58.456 55.000 0.00 0.00 0.00 4.26
3867 9022 0.037790 TCGTTGTCACGCATCCATGA 60.038 50.000 0.00 0.00 46.70 3.07
3915 9070 3.429141 GCGAGGACGACGAGGACA 61.429 66.667 0.00 0.00 42.66 4.02
4206 9397 2.821378 CCAGTCAATCATTGGTGAAGCA 59.179 45.455 0.00 0.00 38.01 3.91
4209 9400 3.826157 GGAACCAGTCAATCATTGGTGAA 59.174 43.478 0.00 0.00 44.15 3.18
4375 9572 3.746940 TGTAGTTTTTGCTACACCCTCC 58.253 45.455 2.24 0.00 44.27 4.30
4475 10901 2.031508 ACCGGTGATTTGTTTTGCTACG 60.032 45.455 6.12 0.00 0.00 3.51
4704 11144 6.072112 TCCATGTAGAAAAGTTTCAACAGC 57.928 37.500 6.56 0.00 39.61 4.40
4774 11216 4.629634 ACGATGACAACGATGATTTTGCTA 59.370 37.500 12.41 0.00 34.70 3.49
4784 11226 0.861866 CTCGCGACGATGACAACGAT 60.862 55.000 12.41 0.00 34.61 3.73
4864 11306 1.892209 CAAGGGGAAGCTACAAACGT 58.108 50.000 0.00 0.00 0.00 3.99
4867 11309 1.144913 ACAGCAAGGGGAAGCTACAAA 59.855 47.619 0.00 0.00 39.50 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.