Multiple sequence alignment - TraesCS1A01G087100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G087100 | chr1A | 100.000 | 6111 | 0 | 0 | 1 | 6111 | 73357144 | 73351034 | 0.000000e+00 | 11285.0 |
1 | TraesCS1A01G087100 | chr1A | 84.977 | 426 | 51 | 11 | 5693 | 6110 | 572220762 | 572220342 | 2.630000e-113 | 420.0 |
2 | TraesCS1A01G087100 | chr1A | 78.056 | 360 | 71 | 5 | 3817 | 4171 | 58953264 | 58952908 | 2.870000e-53 | 220.0 |
3 | TraesCS1A01G087100 | chr1A | 84.722 | 144 | 22 | 0 | 1147 | 1290 | 180959544 | 180959687 | 1.780000e-30 | 145.0 |
4 | TraesCS1A01G087100 | chr1A | 90.361 | 83 | 7 | 1 | 569 | 650 | 147365879 | 147365961 | 2.330000e-19 | 108.0 |
5 | TraesCS1A01G087100 | chr1A | 90.244 | 82 | 7 | 1 | 569 | 650 | 479148007 | 479147927 | 8.380000e-19 | 106.0 |
6 | TraesCS1A01G087100 | chr1B | 91.438 | 1565 | 64 | 20 | 649 | 2178 | 117393350 | 117391821 | 0.000000e+00 | 2084.0 |
7 | TraesCS1A01G087100 | chr1B | 91.603 | 917 | 39 | 15 | 4422 | 5310 | 117386879 | 117385973 | 0.000000e+00 | 1232.0 |
8 | TraesCS1A01G087100 | chr1B | 90.959 | 365 | 22 | 9 | 5709 | 6070 | 117378786 | 117378430 | 1.190000e-131 | 481.0 |
9 | TraesCS1A01G087100 | chr1B | 88.141 | 312 | 32 | 5 | 3 | 310 | 117394396 | 117394086 | 3.480000e-97 | 366.0 |
10 | TraesCS1A01G087100 | chr1B | 73.476 | 935 | 179 | 40 | 3266 | 4179 | 639089190 | 639090076 | 7.750000e-74 | 289.0 |
11 | TraesCS1A01G087100 | chr1B | 92.929 | 198 | 10 | 2 | 5294 | 5491 | 117386024 | 117385831 | 1.000000e-72 | 285.0 |
12 | TraesCS1A01G087100 | chr1B | 90.291 | 206 | 20 | 0 | 1227 | 1432 | 639094267 | 639094472 | 2.810000e-68 | 270.0 |
13 | TraesCS1A01G087100 | chr1B | 90.476 | 147 | 14 | 0 | 1429 | 1575 | 639096976 | 639097122 | 1.740000e-45 | 195.0 |
14 | TraesCS1A01G087100 | chr1B | 92.647 | 136 | 3 | 6 | 5475 | 5608 | 117378930 | 117378800 | 8.090000e-44 | 189.0 |
15 | TraesCS1A01G087100 | chr1B | 93.388 | 121 | 7 | 1 | 449 | 569 | 117393815 | 117393696 | 1.750000e-40 | 178.0 |
16 | TraesCS1A01G087100 | chr1B | 97.727 | 88 | 0 | 2 | 5602 | 5688 | 430149193 | 430149107 | 3.820000e-32 | 150.0 |
17 | TraesCS1A01G087100 | chr1B | 98.765 | 81 | 1 | 0 | 5608 | 5688 | 66942101 | 66942181 | 1.780000e-30 | 145.0 |
18 | TraesCS1A01G087100 | chr1B | 82.171 | 129 | 14 | 3 | 332 | 457 | 117394036 | 117393914 | 1.080000e-17 | 102.0 |
19 | TraesCS1A01G087100 | chr1B | 97.561 | 41 | 1 | 0 | 2163 | 2203 | 117390227 | 117390187 | 3.060000e-08 | 71.3 |
20 | TraesCS1A01G087100 | chr1D | 90.546 | 1502 | 58 | 27 | 651 | 2090 | 73987962 | 73986483 | 0.000000e+00 | 1910.0 |
21 | TraesCS1A01G087100 | chr1D | 85.784 | 823 | 94 | 13 | 3084 | 3890 | 19759404 | 19758589 | 0.000000e+00 | 850.0 |
22 | TraesCS1A01G087100 | chr1D | 93.870 | 522 | 23 | 3 | 4398 | 4914 | 73983580 | 73983063 | 0.000000e+00 | 778.0 |
23 | TraesCS1A01G087100 | chr1D | 82.826 | 821 | 113 | 15 | 2288 | 3086 | 19761433 | 19760619 | 0.000000e+00 | 710.0 |
24 | TraesCS1A01G087100 | chr1D | 95.214 | 397 | 10 | 2 | 4915 | 5311 | 73983026 | 73982639 | 2.420000e-173 | 619.0 |
25 | TraesCS1A01G087100 | chr1D | 88.506 | 435 | 32 | 9 | 5688 | 6111 | 73980854 | 73980427 | 1.520000e-140 | 510.0 |
26 | TraesCS1A01G087100 | chr1D | 94.972 | 179 | 7 | 2 | 5320 | 5498 | 73982668 | 73982492 | 4.660000e-71 | 279.0 |
27 | TraesCS1A01G087100 | chr1D | 95.506 | 89 | 2 | 2 | 5600 | 5688 | 198935016 | 198934930 | 2.300000e-29 | 141.0 |
28 | TraesCS1A01G087100 | chr1D | 89.873 | 79 | 8 | 0 | 569 | 647 | 37416365 | 37416443 | 1.080000e-17 | 102.0 |
29 | TraesCS1A01G087100 | chr1D | 89.831 | 59 | 6 | 0 | 4181 | 4239 | 276797377 | 276797435 | 6.570000e-10 | 76.8 |
30 | TraesCS1A01G087100 | chr1D | 89.831 | 59 | 6 | 0 | 4181 | 4239 | 421214357 | 421214299 | 6.570000e-10 | 76.8 |
31 | TraesCS1A01G087100 | chr1D | 84.000 | 75 | 10 | 2 | 4181 | 4255 | 3768420 | 3768348 | 3.060000e-08 | 71.3 |
32 | TraesCS1A01G087100 | chr6A | 80.807 | 1115 | 182 | 20 | 2851 | 3948 | 593569974 | 593571073 | 0.000000e+00 | 845.0 |
33 | TraesCS1A01G087100 | chr6A | 83.846 | 130 | 19 | 2 | 4230 | 4358 | 596907300 | 596907428 | 8.320000e-24 | 122.0 |
34 | TraesCS1A01G087100 | chr6A | 91.111 | 90 | 5 | 3 | 569 | 657 | 583146179 | 583146266 | 1.080000e-22 | 119.0 |
35 | TraesCS1A01G087100 | chr7D | 78.175 | 1260 | 232 | 29 | 2925 | 4157 | 607114521 | 607115764 | 0.000000e+00 | 763.0 |
36 | TraesCS1A01G087100 | chr7D | 78.541 | 1179 | 203 | 28 | 3028 | 4179 | 242411173 | 242412328 | 0.000000e+00 | 730.0 |
37 | TraesCS1A01G087100 | chr7D | 96.512 | 86 | 1 | 2 | 5603 | 5688 | 419879412 | 419879329 | 2.300000e-29 | 141.0 |
38 | TraesCS1A01G087100 | chr7D | 80.311 | 193 | 31 | 6 | 3966 | 4154 | 510004208 | 510004397 | 8.260000e-29 | 139.0 |
39 | TraesCS1A01G087100 | chr7D | 89.744 | 78 | 8 | 0 | 570 | 647 | 468290608 | 468290531 | 3.900000e-17 | 100.0 |
40 | TraesCS1A01G087100 | chrUn | 80.753 | 956 | 151 | 15 | 3222 | 4154 | 29317593 | 29316648 | 0.000000e+00 | 715.0 |
41 | TraesCS1A01G087100 | chrUn | 87.458 | 295 | 33 | 4 | 2288 | 2578 | 461463864 | 461463570 | 2.730000e-88 | 337.0 |
42 | TraesCS1A01G087100 | chr4B | 80.737 | 950 | 149 | 16 | 3222 | 4148 | 668409055 | 668409993 | 0.000000e+00 | 710.0 |
43 | TraesCS1A01G087100 | chr4B | 85.782 | 422 | 41 | 12 | 5698 | 6110 | 468254521 | 468254110 | 4.380000e-116 | 429.0 |
44 | TraesCS1A01G087100 | chr4B | 78.454 | 608 | 99 | 24 | 2287 | 2867 | 21207261 | 21206659 | 9.680000e-98 | 368.0 |
45 | TraesCS1A01G087100 | chr2D | 82.254 | 834 | 133 | 9 | 3341 | 4165 | 324047442 | 324046615 | 0.000000e+00 | 706.0 |
46 | TraesCS1A01G087100 | chr2D | 84.634 | 423 | 55 | 9 | 5697 | 6111 | 589507601 | 589508021 | 4.410000e-111 | 412.0 |
47 | TraesCS1A01G087100 | chr2D | 87.705 | 122 | 15 | 0 | 4560 | 4681 | 403502170 | 403502291 | 6.390000e-30 | 143.0 |
48 | TraesCS1A01G087100 | chr2D | 95.455 | 88 | 2 | 2 | 5601 | 5688 | 206683065 | 206682980 | 8.260000e-29 | 139.0 |
49 | TraesCS1A01G087100 | chr2D | 89.831 | 59 | 6 | 0 | 4181 | 4239 | 10206210 | 10206152 | 6.570000e-10 | 76.8 |
50 | TraesCS1A01G087100 | chr5B | 80.515 | 893 | 136 | 19 | 3222 | 4089 | 704832175 | 704833054 | 0.000000e+00 | 651.0 |
51 | TraesCS1A01G087100 | chr5B | 84.016 | 488 | 64 | 5 | 2848 | 3334 | 465602220 | 465601746 | 2.010000e-124 | 457.0 |
52 | TraesCS1A01G087100 | chr3A | 78.593 | 1009 | 174 | 34 | 3180 | 4165 | 459862607 | 459863596 | 4.020000e-176 | 628.0 |
53 | TraesCS1A01G087100 | chr3A | 73.111 | 781 | 174 | 24 | 3401 | 4154 | 738200179 | 738199408 | 4.730000e-61 | 246.0 |
54 | TraesCS1A01G087100 | chr3A | 93.478 | 92 | 4 | 2 | 5598 | 5688 | 154188123 | 154188033 | 1.070000e-27 | 135.0 |
55 | TraesCS1A01G087100 | chr3A | 84.746 | 118 | 16 | 2 | 4242 | 4358 | 64320780 | 64320664 | 3.870000e-22 | 117.0 |
56 | TraesCS1A01G087100 | chr3A | 83.186 | 113 | 19 | 0 | 4240 | 4352 | 573835077 | 573834965 | 3.010000e-18 | 104.0 |
57 | TraesCS1A01G087100 | chr4A | 79.140 | 930 | 141 | 25 | 3262 | 4154 | 733877128 | 733878041 | 1.470000e-165 | 593.0 |
58 | TraesCS1A01G087100 | chr4A | 83.759 | 431 | 56 | 13 | 5688 | 6110 | 589008727 | 589008303 | 4.440000e-106 | 396.0 |
59 | TraesCS1A01G087100 | chr4A | 81.287 | 171 | 22 | 8 | 3817 | 3984 | 35629455 | 35629618 | 4.970000e-26 | 130.0 |
60 | TraesCS1A01G087100 | chr4A | 93.750 | 80 | 5 | 0 | 569 | 648 | 629512963 | 629512884 | 2.990000e-23 | 121.0 |
61 | TraesCS1A01G087100 | chr4A | 93.750 | 80 | 5 | 0 | 569 | 648 | 629518102 | 629518023 | 2.990000e-23 | 121.0 |
62 | TraesCS1A01G087100 | chr5D | 91.176 | 408 | 35 | 1 | 1068 | 1475 | 311616648 | 311616242 | 2.490000e-153 | 553.0 |
63 | TraesCS1A01G087100 | chr5D | 92.780 | 277 | 20 | 0 | 1299 | 1575 | 519217839 | 519217563 | 9.540000e-108 | 401.0 |
64 | TraesCS1A01G087100 | chr5D | 75.000 | 496 | 98 | 17 | 3688 | 4160 | 412461906 | 412462398 | 8.030000e-49 | 206.0 |
65 | TraesCS1A01G087100 | chr3B | 76.722 | 1031 | 164 | 43 | 3168 | 4164 | 2091429 | 2092417 | 7.070000e-139 | 505.0 |
66 | TraesCS1A01G087100 | chr3B | 86.054 | 294 | 38 | 3 | 2288 | 2578 | 603588054 | 603587761 | 4.600000e-81 | 313.0 |
67 | TraesCS1A01G087100 | chr3B | 90.265 | 113 | 11 | 0 | 4243 | 4355 | 224513696 | 224513584 | 1.370000e-31 | 148.0 |
68 | TraesCS1A01G087100 | chr3B | 89.076 | 119 | 11 | 2 | 4240 | 4357 | 786867456 | 786867573 | 4.940000e-31 | 147.0 |
69 | TraesCS1A01G087100 | chr4D | 80.763 | 655 | 98 | 12 | 3518 | 4150 | 91057575 | 91056927 | 2.560000e-133 | 486.0 |
70 | TraesCS1A01G087100 | chr4D | 80.672 | 595 | 87 | 15 | 3583 | 4154 | 400680781 | 400681370 | 2.620000e-118 | 436.0 |
71 | TraesCS1A01G087100 | chr4D | 78.860 | 544 | 86 | 20 | 3648 | 4171 | 121465919 | 121465385 | 2.110000e-89 | 340.0 |
72 | TraesCS1A01G087100 | chr4D | 95.455 | 88 | 2 | 2 | 5600 | 5687 | 61173305 | 61173390 | 8.260000e-29 | 139.0 |
73 | TraesCS1A01G087100 | chr4D | 84.615 | 130 | 18 | 2 | 4230 | 4358 | 88145326 | 88145454 | 1.790000e-25 | 128.0 |
74 | TraesCS1A01G087100 | chr4D | 89.831 | 59 | 6 | 0 | 4181 | 4239 | 488623337 | 488623279 | 6.570000e-10 | 76.8 |
75 | TraesCS1A01G087100 | chr4D | 100.000 | 28 | 0 | 0 | 4243 | 4270 | 503252821 | 503252794 | 1.100000e-02 | 52.8 |
76 | TraesCS1A01G087100 | chr7A | 85.321 | 436 | 49 | 11 | 5688 | 6111 | 121933981 | 121934413 | 2.620000e-118 | 436.0 |
77 | TraesCS1A01G087100 | chr7A | 85.468 | 406 | 49 | 7 | 5714 | 6110 | 56979928 | 56980332 | 1.230000e-111 | 414.0 |
78 | TraesCS1A01G087100 | chr7A | 78.680 | 591 | 97 | 18 | 3503 | 4077 | 551117 | 550540 | 3.480000e-97 | 366.0 |
79 | TraesCS1A01G087100 | chr7A | 87.458 | 295 | 33 | 4 | 2288 | 2578 | 264325008 | 264325302 | 2.730000e-88 | 337.0 |
80 | TraesCS1A01G087100 | chr7A | 85.816 | 141 | 20 | 0 | 1150 | 1290 | 19097542 | 19097402 | 3.820000e-32 | 150.0 |
81 | TraesCS1A01G087100 | chr7A | 94.565 | 92 | 4 | 1 | 5597 | 5688 | 608875210 | 608875120 | 2.300000e-29 | 141.0 |
82 | TraesCS1A01G087100 | chr6D | 89.412 | 340 | 35 | 1 | 1236 | 1575 | 13851836 | 13852174 | 1.570000e-115 | 427.0 |
83 | TraesCS1A01G087100 | chr6D | 89.831 | 59 | 6 | 0 | 4181 | 4239 | 123268111 | 123268053 | 6.570000e-10 | 76.8 |
84 | TraesCS1A01G087100 | chr6D | 88.889 | 54 | 6 | 0 | 4241 | 4294 | 319005875 | 319005928 | 3.950000e-07 | 67.6 |
85 | TraesCS1A01G087100 | chr7B | 84.149 | 429 | 50 | 14 | 5697 | 6111 | 534537343 | 534536919 | 3.430000e-107 | 399.0 |
86 | TraesCS1A01G087100 | chr2B | 78.664 | 614 | 84 | 26 | 2287 | 2867 | 597543406 | 597542807 | 1.250000e-96 | 364.0 |
87 | TraesCS1A01G087100 | chr2B | 88.699 | 292 | 31 | 2 | 2289 | 2578 | 722680631 | 722680922 | 7.530000e-94 | 355.0 |
88 | TraesCS1A01G087100 | chr2B | 87.458 | 295 | 33 | 4 | 2288 | 2578 | 690216233 | 690215939 | 2.730000e-88 | 337.0 |
89 | TraesCS1A01G087100 | chr2B | 88.618 | 123 | 14 | 0 | 4560 | 4682 | 477606355 | 477606477 | 3.820000e-32 | 150.0 |
90 | TraesCS1A01G087100 | chr2B | 89.831 | 59 | 5 | 1 | 4181 | 4239 | 659001490 | 659001433 | 2.360000e-09 | 75.0 |
91 | TraesCS1A01G087100 | chr5A | 87.119 | 295 | 34 | 4 | 2288 | 2578 | 639186143 | 639185849 | 1.270000e-86 | 331.0 |
92 | TraesCS1A01G087100 | chr5A | 86.957 | 115 | 15 | 0 | 4240 | 4354 | 451882039 | 451881925 | 4.970000e-26 | 130.0 |
93 | TraesCS1A01G087100 | chr5A | 89.744 | 78 | 8 | 0 | 568 | 645 | 266996284 | 266996207 | 3.900000e-17 | 100.0 |
94 | TraesCS1A01G087100 | chr3D | 95.628 | 183 | 8 | 0 | 1236 | 1418 | 479116865 | 479117047 | 1.670000e-75 | 294.0 |
95 | TraesCS1A01G087100 | chr3D | 95.556 | 90 | 1 | 3 | 5600 | 5688 | 207708417 | 207708330 | 2.300000e-29 | 141.0 |
96 | TraesCS1A01G087100 | chr3D | 94.286 | 35 | 2 | 0 | 1541 | 1575 | 479117347 | 479117381 | 3.000000e-03 | 54.7 |
97 | TraesCS1A01G087100 | chr2A | 95.082 | 183 | 9 | 0 | 1236 | 1418 | 712969153 | 712968971 | 7.750000e-74 | 289.0 |
98 | TraesCS1A01G087100 | chr2A | 89.431 | 123 | 13 | 0 | 4560 | 4682 | 541842355 | 541842477 | 8.200000e-34 | 156.0 |
99 | TraesCS1A01G087100 | chr2A | 92.208 | 77 | 6 | 0 | 569 | 645 | 451391977 | 451392053 | 6.480000e-20 | 110.0 |
100 | TraesCS1A01G087100 | chr2A | 93.220 | 59 | 4 | 0 | 4181 | 4239 | 53335508 | 53335566 | 3.030000e-13 | 87.9 |
101 | TraesCS1A01G087100 | chr2A | 89.655 | 58 | 6 | 0 | 4181 | 4238 | 107377061 | 107377004 | 2.360000e-09 | 75.0 |
102 | TraesCS1A01G087100 | chr2A | 96.875 | 32 | 1 | 0 | 1544 | 1575 | 712968649 | 712968618 | 3.000000e-03 | 54.7 |
103 | TraesCS1A01G087100 | chr6B | 75.646 | 271 | 44 | 15 | 3834 | 4089 | 708589297 | 708589560 | 1.390000e-21 | 115.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G087100 | chr1A | 73351034 | 73357144 | 6110 | True | 11285.0 | 11285 | 100.0000 | 1 | 6111 | 1 | chr1A.!!$R2 | 6110 |
1 | TraesCS1A01G087100 | chr1B | 117385831 | 117394396 | 8565 | True | 616.9 | 2084 | 91.0330 | 3 | 5491 | 7 | chr1B.!!$R3 | 5488 |
2 | TraesCS1A01G087100 | chr1B | 117378430 | 117378930 | 500 | True | 335.0 | 481 | 91.8030 | 5475 | 6070 | 2 | chr1B.!!$R2 | 595 |
3 | TraesCS1A01G087100 | chr1B | 639089190 | 639090076 | 886 | False | 289.0 | 289 | 73.4760 | 3266 | 4179 | 1 | chr1B.!!$F2 | 913 |
4 | TraesCS1A01G087100 | chr1B | 639094267 | 639097122 | 2855 | False | 232.5 | 270 | 90.3835 | 1227 | 1575 | 2 | chr1B.!!$F3 | 348 |
5 | TraesCS1A01G087100 | chr1D | 73980427 | 73987962 | 7535 | True | 819.2 | 1910 | 92.6216 | 651 | 6111 | 5 | chr1D.!!$R5 | 5460 |
6 | TraesCS1A01G087100 | chr1D | 19758589 | 19761433 | 2844 | True | 780.0 | 850 | 84.3050 | 2288 | 3890 | 2 | chr1D.!!$R4 | 1602 |
7 | TraesCS1A01G087100 | chr6A | 593569974 | 593571073 | 1099 | False | 845.0 | 845 | 80.8070 | 2851 | 3948 | 1 | chr6A.!!$F2 | 1097 |
8 | TraesCS1A01G087100 | chr7D | 607114521 | 607115764 | 1243 | False | 763.0 | 763 | 78.1750 | 2925 | 4157 | 1 | chr7D.!!$F3 | 1232 |
9 | TraesCS1A01G087100 | chr7D | 242411173 | 242412328 | 1155 | False | 730.0 | 730 | 78.5410 | 3028 | 4179 | 1 | chr7D.!!$F1 | 1151 |
10 | TraesCS1A01G087100 | chrUn | 29316648 | 29317593 | 945 | True | 715.0 | 715 | 80.7530 | 3222 | 4154 | 1 | chrUn.!!$R1 | 932 |
11 | TraesCS1A01G087100 | chr4B | 668409055 | 668409993 | 938 | False | 710.0 | 710 | 80.7370 | 3222 | 4148 | 1 | chr4B.!!$F1 | 926 |
12 | TraesCS1A01G087100 | chr4B | 21206659 | 21207261 | 602 | True | 368.0 | 368 | 78.4540 | 2287 | 2867 | 1 | chr4B.!!$R1 | 580 |
13 | TraesCS1A01G087100 | chr2D | 324046615 | 324047442 | 827 | True | 706.0 | 706 | 82.2540 | 3341 | 4165 | 1 | chr2D.!!$R3 | 824 |
14 | TraesCS1A01G087100 | chr5B | 704832175 | 704833054 | 879 | False | 651.0 | 651 | 80.5150 | 3222 | 4089 | 1 | chr5B.!!$F1 | 867 |
15 | TraesCS1A01G087100 | chr3A | 459862607 | 459863596 | 989 | False | 628.0 | 628 | 78.5930 | 3180 | 4165 | 1 | chr3A.!!$F1 | 985 |
16 | TraesCS1A01G087100 | chr3A | 738199408 | 738200179 | 771 | True | 246.0 | 246 | 73.1110 | 3401 | 4154 | 1 | chr3A.!!$R4 | 753 |
17 | TraesCS1A01G087100 | chr4A | 733877128 | 733878041 | 913 | False | 593.0 | 593 | 79.1400 | 3262 | 4154 | 1 | chr4A.!!$F2 | 892 |
18 | TraesCS1A01G087100 | chr3B | 2091429 | 2092417 | 988 | False | 505.0 | 505 | 76.7220 | 3168 | 4164 | 1 | chr3B.!!$F1 | 996 |
19 | TraesCS1A01G087100 | chr4D | 91056927 | 91057575 | 648 | True | 486.0 | 486 | 80.7630 | 3518 | 4150 | 1 | chr4D.!!$R1 | 632 |
20 | TraesCS1A01G087100 | chr4D | 400680781 | 400681370 | 589 | False | 436.0 | 436 | 80.6720 | 3583 | 4154 | 1 | chr4D.!!$F3 | 571 |
21 | TraesCS1A01G087100 | chr4D | 121465385 | 121465919 | 534 | True | 340.0 | 340 | 78.8600 | 3648 | 4171 | 1 | chr4D.!!$R2 | 523 |
22 | TraesCS1A01G087100 | chr7A | 550540 | 551117 | 577 | True | 366.0 | 366 | 78.6800 | 3503 | 4077 | 1 | chr7A.!!$R1 | 574 |
23 | TraesCS1A01G087100 | chr2B | 597542807 | 597543406 | 599 | True | 364.0 | 364 | 78.6640 | 2287 | 2867 | 1 | chr2B.!!$R1 | 580 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
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Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
516 | 659 | 0.248866 | AACAAACGAAGCCCGCAAAG | 60.249 | 50.0 | 0.00 | 0.0 | 43.32 | 2.77 | F |
2016 | 5000 | 0.254178 | CTCCAGCTAAGCATGGGTGT | 59.746 | 55.0 | 3.84 | 0.0 | 37.19 | 4.16 | F |
3158 | 9966 | 0.179034 | GACTGTGGATGGATCTGGCC | 60.179 | 60.0 | 0.00 | 0.0 | 0.00 | 5.36 | F |
4026 | 11616 | 0.182299 | TCATTGGAGTGGTGTGTGCA | 59.818 | 50.0 | 0.00 | 0.0 | 0.00 | 4.57 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2420 | 7956 | 0.335361 | TCCTAGAGAAGAAGCCCCGT | 59.665 | 55.0 | 0.00 | 0.0 | 0.00 | 5.28 | R |
4009 | 11599 | 0.538057 | CCTGCACACACCACTCCAAT | 60.538 | 55.0 | 0.00 | 0.0 | 0.00 | 3.16 | R |
5002 | 15776 | 1.138047 | CGAAGCCGTACACCGTGATC | 61.138 | 60.0 | 5.28 | 0.0 | 33.66 | 2.92 | R |
5684 | 18019 | 0.525761 | AGCAAAGCACACACAACGTT | 59.474 | 45.0 | 0.00 | 0.0 | 0.00 | 3.99 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
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Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
36 | 37 | 2.582436 | GCTAGGGCTACCGTTGCA | 59.418 | 61.111 | 7.27 | 0.00 | 43.47 | 4.08 |
44 | 45 | 1.666553 | CTACCGTTGCAGCAACCGA | 60.667 | 57.895 | 28.73 | 15.06 | 40.82 | 4.69 |
51 | 52 | 1.851021 | TTGCAGCAACCGATCCAACG | 61.851 | 55.000 | 2.83 | 0.00 | 0.00 | 4.10 |
58 | 59 | 1.922135 | AACCGATCCAACGCATGCAC | 61.922 | 55.000 | 19.57 | 0.00 | 0.00 | 4.57 |
59 | 60 | 2.397754 | CCGATCCAACGCATGCACA | 61.398 | 57.895 | 19.57 | 0.00 | 0.00 | 4.57 |
60 | 61 | 1.717791 | CCGATCCAACGCATGCACAT | 61.718 | 55.000 | 19.57 | 0.00 | 0.00 | 3.21 |
85 | 86 | 1.442769 | CAATCTTGGGTGTCTCCACG | 58.557 | 55.000 | 0.00 | 0.00 | 42.80 | 4.94 |
106 | 107 | 1.010574 | CGACGTCATCCGCTCTCTC | 60.011 | 63.158 | 17.16 | 0.00 | 41.42 | 3.20 |
111 | 112 | 1.077716 | TCATCCGCTCTCTCCGACA | 60.078 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
128 | 129 | 2.064762 | GACAGGCTCATCATATGTCGC | 58.935 | 52.381 | 1.90 | 1.70 | 31.87 | 5.19 |
140 | 141 | 1.617322 | TATGTCGCCTTCGCCTCTAT | 58.383 | 50.000 | 0.00 | 0.00 | 35.26 | 1.98 |
142 | 143 | 1.370657 | GTCGCCTTCGCCTCTATCG | 60.371 | 63.158 | 0.00 | 0.00 | 35.26 | 2.92 |
162 | 163 | 6.771188 | ATCGATCCGTTGAGAATAATCAAC | 57.229 | 37.500 | 9.07 | 9.07 | 34.02 | 3.18 |
164 | 165 | 4.085055 | CGATCCGTTGAGAATAATCAACCG | 60.085 | 45.833 | 12.55 | 7.55 | 34.02 | 4.44 |
165 | 166 | 3.527533 | TCCGTTGAGAATAATCAACCGG | 58.472 | 45.455 | 12.55 | 15.09 | 34.02 | 5.28 |
181 | 182 | 1.010125 | CGGACAAACACAAGCACGG | 60.010 | 57.895 | 0.00 | 0.00 | 0.00 | 4.94 |
200 | 201 | 3.502211 | ACGGCACCAAGATTTGTTAAGAG | 59.498 | 43.478 | 0.00 | 0.00 | 0.00 | 2.85 |
214 | 215 | 7.815840 | TTTGTTAAGAGGTTCATCAACATGA | 57.184 | 32.000 | 0.00 | 0.00 | 37.24 | 3.07 |
217 | 218 | 7.676004 | TGTTAAGAGGTTCATCAACATGACTA | 58.324 | 34.615 | 0.00 | 0.00 | 38.86 | 2.59 |
222 | 223 | 6.155910 | AGAGGTTCATCAACATGACTACATCT | 59.844 | 38.462 | 0.00 | 0.00 | 38.86 | 2.90 |
232 | 233 | 9.312904 | TCAACATGACTACATCTATATCCATGA | 57.687 | 33.333 | 0.00 | 0.00 | 35.47 | 3.07 |
247 | 248 | 9.546428 | CTATATCCATGAACATGTCTACAAACA | 57.454 | 33.333 | 12.74 | 0.00 | 37.11 | 2.83 |
248 | 249 | 5.940192 | TCCATGAACATGTCTACAAACAC | 57.060 | 39.130 | 12.74 | 0.00 | 37.11 | 3.32 |
251 | 252 | 5.702670 | CCATGAACATGTCTACAAACACTCT | 59.297 | 40.000 | 12.74 | 0.00 | 37.11 | 3.24 |
259 | 264 | 4.202223 | TGTCTACAAACACTCTTCCTCACC | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
299 | 304 | 1.002134 | CCTTCAATGGGTCCGCAGT | 60.002 | 57.895 | 0.00 | 0.00 | 0.00 | 4.40 |
315 | 320 | 3.357079 | GTGGCCTTCACACAGCGG | 61.357 | 66.667 | 3.32 | 0.00 | 45.39 | 5.52 |
316 | 321 | 4.641645 | TGGCCTTCACACAGCGGG | 62.642 | 66.667 | 3.32 | 0.00 | 0.00 | 6.13 |
318 | 323 | 3.050275 | GCCTTCACACAGCGGGTC | 61.050 | 66.667 | 0.00 | 0.00 | 0.00 | 4.46 |
344 | 377 | 2.514592 | CGCGGCATCTGGACCATT | 60.515 | 61.111 | 0.00 | 0.00 | 0.00 | 3.16 |
348 | 381 | 1.019673 | CGGCATCTGGACCATTTCTG | 58.980 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
375 | 408 | 7.343574 | TCGTGATCTCTATCTAGCCTACTATCT | 59.656 | 40.741 | 0.00 | 0.00 | 32.93 | 1.98 |
376 | 409 | 7.652105 | CGTGATCTCTATCTAGCCTACTATCTC | 59.348 | 44.444 | 0.00 | 0.00 | 32.93 | 2.75 |
377 | 410 | 8.482943 | GTGATCTCTATCTAGCCTACTATCTCA | 58.517 | 40.741 | 0.00 | 0.00 | 32.93 | 3.27 |
378 | 411 | 9.224486 | TGATCTCTATCTAGCCTACTATCTCAT | 57.776 | 37.037 | 0.00 | 0.00 | 32.93 | 2.90 |
393 | 426 | 9.906660 | CTACTATCTCATTCTCATGTTTAGTCC | 57.093 | 37.037 | 0.00 | 0.00 | 30.32 | 3.85 |
400 | 433 | 6.947733 | TCATTCTCATGTTTAGTCCATTTGGT | 59.052 | 34.615 | 0.00 | 0.00 | 36.34 | 3.67 |
409 | 442 | 1.304052 | TCCATTTGGTTGCCCCTCG | 60.304 | 57.895 | 0.00 | 0.00 | 36.34 | 4.63 |
410 | 443 | 2.350458 | CCATTTGGTTGCCCCTCGG | 61.350 | 63.158 | 0.00 | 0.00 | 0.00 | 4.63 |
411 | 444 | 1.606313 | CATTTGGTTGCCCCTCGGT | 60.606 | 57.895 | 0.00 | 0.00 | 0.00 | 4.69 |
417 | 450 | 4.344865 | TTGCCCCTCGGTGCCTTC | 62.345 | 66.667 | 0.00 | 0.00 | 0.00 | 3.46 |
427 | 463 | 3.574396 | CCTCGGTGCCTTCAGATAATAGA | 59.426 | 47.826 | 0.00 | 0.00 | 0.00 | 1.98 |
432 | 468 | 2.632996 | TGCCTTCAGATAATAGACCCGG | 59.367 | 50.000 | 0.00 | 0.00 | 0.00 | 5.73 |
478 | 621 | 1.661341 | GCCTCATGTGTCCTGTCATC | 58.339 | 55.000 | 0.00 | 0.00 | 0.00 | 2.92 |
484 | 627 | 1.153549 | GTGTCCTGTCATCGCCTCC | 60.154 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
488 | 631 | 1.480954 | GTCCTGTCATCGCCTCCTTTA | 59.519 | 52.381 | 0.00 | 0.00 | 0.00 | 1.85 |
516 | 659 | 0.248866 | AACAAACGAAGCCCGCAAAG | 60.249 | 50.000 | 0.00 | 0.00 | 43.32 | 2.77 |
517 | 660 | 1.358759 | CAAACGAAGCCCGCAAAGT | 59.641 | 52.632 | 0.00 | 0.00 | 43.32 | 2.66 |
578 | 721 | 8.843262 | TGATCTTCATCATGCTTATAAAGTTGG | 58.157 | 33.333 | 0.00 | 0.00 | 33.80 | 3.77 |
579 | 722 | 8.757982 | ATCTTCATCATGCTTATAAAGTTGGT | 57.242 | 30.769 | 0.00 | 0.00 | 0.00 | 3.67 |
580 | 723 | 8.213518 | TCTTCATCATGCTTATAAAGTTGGTC | 57.786 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
581 | 724 | 7.828717 | TCTTCATCATGCTTATAAAGTTGGTCA | 59.171 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
582 | 725 | 7.936496 | TCATCATGCTTATAAAGTTGGTCAA | 57.064 | 32.000 | 0.00 | 0.00 | 0.00 | 3.18 |
601 | 744 | 8.514330 | TGGTCAAACTTTACAATACTTGACTT | 57.486 | 30.769 | 11.30 | 0.00 | 41.40 | 3.01 |
603 | 746 | 8.617809 | GGTCAAACTTTACAATACTTGACTTCA | 58.382 | 33.333 | 11.30 | 0.00 | 41.40 | 3.02 |
604 | 747 | 9.651718 | GTCAAACTTTACAATACTTGACTTCAG | 57.348 | 33.333 | 5.69 | 0.00 | 39.54 | 3.02 |
605 | 748 | 9.607988 | TCAAACTTTACAATACTTGACTTCAGA | 57.392 | 29.630 | 0.00 | 0.00 | 0.00 | 3.27 |
606 | 749 | 9.651718 | CAAACTTTACAATACTTGACTTCAGAC | 57.348 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
607 | 750 | 8.958119 | AACTTTACAATACTTGACTTCAGACA | 57.042 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
608 | 751 | 8.958119 | ACTTTACAATACTTGACTTCAGACAA | 57.042 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
612 | 755 | 9.778741 | TTACAATACTTGACTTCAGACAAATCT | 57.221 | 29.630 | 0.00 | 0.00 | 34.57 | 2.40 |
613 | 756 | 8.682936 | ACAATACTTGACTTCAGACAAATCTT | 57.317 | 30.769 | 0.00 | 0.00 | 30.42 | 2.40 |
614 | 757 | 9.778741 | ACAATACTTGACTTCAGACAAATCTTA | 57.221 | 29.630 | 0.00 | 0.00 | 30.42 | 2.10 |
619 | 762 | 9.950496 | ACTTGACTTCAGACAAATCTTATATGT | 57.050 | 29.630 | 0.00 | 0.00 | 30.42 | 2.29 |
622 | 765 | 9.942850 | TGACTTCAGACAAATCTTATATGTGAA | 57.057 | 29.630 | 0.00 | 0.00 | 30.42 | 3.18 |
624 | 767 | 9.950496 | ACTTCAGACAAATCTTATATGTGAACT | 57.050 | 29.630 | 0.00 | 0.00 | 30.42 | 3.01 |
637 | 780 | 9.104965 | CTTATATGTGAACTAAAAATGACCGGA | 57.895 | 33.333 | 9.46 | 0.00 | 0.00 | 5.14 |
664 | 1073 | 7.559170 | GGGAGTACTAATAACCAACTCAGACTA | 59.441 | 40.741 | 0.00 | 0.00 | 38.63 | 2.59 |
727 | 1136 | 3.036084 | CGGCGTGACACCTGTGAC | 61.036 | 66.667 | 3.94 | 0.00 | 0.00 | 3.67 |
752 | 1161 | 8.695456 | ACATTTCCCATTTGTCTATGTAAATCC | 58.305 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
774 | 1183 | 2.107750 | CGCGGCACATGATCCTCT | 59.892 | 61.111 | 0.00 | 0.00 | 0.00 | 3.69 |
862 | 1283 | 7.668052 | TCCCTTCTTCTATAAGCATCTACTCTC | 59.332 | 40.741 | 0.00 | 0.00 | 32.36 | 3.20 |
933 | 1373 | 1.140804 | GCTCCCGCACTTCTCTCTC | 59.859 | 63.158 | 0.00 | 0.00 | 35.78 | 3.20 |
1158 | 1613 | 1.695893 | GGATGTGCATCGACCACACG | 61.696 | 60.000 | 19.35 | 0.00 | 45.00 | 4.49 |
1654 | 4616 | 3.430862 | GCATGGTCGGCTTCGCAA | 61.431 | 61.111 | 0.00 | 0.00 | 0.00 | 4.85 |
1725 | 4687 | 1.758514 | GATCAGGGACCAGCTCCGA | 60.759 | 63.158 | 0.00 | 0.00 | 40.56 | 4.55 |
1872 | 4834 | 2.548875 | CTCGCGGTGAGTACTACTACT | 58.451 | 52.381 | 6.13 | 0.00 | 40.03 | 2.57 |
1873 | 4835 | 3.711086 | CTCGCGGTGAGTACTACTACTA | 58.289 | 50.000 | 6.13 | 0.00 | 40.03 | 1.82 |
1874 | 4836 | 3.448686 | TCGCGGTGAGTACTACTACTAC | 58.551 | 50.000 | 6.13 | 0.00 | 32.96 | 2.73 |
1904 | 4867 | 8.864087 | AGTATATTGCATTGTAGACAGAGATCA | 58.136 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
1912 | 4882 | 8.547069 | GCATTGTAGACAGAGATCAAGTATTTC | 58.453 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
1930 | 4900 | 8.594881 | AGTATTTCTAACGATCCATGATGAAC | 57.405 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
1935 | 4905 | 6.639563 | TCTAACGATCCATGATGAACTTTCA | 58.360 | 36.000 | 0.00 | 0.00 | 42.14 | 2.69 |
1949 | 4919 | 5.120399 | TGAACTTTCACCACGTAATTCTGT | 58.880 | 37.500 | 0.00 | 0.00 | 31.01 | 3.41 |
1962 | 4932 | 8.592998 | CCACGTAATTCTGTAATTTCAGTAGAC | 58.407 | 37.037 | 11.33 | 4.80 | 36.67 | 2.59 |
1982 | 4955 | 4.932200 | AGACAAATTTCCATCGAGTCAGAC | 59.068 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2011 | 4995 | 4.978083 | AAAATGTCTCCAGCTAAGCATG | 57.022 | 40.909 | 0.00 | 0.00 | 0.00 | 4.06 |
2012 | 4996 | 2.634815 | ATGTCTCCAGCTAAGCATGG | 57.365 | 50.000 | 0.00 | 0.00 | 37.97 | 3.66 |
2013 | 4997 | 0.543277 | TGTCTCCAGCTAAGCATGGG | 59.457 | 55.000 | 0.00 | 0.00 | 37.19 | 4.00 |
2014 | 4998 | 0.543749 | GTCTCCAGCTAAGCATGGGT | 59.456 | 55.000 | 0.00 | 0.00 | 37.19 | 4.51 |
2015 | 4999 | 0.543277 | TCTCCAGCTAAGCATGGGTG | 59.457 | 55.000 | 0.00 | 0.00 | 37.19 | 4.61 |
2016 | 5000 | 0.254178 | CTCCAGCTAAGCATGGGTGT | 59.746 | 55.000 | 3.84 | 0.00 | 37.19 | 4.16 |
2017 | 5001 | 1.486310 | CTCCAGCTAAGCATGGGTGTA | 59.514 | 52.381 | 3.84 | 0.00 | 37.19 | 2.90 |
2018 | 5002 | 1.486310 | TCCAGCTAAGCATGGGTGTAG | 59.514 | 52.381 | 3.84 | 0.00 | 37.19 | 2.74 |
2019 | 5003 | 1.303309 | CAGCTAAGCATGGGTGTAGC | 58.697 | 55.000 | 0.00 | 0.00 | 31.61 | 3.58 |
2020 | 5004 | 0.911769 | AGCTAAGCATGGGTGTAGCA | 59.088 | 50.000 | 0.00 | 0.00 | 33.40 | 3.49 |
2021 | 5005 | 1.281867 | AGCTAAGCATGGGTGTAGCAA | 59.718 | 47.619 | 0.00 | 0.00 | 33.40 | 3.91 |
2080 | 5070 | 4.175787 | AGAAACTCGTGGTTGTAGCTAG | 57.824 | 45.455 | 0.00 | 0.00 | 38.29 | 3.42 |
2082 | 5072 | 1.254026 | ACTCGTGGTTGTAGCTAGCA | 58.746 | 50.000 | 18.83 | 0.00 | 0.00 | 3.49 |
2099 | 5089 | 6.473758 | AGCTAGCATATCATGTTCATGTCAT | 58.526 | 36.000 | 18.83 | 0.00 | 0.00 | 3.06 |
2203 | 6865 | 9.118367 | TGGATAGGATATACTCACTCTAGTCTT | 57.882 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
2204 | 6866 | 9.969001 | GGATAGGATATACTCACTCTAGTCTTT | 57.031 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
2233 | 6895 | 8.668510 | AGTGTGCATATAAGTTTTATCCAGAG | 57.331 | 34.615 | 0.00 | 0.00 | 0.00 | 3.35 |
2234 | 6896 | 8.267894 | AGTGTGCATATAAGTTTTATCCAGAGT | 58.732 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
2235 | 6897 | 8.552034 | GTGTGCATATAAGTTTTATCCAGAGTC | 58.448 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
2254 | 6916 | 9.104965 | CCAGAGTCAAAATATTATTACGTCCAA | 57.895 | 33.333 | 0.00 | 0.00 | 0.00 | 3.53 |
2276 | 6938 | 7.585286 | CAAATTAGTTGGACATGTTCATTGG | 57.415 | 36.000 | 7.89 | 0.00 | 33.18 | 3.16 |
2277 | 6939 | 7.377398 | CAAATTAGTTGGACATGTTCATTGGA | 58.623 | 34.615 | 7.89 | 0.00 | 33.18 | 3.53 |
2278 | 6940 | 7.537596 | AATTAGTTGGACATGTTCATTGGAA | 57.462 | 32.000 | 7.89 | 0.90 | 0.00 | 3.53 |
2279 | 6941 | 6.968263 | TTAGTTGGACATGTTCATTGGAAA | 57.032 | 33.333 | 7.89 | 0.00 | 34.13 | 3.13 |
2280 | 6942 | 5.867903 | AGTTGGACATGTTCATTGGAAAA | 57.132 | 34.783 | 7.89 | 0.00 | 34.13 | 2.29 |
2345 | 7705 | 2.358737 | CAAGCCTCCGCCGAAAGT | 60.359 | 61.111 | 0.00 | 0.00 | 34.57 | 2.66 |
2435 | 7971 | 3.007973 | GCGACGGGGCTTCTTCTCT | 62.008 | 63.158 | 0.00 | 0.00 | 0.00 | 3.10 |
2621 | 8202 | 0.382158 | CTCGTGCTTCAGCCGATCTA | 59.618 | 55.000 | 11.25 | 0.00 | 40.75 | 1.98 |
2632 | 8213 | 1.725557 | GCCGATCTAGTCTGGCACGA | 61.726 | 60.000 | 14.24 | 0.00 | 42.37 | 4.35 |
2635 | 8216 | 1.335182 | CGATCTAGTCTGGCACGACAT | 59.665 | 52.381 | 15.95 | 4.72 | 35.13 | 3.06 |
2649 | 8230 | 1.227102 | GACATGGGCATGGCAGGTA | 59.773 | 57.895 | 22.06 | 4.43 | 46.06 | 3.08 |
2651 | 8232 | 0.468585 | ACATGGGCATGGCAGGTATG | 60.469 | 55.000 | 22.06 | 19.16 | 42.91 | 2.39 |
2658 | 8239 | 3.752622 | TGGCAGGTATGGGCATGA | 58.247 | 55.556 | 0.00 | 0.00 | 35.74 | 3.07 |
2677 | 8258 | 4.007644 | CTGGTGGTGCTCTGGCGA | 62.008 | 66.667 | 0.00 | 0.00 | 42.25 | 5.54 |
2681 | 8262 | 2.685017 | TGGTGCTCTGGCGAGGAT | 60.685 | 61.111 | 0.00 | 0.00 | 39.90 | 3.24 |
2682 | 8263 | 1.381191 | TGGTGCTCTGGCGAGGATA | 60.381 | 57.895 | 0.00 | 0.00 | 39.90 | 2.59 |
2696 | 8277 | 2.348998 | GATATGCGGCCAGAGGGG | 59.651 | 66.667 | 2.24 | 0.00 | 40.85 | 4.79 |
2736 | 8329 | 2.666190 | CAGTGCGTCTGTGTGGGG | 60.666 | 66.667 | 1.27 | 0.00 | 39.17 | 4.96 |
2740 | 8333 | 4.394712 | GCGTCTGTGTGGGGAGGG | 62.395 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
2741 | 8334 | 4.394712 | CGTCTGTGTGGGGAGGGC | 62.395 | 72.222 | 0.00 | 0.00 | 0.00 | 5.19 |
2748 | 8341 | 2.766651 | GTGGGGAGGGCCGACATA | 60.767 | 66.667 | 0.00 | 0.00 | 33.83 | 2.29 |
2783 | 8376 | 2.338984 | GTTCTGCCGTCGTGAGGT | 59.661 | 61.111 | 0.00 | 0.00 | 0.00 | 3.85 |
2790 | 8383 | 3.112075 | CGTCGTGAGGTTGCGCAT | 61.112 | 61.111 | 12.75 | 0.00 | 0.00 | 4.73 |
2886 | 8480 | 3.060615 | CTGCTGCACAAGGGGCTC | 61.061 | 66.667 | 0.00 | 0.00 | 0.00 | 4.70 |
2888 | 8482 | 4.704833 | GCTGCACAAGGGGCTCGA | 62.705 | 66.667 | 0.00 | 0.00 | 0.00 | 4.04 |
2960 | 8554 | 3.349006 | CGGCTATGGATGCGGCAC | 61.349 | 66.667 | 4.03 | 0.00 | 0.00 | 5.01 |
2972 | 8566 | 2.981302 | CGGCACATCTGGTCTCCA | 59.019 | 61.111 | 0.00 | 0.00 | 0.00 | 3.86 |
3053 | 8647 | 1.252904 | CCATGGTGGTTCTTGGCCTG | 61.253 | 60.000 | 3.32 | 0.00 | 31.35 | 4.85 |
3111 | 9919 | 3.233980 | AGGGCACAGTGACTCGCA | 61.234 | 61.111 | 6.30 | 0.00 | 0.00 | 5.10 |
3135 | 9943 | 1.459348 | TCCAGTGGCTCTGTGTCCA | 60.459 | 57.895 | 14.80 | 0.00 | 42.19 | 4.02 |
3158 | 9966 | 0.179034 | GACTGTGGATGGATCTGGCC | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
3172 | 9981 | 1.856873 | TGGCCCCTTTGATGGAGGT | 60.857 | 57.895 | 0.00 | 0.00 | 32.15 | 3.85 |
3231 | 10040 | 1.576356 | GCGGATCTCGATGCTTCTTT | 58.424 | 50.000 | 7.64 | 0.00 | 42.43 | 2.52 |
3540 | 10917 | 1.594310 | GGGCTTCGTCTCAGAGCTT | 59.406 | 57.895 | 0.00 | 0.00 | 0.00 | 3.74 |
3552 | 10929 | 2.819595 | GAGCTTGGCATCGGCGAA | 60.820 | 61.111 | 15.93 | 0.00 | 42.47 | 4.70 |
3553 | 10930 | 2.124570 | AGCTTGGCATCGGCGAAT | 60.125 | 55.556 | 15.93 | 0.00 | 42.47 | 3.34 |
3601 | 10978 | 1.810031 | CGTCCAGACTTCTGTGGCAAA | 60.810 | 52.381 | 5.53 | 0.00 | 42.27 | 3.68 |
3645 | 11026 | 1.172180 | ACACGGCAATGGTTGAGGTG | 61.172 | 55.000 | 10.14 | 10.14 | 39.62 | 4.00 |
3660 | 11204 | 2.283529 | GGTGGTCGGCTCTTCTCCA | 61.284 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
3711 | 11255 | 2.607635 | TGTTGTTGTGAAGTCGAAGCTC | 59.392 | 45.455 | 0.00 | 0.00 | 0.00 | 4.09 |
3842 | 11418 | 1.227823 | CTGGTCGCAGGTGGTTGAA | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 2.69 |
3951 | 11535 | 0.539986 | TCAGGGTTTAGGGATGACGC | 59.460 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
3953 | 11537 | 0.831307 | AGGGTTTAGGGATGACGCTC | 59.169 | 55.000 | 0.00 | 0.00 | 39.88 | 5.03 |
3955 | 11539 | 1.065709 | GGGTTTAGGGATGACGCTCAA | 60.066 | 52.381 | 0.00 | 0.00 | 39.88 | 3.02 |
3957 | 11541 | 2.093658 | GGTTTAGGGATGACGCTCAAGA | 60.094 | 50.000 | 0.00 | 0.00 | 39.88 | 3.02 |
3958 | 11542 | 3.190874 | GTTTAGGGATGACGCTCAAGAG | 58.809 | 50.000 | 0.00 | 0.00 | 39.88 | 2.85 |
3986 | 11576 | 0.249447 | GTGATGACGATGATGCCCGA | 60.249 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
3996 | 11586 | 0.320683 | TGATGCCCGAGTGTTGTCTG | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4025 | 11615 | 0.877071 | CTCATTGGAGTGGTGTGTGC | 59.123 | 55.000 | 0.00 | 0.00 | 36.36 | 4.57 |
4026 | 11616 | 0.182299 | TCATTGGAGTGGTGTGTGCA | 59.818 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
4083 | 11677 | 7.394923 | TGATAGTTTTCACCCGGTTTTTCATAT | 59.605 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
4089 | 11683 | 6.896021 | TCACCCGGTTTTTCATATTTAACA | 57.104 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
4090 | 11684 | 7.469537 | TCACCCGGTTTTTCATATTTAACAT | 57.530 | 32.000 | 0.00 | 0.00 | 0.00 | 2.71 |
4126 | 11720 | 6.557291 | TTCGCTCGGTTTTTCCTAATTAAA | 57.443 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
4208 | 11802 | 9.567776 | TCAAAGTATCTCTATTTTGACCAAACA | 57.432 | 29.630 | 0.00 | 0.00 | 38.14 | 2.83 |
4237 | 11831 | 6.592798 | AAAACAGTTTCAGCATTCACAATG | 57.407 | 33.333 | 0.00 | 0.00 | 41.85 | 2.82 |
4315 | 11909 | 9.429359 | ACTTTGTAATGTTTGAATTGACACAAA | 57.571 | 25.926 | 0.00 | 0.00 | 34.33 | 2.83 |
4324 | 11918 | 9.906660 | TGTTTGAATTGACACAAATCTAATACC | 57.093 | 29.630 | 0.00 | 0.00 | 38.09 | 2.73 |
4326 | 11920 | 7.315247 | TGAATTGACACAAATCTAATACCCG | 57.685 | 36.000 | 0.00 | 0.00 | 0.00 | 5.28 |
4327 | 11921 | 7.106890 | TGAATTGACACAAATCTAATACCCGA | 58.893 | 34.615 | 0.00 | 0.00 | 0.00 | 5.14 |
4328 | 11922 | 7.608376 | TGAATTGACACAAATCTAATACCCGAA | 59.392 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
4329 | 11923 | 6.978343 | TTGACACAAATCTAATACCCGAAG | 57.022 | 37.500 | 0.00 | 0.00 | 0.00 | 3.79 |
4330 | 11924 | 6.045072 | TGACACAAATCTAATACCCGAAGT | 57.955 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
4331 | 11925 | 7.172868 | TGACACAAATCTAATACCCGAAGTA | 57.827 | 36.000 | 0.00 | 0.00 | 34.76 | 2.24 |
4332 | 11926 | 7.613585 | TGACACAAATCTAATACCCGAAGTAA | 58.386 | 34.615 | 0.00 | 0.00 | 33.70 | 2.24 |
4333 | 11927 | 8.095792 | TGACACAAATCTAATACCCGAAGTAAA | 58.904 | 33.333 | 0.00 | 0.00 | 33.70 | 2.01 |
4334 | 11928 | 8.851541 | ACACAAATCTAATACCCGAAGTAAAA | 57.148 | 30.769 | 0.00 | 0.00 | 33.70 | 1.52 |
4335 | 11929 | 9.287373 | ACACAAATCTAATACCCGAAGTAAAAA | 57.713 | 29.630 | 0.00 | 0.00 | 33.70 | 1.94 |
4361 | 11955 | 9.796180 | AAGACCGGATGGAGTATATATATAGAC | 57.204 | 37.037 | 9.46 | 9.11 | 39.21 | 2.59 |
4362 | 11956 | 8.946248 | AGACCGGATGGAGTATATATATAGACA | 58.054 | 37.037 | 17.49 | 3.65 | 39.21 | 3.41 |
4363 | 11957 | 9.742144 | GACCGGATGGAGTATATATATAGACAT | 57.258 | 37.037 | 17.49 | 7.77 | 39.21 | 3.06 |
4364 | 11958 | 9.521841 | ACCGGATGGAGTATATATATAGACATG | 57.478 | 37.037 | 17.49 | 0.00 | 39.21 | 3.21 |
4365 | 11959 | 9.740710 | CCGGATGGAGTATATATATAGACATGA | 57.259 | 37.037 | 17.49 | 3.41 | 37.49 | 3.07 |
4391 | 12406 | 4.989279 | AAAGACATGATCGAAAATGGGG | 57.011 | 40.909 | 13.43 | 0.00 | 0.00 | 4.96 |
4467 | 15205 | 9.835389 | ATTTCATTTGTTGGATATATTTGTGGG | 57.165 | 29.630 | 0.00 | 0.00 | 0.00 | 4.61 |
4479 | 15217 | 0.536233 | TTTGTGGGGTGTCATCCGTG | 60.536 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
4494 | 15232 | 2.920524 | TCCGTGAACCTAACAGCAAAA | 58.079 | 42.857 | 0.00 | 0.00 | 0.00 | 2.44 |
4509 | 15247 | 0.614294 | CAAAATCCCTGCATTGGCCA | 59.386 | 50.000 | 0.00 | 0.00 | 40.13 | 5.36 |
4510 | 15248 | 0.614812 | AAAATCCCTGCATTGGCCAC | 59.385 | 50.000 | 3.88 | 0.00 | 40.13 | 5.01 |
4511 | 15249 | 1.266867 | AAATCCCTGCATTGGCCACC | 61.267 | 55.000 | 3.88 | 0.00 | 40.13 | 4.61 |
4921 | 15695 | 1.295357 | TGGGTAAGCGCACATCAACG | 61.295 | 55.000 | 11.47 | 0.00 | 32.36 | 4.10 |
4964 | 15738 | 0.745128 | CTAATGGCGGCCGGTGTTTA | 60.745 | 55.000 | 29.38 | 6.32 | 0.00 | 2.01 |
4970 | 15744 | 0.662077 | GCGGCCGGTGTTTACTTTTG | 60.662 | 55.000 | 29.38 | 0.00 | 0.00 | 2.44 |
5127 | 15911 | 1.252904 | TGAAGGCCCTTTGATGCTGC | 61.253 | 55.000 | 0.00 | 0.00 | 0.00 | 5.25 |
5178 | 15962 | 2.866762 | GCTCACCTCGGATGTACAAATC | 59.133 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
5211 | 15995 | 8.521176 | ACATAGTTCACTACTTCAGTATTTCGT | 58.479 | 33.333 | 0.00 | 0.00 | 38.33 | 3.85 |
5305 | 16089 | 5.633996 | TTTTGCGAAAATTAGTTGTGCAG | 57.366 | 34.783 | 0.00 | 0.00 | 33.27 | 4.41 |
5306 | 16090 | 3.980646 | TGCGAAAATTAGTTGTGCAGT | 57.019 | 38.095 | 0.00 | 0.00 | 0.00 | 4.40 |
5307 | 16091 | 3.626977 | TGCGAAAATTAGTTGTGCAGTG | 58.373 | 40.909 | 0.00 | 0.00 | 0.00 | 3.66 |
5308 | 16092 | 3.066064 | TGCGAAAATTAGTTGTGCAGTGT | 59.934 | 39.130 | 0.00 | 0.00 | 0.00 | 3.55 |
5309 | 16093 | 4.041723 | GCGAAAATTAGTTGTGCAGTGTT | 58.958 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
5310 | 16094 | 4.502645 | GCGAAAATTAGTTGTGCAGTGTTT | 59.497 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
5311 | 16095 | 5.005299 | GCGAAAATTAGTTGTGCAGTGTTTT | 59.995 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
5312 | 16096 | 6.454981 | GCGAAAATTAGTTGTGCAGTGTTTTT | 60.455 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
5350 | 16134 | 6.129457 | GCGAAAATTAGTTGTGCAGTGTTAAG | 60.129 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
5392 | 16176 | 8.028354 | TGCACGTTGATTTGATGAAAAGAATAT | 58.972 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
5427 | 16211 | 9.603921 | CAATATTAGATGCAAAGGGTTTGATTT | 57.396 | 29.630 | 3.56 | 0.00 | 43.26 | 2.17 |
5441 | 16225 | 7.682628 | AGGGTTTGATTTGATGAAATGATGTT | 58.317 | 30.769 | 0.00 | 0.00 | 31.58 | 2.71 |
5448 | 16232 | 9.844790 | TGATTTGATGAAATGATGTTGAGTAAC | 57.155 | 29.630 | 0.00 | 0.00 | 33.24 | 2.50 |
5518 | 17851 | 4.122337 | ACCATATCAGGGTACACGGATA | 57.878 | 45.455 | 18.47 | 18.47 | 36.72 | 2.59 |
5519 | 17852 | 4.684724 | ACCATATCAGGGTACACGGATAT | 58.315 | 43.478 | 20.94 | 20.94 | 36.72 | 1.63 |
5520 | 17853 | 4.466370 | ACCATATCAGGGTACACGGATATG | 59.534 | 45.833 | 33.81 | 33.81 | 44.52 | 1.78 |
5521 | 17854 | 4.466370 | CCATATCAGGGTACACGGATATGT | 59.534 | 45.833 | 35.64 | 17.19 | 43.91 | 2.29 |
5522 | 17855 | 5.394224 | CCATATCAGGGTACACGGATATGTC | 60.394 | 48.000 | 35.64 | 4.22 | 43.91 | 3.06 |
5523 | 17856 | 3.308035 | TCAGGGTACACGGATATGTCT | 57.692 | 47.619 | 0.00 | 0.00 | 33.85 | 3.41 |
5545 | 17880 | 7.041030 | TGTCTTTGGCGTAATTTCTTTACATGA | 60.041 | 33.333 | 0.00 | 0.00 | 40.25 | 3.07 |
5546 | 17881 | 7.806014 | GTCTTTGGCGTAATTTCTTTACATGAA | 59.194 | 33.333 | 0.00 | 0.00 | 40.25 | 2.57 |
5583 | 17918 | 9.284968 | CCTTTATTACTTCCGATTCACCATTAT | 57.715 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
5593 | 17928 | 6.213397 | TCCGATTCACCATTATATCATCCACT | 59.787 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
5608 | 17943 | 7.914427 | ATCATCCACTGGATTTACTACAGTA | 57.086 | 36.000 | 7.95 | 0.00 | 39.79 | 2.74 |
5609 | 17944 | 7.108841 | TCATCCACTGGATTTACTACAGTAC | 57.891 | 40.000 | 7.95 | 0.00 | 39.79 | 2.73 |
5610 | 17945 | 6.895756 | TCATCCACTGGATTTACTACAGTACT | 59.104 | 38.462 | 7.95 | 0.00 | 39.79 | 2.73 |
5611 | 17946 | 8.057011 | TCATCCACTGGATTTACTACAGTACTA | 58.943 | 37.037 | 7.95 | 0.00 | 39.79 | 1.82 |
5612 | 17947 | 7.636150 | TCCACTGGATTTACTACAGTACTAC | 57.364 | 40.000 | 0.00 | 0.00 | 43.09 | 2.73 |
5613 | 17948 | 7.408543 | TCCACTGGATTTACTACAGTACTACT | 58.591 | 38.462 | 0.00 | 0.00 | 43.09 | 2.57 |
5614 | 17949 | 7.555554 | TCCACTGGATTTACTACAGTACTACTC | 59.444 | 40.741 | 0.00 | 0.00 | 43.09 | 2.59 |
5615 | 17950 | 7.201803 | CCACTGGATTTACTACAGTACTACTCC | 60.202 | 44.444 | 0.00 | 0.00 | 43.09 | 3.85 |
5616 | 17951 | 6.832900 | ACTGGATTTACTACAGTACTACTCCC | 59.167 | 42.308 | 0.00 | 0.00 | 43.13 | 4.30 |
5617 | 17952 | 6.978261 | TGGATTTACTACAGTACTACTCCCT | 58.022 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
5618 | 17953 | 7.059156 | TGGATTTACTACAGTACTACTCCCTC | 58.941 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
5619 | 17954 | 6.489700 | GGATTTACTACAGTACTACTCCCTCC | 59.510 | 46.154 | 0.00 | 0.00 | 0.00 | 4.30 |
5620 | 17955 | 6.392911 | TTTACTACAGTACTACTCCCTCCA | 57.607 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
5621 | 17956 | 6.587560 | TTACTACAGTACTACTCCCTCCAT | 57.412 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
5622 | 17957 | 5.469210 | ACTACAGTACTACTCCCTCCATT | 57.531 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
5623 | 17958 | 5.447757 | ACTACAGTACTACTCCCTCCATTC | 58.552 | 45.833 | 0.00 | 0.00 | 0.00 | 2.67 |
5624 | 17959 | 3.644335 | ACAGTACTACTCCCTCCATTCC | 58.356 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
5625 | 17960 | 3.012502 | ACAGTACTACTCCCTCCATTCCA | 59.987 | 47.826 | 0.00 | 0.00 | 0.00 | 3.53 |
5626 | 17961 | 4.030913 | CAGTACTACTCCCTCCATTCCAA | 58.969 | 47.826 | 0.00 | 0.00 | 0.00 | 3.53 |
5627 | 17962 | 4.469945 | CAGTACTACTCCCTCCATTCCAAA | 59.530 | 45.833 | 0.00 | 0.00 | 0.00 | 3.28 |
5628 | 17963 | 5.131142 | CAGTACTACTCCCTCCATTCCAAAT | 59.869 | 44.000 | 0.00 | 0.00 | 0.00 | 2.32 |
5629 | 17964 | 5.731678 | AGTACTACTCCCTCCATTCCAAATT | 59.268 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
5630 | 17965 | 6.906901 | AGTACTACTCCCTCCATTCCAAATTA | 59.093 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
5631 | 17966 | 6.002653 | ACTACTCCCTCCATTCCAAATTAC | 57.997 | 41.667 | 0.00 | 0.00 | 0.00 | 1.89 |
5632 | 17967 | 5.731678 | ACTACTCCCTCCATTCCAAATTACT | 59.268 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
5633 | 17968 | 5.117406 | ACTCCCTCCATTCCAAATTACTC | 57.883 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
5634 | 17969 | 4.130118 | CTCCCTCCATTCCAAATTACTCG | 58.870 | 47.826 | 0.00 | 0.00 | 0.00 | 4.18 |
5635 | 17970 | 3.521937 | TCCCTCCATTCCAAATTACTCGT | 59.478 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
5636 | 17971 | 3.877508 | CCCTCCATTCCAAATTACTCGTC | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.20 |
5637 | 17972 | 3.555956 | CCTCCATTCCAAATTACTCGTCG | 59.444 | 47.826 | 0.00 | 0.00 | 0.00 | 5.12 |
5638 | 17973 | 4.181578 | CTCCATTCCAAATTACTCGTCGT | 58.818 | 43.478 | 0.00 | 0.00 | 0.00 | 4.34 |
5639 | 17974 | 3.930229 | TCCATTCCAAATTACTCGTCGTG | 59.070 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
5640 | 17975 | 3.063452 | CCATTCCAAATTACTCGTCGTGG | 59.937 | 47.826 | 0.00 | 0.00 | 0.00 | 4.94 |
5641 | 17976 | 3.389925 | TTCCAAATTACTCGTCGTGGT | 57.610 | 42.857 | 0.00 | 0.00 | 0.00 | 4.16 |
5642 | 17977 | 3.389925 | TCCAAATTACTCGTCGTGGTT | 57.610 | 42.857 | 0.00 | 0.00 | 0.00 | 3.67 |
5643 | 17978 | 3.731089 | TCCAAATTACTCGTCGTGGTTT | 58.269 | 40.909 | 0.00 | 0.00 | 0.00 | 3.27 |
5644 | 17979 | 4.128643 | TCCAAATTACTCGTCGTGGTTTT | 58.871 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
5645 | 17980 | 5.295950 | TCCAAATTACTCGTCGTGGTTTTA | 58.704 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
5646 | 17981 | 5.406175 | TCCAAATTACTCGTCGTGGTTTTAG | 59.594 | 40.000 | 0.00 | 0.00 | 0.00 | 1.85 |
5647 | 17982 | 5.178067 | CCAAATTACTCGTCGTGGTTTTAGT | 59.822 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
5648 | 17983 | 6.293027 | CCAAATTACTCGTCGTGGTTTTAGTT | 60.293 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
5649 | 17984 | 6.457851 | AATTACTCGTCGTGGTTTTAGTTC | 57.542 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
5650 | 17985 | 3.441496 | ACTCGTCGTGGTTTTAGTTCA | 57.559 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
5651 | 17986 | 3.784338 | ACTCGTCGTGGTTTTAGTTCAA | 58.216 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
5652 | 17987 | 4.183101 | ACTCGTCGTGGTTTTAGTTCAAA | 58.817 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
5653 | 17988 | 4.630940 | ACTCGTCGTGGTTTTAGTTCAAAA | 59.369 | 37.500 | 0.00 | 0.00 | 33.66 | 2.44 |
5654 | 17989 | 5.295045 | ACTCGTCGTGGTTTTAGTTCAAAAT | 59.705 | 36.000 | 0.00 | 0.00 | 38.36 | 1.82 |
5655 | 17990 | 6.121613 | TCGTCGTGGTTTTAGTTCAAAATT | 57.878 | 33.333 | 0.00 | 0.00 | 38.36 | 1.82 |
5656 | 17991 | 6.553524 | TCGTCGTGGTTTTAGTTCAAAATTT | 58.446 | 32.000 | 0.00 | 0.00 | 38.36 | 1.82 |
5657 | 17992 | 6.469595 | TCGTCGTGGTTTTAGTTCAAAATTTG | 59.530 | 34.615 | 0.00 | 0.00 | 38.36 | 2.32 |
5658 | 17993 | 6.469595 | CGTCGTGGTTTTAGTTCAAAATTTGA | 59.530 | 34.615 | 4.03 | 4.03 | 38.36 | 2.69 |
5659 | 17994 | 7.008447 | CGTCGTGGTTTTAGTTCAAAATTTGAA | 59.992 | 33.333 | 16.28 | 16.28 | 46.68 | 2.69 |
5672 | 18007 | 7.743520 | TCAAAATTTGAACTAAAACCACGAC | 57.256 | 32.000 | 5.87 | 0.00 | 36.59 | 4.34 |
5673 | 18008 | 6.469595 | TCAAAATTTGAACTAAAACCACGACG | 59.530 | 34.615 | 5.87 | 0.00 | 36.59 | 5.12 |
5674 | 18009 | 5.738118 | AATTTGAACTAAAACCACGACGA | 57.262 | 34.783 | 0.00 | 0.00 | 0.00 | 4.20 |
5675 | 18010 | 4.782252 | TTTGAACTAAAACCACGACGAG | 57.218 | 40.909 | 0.00 | 0.00 | 0.00 | 4.18 |
5676 | 18011 | 3.441496 | TGAACTAAAACCACGACGAGT | 57.559 | 42.857 | 0.00 | 0.00 | 0.00 | 4.18 |
5677 | 18012 | 4.566545 | TGAACTAAAACCACGACGAGTA | 57.433 | 40.909 | 0.00 | 0.00 | 0.00 | 2.59 |
5678 | 18013 | 4.930963 | TGAACTAAAACCACGACGAGTAA | 58.069 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
5679 | 18014 | 5.531634 | TGAACTAAAACCACGACGAGTAAT | 58.468 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
5682 | 18017 | 6.219302 | ACTAAAACCACGACGAGTAATTTG | 57.781 | 37.500 | 0.00 | 2.39 | 0.00 | 2.32 |
5684 | 18019 | 3.389925 | AACCACGACGAGTAATTTGGA | 57.610 | 42.857 | 0.00 | 0.00 | 0.00 | 3.53 |
5686 | 18021 | 3.062042 | ACCACGACGAGTAATTTGGAAC | 58.938 | 45.455 | 0.00 | 0.00 | 0.00 | 3.62 |
5693 | 18028 | 3.872771 | ACGAGTAATTTGGAACGTTGTGT | 59.127 | 39.130 | 5.00 | 0.00 | 0.00 | 3.72 |
5695 | 18030 | 4.260456 | CGAGTAATTTGGAACGTTGTGTGT | 60.260 | 41.667 | 5.00 | 0.00 | 0.00 | 3.72 |
5704 | 18039 | 0.179166 | ACGTTGTGTGTGCTTTGCTG | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
5706 | 18041 | 0.458197 | GTTGTGTGTGCTTTGCTGCA | 60.458 | 50.000 | 0.00 | 0.00 | 41.05 | 4.41 |
5707 | 18042 | 0.245813 | TTGTGTGTGCTTTGCTGCAA | 59.754 | 45.000 | 11.69 | 11.69 | 45.12 | 4.08 |
5717 | 18053 | 2.799207 | GCTTTGCTGCAAGTTGCTGTTA | 60.799 | 45.455 | 28.54 | 18.55 | 45.31 | 2.41 |
5981 | 18327 | 9.930158 | ACTAATGCCCCTTATATTTTGAAACTA | 57.070 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
6005 | 18351 | 6.693315 | ATGGAATATTTAGTTTGGACGGTG | 57.307 | 37.500 | 0.00 | 0.00 | 0.00 | 4.94 |
6067 | 18413 | 3.762779 | CGTGATTTGATGGGCTTTTCTC | 58.237 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
6069 | 18415 | 3.440173 | GTGATTTGATGGGCTTTTCTCGA | 59.560 | 43.478 | 0.00 | 0.00 | 0.00 | 4.04 |
6076 | 18422 | 0.034896 | GGGCTTTTCTCGAGTGGTCA | 59.965 | 55.000 | 13.13 | 0.00 | 0.00 | 4.02 |
6083 | 18429 | 4.594123 | TTTCTCGAGTGGTCATGTGTTA | 57.406 | 40.909 | 13.13 | 0.00 | 0.00 | 2.41 |
6096 | 18442 | 5.813672 | GGTCATGTGTTATCCGCTAACTAAA | 59.186 | 40.000 | 0.00 | 0.00 | 40.40 | 1.85 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 0.176680 | CTAGGTCATGGCTGCTCGTT | 59.823 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
35 | 36 | 1.647545 | ATGCGTTGGATCGGTTGCTG | 61.648 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
36 | 37 | 1.377202 | ATGCGTTGGATCGGTTGCT | 60.377 | 52.632 | 0.00 | 0.00 | 0.00 | 3.91 |
44 | 45 | 3.243501 | GGATTAATGTGCATGCGTTGGAT | 60.244 | 43.478 | 14.09 | 2.60 | 0.00 | 3.41 |
51 | 52 | 5.900339 | CAAGATTGGATTAATGTGCATGC | 57.100 | 39.130 | 11.82 | 11.82 | 0.00 | 4.06 |
58 | 59 | 7.085023 | TGGAGACACCCAAGATTGGATTAATG | 61.085 | 42.308 | 13.27 | 5.88 | 43.51 | 1.90 |
59 | 60 | 5.044179 | TGGAGACACCCAAGATTGGATTAAT | 60.044 | 40.000 | 13.27 | 0.00 | 43.51 | 1.40 |
60 | 61 | 4.290985 | TGGAGACACCCAAGATTGGATTAA | 59.709 | 41.667 | 13.27 | 0.00 | 43.51 | 1.40 |
85 | 86 | 2.278013 | GAGCGGATGACGTCGACC | 60.278 | 66.667 | 10.58 | 14.99 | 46.52 | 4.79 |
95 | 96 | 3.834726 | CTGTCGGAGAGAGCGGAT | 58.165 | 61.111 | 0.00 | 0.00 | 42.17 | 4.18 |
106 | 107 | 2.681706 | GACATATGATGAGCCTGTCGG | 58.318 | 52.381 | 10.38 | 0.00 | 0.00 | 4.79 |
111 | 112 | 3.923354 | GGCGACATATGATGAGCCT | 57.077 | 52.632 | 10.38 | 0.00 | 46.11 | 4.58 |
162 | 163 | 1.010125 | CGTGCTTGTGTTTGTCCGG | 60.010 | 57.895 | 0.00 | 0.00 | 0.00 | 5.14 |
164 | 165 | 1.299089 | GCCGTGCTTGTGTTTGTCC | 60.299 | 57.895 | 0.00 | 0.00 | 0.00 | 4.02 |
165 | 166 | 0.865639 | GTGCCGTGCTTGTGTTTGTC | 60.866 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
181 | 182 | 5.009610 | TGAACCTCTTAACAAATCTTGGTGC | 59.990 | 40.000 | 0.00 | 0.00 | 34.12 | 5.01 |
200 | 201 | 9.935241 | ATATAGATGTAGTCATGTTGATGAACC | 57.065 | 33.333 | 0.00 | 0.00 | 40.39 | 3.62 |
214 | 215 | 9.319060 | AGACATGTTCATGGATATAGATGTAGT | 57.681 | 33.333 | 15.71 | 0.00 | 0.00 | 2.73 |
217 | 218 | 9.093458 | TGTAGACATGTTCATGGATATAGATGT | 57.907 | 33.333 | 15.71 | 0.00 | 0.00 | 3.06 |
222 | 223 | 9.325198 | GTGTTTGTAGACATGTTCATGGATATA | 57.675 | 33.333 | 15.71 | 5.26 | 0.00 | 0.86 |
227 | 228 | 5.702670 | AGAGTGTTTGTAGACATGTTCATGG | 59.297 | 40.000 | 15.71 | 0.60 | 0.00 | 3.66 |
232 | 233 | 5.930135 | AGGAAGAGTGTTTGTAGACATGTT | 58.070 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
245 | 246 | 6.017192 | TGATTTAGTAGGTGAGGAAGAGTGT | 58.983 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
247 | 248 | 6.497259 | TGTTGATTTAGTAGGTGAGGAAGAGT | 59.503 | 38.462 | 0.00 | 0.00 | 0.00 | 3.24 |
248 | 249 | 6.936279 | TGTTGATTTAGTAGGTGAGGAAGAG | 58.064 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
251 | 252 | 8.375493 | AGTATGTTGATTTAGTAGGTGAGGAA | 57.625 | 34.615 | 0.00 | 0.00 | 0.00 | 3.36 |
284 | 289 | 2.350895 | CCACTGCGGACCCATTGA | 59.649 | 61.111 | 0.00 | 0.00 | 36.56 | 2.57 |
299 | 304 | 4.641645 | CCCGCTGTGTGAAGGCCA | 62.642 | 66.667 | 5.01 | 0.00 | 0.00 | 5.36 |
304 | 309 | 4.980805 | GCCGACCCGCTGTGTGAA | 62.981 | 66.667 | 0.00 | 0.00 | 0.00 | 3.18 |
330 | 335 | 2.019984 | GACAGAAATGGTCCAGATGCC | 58.980 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
331 | 336 | 1.667724 | CGACAGAAATGGTCCAGATGC | 59.332 | 52.381 | 0.00 | 0.00 | 31.55 | 3.91 |
332 | 337 | 2.674852 | CACGACAGAAATGGTCCAGATG | 59.325 | 50.000 | 0.00 | 0.00 | 31.55 | 2.90 |
333 | 338 | 2.567169 | TCACGACAGAAATGGTCCAGAT | 59.433 | 45.455 | 0.00 | 0.00 | 31.55 | 2.90 |
334 | 339 | 1.967779 | TCACGACAGAAATGGTCCAGA | 59.032 | 47.619 | 0.00 | 0.00 | 31.55 | 3.86 |
339 | 372 | 5.596361 | AGATAGAGATCACGACAGAAATGGT | 59.404 | 40.000 | 0.00 | 0.00 | 34.17 | 3.55 |
344 | 377 | 4.757657 | GGCTAGATAGAGATCACGACAGAA | 59.242 | 45.833 | 0.00 | 0.00 | 34.17 | 3.02 |
348 | 381 | 5.484715 | AGTAGGCTAGATAGAGATCACGAC | 58.515 | 45.833 | 0.00 | 0.00 | 34.17 | 4.34 |
375 | 408 | 6.947733 | ACCAAATGGACTAAACATGAGAATGA | 59.052 | 34.615 | 6.42 | 0.00 | 38.94 | 2.57 |
376 | 409 | 7.161773 | ACCAAATGGACTAAACATGAGAATG | 57.838 | 36.000 | 6.42 | 0.00 | 38.94 | 2.67 |
377 | 410 | 7.605449 | CAACCAAATGGACTAAACATGAGAAT | 58.395 | 34.615 | 6.42 | 0.00 | 38.94 | 2.40 |
378 | 411 | 6.516527 | GCAACCAAATGGACTAAACATGAGAA | 60.517 | 38.462 | 6.42 | 0.00 | 38.94 | 2.87 |
379 | 412 | 5.048083 | GCAACCAAATGGACTAAACATGAGA | 60.048 | 40.000 | 6.42 | 0.00 | 38.94 | 3.27 |
380 | 413 | 5.163513 | GCAACCAAATGGACTAAACATGAG | 58.836 | 41.667 | 6.42 | 0.00 | 38.94 | 2.90 |
400 | 433 | 4.344865 | GAAGGCACCGAGGGGCAA | 62.345 | 66.667 | 18.98 | 0.00 | 36.48 | 4.52 |
409 | 442 | 3.555168 | CGGGTCTATTATCTGAAGGCACC | 60.555 | 52.174 | 0.00 | 0.00 | 0.00 | 5.01 |
410 | 443 | 3.555168 | CCGGGTCTATTATCTGAAGGCAC | 60.555 | 52.174 | 0.00 | 0.00 | 0.00 | 5.01 |
411 | 444 | 2.632996 | CCGGGTCTATTATCTGAAGGCA | 59.367 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
417 | 450 | 4.866508 | TGTAAGCCGGGTCTATTATCTG | 57.133 | 45.455 | 6.62 | 0.00 | 0.00 | 2.90 |
427 | 463 | 0.605319 | CACACACATGTAAGCCGGGT | 60.605 | 55.000 | 0.00 | 0.00 | 36.72 | 5.28 |
458 | 601 | 0.107993 | ATGACAGGACACATGAGGCG | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
468 | 611 | 0.250513 | AAAGGAGGCGATGACAGGAC | 59.749 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
478 | 621 | 0.605319 | TGTGGTTGCTAAAGGAGGCG | 60.605 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
484 | 627 | 4.022464 | TCGTTTGTTGTGGTTGCTAAAG | 57.978 | 40.909 | 0.00 | 0.00 | 0.00 | 1.85 |
488 | 631 | 1.469079 | GCTTCGTTTGTTGTGGTTGCT | 60.469 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
524 | 667 | 5.916883 | CAGAATGCAAGAATGACTTCGTTTT | 59.083 | 36.000 | 0.00 | 0.00 | 36.61 | 2.43 |
593 | 736 | 9.950496 | ACATATAAGATTTGTCTGAAGTCAAGT | 57.050 | 29.630 | 0.00 | 0.00 | 0.00 | 3.16 |
596 | 739 | 9.942850 | TTCACATATAAGATTTGTCTGAAGTCA | 57.057 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
598 | 741 | 9.950496 | AGTTCACATATAAGATTTGTCTGAAGT | 57.050 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
610 | 753 | 9.104965 | CCGGTCATTTTTAGTTCACATATAAGA | 57.895 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
611 | 754 | 9.104965 | TCCGGTCATTTTTAGTTCACATATAAG | 57.895 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
612 | 755 | 9.104965 | CTCCGGTCATTTTTAGTTCACATATAA | 57.895 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
613 | 756 | 7.713507 | CCTCCGGTCATTTTTAGTTCACATATA | 59.286 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
614 | 757 | 6.542370 | CCTCCGGTCATTTTTAGTTCACATAT | 59.458 | 38.462 | 0.00 | 0.00 | 0.00 | 1.78 |
615 | 758 | 5.878116 | CCTCCGGTCATTTTTAGTTCACATA | 59.122 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
616 | 759 | 4.700213 | CCTCCGGTCATTTTTAGTTCACAT | 59.300 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
617 | 760 | 4.069304 | CCTCCGGTCATTTTTAGTTCACA | 58.931 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
618 | 761 | 3.439129 | CCCTCCGGTCATTTTTAGTTCAC | 59.561 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
619 | 762 | 3.328343 | TCCCTCCGGTCATTTTTAGTTCA | 59.672 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
620 | 763 | 3.939592 | CTCCCTCCGGTCATTTTTAGTTC | 59.060 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
622 | 765 | 2.910977 | ACTCCCTCCGGTCATTTTTAGT | 59.089 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
623 | 766 | 3.629142 | ACTCCCTCCGGTCATTTTTAG | 57.371 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
624 | 767 | 4.098894 | AGTACTCCCTCCGGTCATTTTTA | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 |
625 | 768 | 2.910977 | AGTACTCCCTCCGGTCATTTTT | 59.089 | 45.455 | 0.00 | 0.00 | 0.00 | 1.94 |
626 | 769 | 2.547990 | AGTACTCCCTCCGGTCATTTT | 58.452 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
627 | 770 | 2.249309 | AGTACTCCCTCCGGTCATTT | 57.751 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
628 | 771 | 3.393426 | TTAGTACTCCCTCCGGTCATT | 57.607 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
629 | 772 | 3.614568 | ATTAGTACTCCCTCCGGTCAT | 57.385 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
630 | 773 | 4.210331 | GTTATTAGTACTCCCTCCGGTCA | 58.790 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
631 | 774 | 3.571828 | GGTTATTAGTACTCCCTCCGGTC | 59.428 | 52.174 | 0.00 | 0.00 | 0.00 | 4.79 |
632 | 775 | 3.052642 | TGGTTATTAGTACTCCCTCCGGT | 60.053 | 47.826 | 0.00 | 0.00 | 0.00 | 5.28 |
635 | 778 | 5.659971 | TGAGTTGGTTATTAGTACTCCCTCC | 59.340 | 44.000 | 0.00 | 0.00 | 35.51 | 4.30 |
637 | 780 | 6.380560 | GTCTGAGTTGGTTATTAGTACTCCCT | 59.619 | 42.308 | 0.00 | 0.00 | 35.51 | 4.20 |
640 | 783 | 8.130469 | GCTAGTCTGAGTTGGTTATTAGTACTC | 58.870 | 40.741 | 0.00 | 0.00 | 36.61 | 2.59 |
641 | 784 | 7.068470 | GGCTAGTCTGAGTTGGTTATTAGTACT | 59.932 | 40.741 | 0.00 | 0.00 | 0.00 | 2.73 |
642 | 785 | 7.147949 | TGGCTAGTCTGAGTTGGTTATTAGTAC | 60.148 | 40.741 | 0.00 | 0.00 | 0.00 | 2.73 |
643 | 786 | 6.893554 | TGGCTAGTCTGAGTTGGTTATTAGTA | 59.106 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
644 | 787 | 5.720041 | TGGCTAGTCTGAGTTGGTTATTAGT | 59.280 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
645 | 788 | 6.043411 | GTGGCTAGTCTGAGTTGGTTATTAG | 58.957 | 44.000 | 0.00 | 0.00 | 0.00 | 1.73 |
647 | 790 | 4.286032 | TGTGGCTAGTCTGAGTTGGTTATT | 59.714 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
664 | 1073 | 2.766263 | TCGATCCTATTTCTGTGTGGCT | 59.234 | 45.455 | 0.00 | 0.00 | 0.00 | 4.75 |
694 | 1103 | 1.772819 | GCCGGGATGGTGAGATGGAT | 61.773 | 60.000 | 2.18 | 0.00 | 41.21 | 3.41 |
727 | 1136 | 8.694540 | TGGATTTACATAGACAAATGGGAAATG | 58.305 | 33.333 | 0.00 | 0.00 | 31.76 | 2.32 |
752 | 1161 | 3.459378 | GATCATGTGCCGCGCCTTG | 62.459 | 63.158 | 0.00 | 0.00 | 0.00 | 3.61 |
862 | 1283 | 6.589523 | CGCTAATCTAATCTCTGGGATTTCTG | 59.410 | 42.308 | 8.27 | 0.26 | 41.42 | 3.02 |
950 | 1391 | 4.117661 | AGCGGGAAGAGTCGACGC | 62.118 | 66.667 | 11.72 | 11.72 | 45.58 | 5.19 |
1653 | 4615 | 1.375326 | GAACCTGCCGAACTCCCTT | 59.625 | 57.895 | 0.00 | 0.00 | 0.00 | 3.95 |
1654 | 4616 | 2.943978 | CGAACCTGCCGAACTCCCT | 61.944 | 63.158 | 0.00 | 0.00 | 0.00 | 4.20 |
1725 | 4687 | 2.363276 | TACCGGTGGCTGATCCGT | 60.363 | 61.111 | 19.93 | 0.00 | 44.51 | 4.69 |
1746 | 4708 | 2.216898 | AGGCAGAAGATTATGAAGCGC | 58.783 | 47.619 | 0.00 | 0.00 | 0.00 | 5.92 |
1749 | 4711 | 3.247173 | GCACGAGGCAGAAGATTATGAAG | 59.753 | 47.826 | 0.00 | 0.00 | 43.97 | 3.02 |
1901 | 4864 | 9.212641 | CATCATGGATCGTTAGAAATACTTGAT | 57.787 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1902 | 4865 | 8.421002 | TCATCATGGATCGTTAGAAATACTTGA | 58.579 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
1903 | 4866 | 8.593492 | TCATCATGGATCGTTAGAAATACTTG | 57.407 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
1904 | 4867 | 9.046296 | GTTCATCATGGATCGTTAGAAATACTT | 57.954 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
1912 | 4882 | 6.238211 | GGTGAAAGTTCATCATGGATCGTTAG | 60.238 | 42.308 | 0.00 | 0.00 | 38.20 | 2.34 |
1916 | 4886 | 3.940852 | TGGTGAAAGTTCATCATGGATCG | 59.059 | 43.478 | 2.82 | 0.00 | 42.97 | 3.69 |
1930 | 4900 | 8.286800 | TGAAATTACAGAATTACGTGGTGAAAG | 58.713 | 33.333 | 0.00 | 0.00 | 34.01 | 2.62 |
1935 | 4905 | 8.308931 | TCTACTGAAATTACAGAATTACGTGGT | 58.691 | 33.333 | 0.00 | 0.00 | 40.63 | 4.16 |
1949 | 4919 | 9.443323 | TCGATGGAAATTTGTCTACTGAAATTA | 57.557 | 29.630 | 0.00 | 0.00 | 32.66 | 1.40 |
1962 | 4932 | 5.611796 | TTGTCTGACTCGATGGAAATTTG | 57.388 | 39.130 | 9.51 | 0.00 | 0.00 | 2.32 |
2006 | 4990 | 2.291153 | ACTTGATTGCTACACCCATGCT | 60.291 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
2007 | 4991 | 2.094675 | ACTTGATTGCTACACCCATGC | 58.905 | 47.619 | 0.00 | 0.00 | 0.00 | 4.06 |
2008 | 4992 | 3.181507 | CGAACTTGATTGCTACACCCATG | 60.182 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
2009 | 4993 | 3.009723 | CGAACTTGATTGCTACACCCAT | 58.990 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
2010 | 4994 | 2.422597 | CGAACTTGATTGCTACACCCA | 58.577 | 47.619 | 0.00 | 0.00 | 0.00 | 4.51 |
2011 | 4995 | 1.737793 | CCGAACTTGATTGCTACACCC | 59.262 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
2012 | 4996 | 2.695359 | TCCGAACTTGATTGCTACACC | 58.305 | 47.619 | 0.00 | 0.00 | 0.00 | 4.16 |
2013 | 4997 | 5.350365 | TGTTATCCGAACTTGATTGCTACAC | 59.650 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2014 | 4998 | 5.483811 | TGTTATCCGAACTTGATTGCTACA | 58.516 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
2015 | 4999 | 6.417191 | TTGTTATCCGAACTTGATTGCTAC | 57.583 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
2016 | 5000 | 7.624360 | AATTGTTATCCGAACTTGATTGCTA | 57.376 | 32.000 | 0.00 | 0.00 | 0.00 | 3.49 |
2017 | 5001 | 6.515272 | AATTGTTATCCGAACTTGATTGCT | 57.485 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
2018 | 5002 | 7.915397 | ACATAATTGTTATCCGAACTTGATTGC | 59.085 | 33.333 | 0.00 | 0.00 | 29.55 | 3.56 |
2019 | 5003 | 9.225201 | CACATAATTGTTATCCGAACTTGATTG | 57.775 | 33.333 | 0.00 | 0.00 | 32.34 | 2.67 |
2020 | 5004 | 8.405531 | CCACATAATTGTTATCCGAACTTGATT | 58.594 | 33.333 | 0.00 | 0.00 | 32.34 | 2.57 |
2021 | 5005 | 7.556275 | ACCACATAATTGTTATCCGAACTTGAT | 59.444 | 33.333 | 0.00 | 0.00 | 32.34 | 2.57 |
2080 | 5070 | 7.193377 | TGTGTATGACATGAACATGATATGC | 57.807 | 36.000 | 19.56 | 15.28 | 41.20 | 3.14 |
2082 | 5072 | 9.788889 | ATCTTGTGTATGACATGAACATGATAT | 57.211 | 29.630 | 19.56 | 14.48 | 40.92 | 1.63 |
2099 | 5089 | 6.486320 | TGCTTTTGATGACAGAATCTTGTGTA | 59.514 | 34.615 | 0.00 | 0.00 | 34.53 | 2.90 |
2207 | 6869 | 9.764363 | CTCTGGATAAAACTTATATGCACACTA | 57.236 | 33.333 | 0.00 | 0.00 | 29.56 | 2.74 |
2226 | 6888 | 9.490379 | GGACGTAATAATATTTTGACTCTGGAT | 57.510 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2227 | 6889 | 8.479689 | TGGACGTAATAATATTTTGACTCTGGA | 58.520 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
2228 | 6890 | 8.657074 | TGGACGTAATAATATTTTGACTCTGG | 57.343 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
2254 | 6916 | 7.537596 | TTCCAATGAACATGTCCAACTAATT | 57.462 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2255 | 6917 | 7.537596 | TTTCCAATGAACATGTCCAACTAAT | 57.462 | 32.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2280 | 6942 | 1.830847 | GACACGGGGGCCTGTTTTT | 60.831 | 57.895 | 0.84 | 0.00 | 32.44 | 1.94 |
2345 | 7705 | 2.341101 | GGAGACGACGGAGGAAGCA | 61.341 | 63.158 | 0.00 | 0.00 | 0.00 | 3.91 |
2420 | 7956 | 0.335361 | TCCTAGAGAAGAAGCCCCGT | 59.665 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
2477 | 8014 | 2.434884 | CGAGCTTGCCACGACCAT | 60.435 | 61.111 | 0.00 | 0.00 | 0.00 | 3.55 |
2621 | 8202 | 2.665000 | CCCATGTCGTGCCAGACT | 59.335 | 61.111 | 9.57 | 0.00 | 41.47 | 3.24 |
2632 | 8213 | 0.468585 | CATACCTGCCATGCCCATGT | 60.469 | 55.000 | 7.42 | 0.00 | 37.11 | 3.21 |
2635 | 8216 | 2.602438 | CCATACCTGCCATGCCCA | 59.398 | 61.111 | 0.00 | 0.00 | 0.00 | 5.36 |
2649 | 8230 | 2.685366 | CCACCAGGTCATGCCCAT | 59.315 | 61.111 | 0.00 | 0.00 | 38.26 | 4.00 |
2677 | 8258 | 2.219875 | CCCTCTGGCCGCATATCCT | 61.220 | 63.158 | 0.00 | 0.00 | 0.00 | 3.24 |
2681 | 8262 | 2.844362 | CTCCCCTCTGGCCGCATA | 60.844 | 66.667 | 0.00 | 0.00 | 0.00 | 3.14 |
2705 | 8298 | 4.320456 | ACTGCGACCTGGCCACTG | 62.320 | 66.667 | 0.00 | 0.00 | 0.00 | 3.66 |
2706 | 8299 | 4.320456 | CACTGCGACCTGGCCACT | 62.320 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
2720 | 8313 | 2.842462 | TCCCCACACAGACGCACT | 60.842 | 61.111 | 0.00 | 0.00 | 0.00 | 4.40 |
2736 | 8329 | 1.905512 | ACACCTTATGTCGGCCCTC | 59.094 | 57.895 | 0.00 | 0.00 | 36.54 | 4.30 |
2748 | 8341 | 2.360350 | CATGCCGCTGGACACCTT | 60.360 | 61.111 | 0.00 | 0.00 | 0.00 | 3.50 |
2832 | 8425 | 1.807814 | AACTGTGTTGTCTCCTCCCT | 58.192 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2894 | 8488 | 3.112709 | GCTCGACGCCAGAACCAC | 61.113 | 66.667 | 0.00 | 0.00 | 0.00 | 4.16 |
2999 | 8593 | 4.314440 | GCCTCAGGTGCACCGACA | 62.314 | 66.667 | 29.68 | 16.32 | 42.08 | 4.35 |
3053 | 8647 | 1.025113 | GGACAAAAGAGCGCTACCCC | 61.025 | 60.000 | 11.50 | 0.00 | 0.00 | 4.95 |
3111 | 9919 | 3.231889 | CAGAGCCACTGGACGCAGT | 62.232 | 63.158 | 0.00 | 0.00 | 42.39 | 4.40 |
3135 | 9943 | 1.753649 | CAGATCCATCCACAGTCGTCT | 59.246 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
3158 | 9966 | 0.897621 | GCCAAACCTCCATCAAAGGG | 59.102 | 55.000 | 0.00 | 0.00 | 38.29 | 3.95 |
3172 | 9981 | 3.842925 | GAGACCACCAGCGGCCAAA | 62.843 | 63.158 | 2.24 | 0.00 | 0.00 | 3.28 |
3231 | 10040 | 4.812476 | CGAAGCCGCCCATCGACA | 62.812 | 66.667 | 5.20 | 0.00 | 41.67 | 4.35 |
3335 | 10149 | 2.092211 | GTCATAACACAAAGCCGAGACG | 59.908 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3540 | 10917 | 3.791586 | TCCCATTCGCCGATGCCA | 61.792 | 61.111 | 0.00 | 0.00 | 0.00 | 4.92 |
3552 | 10929 | 3.809013 | GCCATCCACCGGTCCCAT | 61.809 | 66.667 | 2.59 | 0.00 | 0.00 | 4.00 |
3601 | 10978 | 1.069823 | GACATCGCTCCACCATCATCT | 59.930 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
3645 | 11026 | 2.185608 | GCTGGAGAAGAGCCGACC | 59.814 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
3842 | 11418 | 5.943349 | TGAATGAAGATCCATGCCAAAAT | 57.057 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
3951 | 11535 | 2.523325 | TCACTCCTCCTCCTCTTGAG | 57.477 | 55.000 | 0.00 | 0.00 | 41.07 | 3.02 |
3953 | 11537 | 2.430332 | GTCATCACTCCTCCTCCTCTTG | 59.570 | 54.545 | 0.00 | 0.00 | 0.00 | 3.02 |
3955 | 11539 | 1.409521 | CGTCATCACTCCTCCTCCTCT | 60.410 | 57.143 | 0.00 | 0.00 | 0.00 | 3.69 |
3957 | 11541 | 0.626382 | TCGTCATCACTCCTCCTCCT | 59.374 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3958 | 11542 | 1.339610 | CATCGTCATCACTCCTCCTCC | 59.660 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
3986 | 11576 | 1.451936 | GCCTCACCCAGACAACACT | 59.548 | 57.895 | 0.00 | 0.00 | 0.00 | 3.55 |
4009 | 11599 | 0.538057 | CCTGCACACACCACTCCAAT | 60.538 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4025 | 11615 | 2.337583 | CGACACACACAAGATACCCTG | 58.662 | 52.381 | 0.00 | 0.00 | 0.00 | 4.45 |
4026 | 11616 | 1.337823 | GCGACACACACAAGATACCCT | 60.338 | 52.381 | 0.00 | 0.00 | 0.00 | 4.34 |
4083 | 11677 | 5.918011 | GCGAAAACCAGATTGTCATGTTAAA | 59.082 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
4089 | 11683 | 2.416547 | CGAGCGAAAACCAGATTGTCAT | 59.583 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
4090 | 11684 | 1.798223 | CGAGCGAAAACCAGATTGTCA | 59.202 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
4182 | 11776 | 9.567776 | TGTTTGGTCAAAATAGAGATACTTTGA | 57.432 | 29.630 | 0.00 | 0.00 | 35.88 | 2.69 |
4213 | 11807 | 7.007313 | CATTGTGAATGCTGAAACTGTTTTT | 57.993 | 32.000 | 7.28 | 0.00 | 31.20 | 1.94 |
4214 | 11808 | 6.592798 | CATTGTGAATGCTGAAACTGTTTT | 57.407 | 33.333 | 7.28 | 0.00 | 31.20 | 2.43 |
4229 | 11823 | 9.747293 | CACAATACCAAATATATGCATTGTGAA | 57.253 | 29.630 | 20.25 | 0.00 | 44.53 | 3.18 |
4230 | 11824 | 8.358895 | CCACAATACCAAATATATGCATTGTGA | 58.641 | 33.333 | 23.25 | 0.00 | 44.53 | 3.58 |
4231 | 11825 | 8.358895 | TCCACAATACCAAATATATGCATTGTG | 58.641 | 33.333 | 3.54 | 19.16 | 43.26 | 3.33 |
4232 | 11826 | 8.476064 | TCCACAATACCAAATATATGCATTGT | 57.524 | 30.769 | 3.54 | 0.00 | 36.07 | 2.71 |
4233 | 11827 | 9.361315 | CATCCACAATACCAAATATATGCATTG | 57.639 | 33.333 | 3.54 | 0.00 | 32.17 | 2.82 |
4234 | 11828 | 9.092338 | ACATCCACAATACCAAATATATGCATT | 57.908 | 29.630 | 3.54 | 0.00 | 0.00 | 3.56 |
4235 | 11829 | 8.654485 | ACATCCACAATACCAAATATATGCAT | 57.346 | 30.769 | 3.79 | 3.79 | 0.00 | 3.96 |
4236 | 11830 | 8.358895 | CAACATCCACAATACCAAATATATGCA | 58.641 | 33.333 | 0.00 | 0.00 | 0.00 | 3.96 |
4237 | 11831 | 8.575589 | TCAACATCCACAATACCAAATATATGC | 58.424 | 33.333 | 0.00 | 0.00 | 0.00 | 3.14 |
4245 | 11839 | 8.811017 | ACAAAATATCAACATCCACAATACCAA | 58.189 | 29.630 | 0.00 | 0.00 | 0.00 | 3.67 |
4287 | 11881 | 9.429359 | TGTGTCAATTCAAACATTACAAAGTTT | 57.571 | 25.926 | 0.00 | 0.00 | 38.40 | 2.66 |
4288 | 11882 | 8.994429 | TGTGTCAATTCAAACATTACAAAGTT | 57.006 | 26.923 | 0.00 | 0.00 | 0.00 | 2.66 |
4289 | 11883 | 8.994429 | TTGTGTCAATTCAAACATTACAAAGT | 57.006 | 26.923 | 0.00 | 0.00 | 0.00 | 2.66 |
4299 | 11893 | 9.353999 | GGGTATTAGATTTGTGTCAATTCAAAC | 57.646 | 33.333 | 0.00 | 0.00 | 36.58 | 2.93 |
4300 | 11894 | 8.240682 | CGGGTATTAGATTTGTGTCAATTCAAA | 58.759 | 33.333 | 6.99 | 0.00 | 37.82 | 2.69 |
4302 | 11896 | 7.106890 | TCGGGTATTAGATTTGTGTCAATTCA | 58.893 | 34.615 | 6.99 | 0.00 | 0.00 | 2.57 |
4303 | 11897 | 7.548196 | TCGGGTATTAGATTTGTGTCAATTC | 57.452 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
4304 | 11898 | 7.610305 | ACTTCGGGTATTAGATTTGTGTCAATT | 59.390 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
4306 | 11900 | 6.469410 | ACTTCGGGTATTAGATTTGTGTCAA | 58.531 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4307 | 11901 | 6.045072 | ACTTCGGGTATTAGATTTGTGTCA | 57.955 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
4308 | 11902 | 8.483307 | TTTACTTCGGGTATTAGATTTGTGTC | 57.517 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
4309 | 11903 | 8.851541 | TTTTACTTCGGGTATTAGATTTGTGT | 57.148 | 30.769 | 0.00 | 0.00 | 0.00 | 3.72 |
4335 | 11929 | 9.796180 | GTCTATATATATACTCCATCCGGTCTT | 57.204 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
4336 | 11930 | 8.946248 | TGTCTATATATATACTCCATCCGGTCT | 58.054 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
4337 | 11931 | 9.742144 | ATGTCTATATATATACTCCATCCGGTC | 57.258 | 37.037 | 0.00 | 0.00 | 0.00 | 4.79 |
4338 | 11932 | 9.521841 | CATGTCTATATATATACTCCATCCGGT | 57.478 | 37.037 | 0.00 | 0.00 | 0.00 | 5.28 |
4339 | 11933 | 9.740710 | TCATGTCTATATATATACTCCATCCGG | 57.259 | 37.037 | 0.00 | 0.00 | 0.00 | 5.14 |
4355 | 11949 | 9.631452 | GATCATGTCTTTTCGATCATGTCTATA | 57.369 | 33.333 | 0.00 | 0.00 | 38.78 | 1.31 |
4356 | 11950 | 7.328005 | CGATCATGTCTTTTCGATCATGTCTAT | 59.672 | 37.037 | 0.00 | 0.00 | 38.78 | 1.98 |
4357 | 11951 | 6.638468 | CGATCATGTCTTTTCGATCATGTCTA | 59.362 | 38.462 | 0.00 | 0.00 | 38.78 | 2.59 |
4358 | 11952 | 5.461407 | CGATCATGTCTTTTCGATCATGTCT | 59.539 | 40.000 | 0.00 | 0.00 | 38.78 | 3.41 |
4359 | 11953 | 5.460091 | TCGATCATGTCTTTTCGATCATGTC | 59.540 | 40.000 | 0.00 | 0.00 | 38.78 | 3.06 |
4360 | 11954 | 5.351458 | TCGATCATGTCTTTTCGATCATGT | 58.649 | 37.500 | 0.00 | 0.00 | 38.78 | 3.21 |
4361 | 11955 | 5.895216 | TCGATCATGTCTTTTCGATCATG | 57.105 | 39.130 | 0.00 | 0.00 | 35.85 | 3.07 |
4362 | 11956 | 6.908870 | TTTCGATCATGTCTTTTCGATCAT | 57.091 | 33.333 | 0.00 | 0.00 | 39.99 | 2.45 |
4363 | 11957 | 6.720012 | TTTTCGATCATGTCTTTTCGATCA | 57.280 | 33.333 | 0.00 | 0.00 | 39.99 | 2.92 |
4364 | 11958 | 6.630443 | CCATTTTCGATCATGTCTTTTCGATC | 59.370 | 38.462 | 0.00 | 0.00 | 39.99 | 3.69 |
4365 | 11959 | 6.458751 | CCCATTTTCGATCATGTCTTTTCGAT | 60.459 | 38.462 | 0.00 | 0.00 | 39.99 | 3.59 |
4366 | 11960 | 5.163764 | CCCATTTTCGATCATGTCTTTTCGA | 60.164 | 40.000 | 0.00 | 0.00 | 38.71 | 3.71 |
4367 | 11961 | 5.030295 | CCCATTTTCGATCATGTCTTTTCG | 58.970 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
4368 | 11962 | 5.125417 | TCCCCATTTTCGATCATGTCTTTTC | 59.875 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
4369 | 11963 | 5.016173 | TCCCCATTTTCGATCATGTCTTTT | 58.984 | 37.500 | 0.00 | 0.00 | 0.00 | 2.27 |
4370 | 11964 | 4.599041 | TCCCCATTTTCGATCATGTCTTT | 58.401 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
4371 | 11965 | 4.235079 | TCCCCATTTTCGATCATGTCTT | 57.765 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
4372 | 11966 | 3.931907 | TCCCCATTTTCGATCATGTCT | 57.068 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
4373 | 11967 | 6.824305 | ATTATCCCCATTTTCGATCATGTC | 57.176 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
4374 | 11968 | 8.163408 | TCTAATTATCCCCATTTTCGATCATGT | 58.837 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
4375 | 11969 | 8.565896 | TCTAATTATCCCCATTTTCGATCATG | 57.434 | 34.615 | 0.00 | 0.00 | 0.00 | 3.07 |
4377 | 11971 | 9.231297 | GATTCTAATTATCCCCATTTTCGATCA | 57.769 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
4414 | 12578 | 6.292221 | CGACAGATGCTAATCAAATGAGACTG | 60.292 | 42.308 | 0.00 | 0.00 | 35.03 | 3.51 |
4467 | 15205 | 2.289195 | TGTTAGGTTCACGGATGACACC | 60.289 | 50.000 | 0.00 | 0.00 | 36.78 | 4.16 |
4479 | 15217 | 3.367395 | GCAGGGATTTTGCTGTTAGGTTC | 60.367 | 47.826 | 0.00 | 0.00 | 38.51 | 3.62 |
4494 | 15232 | 2.042639 | GGTGGCCAATGCAGGGAT | 60.043 | 61.111 | 7.24 | 0.00 | 40.13 | 3.85 |
4509 | 15247 | 2.267006 | CTCTGCTGGCATCGTGGT | 59.733 | 61.111 | 0.00 | 0.00 | 0.00 | 4.16 |
4510 | 15248 | 3.200593 | GCTCTGCTGGCATCGTGG | 61.201 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
4511 | 15249 | 2.435410 | TGCTCTGCTGGCATCGTG | 60.435 | 61.111 | 0.00 | 0.00 | 34.56 | 4.35 |
4588 | 15326 | 2.203832 | TGGAGGCAGACCAGCAGA | 60.204 | 61.111 | 0.00 | 0.00 | 39.06 | 4.26 |
4806 | 15544 | 1.441515 | ATGTTGTCGTCGTCGTCGG | 60.442 | 57.895 | 11.74 | 0.00 | 38.33 | 4.79 |
4810 | 15548 | 1.696644 | GCTCATGTTGTCGTCGTCG | 59.303 | 57.895 | 0.00 | 0.00 | 38.55 | 5.12 |
4921 | 15695 | 1.200948 | CCAACAAGAAGCTAAGCTGGC | 59.799 | 52.381 | 4.02 | 4.02 | 39.62 | 4.85 |
4964 | 15738 | 3.118038 | TCCAGGTAGTTCACTGCAAAAGT | 60.118 | 43.478 | 0.00 | 0.00 | 40.93 | 2.66 |
4970 | 15744 | 2.037251 | TGTTCTCCAGGTAGTTCACTGC | 59.963 | 50.000 | 0.00 | 0.00 | 33.43 | 4.40 |
5002 | 15776 | 1.138047 | CGAAGCCGTACACCGTGATC | 61.138 | 60.000 | 5.28 | 0.00 | 33.66 | 2.92 |
5178 | 15962 | 1.846782 | GTAGTGAACTATGTGCGCTCG | 59.153 | 52.381 | 9.73 | 0.00 | 33.52 | 5.03 |
5211 | 15995 | 3.363477 | CGATGTGTGTGTTTTATGCGTGA | 60.363 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
5282 | 16066 | 5.578727 | ACTGCACAACTAATTTTCGCAAAAA | 59.421 | 32.000 | 0.00 | 0.00 | 38.66 | 1.94 |
5283 | 16067 | 5.005203 | CACTGCACAACTAATTTTCGCAAAA | 59.995 | 36.000 | 0.00 | 0.00 | 34.41 | 2.44 |
5284 | 16068 | 4.502282 | CACTGCACAACTAATTTTCGCAAA | 59.498 | 37.500 | 0.00 | 0.00 | 0.00 | 3.68 |
5285 | 16069 | 4.041049 | CACTGCACAACTAATTTTCGCAA | 58.959 | 39.130 | 0.00 | 0.00 | 0.00 | 4.85 |
5286 | 16070 | 3.066064 | ACACTGCACAACTAATTTTCGCA | 59.934 | 39.130 | 0.00 | 0.00 | 0.00 | 5.10 |
5287 | 16071 | 3.628017 | ACACTGCACAACTAATTTTCGC | 58.372 | 40.909 | 0.00 | 0.00 | 0.00 | 4.70 |
5288 | 16072 | 6.567769 | AAAACACTGCACAACTAATTTTCG | 57.432 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
5350 | 16134 | 3.120442 | ACGTGCACGGCTAATACTTTTTC | 60.120 | 43.478 | 39.21 | 0.00 | 44.95 | 2.29 |
5392 | 16176 | 8.959548 | CCTTTGCATCTAATATTGCCACATATA | 58.040 | 33.333 | 0.00 | 0.00 | 38.08 | 0.86 |
5441 | 16225 | 7.378966 | CAGAAGTTGAGGACTAATGTTACTCA | 58.621 | 38.462 | 0.00 | 0.00 | 37.72 | 3.41 |
5448 | 16232 | 3.937706 | CCTGCAGAAGTTGAGGACTAATG | 59.062 | 47.826 | 17.39 | 0.00 | 37.72 | 1.90 |
5494 | 16278 | 2.432874 | CCGTGTACCCTGATATGGTTCA | 59.567 | 50.000 | 0.00 | 0.00 | 37.31 | 3.18 |
5495 | 16279 | 2.696707 | TCCGTGTACCCTGATATGGTTC | 59.303 | 50.000 | 0.00 | 0.00 | 37.31 | 3.62 |
5497 | 16281 | 2.464796 | TCCGTGTACCCTGATATGGT | 57.535 | 50.000 | 0.00 | 0.00 | 39.97 | 3.55 |
5498 | 16282 | 4.466370 | ACATATCCGTGTACCCTGATATGG | 59.534 | 45.833 | 23.48 | 12.33 | 45.75 | 2.74 |
5499 | 16283 | 5.419155 | AGACATATCCGTGTACCCTGATATG | 59.581 | 44.000 | 20.37 | 20.37 | 46.38 | 1.78 |
5501 | 16285 | 4.994282 | AGACATATCCGTGTACCCTGATA | 58.006 | 43.478 | 0.00 | 0.00 | 31.16 | 2.15 |
5518 | 17851 | 7.209471 | TGTAAAGAAATTACGCCAAAGACAT | 57.791 | 32.000 | 0.00 | 0.00 | 45.72 | 3.06 |
5519 | 17852 | 6.621316 | TGTAAAGAAATTACGCCAAAGACA | 57.379 | 33.333 | 0.00 | 0.00 | 45.72 | 3.41 |
5520 | 17853 | 7.302524 | TCATGTAAAGAAATTACGCCAAAGAC | 58.697 | 34.615 | 0.00 | 0.00 | 45.72 | 3.01 |
5521 | 17854 | 7.441890 | TCATGTAAAGAAATTACGCCAAAGA | 57.558 | 32.000 | 0.00 | 0.00 | 45.72 | 2.52 |
5522 | 17855 | 8.514136 | TTTCATGTAAAGAAATTACGCCAAAG | 57.486 | 30.769 | 0.00 | 0.00 | 45.72 | 2.77 |
5523 | 17856 | 8.873215 | TTTTCATGTAAAGAAATTACGCCAAA | 57.127 | 26.923 | 0.00 | 0.00 | 45.72 | 3.28 |
5583 | 17918 | 7.914427 | ACTGTAGTAAATCCAGTGGATGATA | 57.086 | 36.000 | 25.51 | 17.71 | 42.27 | 2.15 |
5593 | 17928 | 6.978261 | AGGGAGTAGTACTGTAGTAAATCCA | 58.022 | 40.000 | 23.44 | 0.00 | 31.52 | 3.41 |
5604 | 17939 | 3.643237 | TGGAATGGAGGGAGTAGTACTG | 58.357 | 50.000 | 7.76 | 0.00 | 0.00 | 2.74 |
5608 | 17943 | 5.731678 | AGTAATTTGGAATGGAGGGAGTAGT | 59.268 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
5609 | 17944 | 6.253946 | AGTAATTTGGAATGGAGGGAGTAG | 57.746 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
5610 | 17945 | 5.163343 | CGAGTAATTTGGAATGGAGGGAGTA | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
5611 | 17946 | 4.384208 | CGAGTAATTTGGAATGGAGGGAGT | 60.384 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
5612 | 17947 | 4.130118 | CGAGTAATTTGGAATGGAGGGAG | 58.870 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
5613 | 17948 | 3.521937 | ACGAGTAATTTGGAATGGAGGGA | 59.478 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
5614 | 17949 | 3.877508 | GACGAGTAATTTGGAATGGAGGG | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
5615 | 17950 | 3.555956 | CGACGAGTAATTTGGAATGGAGG | 59.444 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
5616 | 17951 | 4.032900 | CACGACGAGTAATTTGGAATGGAG | 59.967 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
5617 | 17952 | 3.930229 | CACGACGAGTAATTTGGAATGGA | 59.070 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
5618 | 17953 | 3.063452 | CCACGACGAGTAATTTGGAATGG | 59.937 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
5619 | 17954 | 3.682858 | ACCACGACGAGTAATTTGGAATG | 59.317 | 43.478 | 0.00 | 0.00 | 0.00 | 2.67 |
5620 | 17955 | 3.934068 | ACCACGACGAGTAATTTGGAAT | 58.066 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
5621 | 17956 | 3.389925 | ACCACGACGAGTAATTTGGAA | 57.610 | 42.857 | 0.00 | 0.00 | 0.00 | 3.53 |
5622 | 17957 | 3.389925 | AACCACGACGAGTAATTTGGA | 57.610 | 42.857 | 0.00 | 0.00 | 0.00 | 3.53 |
5623 | 17958 | 4.477302 | AAAACCACGACGAGTAATTTGG | 57.523 | 40.909 | 0.00 | 0.00 | 0.00 | 3.28 |
5624 | 17959 | 6.219302 | ACTAAAACCACGACGAGTAATTTG | 57.781 | 37.500 | 0.00 | 2.39 | 0.00 | 2.32 |
5625 | 17960 | 6.479660 | TGAACTAAAACCACGACGAGTAATTT | 59.520 | 34.615 | 0.00 | 0.34 | 0.00 | 1.82 |
5626 | 17961 | 5.984926 | TGAACTAAAACCACGACGAGTAATT | 59.015 | 36.000 | 0.00 | 1.08 | 0.00 | 1.40 |
5627 | 17962 | 5.531634 | TGAACTAAAACCACGACGAGTAAT | 58.468 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
5628 | 17963 | 4.930963 | TGAACTAAAACCACGACGAGTAA | 58.069 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
5629 | 17964 | 4.566545 | TGAACTAAAACCACGACGAGTA | 57.433 | 40.909 | 0.00 | 0.00 | 0.00 | 2.59 |
5630 | 17965 | 3.441496 | TGAACTAAAACCACGACGAGT | 57.559 | 42.857 | 0.00 | 0.00 | 0.00 | 4.18 |
5631 | 17966 | 4.782252 | TTTGAACTAAAACCACGACGAG | 57.218 | 40.909 | 0.00 | 0.00 | 0.00 | 4.18 |
5632 | 17967 | 5.738118 | ATTTTGAACTAAAACCACGACGA | 57.262 | 34.783 | 0.00 | 0.00 | 40.80 | 4.20 |
5633 | 17968 | 6.469595 | TCAAATTTTGAACTAAAACCACGACG | 59.530 | 34.615 | 9.36 | 0.00 | 40.80 | 5.12 |
5634 | 17969 | 7.743520 | TCAAATTTTGAACTAAAACCACGAC | 57.256 | 32.000 | 9.36 | 0.00 | 40.80 | 4.34 |
5647 | 17982 | 7.008447 | CGTCGTGGTTTTAGTTCAAATTTTGAA | 59.992 | 33.333 | 18.29 | 18.29 | 46.68 | 2.69 |
5648 | 17983 | 6.469595 | CGTCGTGGTTTTAGTTCAAATTTTGA | 59.530 | 34.615 | 7.74 | 7.74 | 38.04 | 2.69 |
5649 | 17984 | 6.469595 | TCGTCGTGGTTTTAGTTCAAATTTTG | 59.530 | 34.615 | 2.59 | 2.59 | 0.00 | 2.44 |
5650 | 17985 | 6.553524 | TCGTCGTGGTTTTAGTTCAAATTTT | 58.446 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
5651 | 17986 | 6.121613 | TCGTCGTGGTTTTAGTTCAAATTT | 57.878 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
5652 | 17987 | 5.295045 | ACTCGTCGTGGTTTTAGTTCAAATT | 59.705 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
5653 | 17988 | 4.812626 | ACTCGTCGTGGTTTTAGTTCAAAT | 59.187 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
5654 | 17989 | 4.183101 | ACTCGTCGTGGTTTTAGTTCAAA | 58.817 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
5655 | 17990 | 3.784338 | ACTCGTCGTGGTTTTAGTTCAA | 58.216 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
5656 | 17991 | 3.441496 | ACTCGTCGTGGTTTTAGTTCA | 57.559 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
5657 | 17992 | 6.457851 | AATTACTCGTCGTGGTTTTAGTTC | 57.542 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
5658 | 17993 | 6.293027 | CCAAATTACTCGTCGTGGTTTTAGTT | 60.293 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
5659 | 17994 | 5.178067 | CCAAATTACTCGTCGTGGTTTTAGT | 59.822 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
5660 | 17995 | 5.406175 | TCCAAATTACTCGTCGTGGTTTTAG | 59.594 | 40.000 | 0.00 | 0.00 | 0.00 | 1.85 |
5661 | 17996 | 5.295950 | TCCAAATTACTCGTCGTGGTTTTA | 58.704 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
5662 | 17997 | 4.128643 | TCCAAATTACTCGTCGTGGTTTT | 58.871 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
5663 | 17998 | 3.731089 | TCCAAATTACTCGTCGTGGTTT | 58.269 | 40.909 | 0.00 | 0.00 | 0.00 | 3.27 |
5664 | 17999 | 3.389925 | TCCAAATTACTCGTCGTGGTT | 57.610 | 42.857 | 0.00 | 0.00 | 0.00 | 3.67 |
5665 | 18000 | 3.062042 | GTTCCAAATTACTCGTCGTGGT | 58.938 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
5666 | 18001 | 2.091588 | CGTTCCAAATTACTCGTCGTGG | 59.908 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
5667 | 18002 | 2.727798 | ACGTTCCAAATTACTCGTCGTG | 59.272 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
5668 | 18003 | 3.017265 | ACGTTCCAAATTACTCGTCGT | 57.983 | 42.857 | 0.00 | 0.00 | 0.00 | 4.34 |
5669 | 18004 | 3.182972 | ACAACGTTCCAAATTACTCGTCG | 59.817 | 43.478 | 0.00 | 0.00 | 0.00 | 5.12 |
5670 | 18005 | 4.025480 | ACACAACGTTCCAAATTACTCGTC | 60.025 | 41.667 | 0.00 | 0.00 | 0.00 | 4.20 |
5671 | 18006 | 3.872771 | ACACAACGTTCCAAATTACTCGT | 59.127 | 39.130 | 0.00 | 0.00 | 0.00 | 4.18 |
5672 | 18007 | 4.208355 | CACACAACGTTCCAAATTACTCG | 58.792 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
5673 | 18008 | 4.967575 | CACACACAACGTTCCAAATTACTC | 59.032 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
5674 | 18009 | 4.732355 | GCACACACAACGTTCCAAATTACT | 60.732 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
5675 | 18010 | 3.484285 | GCACACACAACGTTCCAAATTAC | 59.516 | 43.478 | 0.00 | 0.00 | 0.00 | 1.89 |
5676 | 18011 | 3.378742 | AGCACACACAACGTTCCAAATTA | 59.621 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
5677 | 18012 | 2.165437 | AGCACACACAACGTTCCAAATT | 59.835 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
5678 | 18013 | 1.748493 | AGCACACACAACGTTCCAAAT | 59.252 | 42.857 | 0.00 | 0.00 | 0.00 | 2.32 |
5679 | 18014 | 1.169577 | AGCACACACAACGTTCCAAA | 58.830 | 45.000 | 0.00 | 0.00 | 0.00 | 3.28 |
5682 | 18017 | 1.544686 | CAAAGCACACACAACGTTCC | 58.455 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
5684 | 18019 | 0.525761 | AGCAAAGCACACACAACGTT | 59.474 | 45.000 | 0.00 | 0.00 | 0.00 | 3.99 |
5686 | 18021 | 1.473857 | GCAGCAAAGCACACACAACG | 61.474 | 55.000 | 0.00 | 0.00 | 0.00 | 4.10 |
5693 | 18028 | 0.806884 | GCAACTTGCAGCAAAGCACA | 60.807 | 50.000 | 9.65 | 0.00 | 45.61 | 4.57 |
5695 | 18030 | 4.423764 | GCAACTTGCAGCAAAGCA | 57.576 | 50.000 | 9.65 | 0.00 | 44.26 | 3.91 |
5704 | 18039 | 3.385193 | AACCCAATAACAGCAACTTGC | 57.615 | 42.857 | 5.55 | 5.55 | 45.46 | 4.01 |
5706 | 18041 | 5.869649 | AAGAAACCCAATAACAGCAACTT | 57.130 | 34.783 | 0.00 | 0.00 | 0.00 | 2.66 |
5707 | 18042 | 6.969993 | TTAAGAAACCCAATAACAGCAACT | 57.030 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
5981 | 18327 | 6.096282 | CCACCGTCCAAACTAAATATTCCATT | 59.904 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
6000 | 18346 | 1.054406 | CCATCATCTACCCCCACCGT | 61.054 | 60.000 | 0.00 | 0.00 | 0.00 | 4.83 |
6005 | 18351 | 1.417890 | CACACTCCATCATCTACCCCC | 59.582 | 57.143 | 0.00 | 0.00 | 0.00 | 5.40 |
6058 | 18404 | 1.734465 | CATGACCACTCGAGAAAAGCC | 59.266 | 52.381 | 21.68 | 3.55 | 0.00 | 4.35 |
6067 | 18413 | 2.193447 | CGGATAACACATGACCACTCG | 58.807 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
6069 | 18415 | 1.555075 | AGCGGATAACACATGACCACT | 59.445 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.