Multiple sequence alignment - TraesCS1A01G086500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G086500 chr1A 100.000 5881 0 0 1 5881 73295128 73301008 0.000000e+00 10861
1 TraesCS1A01G086500 chr1B 93.535 2846 109 25 2698 5519 115956489 115959283 0.000000e+00 4167
2 TraesCS1A01G086500 chr1B 95.992 1023 24 4 1694 2701 115955165 115956185 0.000000e+00 1646
3 TraesCS1A01G086500 chr1B 91.697 1096 55 11 573 1648 115954004 115955083 0.000000e+00 1487
4 TraesCS1A01G086500 chr1B 79.291 536 62 26 4 508 115953378 115953895 4.390000e-86 329
5 TraesCS1A01G086500 chr1D 93.472 1685 78 15 3842 5517 73678542 73680203 0.000000e+00 2473
6 TraesCS1A01G086500 chr1D 91.729 1729 80 18 8 1695 73674479 73676185 0.000000e+00 2342
7 TraesCS1A01G086500 chr1D 95.192 1144 34 9 2706 3831 73677351 73678491 0.000000e+00 1788
8 TraesCS1A01G086500 chr1D 95.918 1029 25 5 1694 2707 73676243 73677269 0.000000e+00 1652
9 TraesCS1A01G086500 chrUn 85.016 307 39 7 2209 2512 303649288 303649590 7.400000e-79 305
10 TraesCS1A01G086500 chr7D 85.016 307 39 7 2209 2512 624830850 624831152 7.400000e-79 305
11 TraesCS1A01G086500 chr7A 84.314 306 41 7 2209 2510 720624770 720625072 5.760000e-75 292


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G086500 chr1A 73295128 73301008 5880 False 10861.00 10861 100.00000 1 5881 1 chr1A.!!$F1 5880
1 TraesCS1A01G086500 chr1B 115953378 115959283 5905 False 1907.25 4167 90.12875 4 5519 4 chr1B.!!$F1 5515
2 TraesCS1A01G086500 chr1D 73674479 73680203 5724 False 2063.75 2473 94.07775 8 5517 4 chr1D.!!$F1 5509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 462 0.517316 AAAGAATTGACGTCGGCTGC 59.483 50.000 11.62 0.0 0.00 5.25 F
887 972 1.062587 CCTCGTCGCTTGCCAAATTAG 59.937 52.381 0.00 0.0 0.00 1.73 F
961 1046 1.135859 GCAATTCGTCAGTGCTCAAGG 60.136 52.381 3.13 0.0 35.36 3.61 F
1577 1677 1.206132 TCTGGCGACGATGTATTGGTT 59.794 47.619 0.00 0.0 0.00 3.67 F
2477 2652 1.669440 GTGGTACCGAGCACCTGAA 59.331 57.895 7.57 0.0 46.34 3.02 F
3344 3834 1.196127 CGGAAAAAGCCTGTACCGTTC 59.804 52.381 0.00 0.0 36.38 3.95 F
4568 5117 1.221021 GGGCCTTGTAACTCGAGGG 59.779 63.158 18.41 8.1 45.57 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1441 1526 1.561076 TGCCTGATATCCAGCTGTTGT 59.439 47.619 13.81 0.0 41.57 3.32 R
2362 2537 2.441750 GTCAGCATGGTAGGGGGAAATA 59.558 50.000 0.00 0.0 36.16 1.40 R
2914 3403 3.505680 ACAGCTTAATCATTCGGTTTGCA 59.494 39.130 0.00 0.0 0.00 4.08 R
3053 3542 1.134250 TGCTGGTGTGTACTGCAAGAA 60.134 47.619 0.00 0.0 37.43 2.52 R
4348 4897 1.204704 CTGTGGTCGGCTATCTGAACA 59.795 52.381 0.00 0.0 42.73 3.18 R
4604 5153 0.240945 CTTTACCAGGCCTTGCAACG 59.759 55.000 0.00 0.0 0.00 4.10 R
5775 6327 0.181114 GCTCCCATCCTACACATGCA 59.819 55.000 0.00 0.0 0.00 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 96 1.139853 CAAAAGATCCCCTCTCCTCCG 59.860 57.143 0.00 0.00 31.03 4.63
184 195 4.798682 CCGCCCCCACCCTCTAGT 62.799 72.222 0.00 0.00 0.00 2.57
189 200 2.683933 CCCACCCTCTAGTGCCGT 60.684 66.667 0.00 0.00 36.38 5.68
192 203 3.760035 ACCCTCTAGTGCCGTGCG 61.760 66.667 0.00 0.00 0.00 5.34
200 211 4.382320 GTGCCGTGCGGGGAGTTA 62.382 66.667 12.82 0.00 36.46 2.24
201 212 4.077184 TGCCGTGCGGGGAGTTAG 62.077 66.667 12.82 0.00 35.78 2.34
263 276 0.608035 TTGGTTCGGGATCTTGGTGC 60.608 55.000 0.00 0.00 0.00 5.01
328 346 2.437895 GTAGGCTTGTTCCCCGCC 60.438 66.667 0.00 0.00 44.09 6.13
374 392 5.312120 TCTACTCGATTTGGAGTTGAGTC 57.688 43.478 0.45 0.00 44.65 3.36
389 407 3.570926 TGAGTCGCTTTACAGATTCGT 57.429 42.857 0.00 0.00 0.00 3.85
391 409 2.599082 GAGTCGCTTTACAGATTCGTGG 59.401 50.000 0.00 0.00 0.00 4.94
398 416 2.572191 TACAGATTCGTGGGCGTAAG 57.428 50.000 0.00 0.00 39.49 2.34
428 452 4.993029 ACGTTTTGGTGGAAAGAATTGA 57.007 36.364 0.00 0.00 0.00 2.57
438 462 0.517316 AAAGAATTGACGTCGGCTGC 59.483 50.000 11.62 0.00 0.00 5.25
446 473 2.171489 GACGTCGGCTGCTTGGTTTC 62.171 60.000 0.00 0.00 0.00 2.78
455 482 2.338500 CTGCTTGGTTTCGTAGGTCTC 58.662 52.381 0.00 0.00 0.00 3.36
476 503 6.089685 GTCTCGTCAGTTCCTCTTGTAAATTC 59.910 42.308 0.00 0.00 0.00 2.17
481 513 5.415701 TCAGTTCCTCTTGTAAATTCATGCC 59.584 40.000 0.00 0.00 0.00 4.40
537 600 1.339610 CCCTCTCAGTTCGAGCTATGG 59.660 57.143 0.00 2.11 41.98 2.74
575 655 4.661993 TGTGCTGTCGTGTTCATATTTC 57.338 40.909 0.00 0.00 0.00 2.17
686 766 2.169978 ACGAAAGTAATGCCCCCTAGAC 59.830 50.000 0.00 0.00 46.88 2.59
688 768 3.181454 CGAAAGTAATGCCCCCTAGACAT 60.181 47.826 0.00 0.00 0.00 3.06
689 769 4.390264 GAAAGTAATGCCCCCTAGACATC 58.610 47.826 0.00 0.00 0.00 3.06
690 770 1.971357 AGTAATGCCCCCTAGACATCG 59.029 52.381 0.00 0.00 0.00 3.84
714 799 2.688507 CATCACGTGGTTCTAGTGCTT 58.311 47.619 17.00 0.00 35.97 3.91
773 858 3.571571 TGTTACTTGACGATTGAGACCG 58.428 45.455 0.00 0.00 0.00 4.79
834 919 2.276201 TCCTATGTGGTCATTTTCGCG 58.724 47.619 0.00 0.00 35.70 5.87
840 925 4.587211 TGTGGTCATTTTCGCGTAATAC 57.413 40.909 5.77 1.89 0.00 1.89
887 972 1.062587 CCTCGTCGCTTGCCAAATTAG 59.937 52.381 0.00 0.00 0.00 1.73
961 1046 1.135859 GCAATTCGTCAGTGCTCAAGG 60.136 52.381 3.13 0.00 35.36 3.61
980 1065 5.465390 TCAAGGTGACTCGTATTCTGTTTTG 59.535 40.000 0.00 0.00 42.68 2.44
1044 1129 5.014123 TGGTGAGGGAAACAGATACAAGATT 59.986 40.000 0.00 0.00 0.00 2.40
1059 1144 8.875168 AGATACAAGATTGAAGAGGTTATAGGG 58.125 37.037 0.00 0.00 0.00 3.53
1161 1246 3.503363 TCTTTGAACATGTGTCTGATGCC 59.497 43.478 0.00 0.00 0.00 4.40
1224 1309 4.040461 AGACATCCCGATATCGTGGAAATT 59.960 41.667 27.84 18.95 40.31 1.82
1341 1426 4.111198 CGAATGATGACTTGACTCCAGAG 58.889 47.826 0.00 0.00 0.00 3.35
1454 1539 7.555914 TCTTTTGCATATTACAACAGCTGGATA 59.444 33.333 19.93 8.33 0.00 2.59
1500 1600 6.859420 AAATGGTCAATGTGTTTAAAAGGC 57.141 33.333 0.00 0.00 0.00 4.35
1544 1644 3.998099 TGCCATGTCAAATTCGAAACA 57.002 38.095 0.00 1.82 0.00 2.83
1577 1677 1.206132 TCTGGCGACGATGTATTGGTT 59.794 47.619 0.00 0.00 0.00 3.67
1637 1737 5.811399 TGTTCCACAAACTTTGTAGTCAG 57.189 39.130 6.84 0.00 43.23 3.51
1657 1757 3.643320 CAGGAGAGCAATATGGACCTGTA 59.357 47.826 0.00 0.00 38.67 2.74
1662 1762 6.663953 GGAGAGCAATATGGACCTGTATAGTA 59.336 42.308 0.00 0.00 0.00 1.82
1754 1913 7.440556 CCTAGTAACTGATCAATTCTGTGATGG 59.559 40.741 0.00 0.00 38.38 3.51
1869 2041 2.098614 TCTTTGTGCCAAAAGTCAGCA 58.901 42.857 7.78 0.00 38.16 4.41
1929 2101 7.246171 TGAGGCTAGAGAACTTCTGTTTAAT 57.754 36.000 0.00 0.00 36.61 1.40
2059 2234 4.141459 ACACATGCTCATCTCTCCATTCAT 60.141 41.667 0.00 0.00 0.00 2.57
2086 2261 8.153550 AGAGCAATACTGTAGAAATCCCTATTG 58.846 37.037 0.00 0.00 0.00 1.90
2146 2321 7.205737 TGCTATAGATACAAATGTGGCATTG 57.794 36.000 3.21 0.00 0.00 2.82
2438 2613 7.177392 ACAGCAGCTAATTTCTTATCCTGTTTT 59.823 33.333 0.00 0.00 0.00 2.43
2477 2652 1.669440 GTGGTACCGAGCACCTGAA 59.331 57.895 7.57 0.00 46.34 3.02
2914 3403 8.248253 ACGACCTTGTTTTCTGTATTTCTTTTT 58.752 29.630 0.00 0.00 0.00 1.94
3004 3493 8.034313 TGTCTAGGTTTGATTAATCCAGCTAT 57.966 34.615 17.56 5.87 0.00 2.97
3023 3512 9.761504 CCAGCTATACATATTCTGGAATATCTG 57.238 37.037 11.53 13.06 45.31 2.90
3053 3542 9.935682 CGCTGTATAACATTATGTTCTTCAATT 57.064 29.630 14.29 0.00 40.22 2.32
3236 3725 5.183140 GTCAGTATGGTTGGCATAAAACAGT 59.817 40.000 0.00 0.00 36.16 3.55
3267 3757 9.967451 TGTTTCCAATATAACCTCTGATGTTTA 57.033 29.630 3.69 0.00 0.00 2.01
3344 3834 1.196127 CGGAAAAAGCCTGTACCGTTC 59.804 52.381 0.00 0.00 36.38 3.95
3350 3840 1.740296 GCCTGTACCGTTCACGCAT 60.740 57.895 0.00 0.00 38.18 4.73
3359 3849 1.801771 CCGTTCACGCATAAGTTTCCA 59.198 47.619 0.00 0.00 38.18 3.53
3420 3910 4.766373 TGCTAGCATTTGATCCAAAAGACA 59.234 37.500 14.93 0.00 36.90 3.41
3495 3985 5.835113 TTCCTGTGTTTCTTCTTTCCTTG 57.165 39.130 0.00 0.00 0.00 3.61
3568 4058 9.635520 CTTGCTGATCTTTATTTCAAGAACATT 57.364 29.630 0.00 0.00 35.65 2.71
3571 4061 7.253552 GCTGATCTTTATTTCAAGAACATTGCG 60.254 37.037 0.00 0.00 35.65 4.85
3724 4214 1.584717 GGGAATTCCTTGAGGGGGCT 61.585 60.000 23.63 0.00 35.95 5.19
3814 4317 6.095377 CCTTGTTTAATTCCAGAGACAATGC 58.905 40.000 0.00 0.00 0.00 3.56
3827 4333 6.457934 CCAGAGACAATGCAGTGACATTATTC 60.458 42.308 22.73 7.86 38.19 1.75
3829 4335 6.883217 AGAGACAATGCAGTGACATTATTCTT 59.117 34.615 22.73 0.00 38.19 2.52
3848 4391 6.576662 TTCTTGGTCAGTCTAGTTCTACAG 57.423 41.667 0.00 0.00 0.00 2.74
3849 4392 5.877491 TCTTGGTCAGTCTAGTTCTACAGA 58.123 41.667 0.00 0.00 0.00 3.41
4102 4647 8.131455 TCGATCTAACATTGTTTGCTCTATTC 57.869 34.615 7.45 0.00 0.00 1.75
4299 4848 6.071334 TGGAAGTGTGGTTCTTGACTATCTAG 60.071 42.308 0.00 0.00 0.00 2.43
4556 5105 4.283722 CCTTAACTGTATCTATCGGGCCTT 59.716 45.833 0.84 0.00 0.00 4.35
4568 5117 1.221021 GGGCCTTGTAACTCGAGGG 59.779 63.158 18.41 8.10 45.57 4.30
4604 5153 1.945394 CTTCATCATACAGGTGCTGCC 59.055 52.381 0.00 0.00 34.37 4.85
4607 5156 0.253044 ATCATACAGGTGCTGCCGTT 59.747 50.000 0.00 0.00 43.70 4.44
4733 5282 1.003223 GTTCCAAACGGTGTTCCTTCG 60.003 52.381 0.00 0.00 0.00 3.79
4796 5345 3.515602 ACAGGTGAAGCTGAAAGGATT 57.484 42.857 15.97 0.00 0.00 3.01
4845 5394 8.504005 CAAAGCCATATACCGGAAATAAACTAG 58.496 37.037 9.46 0.00 0.00 2.57
4881 5430 2.746277 GCAACGGGCACTGGTAGG 60.746 66.667 0.00 0.00 43.97 3.18
4910 5459 2.004733 GCAATGCCAGAAAATCCTTGC 58.995 47.619 0.00 0.00 0.00 4.01
4913 5462 1.941377 TGCCAGAAAATCCTTGCCAT 58.059 45.000 0.00 0.00 0.00 4.40
5030 5580 7.331193 GGAGACGATAAAACTGTATGTGAAGTT 59.669 37.037 0.00 0.00 38.25 2.66
5031 5581 8.018677 AGACGATAAAACTGTATGTGAAGTTG 57.981 34.615 0.00 0.00 36.75 3.16
5189 5739 0.321671 ACCTGACTGATGGTGTTCCG 59.678 55.000 0.00 0.00 34.90 4.30
5213 5763 0.756294 TCGTTTCTCCAAGCTGGTGA 59.244 50.000 0.00 0.00 38.17 4.02
5270 5820 7.544566 CACTATCTAATGTTGTAACACGGAGTT 59.455 37.037 0.00 1.20 41.61 3.01
5329 5880 2.495270 AGTCTGTCATCCAGCTGTAGTG 59.505 50.000 13.81 8.34 41.25 2.74
5331 5882 2.493675 TCTGTCATCCAGCTGTAGTGTC 59.506 50.000 13.81 6.73 41.25 3.67
5398 5949 1.668419 CTCGCTATTGAAACCCCAGG 58.332 55.000 0.00 0.00 0.00 4.45
5423 5974 5.896922 TTTTGTGCGGAATTTGTAATGTG 57.103 34.783 0.00 0.00 0.00 3.21
5424 5975 4.837896 TTGTGCGGAATTTGTAATGTGA 57.162 36.364 0.00 0.00 0.00 3.58
5435 5986 9.669353 GGAATTTGTAATGTGATATGCAGTAAG 57.331 33.333 0.00 0.00 0.00 2.34
5449 6000 2.798853 GCAGTAAGTTAGTAGCCCGAGC 60.799 54.545 0.00 0.00 40.32 5.03
5475 6027 1.392510 GGAGTTGCGACGTATGTTTCC 59.607 52.381 0.00 0.00 0.00 3.13
5484 6036 3.670203 GACGTATGTTTCCTGAATTGCG 58.330 45.455 0.00 0.00 0.00 4.85
5485 6037 2.159572 ACGTATGTTTCCTGAATTGCGC 60.160 45.455 0.00 0.00 0.00 6.09
5520 6072 8.062065 ACTGTCCTGTTTTTCAAGAAATTACA 57.938 30.769 0.00 4.06 0.00 2.41
5521 6073 8.695456 ACTGTCCTGTTTTTCAAGAAATTACAT 58.305 29.630 9.80 0.00 30.37 2.29
5526 6078 8.915654 CCTGTTTTTCAAGAAATTACATAGTGC 58.084 33.333 9.80 0.00 30.37 4.40
5527 6079 8.810652 TGTTTTTCAAGAAATTACATAGTGCC 57.189 30.769 0.00 0.00 0.00 5.01
5528 6080 8.637986 TGTTTTTCAAGAAATTACATAGTGCCT 58.362 29.630 0.00 0.00 0.00 4.75
5529 6081 8.915654 GTTTTTCAAGAAATTACATAGTGCCTG 58.084 33.333 0.00 0.00 0.00 4.85
5530 6082 6.757897 TTCAAGAAATTACATAGTGCCTGG 57.242 37.500 0.00 0.00 0.00 4.45
5531 6083 5.815581 TCAAGAAATTACATAGTGCCTGGT 58.184 37.500 0.00 0.00 0.00 4.00
5532 6084 6.245408 TCAAGAAATTACATAGTGCCTGGTT 58.755 36.000 0.00 0.00 0.00 3.67
5533 6085 6.719370 TCAAGAAATTACATAGTGCCTGGTTT 59.281 34.615 0.00 0.00 0.00 3.27
5534 6086 6.515272 AGAAATTACATAGTGCCTGGTTTG 57.485 37.500 0.00 0.00 0.00 2.93
5535 6087 6.010219 AGAAATTACATAGTGCCTGGTTTGT 58.990 36.000 0.00 0.00 0.00 2.83
5536 6088 7.172342 AGAAATTACATAGTGCCTGGTTTGTA 58.828 34.615 0.00 0.00 0.00 2.41
5537 6089 7.336931 AGAAATTACATAGTGCCTGGTTTGTAG 59.663 37.037 0.00 0.00 0.00 2.74
5538 6090 2.711542 ACATAGTGCCTGGTTTGTAGC 58.288 47.619 0.00 0.00 0.00 3.58
5539 6091 2.039746 ACATAGTGCCTGGTTTGTAGCA 59.960 45.455 0.00 0.00 0.00 3.49
5540 6092 3.282021 CATAGTGCCTGGTTTGTAGCAT 58.718 45.455 0.00 0.00 37.60 3.79
5541 6093 1.538047 AGTGCCTGGTTTGTAGCATG 58.462 50.000 0.00 0.00 37.60 4.06
5542 6094 1.202927 AGTGCCTGGTTTGTAGCATGT 60.203 47.619 0.00 0.00 37.60 3.21
5543 6095 1.200020 GTGCCTGGTTTGTAGCATGTC 59.800 52.381 0.00 0.00 37.60 3.06
5544 6096 0.811281 GCCTGGTTTGTAGCATGTCC 59.189 55.000 0.00 0.00 0.00 4.02
5545 6097 1.886222 GCCTGGTTTGTAGCATGTCCA 60.886 52.381 0.00 0.00 0.00 4.02
5546 6098 2.086869 CCTGGTTTGTAGCATGTCCAG 58.913 52.381 0.00 0.00 41.17 3.86
5547 6099 2.553028 CCTGGTTTGTAGCATGTCCAGT 60.553 50.000 0.00 0.00 40.26 4.00
5548 6100 3.307410 CCTGGTTTGTAGCATGTCCAGTA 60.307 47.826 0.00 0.00 40.26 2.74
5549 6101 3.935203 CTGGTTTGTAGCATGTCCAGTAG 59.065 47.826 0.00 0.00 38.01 2.57
5550 6102 3.580895 TGGTTTGTAGCATGTCCAGTAGA 59.419 43.478 0.00 0.00 0.00 2.59
5551 6103 4.041075 TGGTTTGTAGCATGTCCAGTAGAA 59.959 41.667 0.00 0.00 0.00 2.10
5552 6104 4.631813 GGTTTGTAGCATGTCCAGTAGAAG 59.368 45.833 0.00 0.00 0.00 2.85
5553 6105 3.526931 TGTAGCATGTCCAGTAGAAGC 57.473 47.619 0.00 0.00 0.00 3.86
5554 6106 3.099905 TGTAGCATGTCCAGTAGAAGCT 58.900 45.455 0.00 0.00 34.73 3.74
5555 6107 3.515502 TGTAGCATGTCCAGTAGAAGCTT 59.484 43.478 0.00 0.00 33.14 3.74
5556 6108 3.710209 AGCATGTCCAGTAGAAGCTTT 57.290 42.857 0.00 0.00 0.00 3.51
5557 6109 3.604582 AGCATGTCCAGTAGAAGCTTTC 58.395 45.455 0.00 0.00 0.00 2.62
5558 6110 2.680339 GCATGTCCAGTAGAAGCTTTCC 59.320 50.000 0.00 0.00 0.00 3.13
5559 6111 3.620966 GCATGTCCAGTAGAAGCTTTCCT 60.621 47.826 0.00 0.00 0.00 3.36
5560 6112 3.685139 TGTCCAGTAGAAGCTTTCCTG 57.315 47.619 0.00 7.17 0.00 3.86
5561 6113 2.303022 TGTCCAGTAGAAGCTTTCCTGG 59.697 50.000 23.72 23.72 39.23 4.45
5562 6114 2.303311 GTCCAGTAGAAGCTTTCCTGGT 59.697 50.000 26.28 3.64 39.05 4.00
5563 6115 2.979678 TCCAGTAGAAGCTTTCCTGGTT 59.020 45.455 26.28 0.00 39.05 3.67
5564 6116 4.020485 GTCCAGTAGAAGCTTTCCTGGTTA 60.020 45.833 26.28 14.22 39.05 2.85
5565 6117 4.020485 TCCAGTAGAAGCTTTCCTGGTTAC 60.020 45.833 26.28 11.97 39.05 2.50
5566 6118 4.254492 CAGTAGAAGCTTTCCTGGTTACC 58.746 47.826 0.00 0.00 0.00 2.85
5567 6119 2.474410 AGAAGCTTTCCTGGTTACCG 57.526 50.000 0.00 0.00 0.00 4.02
5568 6120 1.975680 AGAAGCTTTCCTGGTTACCGA 59.024 47.619 0.00 0.00 0.00 4.69
5569 6121 2.572104 AGAAGCTTTCCTGGTTACCGAT 59.428 45.455 0.00 0.00 0.00 4.18
5570 6122 2.403252 AGCTTTCCTGGTTACCGATG 57.597 50.000 0.00 0.00 0.00 3.84
5571 6123 0.733150 GCTTTCCTGGTTACCGATGC 59.267 55.000 0.00 0.00 0.00 3.91
5572 6124 1.679032 GCTTTCCTGGTTACCGATGCT 60.679 52.381 0.00 0.00 0.00 3.79
5573 6125 2.711542 CTTTCCTGGTTACCGATGCTT 58.288 47.619 0.00 0.00 0.00 3.91
5574 6126 2.871096 TTCCTGGTTACCGATGCTTT 57.129 45.000 0.00 0.00 0.00 3.51
5575 6127 2.107950 TCCTGGTTACCGATGCTTTG 57.892 50.000 0.00 0.00 0.00 2.77
5576 6128 1.094785 CCTGGTTACCGATGCTTTGG 58.905 55.000 4.29 4.29 0.00 3.28
5577 6129 0.451783 CTGGTTACCGATGCTTTGGC 59.548 55.000 5.77 0.00 39.26 4.52
5578 6130 0.963355 TGGTTACCGATGCTTTGGCC 60.963 55.000 5.77 0.00 37.74 5.36
5579 6131 1.663379 GGTTACCGATGCTTTGGCCC 61.663 60.000 0.00 0.65 37.74 5.80
5580 6132 0.963355 GTTACCGATGCTTTGGCCCA 60.963 55.000 0.00 0.00 37.74 5.36
5581 6133 0.963355 TTACCGATGCTTTGGCCCAC 60.963 55.000 0.00 0.00 37.74 4.61
5582 6134 2.830186 TACCGATGCTTTGGCCCACC 62.830 60.000 0.00 0.00 37.74 4.61
5583 6135 2.361610 CGATGCTTTGGCCCACCT 60.362 61.111 0.00 0.00 37.74 4.00
5584 6136 2.409870 CGATGCTTTGGCCCACCTC 61.410 63.158 0.00 0.00 37.74 3.85
5585 6137 2.037847 ATGCTTTGGCCCACCTCC 59.962 61.111 0.00 0.00 37.74 4.30
5586 6138 2.786512 GATGCTTTGGCCCACCTCCA 62.787 60.000 0.00 0.00 37.74 3.86
5587 6139 2.203625 GCTTTGGCCCACCTCCAA 60.204 61.111 0.00 0.00 41.47 3.53
5590 6142 3.065462 TTTGGCCCACCTCCAAATC 57.935 52.632 0.00 0.00 45.60 2.17
5591 6143 0.544120 TTTGGCCCACCTCCAAATCC 60.544 55.000 0.00 0.00 45.60 3.01
5592 6144 1.734420 TTGGCCCACCTCCAAATCCA 61.734 55.000 0.00 0.00 40.35 3.41
5593 6145 1.311059 GGCCCACCTCCAAATCCAT 59.689 57.895 0.00 0.00 0.00 3.41
5594 6146 0.325577 GGCCCACCTCCAAATCCATT 60.326 55.000 0.00 0.00 0.00 3.16
5595 6147 1.063266 GGCCCACCTCCAAATCCATTA 60.063 52.381 0.00 0.00 0.00 1.90
5596 6148 2.625617 GGCCCACCTCCAAATCCATTAA 60.626 50.000 0.00 0.00 0.00 1.40
5597 6149 3.103742 GCCCACCTCCAAATCCATTAAA 58.896 45.455 0.00 0.00 0.00 1.52
5598 6150 3.118775 GCCCACCTCCAAATCCATTAAAC 60.119 47.826 0.00 0.00 0.00 2.01
5599 6151 4.352893 CCCACCTCCAAATCCATTAAACT 58.647 43.478 0.00 0.00 0.00 2.66
5600 6152 4.160252 CCCACCTCCAAATCCATTAAACTG 59.840 45.833 0.00 0.00 0.00 3.16
5601 6153 4.772100 CCACCTCCAAATCCATTAAACTGT 59.228 41.667 0.00 0.00 0.00 3.55
5602 6154 5.949354 CCACCTCCAAATCCATTAAACTGTA 59.051 40.000 0.00 0.00 0.00 2.74
5603 6155 6.095440 CCACCTCCAAATCCATTAAACTGTAG 59.905 42.308 0.00 0.00 0.00 2.74
5604 6156 5.652452 ACCTCCAAATCCATTAAACTGTAGC 59.348 40.000 0.00 0.00 0.00 3.58
5605 6157 5.220854 CCTCCAAATCCATTAAACTGTAGCG 60.221 44.000 0.00 0.00 0.00 4.26
5606 6158 5.250200 TCCAAATCCATTAAACTGTAGCGT 58.750 37.500 0.00 0.00 0.00 5.07
5607 6159 5.123186 TCCAAATCCATTAAACTGTAGCGTG 59.877 40.000 0.00 0.00 0.00 5.34
5608 6160 4.616181 AATCCATTAAACTGTAGCGTGC 57.384 40.909 0.00 0.00 0.00 5.34
5609 6161 1.996898 TCCATTAAACTGTAGCGTGCG 59.003 47.619 0.00 0.00 0.00 5.34
5610 6162 1.996898 CCATTAAACTGTAGCGTGCGA 59.003 47.619 0.00 0.00 0.00 5.10
5611 6163 2.413796 CCATTAAACTGTAGCGTGCGAA 59.586 45.455 0.00 0.00 0.00 4.70
5612 6164 3.063452 CCATTAAACTGTAGCGTGCGAAT 59.937 43.478 0.00 0.00 0.00 3.34
5613 6165 3.715618 TTAAACTGTAGCGTGCGAATG 57.284 42.857 0.00 0.00 0.00 2.67
5614 6166 0.796312 AAACTGTAGCGTGCGAATGG 59.204 50.000 0.00 0.00 0.00 3.16
5615 6167 1.019278 AACTGTAGCGTGCGAATGGG 61.019 55.000 0.00 0.00 0.00 4.00
5616 6168 1.153647 CTGTAGCGTGCGAATGGGA 60.154 57.895 0.00 0.00 0.00 4.37
5617 6169 0.530650 CTGTAGCGTGCGAATGGGAT 60.531 55.000 0.00 0.00 0.00 3.85
5618 6170 0.809636 TGTAGCGTGCGAATGGGATG 60.810 55.000 0.00 0.00 0.00 3.51
5620 6172 4.256090 GCGTGCGAATGGGATGCC 62.256 66.667 0.00 0.00 42.63 4.40
5621 6173 3.585990 CGTGCGAATGGGATGCCC 61.586 66.667 0.00 0.00 45.71 5.36
5633 6185 2.678471 GGATGCCCCTGTTTTGAATG 57.322 50.000 0.00 0.00 0.00 2.67
5634 6186 1.405933 GGATGCCCCTGTTTTGAATGC 60.406 52.381 0.00 0.00 0.00 3.56
5635 6187 1.275856 GATGCCCCTGTTTTGAATGCA 59.724 47.619 0.00 0.00 0.00 3.96
5636 6188 1.350071 TGCCCCTGTTTTGAATGCAT 58.650 45.000 0.00 0.00 0.00 3.96
5637 6189 1.698532 TGCCCCTGTTTTGAATGCATT 59.301 42.857 12.83 12.83 0.00 3.56
5638 6190 2.289569 TGCCCCTGTTTTGAATGCATTC 60.290 45.455 28.83 28.83 37.31 2.67
5639 6191 2.027837 GCCCCTGTTTTGAATGCATTCT 60.028 45.455 33.23 5.74 37.67 2.40
5640 6192 3.853475 CCCCTGTTTTGAATGCATTCTC 58.147 45.455 33.23 22.14 37.67 2.87
5641 6193 3.512724 CCCCTGTTTTGAATGCATTCTCT 59.487 43.478 33.23 4.53 37.67 3.10
5642 6194 4.020839 CCCCTGTTTTGAATGCATTCTCTT 60.021 41.667 33.23 5.01 37.67 2.85
5643 6195 5.511888 CCCCTGTTTTGAATGCATTCTCTTT 60.512 40.000 33.23 4.22 37.67 2.52
5644 6196 5.993441 CCCTGTTTTGAATGCATTCTCTTTT 59.007 36.000 33.23 3.44 37.67 2.27
5645 6197 6.484308 CCCTGTTTTGAATGCATTCTCTTTTT 59.516 34.615 33.23 2.64 37.67 1.94
5707 6259 9.562408 TTCAAATATTTACTGCATATTACCGGA 57.438 29.630 9.46 0.00 0.00 5.14
5708 6260 9.562408 TCAAATATTTACTGCATATTACCGGAA 57.438 29.630 9.46 0.00 0.00 4.30
5732 6284 7.790823 AAAAATCTGTTTGGGAAAACATGAG 57.209 32.000 0.00 0.00 41.30 2.90
5733 6285 4.525912 ATCTGTTTGGGAAAACATGAGC 57.474 40.909 0.00 0.00 41.30 4.26
5734 6286 3.295093 TCTGTTTGGGAAAACATGAGCA 58.705 40.909 0.00 0.00 41.30 4.26
5735 6287 3.703556 TCTGTTTGGGAAAACATGAGCAA 59.296 39.130 0.00 0.00 41.30 3.91
5736 6288 4.344679 TCTGTTTGGGAAAACATGAGCAAT 59.655 37.500 0.00 0.00 41.30 3.56
5737 6289 4.630111 TGTTTGGGAAAACATGAGCAATC 58.370 39.130 0.00 0.00 37.71 2.67
5738 6290 4.100653 TGTTTGGGAAAACATGAGCAATCA 59.899 37.500 0.00 0.00 37.71 2.57
5739 6291 3.940209 TGGGAAAACATGAGCAATCAC 57.060 42.857 0.00 0.00 0.00 3.06
5740 6292 3.499338 TGGGAAAACATGAGCAATCACT 58.501 40.909 0.00 0.00 0.00 3.41
5741 6293 4.661222 TGGGAAAACATGAGCAATCACTA 58.339 39.130 0.00 0.00 0.00 2.74
5742 6294 5.076182 TGGGAAAACATGAGCAATCACTAA 58.924 37.500 0.00 0.00 0.00 2.24
5743 6295 5.183713 TGGGAAAACATGAGCAATCACTAAG 59.816 40.000 0.00 0.00 0.00 2.18
5744 6296 5.393461 GGGAAAACATGAGCAATCACTAAGG 60.393 44.000 0.00 0.00 0.00 2.69
5745 6297 5.183904 GGAAAACATGAGCAATCACTAAGGT 59.816 40.000 0.00 0.00 0.00 3.50
5746 6298 5.886960 AAACATGAGCAATCACTAAGGTC 57.113 39.130 0.00 0.00 0.00 3.85
5747 6299 4.558226 ACATGAGCAATCACTAAGGTCA 57.442 40.909 0.00 0.00 42.97 4.02
5748 6300 4.256920 ACATGAGCAATCACTAAGGTCAC 58.743 43.478 0.00 0.00 41.81 3.67
5749 6301 4.019860 ACATGAGCAATCACTAAGGTCACT 60.020 41.667 0.00 0.00 41.81 3.41
5750 6302 4.193826 TGAGCAATCACTAAGGTCACTC 57.806 45.455 0.00 0.00 35.15 3.51
5751 6303 3.182967 GAGCAATCACTAAGGTCACTCG 58.817 50.000 0.00 0.00 0.00 4.18
5752 6304 2.093973 AGCAATCACTAAGGTCACTCGG 60.094 50.000 0.00 0.00 0.00 4.63
5753 6305 2.353803 GCAATCACTAAGGTCACTCGGT 60.354 50.000 0.00 0.00 0.00 4.69
5754 6306 3.864921 GCAATCACTAAGGTCACTCGGTT 60.865 47.826 0.00 0.00 0.00 4.44
5755 6307 3.594603 ATCACTAAGGTCACTCGGTTG 57.405 47.619 0.00 0.00 0.00 3.77
5756 6308 2.589720 TCACTAAGGTCACTCGGTTGA 58.410 47.619 0.00 0.00 0.00 3.18
5757 6309 2.960384 TCACTAAGGTCACTCGGTTGAA 59.040 45.455 0.00 0.00 0.00 2.69
5758 6310 3.385433 TCACTAAGGTCACTCGGTTGAAA 59.615 43.478 0.00 0.00 0.00 2.69
5759 6311 3.493503 CACTAAGGTCACTCGGTTGAAAC 59.506 47.826 0.00 0.00 0.00 2.78
5760 6312 3.387050 ACTAAGGTCACTCGGTTGAAACT 59.613 43.478 0.00 0.00 0.00 2.66
5761 6313 2.240493 AGGTCACTCGGTTGAAACTG 57.760 50.000 0.00 0.00 36.62 3.16
5762 6314 0.586802 GGTCACTCGGTTGAAACTGC 59.413 55.000 0.00 0.00 35.25 4.40
5763 6315 1.295792 GTCACTCGGTTGAAACTGCA 58.704 50.000 0.00 0.00 35.25 4.41
5764 6316 1.668751 GTCACTCGGTTGAAACTGCAA 59.331 47.619 0.00 0.00 35.25 4.08
5765 6317 1.668751 TCACTCGGTTGAAACTGCAAC 59.331 47.619 0.00 0.00 45.62 4.17
5774 6326 5.776519 GTTGAAACTGCAACAAATTGTCA 57.223 34.783 0.00 0.00 45.65 3.58
5775 6327 6.348621 GTTGAAACTGCAACAAATTGTCAT 57.651 33.333 0.00 0.00 45.65 3.06
5776 6328 5.970140 TGAAACTGCAACAAATTGTCATG 57.030 34.783 0.00 0.00 38.17 3.07
5777 6329 4.270566 TGAAACTGCAACAAATTGTCATGC 59.729 37.500 14.00 14.00 38.17 4.06
5778 6330 3.455990 ACTGCAACAAATTGTCATGCA 57.544 38.095 20.15 20.15 40.53 3.96
5779 6331 3.997762 ACTGCAACAAATTGTCATGCAT 58.002 36.364 21.21 11.68 41.51 3.96
5780 6332 3.743911 ACTGCAACAAATTGTCATGCATG 59.256 39.130 21.21 21.07 41.51 4.06
5781 6333 3.729966 TGCAACAAATTGTCATGCATGT 58.270 36.364 25.43 4.01 38.67 3.21
5782 6334 3.495001 TGCAACAAATTGTCATGCATGTG 59.505 39.130 25.43 17.26 38.67 3.21
5783 6335 3.495377 GCAACAAATTGTCATGCATGTGT 59.505 39.130 25.43 17.89 35.00 3.72
5784 6336 4.685165 GCAACAAATTGTCATGCATGTGTA 59.315 37.500 25.43 12.34 35.00 2.90
5785 6337 5.164031 GCAACAAATTGTCATGCATGTGTAG 60.164 40.000 25.43 12.61 35.00 2.74
5786 6338 5.063180 ACAAATTGTCATGCATGTGTAGG 57.937 39.130 25.43 12.78 0.00 3.18
5787 6339 4.766373 ACAAATTGTCATGCATGTGTAGGA 59.234 37.500 25.43 2.81 0.00 2.94
5788 6340 5.419788 ACAAATTGTCATGCATGTGTAGGAT 59.580 36.000 25.43 9.97 0.00 3.24
5789 6341 5.509716 AATTGTCATGCATGTGTAGGATG 57.490 39.130 25.43 0.00 36.31 3.51
5790 6342 2.921821 TGTCATGCATGTGTAGGATGG 58.078 47.619 25.43 0.00 35.77 3.51
5791 6343 2.224606 GTCATGCATGTGTAGGATGGG 58.775 52.381 25.43 0.00 35.77 4.00
5792 6344 2.126057 TCATGCATGTGTAGGATGGGA 58.874 47.619 25.43 0.00 35.77 4.37
5793 6345 2.105306 TCATGCATGTGTAGGATGGGAG 59.895 50.000 25.43 0.00 35.77 4.30
5794 6346 0.181114 TGCATGTGTAGGATGGGAGC 59.819 55.000 0.00 0.00 0.00 4.70
5795 6347 0.181114 GCATGTGTAGGATGGGAGCA 59.819 55.000 0.00 0.00 0.00 4.26
5796 6348 1.408683 GCATGTGTAGGATGGGAGCAA 60.409 52.381 0.00 0.00 0.00 3.91
5797 6349 2.945440 GCATGTGTAGGATGGGAGCAAA 60.945 50.000 0.00 0.00 0.00 3.68
5798 6350 2.489938 TGTGTAGGATGGGAGCAAAC 57.510 50.000 0.00 0.00 0.00 2.93
5799 6351 1.985159 TGTGTAGGATGGGAGCAAACT 59.015 47.619 0.00 0.00 0.00 2.66
5800 6352 2.375174 TGTGTAGGATGGGAGCAAACTT 59.625 45.455 0.00 0.00 0.00 2.66
5801 6353 3.181434 TGTGTAGGATGGGAGCAAACTTT 60.181 43.478 0.00 0.00 0.00 2.66
5802 6354 3.826729 GTGTAGGATGGGAGCAAACTTTT 59.173 43.478 0.00 0.00 0.00 2.27
5803 6355 5.007682 GTGTAGGATGGGAGCAAACTTTTA 58.992 41.667 0.00 0.00 0.00 1.52
5804 6356 5.007682 TGTAGGATGGGAGCAAACTTTTAC 58.992 41.667 0.00 0.00 0.00 2.01
5805 6357 3.431415 AGGATGGGAGCAAACTTTTACC 58.569 45.455 0.00 0.00 0.00 2.85
5806 6358 3.161866 GGATGGGAGCAAACTTTTACCA 58.838 45.455 0.00 0.00 0.00 3.25
5807 6359 3.576550 GGATGGGAGCAAACTTTTACCAA 59.423 43.478 0.00 0.00 0.00 3.67
5808 6360 4.039852 GGATGGGAGCAAACTTTTACCAAA 59.960 41.667 0.00 0.00 0.00 3.28
5809 6361 5.454045 GGATGGGAGCAAACTTTTACCAAAA 60.454 40.000 0.00 0.00 0.00 2.44
5810 6362 5.422214 TGGGAGCAAACTTTTACCAAAAA 57.578 34.783 0.00 0.00 33.58 1.94
5811 6363 5.179533 TGGGAGCAAACTTTTACCAAAAAC 58.820 37.500 0.00 0.00 31.37 2.43
5812 6364 5.179533 GGGAGCAAACTTTTACCAAAAACA 58.820 37.500 0.00 0.00 31.37 2.83
5813 6365 5.064198 GGGAGCAAACTTTTACCAAAAACAC 59.936 40.000 0.00 0.00 31.37 3.32
5814 6366 5.872617 GGAGCAAACTTTTACCAAAAACACT 59.127 36.000 0.00 0.00 31.37 3.55
5815 6367 6.370442 GGAGCAAACTTTTACCAAAAACACTT 59.630 34.615 0.00 0.00 31.37 3.16
5816 6368 7.127917 AGCAAACTTTTACCAAAAACACTTG 57.872 32.000 0.00 0.00 31.37 3.16
5817 6369 5.792962 GCAAACTTTTACCAAAAACACTTGC 59.207 36.000 0.00 0.00 34.53 4.01
5818 6370 6.566753 GCAAACTTTTACCAAAAACACTTGCA 60.567 34.615 0.00 0.00 37.74 4.08
5819 6371 7.525759 CAAACTTTTACCAAAAACACTTGCAT 58.474 30.769 0.00 0.00 31.37 3.96
5820 6372 8.660373 CAAACTTTTACCAAAAACACTTGCATA 58.340 29.630 0.00 0.00 31.37 3.14
5821 6373 8.779354 AACTTTTACCAAAAACACTTGCATAA 57.221 26.923 0.00 0.00 31.37 1.90
5822 6374 8.192068 ACTTTTACCAAAAACACTTGCATAAC 57.808 30.769 0.00 0.00 31.37 1.89
5823 6375 7.819900 ACTTTTACCAAAAACACTTGCATAACA 59.180 29.630 0.00 0.00 31.37 2.41
5824 6376 8.547967 TTTTACCAAAAACACTTGCATAACAA 57.452 26.923 0.00 0.00 31.51 2.83
5825 6377 8.547967 TTTACCAAAAACACTTGCATAACAAA 57.452 26.923 0.00 0.00 37.96 2.83
5826 6378 8.547967 TTACCAAAAACACTTGCATAACAAAA 57.452 26.923 0.00 0.00 37.96 2.44
5827 6379 7.440523 ACCAAAAACACTTGCATAACAAAAA 57.559 28.000 0.00 0.00 37.96 1.94
5828 6380 7.301789 ACCAAAAACACTTGCATAACAAAAAC 58.698 30.769 0.00 0.00 37.96 2.43
5829 6381 7.041098 ACCAAAAACACTTGCATAACAAAAACA 60.041 29.630 0.00 0.00 37.96 2.83
5830 6382 7.270151 CCAAAAACACTTGCATAACAAAAACAC 59.730 33.333 0.00 0.00 37.96 3.32
5831 6383 7.426929 AAAACACTTGCATAACAAAAACACA 57.573 28.000 0.00 0.00 37.96 3.72
5832 6384 7.426929 AAACACTTGCATAACAAAAACACAA 57.573 28.000 0.00 0.00 37.96 3.33
5833 6385 7.608308 AACACTTGCATAACAAAAACACAAT 57.392 28.000 0.00 0.00 37.96 2.71
5834 6386 7.002816 ACACTTGCATAACAAAAACACAATG 57.997 32.000 0.00 0.00 37.96 2.82
5835 6387 6.593382 ACACTTGCATAACAAAAACACAATGT 59.407 30.769 0.00 0.00 37.96 2.71
5836 6388 7.118971 ACACTTGCATAACAAAAACACAATGTT 59.881 29.630 0.00 0.00 37.96 2.71
5851 6403 8.635765 AACACAATGTTTGAAGTAGATACCAT 57.364 30.769 0.00 0.00 37.26 3.55
5852 6404 8.635765 ACACAATGTTTGAAGTAGATACCATT 57.364 30.769 0.00 0.00 0.00 3.16
5853 6405 8.514594 ACACAATGTTTGAAGTAGATACCATTG 58.485 33.333 0.00 0.00 42.07 2.82
5854 6406 8.729756 CACAATGTTTGAAGTAGATACCATTGA 58.270 33.333 17.02 0.00 39.97 2.57
5855 6407 8.950210 ACAATGTTTGAAGTAGATACCATTGAG 58.050 33.333 17.02 1.74 39.97 3.02
5856 6408 8.950210 CAATGTTTGAAGTAGATACCATTGAGT 58.050 33.333 0.00 0.00 39.97 3.41
5857 6409 8.723942 ATGTTTGAAGTAGATACCATTGAGTC 57.276 34.615 0.00 0.00 0.00 3.36
5858 6410 7.676004 TGTTTGAAGTAGATACCATTGAGTCA 58.324 34.615 0.00 0.00 0.00 3.41
5859 6411 8.321353 TGTTTGAAGTAGATACCATTGAGTCAT 58.679 33.333 0.00 0.00 0.00 3.06
5860 6412 9.167311 GTTTGAAGTAGATACCATTGAGTCATT 57.833 33.333 0.00 0.00 0.00 2.57
5861 6413 8.722480 TTGAAGTAGATACCATTGAGTCATTG 57.278 34.615 7.86 7.86 0.00 2.82
5862 6414 6.763135 TGAAGTAGATACCATTGAGTCATTGC 59.237 38.462 9.13 0.00 0.00 3.56
5863 6415 6.239217 AGTAGATACCATTGAGTCATTGCA 57.761 37.500 9.13 0.00 0.00 4.08
5864 6416 6.653020 AGTAGATACCATTGAGTCATTGCAA 58.347 36.000 0.00 0.00 0.00 4.08
5865 6417 5.824904 AGATACCATTGAGTCATTGCAAC 57.175 39.130 0.00 0.00 0.00 4.17
5866 6418 5.255687 AGATACCATTGAGTCATTGCAACA 58.744 37.500 0.00 0.00 0.00 3.33
5867 6419 3.648339 ACCATTGAGTCATTGCAACAC 57.352 42.857 0.00 1.08 0.00 3.32
5868 6420 2.030893 ACCATTGAGTCATTGCAACACG 60.031 45.455 0.00 0.00 0.00 4.49
5869 6421 2.030893 CCATTGAGTCATTGCAACACGT 60.031 45.455 0.00 0.00 0.00 4.49
5870 6422 3.228749 CATTGAGTCATTGCAACACGTC 58.771 45.455 0.00 0.00 0.00 4.34
5871 6423 2.238942 TGAGTCATTGCAACACGTCT 57.761 45.000 0.00 0.00 0.00 4.18
5872 6424 2.135139 TGAGTCATTGCAACACGTCTC 58.865 47.619 0.00 6.94 0.00 3.36
5873 6425 2.135139 GAGTCATTGCAACACGTCTCA 58.865 47.619 0.00 0.00 0.00 3.27
5874 6426 1.867233 AGTCATTGCAACACGTCTCAC 59.133 47.619 0.00 0.00 0.00 3.51
5875 6427 1.597195 GTCATTGCAACACGTCTCACA 59.403 47.619 0.00 0.00 0.00 3.58
5876 6428 1.597195 TCATTGCAACACGTCTCACAC 59.403 47.619 0.00 0.00 0.00 3.82
5877 6429 0.944386 ATTGCAACACGTCTCACACC 59.056 50.000 0.00 0.00 0.00 4.16
5878 6430 1.092921 TTGCAACACGTCTCACACCC 61.093 55.000 0.00 0.00 0.00 4.61
5879 6431 2.594962 GCAACACGTCTCACACCCG 61.595 63.158 0.00 0.00 0.00 5.28
5880 6432 1.066752 CAACACGTCTCACACCCGA 59.933 57.895 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 96 1.743321 CTCACGGCAGATCTCTCCCC 61.743 65.000 0.00 0.00 0.00 4.81
177 188 4.514577 CCCGCACGGCACTAGAGG 62.515 72.222 2.83 0.00 0.00 3.69
184 195 4.077184 CTAACTCCCCGCACGGCA 62.077 66.667 2.83 0.00 0.00 5.69
189 200 1.956629 GCTGCTACTAACTCCCCGCA 61.957 60.000 0.00 0.00 0.00 5.69
192 203 1.139256 GAAGGCTGCTACTAACTCCCC 59.861 57.143 0.00 0.00 0.00 4.81
199 210 6.115448 AGAAAAGAAAGAAGGCTGCTACTA 57.885 37.500 0.00 0.00 0.00 1.82
200 211 4.979335 AGAAAAGAAAGAAGGCTGCTACT 58.021 39.130 0.00 0.00 0.00 2.57
201 212 5.456265 CAAGAAAAGAAAGAAGGCTGCTAC 58.544 41.667 0.00 0.00 0.00 3.58
297 310 4.143333 CTACCACCAGGACCGCGG 62.143 72.222 26.86 26.86 38.69 6.46
301 314 1.299976 CAAGCCTACCACCAGGACC 59.700 63.158 0.00 0.00 38.00 4.46
304 317 0.322546 GGAACAAGCCTACCACCAGG 60.323 60.000 0.00 0.00 42.21 4.45
328 346 0.108520 TCTAGCCGCCAGGTTTTACG 60.109 55.000 0.00 0.00 40.50 3.18
371 389 2.607187 CCACGAATCTGTAAAGCGACT 58.393 47.619 0.00 0.00 0.00 4.18
374 392 0.373716 GCCCACGAATCTGTAAAGCG 59.626 55.000 0.00 0.00 0.00 4.68
389 407 2.344981 TACGAGCAGCTTACGCCCA 61.345 57.895 0.00 0.00 36.60 5.36
391 409 2.222217 CGTACGAGCAGCTTACGCC 61.222 63.158 10.44 0.03 37.80 5.68
398 416 0.110823 CACCAAAACGTACGAGCAGC 60.111 55.000 24.41 0.00 0.00 5.25
399 417 0.511221 CCACCAAAACGTACGAGCAG 59.489 55.000 24.41 8.80 0.00 4.24
400 418 0.104487 TCCACCAAAACGTACGAGCA 59.896 50.000 24.41 0.00 0.00 4.26
402 420 3.125316 TCTTTCCACCAAAACGTACGAG 58.875 45.455 24.41 8.44 0.00 4.18
404 422 3.948196 TTCTTTCCACCAAAACGTACG 57.052 42.857 15.01 15.01 0.00 3.67
428 452 2.203153 AAACCAAGCAGCCGACGT 60.203 55.556 0.00 0.00 0.00 4.34
438 462 2.030540 TGACGAGACCTACGAAACCAAG 60.031 50.000 0.00 0.00 34.70 3.61
446 473 1.397692 GAGGAACTGACGAGACCTACG 59.602 57.143 0.00 0.00 41.55 3.51
455 482 6.537566 CATGAATTTACAAGAGGAACTGACG 58.462 40.000 0.00 0.00 41.55 4.35
476 503 2.848858 GCCATTACTGCCGGGCATG 61.849 63.158 24.10 17.42 45.70 4.06
481 513 2.108157 TAGCGCCATTACTGCCGG 59.892 61.111 2.29 0.00 0.00 6.13
537 600 4.210120 CAGCACAACTACTCAAGTCAAGTC 59.790 45.833 0.00 0.00 37.50 3.01
575 655 1.513158 CGCACAGAGAGGTGGGTAG 59.487 63.158 0.00 0.00 44.11 3.18
682 762 2.258755 CACGTGATGCAACGATGTCTA 58.741 47.619 17.30 0.00 46.49 2.59
684 764 0.095245 CCACGTGATGCAACGATGTC 59.905 55.000 19.30 0.00 46.49 3.06
686 766 0.516877 AACCACGTGATGCAACGATG 59.483 50.000 19.30 11.02 46.49 3.84
688 768 0.249699 AGAACCACGTGATGCAACGA 60.250 50.000 19.30 0.00 46.49 3.85
690 770 2.157668 CACTAGAACCACGTGATGCAAC 59.842 50.000 19.30 2.24 0.00 4.17
773 858 4.398549 TTCATACAACGCAAACTAGCAC 57.601 40.909 0.00 0.00 0.00 4.40
834 919 8.095937 ACAAAAAGACACTAGCCAAGTATTAC 57.904 34.615 0.00 0.00 35.76 1.89
840 925 6.560253 ATGTACAAAAAGACACTAGCCAAG 57.440 37.500 0.00 0.00 0.00 3.61
961 1046 5.233476 TCACACAAAACAGAATACGAGTCAC 59.767 40.000 0.00 0.00 0.00 3.67
980 1065 4.083643 CCATTTGAGATGTCTGTGTCACAC 60.084 45.833 0.00 0.00 34.56 3.82
1044 1129 4.967871 TCCCTTTCCCTATAACCTCTTCA 58.032 43.478 0.00 0.00 0.00 3.02
1059 1144 1.339727 ACCACGCCATAACTCCCTTTC 60.340 52.381 0.00 0.00 0.00 2.62
1224 1309 6.095860 TCGACGGAGGAAGAAGAATATGTTTA 59.904 38.462 0.00 0.00 0.00 2.01
1341 1426 9.846248 AACTGATACAAGAAAAACTGATAATGC 57.154 29.630 0.00 0.00 0.00 3.56
1441 1526 1.561076 TGCCTGATATCCAGCTGTTGT 59.439 47.619 13.81 0.00 41.57 3.32
1499 1599 7.770801 TTGTTATCTACTGACATGTGTATGC 57.229 36.000 1.15 0.00 37.85 3.14
1500 1600 8.278408 GCATTGTTATCTACTGACATGTGTATG 58.722 37.037 1.15 0.00 40.24 2.39
1544 1644 6.570672 TCGTCGCCAGATACTAGAAATATT 57.429 37.500 0.00 0.00 0.00 1.28
1577 1677 5.923733 AGGTTTTCACAAATACCAACACA 57.076 34.783 0.00 0.00 33.02 3.72
1637 1737 4.899352 ATACAGGTCCATATTGCTCTCC 57.101 45.455 0.00 0.00 0.00 3.71
1657 1757 7.178628 ACTGTGTGACCTGTATCAAAGTACTAT 59.821 37.037 0.00 0.00 0.00 2.12
1662 1762 4.689612 ACTGTGTGACCTGTATCAAAGT 57.310 40.909 0.00 0.00 0.00 2.66
1745 1904 8.154203 TGATTAACAGTAACTTTCCATCACAGA 58.846 33.333 0.00 0.00 0.00 3.41
1869 2041 9.368416 TCACAAGATTAGTATGCCTATCTAGTT 57.632 33.333 0.00 0.00 0.00 2.24
2038 2212 4.708576 ATGAATGGAGAGATGAGCATGT 57.291 40.909 0.00 0.00 0.00 3.21
2059 2234 8.958060 ATAGGGATTTCTACAGTATTGCTCTA 57.042 34.615 0.00 0.00 0.00 2.43
2362 2537 2.441750 GTCAGCATGGTAGGGGGAAATA 59.558 50.000 0.00 0.00 36.16 1.40
2438 2613 5.995282 CCACCTTGTTGCGATATAATCCTAA 59.005 40.000 0.00 0.00 0.00 2.69
2591 2766 4.220602 CAGCACCCTTAAAGCCTTAAACAT 59.779 41.667 0.00 0.00 0.00 2.71
2848 3337 7.229306 TGAAGCAATATGATTACCCTGAACATC 59.771 37.037 0.00 0.00 0.00 3.06
2914 3403 3.505680 ACAGCTTAATCATTCGGTTTGCA 59.494 39.130 0.00 0.00 0.00 4.08
3004 3493 7.039011 AGCGTTCCAGATATTCCAGAATATGTA 60.039 37.037 15.82 0.00 42.32 2.29
3023 3512 7.478520 AGAACATAATGTTATACAGCGTTCC 57.521 36.000 0.00 0.00 41.28 3.62
3026 3515 8.487313 TTGAAGAACATAATGTTATACAGCGT 57.513 30.769 0.00 0.00 41.28 5.07
3053 3542 1.134250 TGCTGGTGTGTACTGCAAGAA 60.134 47.619 0.00 0.00 37.43 2.52
3252 3741 8.958060 AGGATAGCTATAAACATCAGAGGTTA 57.042 34.615 6.13 0.00 0.00 2.85
3267 3757 8.354711 TCATTTCGAATCTGTAGGATAGCTAT 57.645 34.615 5.76 5.76 33.71 2.97
3344 3834 3.573598 TGCATTTGGAAACTTATGCGTG 58.426 40.909 0.00 0.00 45.00 5.34
3350 3840 5.324409 AGTGGATCTGCATTTGGAAACTTA 58.676 37.500 0.00 0.00 0.00 2.24
3420 3910 1.377994 CCTCTTCAGCACTTGGCCT 59.622 57.895 3.32 0.00 46.50 5.19
3495 3985 9.338622 ACATTAGCTAATGGTATTCAAGGTTAC 57.661 33.333 37.23 0.00 45.54 2.50
3568 4058 1.676678 GCTCCCTATCCACACTCGCA 61.677 60.000 0.00 0.00 0.00 5.10
3571 4061 1.414550 GAAGGCTCCCTATCCACACTC 59.585 57.143 0.00 0.00 31.13 3.51
3724 4214 4.947388 GGGTACATGAAATTAGTTGGCTCA 59.053 41.667 0.00 0.00 0.00 4.26
3814 4317 6.169094 AGACTGACCAAGAATAATGTCACTG 58.831 40.000 0.00 0.00 34.30 3.66
3827 4333 6.767524 ATCTGTAGAACTAGACTGACCAAG 57.232 41.667 0.00 0.00 0.00 3.61
3829 4335 7.540474 AAAATCTGTAGAACTAGACTGACCA 57.460 36.000 0.00 0.00 0.00 4.02
3856 4399 5.589855 CCTGCACAGACATTAATGATACCAA 59.410 40.000 22.16 1.61 0.00 3.67
3857 4400 5.125356 CCTGCACAGACATTAATGATACCA 58.875 41.667 22.16 9.49 0.00 3.25
3858 4401 5.126067 ACCTGCACAGACATTAATGATACC 58.874 41.667 22.16 7.88 0.00 2.73
3865 4408 4.650734 TCATGAACCTGCACAGACATTAA 58.349 39.130 0.00 0.00 0.00 1.40
4102 4647 3.785486 TGATCTACTGCACTGAAATCCG 58.215 45.455 0.00 0.00 0.00 4.18
4299 4848 2.876550 ACTCGGCCTGTTAACAGAAAAC 59.123 45.455 32.50 19.27 46.59 2.43
4348 4897 1.204704 CTGTGGTCGGCTATCTGAACA 59.795 52.381 0.00 0.00 42.73 3.18
4556 5105 5.711506 TGTATCAAGTTACCCTCGAGTTACA 59.288 40.000 12.31 0.00 0.00 2.41
4567 5116 6.170506 TGATGAAGTGGTGTATCAAGTTACC 58.829 40.000 0.00 0.00 0.00 2.85
4568 5117 7.849804 ATGATGAAGTGGTGTATCAAGTTAC 57.150 36.000 0.00 0.00 33.71 2.50
4604 5153 0.240945 CTTTACCAGGCCTTGCAACG 59.759 55.000 0.00 0.00 0.00 4.10
4607 5156 0.539438 CCACTTTACCAGGCCTTGCA 60.539 55.000 0.00 0.00 0.00 4.08
4695 5244 3.552890 GGAACAATTCCTTGGCTTGTGAC 60.553 47.826 0.10 6.24 46.57 3.67
4796 5345 2.031012 CCAGCTTGGCTCACGTCA 59.969 61.111 0.00 0.00 36.40 4.35
4845 5394 4.120331 GCCATCCACGGTTGCAGC 62.120 66.667 0.00 0.00 0.00 5.25
4910 5459 2.834638 AACCCTTCCTGATCCAATGG 57.165 50.000 0.00 0.00 0.00 3.16
4913 5462 3.526899 TGAGTAACCCTTCCTGATCCAA 58.473 45.455 0.00 0.00 0.00 3.53
4990 5540 1.183549 GTCTCCGGGAGAAGTAAGCA 58.816 55.000 27.60 0.69 40.59 3.91
4997 5547 3.094572 AGTTTTATCGTCTCCGGGAGAA 58.905 45.455 27.60 14.36 40.59 2.87
5024 5574 2.844451 GCCTGCCGCAACAACTTCA 61.844 57.895 0.00 0.00 37.47 3.02
5030 5580 2.047274 GACTAGCCTGCCGCAACA 60.047 61.111 0.00 0.00 41.38 3.33
5031 5581 1.811679 GAGACTAGCCTGCCGCAAC 60.812 63.158 0.00 0.00 41.38 4.17
5142 5692 1.302112 TCCTTTGTCGCGAATGCCA 60.302 52.632 12.06 0.41 38.08 4.92
5189 5739 2.589014 CAGCTTGGAGAAACGAATTGC 58.411 47.619 0.00 0.00 0.00 3.56
5329 5880 6.648725 AATAGCAGTGTTCAATAGTTCGAC 57.351 37.500 0.00 0.00 0.00 4.20
5331 5882 7.063426 TCAGAAATAGCAGTGTTCAATAGTTCG 59.937 37.037 0.00 0.00 0.00 3.95
5422 5973 5.278808 CGGGCTACTAACTTACTGCATATCA 60.279 44.000 0.00 0.00 0.00 2.15
5423 5974 5.048224 TCGGGCTACTAACTTACTGCATATC 60.048 44.000 0.00 0.00 0.00 1.63
5424 5975 4.831155 TCGGGCTACTAACTTACTGCATAT 59.169 41.667 0.00 0.00 0.00 1.78
5435 5986 1.392510 CGTTTTGCTCGGGCTACTAAC 59.607 52.381 9.62 2.17 39.59 2.34
5449 6000 0.854062 TACGTCGCAACTCCGTTTTG 59.146 50.000 0.00 0.00 36.12 2.44
5475 6027 4.088923 CAGTAAACATGTTGCGCAATTCAG 59.911 41.667 27.79 18.11 0.00 3.02
5484 6036 4.568152 AACAGGACAGTAAACATGTTGC 57.432 40.909 12.82 8.51 39.05 4.17
5485 6037 7.032580 TGAAAAACAGGACAGTAAACATGTTG 58.967 34.615 12.82 2.41 39.46 3.33
5519 6071 2.710377 TGCTACAAACCAGGCACTATG 58.290 47.619 0.00 0.00 36.02 2.23
5520 6072 3.282021 CATGCTACAAACCAGGCACTAT 58.718 45.455 0.00 0.00 36.02 2.12
5521 6073 2.039746 ACATGCTACAAACCAGGCACTA 59.960 45.455 0.00 0.00 36.02 2.74
5522 6074 1.202927 ACATGCTACAAACCAGGCACT 60.203 47.619 0.00 0.00 43.88 4.40
5523 6075 1.200020 GACATGCTACAAACCAGGCAC 59.800 52.381 0.00 0.00 37.52 5.01
5524 6076 1.533625 GACATGCTACAAACCAGGCA 58.466 50.000 0.00 0.00 39.06 4.75
5525 6077 0.811281 GGACATGCTACAAACCAGGC 59.189 55.000 0.00 0.00 0.00 4.85
5526 6078 2.086869 CTGGACATGCTACAAACCAGG 58.913 52.381 0.00 0.00 40.50 4.45
5527 6079 2.783135 ACTGGACATGCTACAAACCAG 58.217 47.619 0.00 0.00 46.78 4.00
5528 6080 2.949177 ACTGGACATGCTACAAACCA 57.051 45.000 0.00 0.00 0.00 3.67
5529 6081 4.202245 TCTACTGGACATGCTACAAACC 57.798 45.455 0.00 0.00 0.00 3.27
5530 6082 4.093556 GCTTCTACTGGACATGCTACAAAC 59.906 45.833 0.00 0.00 0.00 2.93
5531 6083 4.020218 AGCTTCTACTGGACATGCTACAAA 60.020 41.667 0.00 0.00 0.00 2.83
5532 6084 3.515502 AGCTTCTACTGGACATGCTACAA 59.484 43.478 0.00 0.00 0.00 2.41
5533 6085 3.099905 AGCTTCTACTGGACATGCTACA 58.900 45.455 0.00 0.00 0.00 2.74
5534 6086 3.810310 AGCTTCTACTGGACATGCTAC 57.190 47.619 0.00 0.00 0.00 3.58
5535 6087 4.383118 GGAAAGCTTCTACTGGACATGCTA 60.383 45.833 0.00 0.00 0.00 3.49
5536 6088 3.604582 GAAAGCTTCTACTGGACATGCT 58.395 45.455 0.00 0.00 0.00 3.79
5537 6089 2.680339 GGAAAGCTTCTACTGGACATGC 59.320 50.000 0.00 0.00 0.00 4.06
5538 6090 3.937706 CAGGAAAGCTTCTACTGGACATG 59.062 47.826 0.00 0.00 0.00 3.21
5539 6091 4.213564 CAGGAAAGCTTCTACTGGACAT 57.786 45.455 0.00 0.00 0.00 3.06
5540 6092 3.685139 CAGGAAAGCTTCTACTGGACA 57.315 47.619 0.00 0.00 0.00 4.02
5544 6096 4.254492 GGTAACCAGGAAAGCTTCTACTG 58.746 47.826 14.60 14.60 0.00 2.74
5545 6097 3.056035 CGGTAACCAGGAAAGCTTCTACT 60.056 47.826 0.00 0.00 0.00 2.57
5546 6098 3.056322 TCGGTAACCAGGAAAGCTTCTAC 60.056 47.826 0.00 0.00 0.00 2.59
5547 6099 3.167485 TCGGTAACCAGGAAAGCTTCTA 58.833 45.455 0.00 0.00 0.00 2.10
5548 6100 1.975680 TCGGTAACCAGGAAAGCTTCT 59.024 47.619 0.00 0.00 0.00 2.85
5549 6101 2.467566 TCGGTAACCAGGAAAGCTTC 57.532 50.000 0.00 0.00 0.00 3.86
5550 6102 2.711542 CATCGGTAACCAGGAAAGCTT 58.288 47.619 0.00 0.00 0.00 3.74
5551 6103 1.679032 GCATCGGTAACCAGGAAAGCT 60.679 52.381 0.00 0.00 0.00 3.74
5552 6104 0.733150 GCATCGGTAACCAGGAAAGC 59.267 55.000 0.00 0.00 0.00 3.51
5553 6105 2.403252 AGCATCGGTAACCAGGAAAG 57.597 50.000 0.00 0.00 0.00 2.62
5554 6106 2.817258 CAAAGCATCGGTAACCAGGAAA 59.183 45.455 0.00 0.00 0.00 3.13
5555 6107 2.432444 CAAAGCATCGGTAACCAGGAA 58.568 47.619 0.00 0.00 0.00 3.36
5556 6108 1.339631 CCAAAGCATCGGTAACCAGGA 60.340 52.381 0.00 0.00 0.00 3.86
5557 6109 1.094785 CCAAAGCATCGGTAACCAGG 58.905 55.000 0.00 0.00 0.00 4.45
5558 6110 0.451783 GCCAAAGCATCGGTAACCAG 59.548 55.000 0.00 0.00 39.53 4.00
5559 6111 0.963355 GGCCAAAGCATCGGTAACCA 60.963 55.000 0.00 0.00 42.56 3.67
5560 6112 1.663379 GGGCCAAAGCATCGGTAACC 61.663 60.000 4.39 0.00 42.56 2.85
5561 6113 0.963355 TGGGCCAAAGCATCGGTAAC 60.963 55.000 2.13 0.00 42.56 2.50
5562 6114 0.963355 GTGGGCCAAAGCATCGGTAA 60.963 55.000 8.40 0.00 42.56 2.85
5563 6115 1.377987 GTGGGCCAAAGCATCGGTA 60.378 57.895 8.40 0.00 42.56 4.02
5564 6116 2.676471 GTGGGCCAAAGCATCGGT 60.676 61.111 8.40 0.00 42.56 4.69
5565 6117 3.451894 GGTGGGCCAAAGCATCGG 61.452 66.667 8.40 0.00 42.56 4.18
5566 6118 2.361610 AGGTGGGCCAAAGCATCG 60.362 61.111 8.40 0.00 42.56 3.84
5567 6119 2.054453 GGAGGTGGGCCAAAGCATC 61.054 63.158 8.40 2.71 42.56 3.91
5568 6120 2.037847 GGAGGTGGGCCAAAGCAT 59.962 61.111 8.40 0.00 42.56 3.79
5569 6121 3.080158 TTGGAGGTGGGCCAAAGCA 62.080 57.895 8.40 0.00 42.13 3.91
5570 6122 2.203625 TTGGAGGTGGGCCAAAGC 60.204 61.111 8.40 1.04 42.13 3.51
5573 6125 1.078347 GGATTTGGAGGTGGGCCAA 59.922 57.895 8.40 0.00 43.31 4.52
5574 6126 1.517538 ATGGATTTGGAGGTGGGCCA 61.518 55.000 0.00 0.00 37.19 5.36
5575 6127 0.325577 AATGGATTTGGAGGTGGGCC 60.326 55.000 0.00 0.00 0.00 5.80
5576 6128 2.452600 TAATGGATTTGGAGGTGGGC 57.547 50.000 0.00 0.00 0.00 5.36
5577 6129 4.160252 CAGTTTAATGGATTTGGAGGTGGG 59.840 45.833 0.00 0.00 0.00 4.61
5578 6130 4.772100 ACAGTTTAATGGATTTGGAGGTGG 59.228 41.667 0.00 0.00 0.00 4.61
5579 6131 5.982890 ACAGTTTAATGGATTTGGAGGTG 57.017 39.130 0.00 0.00 0.00 4.00
5580 6132 5.652452 GCTACAGTTTAATGGATTTGGAGGT 59.348 40.000 0.00 0.00 0.00 3.85
5581 6133 5.220854 CGCTACAGTTTAATGGATTTGGAGG 60.221 44.000 0.00 0.00 0.00 4.30
5582 6134 5.354234 ACGCTACAGTTTAATGGATTTGGAG 59.646 40.000 0.00 0.00 0.00 3.86
5583 6135 5.123186 CACGCTACAGTTTAATGGATTTGGA 59.877 40.000 0.00 0.00 0.00 3.53
5584 6136 5.331902 CACGCTACAGTTTAATGGATTTGG 58.668 41.667 0.00 0.00 0.00 3.28
5585 6137 4.793216 GCACGCTACAGTTTAATGGATTTG 59.207 41.667 0.00 0.00 0.00 2.32
5586 6138 4.436852 CGCACGCTACAGTTTAATGGATTT 60.437 41.667 0.00 0.00 0.00 2.17
5587 6139 3.063452 CGCACGCTACAGTTTAATGGATT 59.937 43.478 0.00 0.00 0.00 3.01
5588 6140 2.607635 CGCACGCTACAGTTTAATGGAT 59.392 45.455 0.00 0.00 0.00 3.41
5589 6141 1.996898 CGCACGCTACAGTTTAATGGA 59.003 47.619 0.00 0.00 0.00 3.41
5590 6142 1.996898 TCGCACGCTACAGTTTAATGG 59.003 47.619 0.00 0.00 0.00 3.16
5591 6143 3.715618 TTCGCACGCTACAGTTTAATG 57.284 42.857 0.00 0.00 0.00 1.90
5592 6144 3.063452 CCATTCGCACGCTACAGTTTAAT 59.937 43.478 0.00 0.00 0.00 1.40
5593 6145 2.413796 CCATTCGCACGCTACAGTTTAA 59.586 45.455 0.00 0.00 0.00 1.52
5594 6146 1.996898 CCATTCGCACGCTACAGTTTA 59.003 47.619 0.00 0.00 0.00 2.01
5595 6147 0.796312 CCATTCGCACGCTACAGTTT 59.204 50.000 0.00 0.00 0.00 2.66
5596 6148 1.019278 CCCATTCGCACGCTACAGTT 61.019 55.000 0.00 0.00 0.00 3.16
5597 6149 1.447838 CCCATTCGCACGCTACAGT 60.448 57.895 0.00 0.00 0.00 3.55
5598 6150 0.530650 ATCCCATTCGCACGCTACAG 60.531 55.000 0.00 0.00 0.00 2.74
5599 6151 0.809636 CATCCCATTCGCACGCTACA 60.810 55.000 0.00 0.00 0.00 2.74
5600 6152 1.934463 CATCCCATTCGCACGCTAC 59.066 57.895 0.00 0.00 0.00 3.58
5601 6153 1.887242 GCATCCCATTCGCACGCTA 60.887 57.895 0.00 0.00 0.00 4.26
5602 6154 3.204827 GCATCCCATTCGCACGCT 61.205 61.111 0.00 0.00 0.00 5.07
5603 6155 4.256090 GGCATCCCATTCGCACGC 62.256 66.667 0.00 0.00 0.00 5.34
5604 6156 3.585990 GGGCATCCCATTCGCACG 61.586 66.667 0.00 0.00 44.65 5.34
5614 6166 1.405933 GCATTCAAAACAGGGGCATCC 60.406 52.381 0.00 0.00 0.00 3.51
5615 6167 1.275856 TGCATTCAAAACAGGGGCATC 59.724 47.619 0.00 0.00 0.00 3.91
5616 6168 1.350071 TGCATTCAAAACAGGGGCAT 58.650 45.000 0.00 0.00 0.00 4.40
5617 6169 1.350071 ATGCATTCAAAACAGGGGCA 58.650 45.000 0.00 0.00 0.00 5.36
5618 6170 2.027837 AGAATGCATTCAAAACAGGGGC 60.028 45.455 34.59 9.78 39.23 5.80
5619 6171 3.512724 AGAGAATGCATTCAAAACAGGGG 59.487 43.478 34.59 0.00 39.23 4.79
5620 6172 4.796038 AGAGAATGCATTCAAAACAGGG 57.204 40.909 34.59 0.00 39.23 4.45
5621 6173 7.486802 AAAAAGAGAATGCATTCAAAACAGG 57.513 32.000 34.59 0.00 39.23 4.00
5681 6233 9.562408 TCCGGTAATATGCAGTAAATATTTGAA 57.438 29.630 11.05 0.00 33.38 2.69
5682 6234 9.562408 TTCCGGTAATATGCAGTAAATATTTGA 57.438 29.630 11.05 0.00 33.38 2.69
5716 6268 4.448732 GTGATTGCTCATGTTTTCCCAAAC 59.551 41.667 0.00 0.00 42.49 2.93
5717 6269 4.344679 AGTGATTGCTCATGTTTTCCCAAA 59.655 37.500 0.00 0.00 32.98 3.28
5718 6270 3.896888 AGTGATTGCTCATGTTTTCCCAA 59.103 39.130 0.00 0.00 32.98 4.12
5719 6271 3.499338 AGTGATTGCTCATGTTTTCCCA 58.501 40.909 0.00 0.00 32.98 4.37
5720 6272 5.393461 CCTTAGTGATTGCTCATGTTTTCCC 60.393 44.000 0.00 0.00 32.98 3.97
5721 6273 5.183904 ACCTTAGTGATTGCTCATGTTTTCC 59.816 40.000 0.00 0.00 32.98 3.13
5722 6274 6.072508 TGACCTTAGTGATTGCTCATGTTTTC 60.073 38.462 0.00 0.00 32.98 2.29
5723 6275 5.769662 TGACCTTAGTGATTGCTCATGTTTT 59.230 36.000 0.00 0.00 32.98 2.43
5724 6276 5.182001 GTGACCTTAGTGATTGCTCATGTTT 59.818 40.000 0.00 0.00 32.98 2.83
5725 6277 4.697352 GTGACCTTAGTGATTGCTCATGTT 59.303 41.667 0.00 0.00 32.98 2.71
5726 6278 4.019860 AGTGACCTTAGTGATTGCTCATGT 60.020 41.667 0.00 0.00 32.98 3.21
5727 6279 4.511527 AGTGACCTTAGTGATTGCTCATG 58.488 43.478 0.00 0.00 32.98 3.07
5728 6280 4.679106 CGAGTGACCTTAGTGATTGCTCAT 60.679 45.833 0.00 0.00 32.98 2.90
5729 6281 3.367395 CGAGTGACCTTAGTGATTGCTCA 60.367 47.826 0.00 0.00 0.00 4.26
5730 6282 3.182967 CGAGTGACCTTAGTGATTGCTC 58.817 50.000 0.00 0.00 0.00 4.26
5731 6283 2.093973 CCGAGTGACCTTAGTGATTGCT 60.094 50.000 0.00 0.00 0.00 3.91
5732 6284 2.271800 CCGAGTGACCTTAGTGATTGC 58.728 52.381 0.00 0.00 0.00 3.56
5733 6285 3.594603 ACCGAGTGACCTTAGTGATTG 57.405 47.619 0.00 0.00 0.00 2.67
5734 6286 3.576982 TCAACCGAGTGACCTTAGTGATT 59.423 43.478 0.00 0.00 0.00 2.57
5735 6287 3.162666 TCAACCGAGTGACCTTAGTGAT 58.837 45.455 0.00 0.00 0.00 3.06
5736 6288 2.589720 TCAACCGAGTGACCTTAGTGA 58.410 47.619 0.00 0.00 0.00 3.41
5737 6289 3.380479 TTCAACCGAGTGACCTTAGTG 57.620 47.619 0.00 0.00 0.00 2.74
5738 6290 3.387050 AGTTTCAACCGAGTGACCTTAGT 59.613 43.478 0.00 0.00 0.00 2.24
5739 6291 3.741344 CAGTTTCAACCGAGTGACCTTAG 59.259 47.826 0.00 0.00 0.00 2.18
5740 6292 3.724374 CAGTTTCAACCGAGTGACCTTA 58.276 45.455 0.00 0.00 0.00 2.69
5741 6293 2.561569 CAGTTTCAACCGAGTGACCTT 58.438 47.619 0.00 0.00 0.00 3.50
5742 6294 1.810412 GCAGTTTCAACCGAGTGACCT 60.810 52.381 0.00 0.00 0.00 3.85
5743 6295 0.586802 GCAGTTTCAACCGAGTGACC 59.413 55.000 0.00 0.00 0.00 4.02
5744 6296 1.295792 TGCAGTTTCAACCGAGTGAC 58.704 50.000 0.00 0.00 0.00 3.67
5745 6297 1.668751 GTTGCAGTTTCAACCGAGTGA 59.331 47.619 0.00 0.00 40.18 3.41
5746 6298 1.400142 TGTTGCAGTTTCAACCGAGTG 59.600 47.619 4.46 0.00 44.15 3.51
5747 6299 1.745232 TGTTGCAGTTTCAACCGAGT 58.255 45.000 4.46 0.00 44.15 4.18
5748 6300 2.842208 TTGTTGCAGTTTCAACCGAG 57.158 45.000 4.46 0.00 44.15 4.63
5749 6301 3.791973 ATTTGTTGCAGTTTCAACCGA 57.208 38.095 4.46 0.00 44.15 4.69
5750 6302 3.616379 ACAATTTGTTGCAGTTTCAACCG 59.384 39.130 0.00 0.00 44.15 4.44
5751 6303 4.629200 TGACAATTTGTTGCAGTTTCAACC 59.371 37.500 3.08 0.00 44.15 3.77
5752 6304 5.776519 TGACAATTTGTTGCAGTTTCAAC 57.223 34.783 3.08 0.14 44.80 3.18
5753 6305 5.220624 GCATGACAATTTGTTGCAGTTTCAA 60.221 36.000 17.30 0.00 35.00 2.69
5754 6306 4.270566 GCATGACAATTTGTTGCAGTTTCA 59.729 37.500 17.30 4.15 35.00 2.69
5755 6307 4.270566 TGCATGACAATTTGTTGCAGTTTC 59.729 37.500 19.82 0.47 38.67 2.78
5756 6308 4.190001 TGCATGACAATTTGTTGCAGTTT 58.810 34.783 19.82 0.00 38.67 2.66
5757 6309 3.794717 TGCATGACAATTTGTTGCAGTT 58.205 36.364 19.82 0.00 38.67 3.16
5758 6310 3.455990 TGCATGACAATTTGTTGCAGT 57.544 38.095 19.82 0.00 38.67 4.40
5759 6311 3.743911 ACATGCATGACAATTTGTTGCAG 59.256 39.130 32.75 20.02 44.27 4.41
5760 6312 3.495001 CACATGCATGACAATTTGTTGCA 59.505 39.130 32.75 23.78 44.88 4.08
5761 6313 3.495377 ACACATGCATGACAATTTGTTGC 59.505 39.130 32.75 15.95 35.34 4.17
5762 6314 5.346551 CCTACACATGCATGACAATTTGTTG 59.653 40.000 32.75 22.37 0.00 3.33
5763 6315 5.243507 TCCTACACATGCATGACAATTTGTT 59.756 36.000 32.75 11.91 0.00 2.83
5764 6316 4.766373 TCCTACACATGCATGACAATTTGT 59.234 37.500 32.75 24.66 0.00 2.83
5765 6317 5.313520 TCCTACACATGCATGACAATTTG 57.686 39.130 32.75 20.49 0.00 2.32
5766 6318 5.163488 CCATCCTACACATGCATGACAATTT 60.163 40.000 32.75 6.55 0.00 1.82
5767 6319 4.340097 CCATCCTACACATGCATGACAATT 59.660 41.667 32.75 7.36 0.00 2.32
5768 6320 3.887110 CCATCCTACACATGCATGACAAT 59.113 43.478 32.75 16.09 0.00 2.71
5769 6321 3.281158 CCATCCTACACATGCATGACAA 58.719 45.455 32.75 15.21 0.00 3.18
5770 6322 2.421811 CCCATCCTACACATGCATGACA 60.422 50.000 32.75 15.24 0.00 3.58
5771 6323 2.158769 TCCCATCCTACACATGCATGAC 60.159 50.000 32.75 0.00 0.00 3.06
5772 6324 2.105306 CTCCCATCCTACACATGCATGA 59.895 50.000 32.75 9.93 0.00 3.07
5773 6325 2.501261 CTCCCATCCTACACATGCATG 58.499 52.381 25.09 25.09 0.00 4.06
5774 6326 1.202855 GCTCCCATCCTACACATGCAT 60.203 52.381 0.00 0.00 0.00 3.96
5775 6327 0.181114 GCTCCCATCCTACACATGCA 59.819 55.000 0.00 0.00 0.00 3.96
5776 6328 0.181114 TGCTCCCATCCTACACATGC 59.819 55.000 0.00 0.00 0.00 4.06
5777 6329 2.684881 GTTTGCTCCCATCCTACACATG 59.315 50.000 0.00 0.00 0.00 3.21
5778 6330 2.578021 AGTTTGCTCCCATCCTACACAT 59.422 45.455 0.00 0.00 0.00 3.21
5779 6331 1.985159 AGTTTGCTCCCATCCTACACA 59.015 47.619 0.00 0.00 0.00 3.72
5780 6332 2.789409 AGTTTGCTCCCATCCTACAC 57.211 50.000 0.00 0.00 0.00 2.90
5781 6333 3.806949 AAAGTTTGCTCCCATCCTACA 57.193 42.857 0.00 0.00 0.00 2.74
5782 6334 4.398358 GGTAAAAGTTTGCTCCCATCCTAC 59.602 45.833 0.00 0.00 0.00 3.18
5783 6335 4.043561 TGGTAAAAGTTTGCTCCCATCCTA 59.956 41.667 0.00 0.00 0.00 2.94
5784 6336 3.181423 TGGTAAAAGTTTGCTCCCATCCT 60.181 43.478 0.00 0.00 0.00 3.24
5785 6337 3.161866 TGGTAAAAGTTTGCTCCCATCC 58.838 45.455 0.00 0.00 0.00 3.51
5786 6338 4.864704 TTGGTAAAAGTTTGCTCCCATC 57.135 40.909 0.00 0.00 0.00 3.51
5787 6339 5.622346 TTTTGGTAAAAGTTTGCTCCCAT 57.378 34.783 0.00 0.00 0.00 4.00
5788 6340 5.179533 GTTTTTGGTAAAAGTTTGCTCCCA 58.820 37.500 0.00 0.00 34.08 4.37
5789 6341 5.064198 GTGTTTTTGGTAAAAGTTTGCTCCC 59.936 40.000 0.00 0.00 34.08 4.30
5790 6342 5.872617 AGTGTTTTTGGTAAAAGTTTGCTCC 59.127 36.000 0.00 0.00 34.08 4.70
5791 6343 6.961359 AGTGTTTTTGGTAAAAGTTTGCTC 57.039 33.333 0.00 0.00 34.08 4.26
5792 6344 6.348132 GCAAGTGTTTTTGGTAAAAGTTTGCT 60.348 34.615 13.40 0.00 39.23 3.91
5793 6345 5.792962 GCAAGTGTTTTTGGTAAAAGTTTGC 59.207 36.000 0.00 0.00 37.57 3.68
5794 6346 6.892691 TGCAAGTGTTTTTGGTAAAAGTTTG 58.107 32.000 0.00 0.00 34.08 2.93
5795 6347 7.680442 ATGCAAGTGTTTTTGGTAAAAGTTT 57.320 28.000 0.00 0.00 34.08 2.66
5796 6348 8.661257 GTTATGCAAGTGTTTTTGGTAAAAGTT 58.339 29.630 0.00 0.00 34.08 2.66
5797 6349 7.819900 TGTTATGCAAGTGTTTTTGGTAAAAGT 59.180 29.630 0.00 0.00 34.08 2.66
5798 6350 8.190888 TGTTATGCAAGTGTTTTTGGTAAAAG 57.809 30.769 0.00 0.00 34.08 2.27
5799 6351 8.547967 TTGTTATGCAAGTGTTTTTGGTAAAA 57.452 26.923 0.00 0.00 32.52 1.52
5800 6352 8.547967 TTTGTTATGCAAGTGTTTTTGGTAAA 57.452 26.923 0.00 0.00 38.47 2.01
5801 6353 8.547967 TTTTGTTATGCAAGTGTTTTTGGTAA 57.452 26.923 0.00 0.00 38.47 2.85
5802 6354 8.443937 GTTTTTGTTATGCAAGTGTTTTTGGTA 58.556 29.630 0.00 0.00 38.47 3.25
5803 6355 7.041098 TGTTTTTGTTATGCAAGTGTTTTTGGT 60.041 29.630 0.00 0.00 38.47 3.67
5804 6356 7.270151 GTGTTTTTGTTATGCAAGTGTTTTTGG 59.730 33.333 0.00 0.00 38.47 3.28
5805 6357 7.800380 TGTGTTTTTGTTATGCAAGTGTTTTTG 59.200 29.630 0.00 0.00 38.47 2.44
5806 6358 7.865707 TGTGTTTTTGTTATGCAAGTGTTTTT 58.134 26.923 0.00 0.00 38.47 1.94
5807 6359 7.426929 TGTGTTTTTGTTATGCAAGTGTTTT 57.573 28.000 0.00 0.00 38.47 2.43
5808 6360 7.426929 TTGTGTTTTTGTTATGCAAGTGTTT 57.573 28.000 0.00 0.00 38.47 2.83
5809 6361 7.118971 ACATTGTGTTTTTGTTATGCAAGTGTT 59.881 29.630 0.00 0.00 38.47 3.32
5810 6362 6.593382 ACATTGTGTTTTTGTTATGCAAGTGT 59.407 30.769 0.00 0.00 38.47 3.55
5811 6363 7.002816 ACATTGTGTTTTTGTTATGCAAGTG 57.997 32.000 0.00 0.00 38.47 3.16
5812 6364 7.608308 AACATTGTGTTTTTGTTATGCAAGT 57.392 28.000 0.00 0.00 37.26 3.16
5826 6378 8.635765 ATGGTATCTACTTCAAACATTGTGTT 57.364 30.769 0.00 0.00 43.41 3.32
5827 6379 8.514594 CAATGGTATCTACTTCAAACATTGTGT 58.485 33.333 0.00 0.00 39.15 3.72
5828 6380 8.729756 TCAATGGTATCTACTTCAAACATTGTG 58.270 33.333 10.67 0.00 42.52 3.33
5829 6381 8.862325 TCAATGGTATCTACTTCAAACATTGT 57.138 30.769 10.67 0.00 42.52 2.71
5830 6382 8.950210 ACTCAATGGTATCTACTTCAAACATTG 58.050 33.333 0.00 0.00 43.00 2.82
5831 6383 9.167311 GACTCAATGGTATCTACTTCAAACATT 57.833 33.333 0.00 0.00 0.00 2.71
5832 6384 8.321353 TGACTCAATGGTATCTACTTCAAACAT 58.679 33.333 0.00 0.00 0.00 2.71
5833 6385 7.676004 TGACTCAATGGTATCTACTTCAAACA 58.324 34.615 0.00 0.00 0.00 2.83
5834 6386 8.723942 ATGACTCAATGGTATCTACTTCAAAC 57.276 34.615 0.00 0.00 0.00 2.93
5835 6387 9.166173 CAATGACTCAATGGTATCTACTTCAAA 57.834 33.333 0.00 0.00 0.00 2.69
5836 6388 7.280876 GCAATGACTCAATGGTATCTACTTCAA 59.719 37.037 0.00 0.00 0.00 2.69
5837 6389 6.763135 GCAATGACTCAATGGTATCTACTTCA 59.237 38.462 0.00 0.00 0.00 3.02
5838 6390 6.763135 TGCAATGACTCAATGGTATCTACTTC 59.237 38.462 0.00 0.00 0.00 3.01
5839 6391 6.653020 TGCAATGACTCAATGGTATCTACTT 58.347 36.000 0.00 0.00 0.00 2.24
5840 6392 6.239217 TGCAATGACTCAATGGTATCTACT 57.761 37.500 0.00 0.00 0.00 2.57
5841 6393 6.316140 TGTTGCAATGACTCAATGGTATCTAC 59.684 38.462 0.59 0.00 0.00 2.59
5842 6394 6.316140 GTGTTGCAATGACTCAATGGTATCTA 59.684 38.462 0.59 0.00 0.00 1.98
5843 6395 5.124457 GTGTTGCAATGACTCAATGGTATCT 59.876 40.000 0.59 0.00 0.00 1.98
5844 6396 5.335127 GTGTTGCAATGACTCAATGGTATC 58.665 41.667 0.59 0.00 0.00 2.24
5845 6397 4.142622 CGTGTTGCAATGACTCAATGGTAT 60.143 41.667 0.59 0.00 0.00 2.73
5846 6398 3.188254 CGTGTTGCAATGACTCAATGGTA 59.812 43.478 0.59 0.00 0.00 3.25
5847 6399 2.030893 CGTGTTGCAATGACTCAATGGT 60.031 45.455 0.59 0.00 0.00 3.55
5848 6400 2.030893 ACGTGTTGCAATGACTCAATGG 60.031 45.455 0.59 0.00 0.00 3.16
5849 6401 3.058708 AGACGTGTTGCAATGACTCAATG 60.059 43.478 0.59 0.00 0.00 2.82
5850 6402 3.141398 AGACGTGTTGCAATGACTCAAT 58.859 40.909 0.59 0.00 0.00 2.57
5851 6403 2.543848 GAGACGTGTTGCAATGACTCAA 59.456 45.455 0.59 0.00 0.00 3.02
5852 6404 2.135139 GAGACGTGTTGCAATGACTCA 58.865 47.619 0.59 0.00 0.00 3.41
5853 6405 2.096713 GTGAGACGTGTTGCAATGACTC 60.097 50.000 0.59 11.37 0.00 3.36
5854 6406 1.867233 GTGAGACGTGTTGCAATGACT 59.133 47.619 0.59 1.60 0.00 3.41
5855 6407 1.597195 TGTGAGACGTGTTGCAATGAC 59.403 47.619 0.59 1.64 0.00 3.06
5856 6408 1.597195 GTGTGAGACGTGTTGCAATGA 59.403 47.619 0.59 0.00 0.00 2.57
5857 6409 1.334059 GGTGTGAGACGTGTTGCAATG 60.334 52.381 0.59 0.00 0.00 2.82
5858 6410 0.944386 GGTGTGAGACGTGTTGCAAT 59.056 50.000 0.59 0.00 0.00 3.56
5859 6411 1.092921 GGGTGTGAGACGTGTTGCAA 61.093 55.000 0.00 0.00 0.00 4.08
5860 6412 1.522806 GGGTGTGAGACGTGTTGCA 60.523 57.895 0.00 0.00 0.00 4.08
5861 6413 2.594962 CGGGTGTGAGACGTGTTGC 61.595 63.158 0.00 0.00 0.00 4.17
5862 6414 1.066752 TCGGGTGTGAGACGTGTTG 59.933 57.895 0.00 0.00 0.00 3.33
5863 6415 3.528853 TCGGGTGTGAGACGTGTT 58.471 55.556 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.