Multiple sequence alignment - TraesCS1A01G086000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G086000 chr1A 100.000 2549 0 0 1 2549 71839069 71841617 0.000000e+00 4708
1 TraesCS1A01G086000 chr1A 89.764 508 28 2 1 485 360163366 360163872 1.660000e-176 628
2 TraesCS1A01G086000 chr1A 97.778 90 1 1 484 572 109159241 109159330 1.220000e-33 154
3 TraesCS1A01G086000 chr1A 97.778 90 1 1 484 572 233864237 233864148 1.220000e-33 154
4 TraesCS1A01G086000 chr1A 97.778 90 1 1 484 572 356522632 356522543 1.220000e-33 154
5 TraesCS1A01G086000 chr1A 97.778 90 1 1 484 572 441373737 441373648 1.220000e-33 154
6 TraesCS1A01G086000 chr2B 99.041 1982 18 1 569 2549 776222957 776224938 0.000000e+00 3554
7 TraesCS1A01G086000 chr2B 98.643 1990 23 3 564 2549 788228848 788230837 0.000000e+00 3522
8 TraesCS1A01G086000 chr2B 96.926 488 15 0 1 488 285211013 285210526 0.000000e+00 819
9 TraesCS1A01G086000 chr2B 86.938 467 37 10 47 490 376111324 376110859 1.050000e-138 503
10 TraesCS1A01G086000 chr3B 99.039 1977 18 1 573 2549 702857654 702855679 0.000000e+00 3544
11 TraesCS1A01G086000 chr3B 98.975 488 5 0 1 488 758898843 758899330 0.000000e+00 874
12 TraesCS1A01G086000 chr5B 98.940 1982 19 2 569 2549 641128782 641126802 0.000000e+00 3542
13 TraesCS1A01G086000 chr7B 98.795 1991 18 5 559 2549 202776905 202778889 0.000000e+00 3539
14 TraesCS1A01G086000 chr3A 98.746 1994 19 4 558 2549 9952647 9954636 0.000000e+00 3539
15 TraesCS1A01G086000 chr3A 98.842 1986 21 2 564 2549 54951910 54953893 0.000000e+00 3539
16 TraesCS1A01G086000 chr3A 98.594 1992 26 2 559 2549 77771302 77773292 0.000000e+00 3522
17 TraesCS1A01G086000 chr3A 97.778 90 1 1 484 572 528099239 528099150 1.220000e-33 154
18 TraesCS1A01G086000 chr7A 98.938 1977 21 0 573 2549 39015368 39017344 0.000000e+00 3535
19 TraesCS1A01G086000 chr2A 98.770 488 6 0 1 488 726291099 726290612 0.000000e+00 869
20 TraesCS1A01G086000 chr2A 98.889 90 0 1 484 572 525847219 525847308 2.620000e-35 159
21 TraesCS1A01G086000 chr7D 96.371 496 10 2 1 488 277756431 277755936 0.000000e+00 809
22 TraesCS1A01G086000 chr1B 96.258 481 18 0 1 481 33176368 33176848 0.000000e+00 789
23 TraesCS1A01G086000 chr1B 85.983 478 31 16 47 490 225805694 225806169 1.770000e-131 479
24 TraesCS1A01G086000 chr1B 83.254 209 14 10 280 471 296053733 296053529 3.370000e-39 172
25 TraesCS1A01G086000 chr5A 85.535 477 34 15 47 490 584488863 584489337 1.380000e-127 466
26 TraesCS1A01G086000 chr6A 97.778 90 1 1 484 572 97864515 97864426 1.220000e-33 154
27 TraesCS1A01G086000 chr6A 97.778 90 1 1 484 572 471006457 471006546 1.220000e-33 154
28 TraesCS1A01G086000 chr6A 97.778 90 1 1 484 572 526874520 526874431 1.220000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G086000 chr1A 71839069 71841617 2548 False 4708 4708 100.000 1 2549 1 chr1A.!!$F1 2548
1 TraesCS1A01G086000 chr1A 360163366 360163872 506 False 628 628 89.764 1 485 1 chr1A.!!$F3 484
2 TraesCS1A01G086000 chr2B 776222957 776224938 1981 False 3554 3554 99.041 569 2549 1 chr2B.!!$F1 1980
3 TraesCS1A01G086000 chr2B 788228848 788230837 1989 False 3522 3522 98.643 564 2549 1 chr2B.!!$F2 1985
4 TraesCS1A01G086000 chr3B 702855679 702857654 1975 True 3544 3544 99.039 573 2549 1 chr3B.!!$R1 1976
5 TraesCS1A01G086000 chr5B 641126802 641128782 1980 True 3542 3542 98.940 569 2549 1 chr5B.!!$R1 1980
6 TraesCS1A01G086000 chr7B 202776905 202778889 1984 False 3539 3539 98.795 559 2549 1 chr7B.!!$F1 1990
7 TraesCS1A01G086000 chr3A 9952647 9954636 1989 False 3539 3539 98.746 558 2549 1 chr3A.!!$F1 1991
8 TraesCS1A01G086000 chr3A 54951910 54953893 1983 False 3539 3539 98.842 564 2549 1 chr3A.!!$F2 1985
9 TraesCS1A01G086000 chr3A 77771302 77773292 1990 False 3522 3522 98.594 559 2549 1 chr3A.!!$F3 1990
10 TraesCS1A01G086000 chr7A 39015368 39017344 1976 False 3535 3535 98.938 573 2549 1 chr7A.!!$F1 1976

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
284 285 0.107654 GCTGCGGTAAATCCTCACCT 60.108 55.0 0.0 0.0 32.29 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2210 2260 0.901114 TGTCCTAGCGGTTACCAGCA 60.901 55.0 17.3 5.89 35.48 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 5.069318 TGCATTTGATTACTGAGGTGTCAA 58.931 37.500 0.00 0.00 33.14 3.18
70 71 3.376234 GTGTCAATCAGTGCATGCTATGT 59.624 43.478 20.33 5.76 0.00 2.29
72 73 2.356695 TCAATCAGTGCATGCTATGTGC 59.643 45.455 20.33 2.33 42.81 4.57
84 85 3.323758 TATGTGCGTGTGGGAGGCC 62.324 63.158 0.00 0.00 34.34 5.19
106 107 1.126846 GCATGTCACTGTCGTTGTAGC 59.873 52.381 0.00 0.00 0.00 3.58
128 129 1.244019 AAGGAGCCGCACCATTTGAC 61.244 55.000 9.69 0.00 0.00 3.18
155 156 2.422377 CCTCCATCCATCATGCTTGTGA 60.422 50.000 0.00 0.00 0.00 3.58
156 157 3.284617 CTCCATCCATCATGCTTGTGAA 58.715 45.455 0.00 0.00 0.00 3.18
157 158 3.889538 CTCCATCCATCATGCTTGTGAAT 59.110 43.478 0.00 0.00 0.00 2.57
158 159 3.887110 TCCATCCATCATGCTTGTGAATC 59.113 43.478 0.00 0.00 0.00 2.52
159 160 3.889538 CCATCCATCATGCTTGTGAATCT 59.110 43.478 0.00 0.00 0.00 2.40
160 161 4.261614 CCATCCATCATGCTTGTGAATCTG 60.262 45.833 0.00 0.00 0.00 2.90
161 162 4.224991 TCCATCATGCTTGTGAATCTGA 57.775 40.909 0.00 0.00 0.00 3.27
162 163 4.788679 TCCATCATGCTTGTGAATCTGAT 58.211 39.130 0.00 0.00 0.00 2.90
163 164 4.578928 TCCATCATGCTTGTGAATCTGATG 59.421 41.667 0.00 0.00 39.61 3.07
164 165 4.290969 CATCATGCTTGTGAATCTGATGC 58.709 43.478 0.00 0.00 35.20 3.91
165 166 3.617284 TCATGCTTGTGAATCTGATGCT 58.383 40.909 0.00 0.00 0.00 3.79
166 167 3.626217 TCATGCTTGTGAATCTGATGCTC 59.374 43.478 0.00 0.00 0.00 4.26
167 168 3.345508 TGCTTGTGAATCTGATGCTCT 57.654 42.857 0.00 0.00 0.00 4.09
168 169 3.007635 TGCTTGTGAATCTGATGCTCTG 58.992 45.455 0.00 0.00 0.00 3.35
169 170 3.268330 GCTTGTGAATCTGATGCTCTGA 58.732 45.455 0.00 0.00 0.00 3.27
170 171 3.688185 GCTTGTGAATCTGATGCTCTGAA 59.312 43.478 0.00 0.00 0.00 3.02
171 172 4.335874 GCTTGTGAATCTGATGCTCTGAAT 59.664 41.667 0.00 0.00 0.00 2.57
172 173 5.504337 GCTTGTGAATCTGATGCTCTGAATC 60.504 44.000 0.00 0.00 0.00 2.52
173 174 5.093849 TGTGAATCTGATGCTCTGAATCA 57.906 39.130 0.00 6.68 33.68 2.57
174 175 5.681639 TGTGAATCTGATGCTCTGAATCAT 58.318 37.500 11.20 0.00 36.88 2.45
175 176 6.823497 TGTGAATCTGATGCTCTGAATCATA 58.177 36.000 11.20 7.94 36.88 2.15
176 177 7.450903 TGTGAATCTGATGCTCTGAATCATAT 58.549 34.615 11.20 0.00 36.88 1.78
177 178 7.603024 TGTGAATCTGATGCTCTGAATCATATC 59.397 37.037 11.20 0.00 36.88 1.63
178 179 7.064847 GTGAATCTGATGCTCTGAATCATATCC 59.935 40.741 11.20 0.97 36.88 2.59
179 180 6.622427 ATCTGATGCTCTGAATCATATCCA 57.378 37.500 0.00 0.00 33.69 3.41
180 181 6.622427 TCTGATGCTCTGAATCATATCCAT 57.378 37.500 0.00 0.00 33.69 3.41
181 182 6.407202 TCTGATGCTCTGAATCATATCCATG 58.593 40.000 0.00 0.00 33.69 3.66
182 183 6.212791 TCTGATGCTCTGAATCATATCCATGA 59.787 38.462 0.00 0.00 45.15 3.07
183 184 6.171213 TGATGCTCTGAATCATATCCATGAC 58.829 40.000 0.00 0.00 43.89 3.06
184 185 4.903054 TGCTCTGAATCATATCCATGACC 58.097 43.478 0.00 0.00 43.89 4.02
185 186 4.348754 TGCTCTGAATCATATCCATGACCA 59.651 41.667 0.00 0.00 43.89 4.02
186 187 4.936411 GCTCTGAATCATATCCATGACCAG 59.064 45.833 0.00 10.33 43.89 4.00
187 188 5.279859 GCTCTGAATCATATCCATGACCAGA 60.280 44.000 15.08 15.08 43.89 3.86
188 189 6.576641 GCTCTGAATCATATCCATGACCAGAT 60.577 42.308 15.74 0.00 44.53 2.90
189 190 6.708285 TCTGAATCATATCCATGACCAGATG 58.292 40.000 13.25 0.00 43.89 2.90
190 191 5.250982 TGAATCATATCCATGACCAGATGC 58.749 41.667 0.00 0.00 43.89 3.91
191 192 4.921644 ATCATATCCATGACCAGATGCA 57.078 40.909 0.00 0.00 43.89 3.96
192 193 4.921644 TCATATCCATGACCAGATGCAT 57.078 40.909 0.00 0.00 36.22 3.96
193 194 5.251182 TCATATCCATGACCAGATGCATT 57.749 39.130 0.00 0.00 36.22 3.56
194 195 5.637127 TCATATCCATGACCAGATGCATTT 58.363 37.500 0.00 0.00 36.22 2.32
195 196 6.781943 TCATATCCATGACCAGATGCATTTA 58.218 36.000 0.00 0.00 36.22 1.40
196 197 7.232910 TCATATCCATGACCAGATGCATTTAA 58.767 34.615 0.00 0.00 36.22 1.52
197 198 5.779529 ATCCATGACCAGATGCATTTAAC 57.220 39.130 0.00 0.00 0.00 2.01
198 199 4.858850 TCCATGACCAGATGCATTTAACT 58.141 39.130 0.00 0.00 0.00 2.24
199 200 4.641541 TCCATGACCAGATGCATTTAACTG 59.358 41.667 0.00 3.17 0.00 3.16
200 201 4.641541 CCATGACCAGATGCATTTAACTGA 59.358 41.667 13.26 0.00 32.90 3.41
201 202 5.125900 CCATGACCAGATGCATTTAACTGAA 59.874 40.000 13.26 1.60 32.90 3.02
202 203 5.885230 TGACCAGATGCATTTAACTGAAG 57.115 39.130 13.26 2.37 32.90 3.02
203 204 4.701651 TGACCAGATGCATTTAACTGAAGG 59.298 41.667 13.26 1.11 32.90 3.46
204 205 4.666512 ACCAGATGCATTTAACTGAAGGT 58.333 39.130 13.26 1.69 32.90 3.50
205 206 4.460382 ACCAGATGCATTTAACTGAAGGTG 59.540 41.667 13.26 1.18 32.90 4.00
206 207 4.701651 CCAGATGCATTTAACTGAAGGTGA 59.298 41.667 13.26 0.00 32.90 4.02
207 208 5.163683 CCAGATGCATTTAACTGAAGGTGAG 60.164 44.000 13.26 0.00 32.90 3.51
208 209 4.946157 AGATGCATTTAACTGAAGGTGAGG 59.054 41.667 0.00 0.00 0.00 3.86
209 210 4.098914 TGCATTTAACTGAAGGTGAGGT 57.901 40.909 0.00 0.00 0.00 3.85
210 211 3.820467 TGCATTTAACTGAAGGTGAGGTG 59.180 43.478 0.00 0.00 0.00 4.00
211 212 4.072131 GCATTTAACTGAAGGTGAGGTGA 58.928 43.478 0.00 0.00 0.00 4.02
212 213 4.154918 GCATTTAACTGAAGGTGAGGTGAG 59.845 45.833 0.00 0.00 0.00 3.51
213 214 5.551233 CATTTAACTGAAGGTGAGGTGAGA 58.449 41.667 0.00 0.00 0.00 3.27
214 215 5.623956 TTTAACTGAAGGTGAGGTGAGAA 57.376 39.130 0.00 0.00 0.00 2.87
215 216 3.760580 AACTGAAGGTGAGGTGAGAAG 57.239 47.619 0.00 0.00 0.00 2.85
216 217 2.964209 ACTGAAGGTGAGGTGAGAAGA 58.036 47.619 0.00 0.00 0.00 2.87
217 218 2.896685 ACTGAAGGTGAGGTGAGAAGAG 59.103 50.000 0.00 0.00 0.00 2.85
218 219 1.620819 TGAAGGTGAGGTGAGAAGAGC 59.379 52.381 0.00 0.00 0.00 4.09
219 220 1.620819 GAAGGTGAGGTGAGAAGAGCA 59.379 52.381 0.00 0.00 0.00 4.26
220 221 1.265236 AGGTGAGGTGAGAAGAGCAG 58.735 55.000 0.00 0.00 0.00 4.24
221 222 1.203112 AGGTGAGGTGAGAAGAGCAGA 60.203 52.381 0.00 0.00 0.00 4.26
222 223 1.620819 GGTGAGGTGAGAAGAGCAGAA 59.379 52.381 0.00 0.00 0.00 3.02
223 224 2.235898 GGTGAGGTGAGAAGAGCAGAAT 59.764 50.000 0.00 0.00 0.00 2.40
224 225 3.449018 GGTGAGGTGAGAAGAGCAGAATA 59.551 47.826 0.00 0.00 0.00 1.75
225 226 4.429108 GTGAGGTGAGAAGAGCAGAATAC 58.571 47.826 0.00 0.00 0.00 1.89
226 227 4.081972 GTGAGGTGAGAAGAGCAGAATACA 60.082 45.833 0.00 0.00 0.00 2.29
227 228 4.159321 TGAGGTGAGAAGAGCAGAATACAG 59.841 45.833 0.00 0.00 0.00 2.74
228 229 4.348486 AGGTGAGAAGAGCAGAATACAGA 58.652 43.478 0.00 0.00 0.00 3.41
229 230 4.159506 AGGTGAGAAGAGCAGAATACAGAC 59.840 45.833 0.00 0.00 0.00 3.51
230 231 4.159506 GGTGAGAAGAGCAGAATACAGACT 59.840 45.833 0.00 0.00 0.00 3.24
231 232 5.358442 GGTGAGAAGAGCAGAATACAGACTA 59.642 44.000 0.00 0.00 0.00 2.59
232 233 6.262601 GTGAGAAGAGCAGAATACAGACTAC 58.737 44.000 0.00 0.00 0.00 2.73
233 234 5.946377 TGAGAAGAGCAGAATACAGACTACA 59.054 40.000 0.00 0.00 0.00 2.74
234 235 6.094742 TGAGAAGAGCAGAATACAGACTACAG 59.905 42.308 0.00 0.00 0.00 2.74
235 236 6.184068 AGAAGAGCAGAATACAGACTACAGA 58.816 40.000 0.00 0.00 0.00 3.41
236 237 6.318648 AGAAGAGCAGAATACAGACTACAGAG 59.681 42.308 0.00 0.00 0.00 3.35
237 238 4.887071 AGAGCAGAATACAGACTACAGAGG 59.113 45.833 0.00 0.00 0.00 3.69
238 239 4.861196 AGCAGAATACAGACTACAGAGGA 58.139 43.478 0.00 0.00 0.00 3.71
239 240 5.454062 AGCAGAATACAGACTACAGAGGAT 58.546 41.667 0.00 0.00 0.00 3.24
240 241 5.301551 AGCAGAATACAGACTACAGAGGATG 59.698 44.000 0.00 0.00 0.00 3.51
241 242 5.300539 GCAGAATACAGACTACAGAGGATGA 59.699 44.000 0.00 0.00 0.00 2.92
242 243 6.183360 GCAGAATACAGACTACAGAGGATGAA 60.183 42.308 0.00 0.00 0.00 2.57
243 244 7.199766 CAGAATACAGACTACAGAGGATGAAC 58.800 42.308 0.00 0.00 0.00 3.18
244 245 7.068103 CAGAATACAGACTACAGAGGATGAACT 59.932 40.741 0.00 0.00 0.00 3.01
245 246 8.275758 AGAATACAGACTACAGAGGATGAACTA 58.724 37.037 0.00 0.00 0.00 2.24
246 247 8.458573 AATACAGACTACAGAGGATGAACTAG 57.541 38.462 0.00 0.00 0.00 2.57
247 248 6.068461 ACAGACTACAGAGGATGAACTAGA 57.932 41.667 0.00 0.00 0.00 2.43
248 249 6.668645 ACAGACTACAGAGGATGAACTAGAT 58.331 40.000 0.00 0.00 0.00 1.98
249 250 6.545666 ACAGACTACAGAGGATGAACTAGATG 59.454 42.308 0.00 0.00 0.00 2.90
250 251 5.534654 AGACTACAGAGGATGAACTAGATGC 59.465 44.000 0.00 0.00 0.00 3.91
251 252 5.204292 ACTACAGAGGATGAACTAGATGCA 58.796 41.667 0.00 0.00 0.00 3.96
252 253 5.837979 ACTACAGAGGATGAACTAGATGCAT 59.162 40.000 0.00 0.00 0.00 3.96
253 254 5.627182 ACAGAGGATGAACTAGATGCATT 57.373 39.130 0.00 0.00 0.00 3.56
254 255 5.999044 ACAGAGGATGAACTAGATGCATTT 58.001 37.500 0.00 0.00 0.00 2.32
255 256 7.129457 ACAGAGGATGAACTAGATGCATTTA 57.871 36.000 0.00 0.00 0.00 1.40
256 257 7.568349 ACAGAGGATGAACTAGATGCATTTAA 58.432 34.615 0.00 0.00 0.00 1.52
257 258 7.497249 ACAGAGGATGAACTAGATGCATTTAAC 59.503 37.037 0.00 0.00 0.00 2.01
258 259 7.714377 CAGAGGATGAACTAGATGCATTTAACT 59.286 37.037 0.00 0.00 0.00 2.24
259 260 8.928448 AGAGGATGAACTAGATGCATTTAACTA 58.072 33.333 0.00 0.00 0.00 2.24
260 261 8.894768 AGGATGAACTAGATGCATTTAACTAC 57.105 34.615 0.00 0.00 0.00 2.73
261 262 8.486210 AGGATGAACTAGATGCATTTAACTACA 58.514 33.333 0.00 0.00 0.00 2.74
262 263 8.768955 GGATGAACTAGATGCATTTAACTACAG 58.231 37.037 0.00 0.00 0.00 2.74
263 264 7.539712 TGAACTAGATGCATTTAACTACAGC 57.460 36.000 0.00 0.00 0.00 4.40
264 265 6.255670 TGAACTAGATGCATTTAACTACAGCG 59.744 38.462 0.00 0.00 0.00 5.18
265 266 5.050490 ACTAGATGCATTTAACTACAGCGG 58.950 41.667 0.00 0.00 0.00 5.52
266 267 2.614057 AGATGCATTTAACTACAGCGGC 59.386 45.455 0.00 0.00 0.00 6.53
267 268 2.107950 TGCATTTAACTACAGCGGCT 57.892 45.000 0.00 0.00 0.00 5.52
268 269 1.737236 TGCATTTAACTACAGCGGCTG 59.263 47.619 27.43 27.43 37.52 4.85
269 270 1.531883 GCATTTAACTACAGCGGCTGC 60.532 52.381 28.80 10.33 43.24 5.25
279 280 2.513897 GCGGCTGCGGTAAATCCT 60.514 61.111 0.00 0.00 0.00 3.24
280 281 2.534903 GCGGCTGCGGTAAATCCTC 61.535 63.158 0.00 0.00 0.00 3.71
281 282 1.153449 CGGCTGCGGTAAATCCTCA 60.153 57.895 0.00 0.00 0.00 3.86
282 283 1.429148 CGGCTGCGGTAAATCCTCAC 61.429 60.000 0.00 0.00 0.00 3.51
283 284 1.095807 GGCTGCGGTAAATCCTCACC 61.096 60.000 0.00 0.00 0.00 4.02
284 285 0.107654 GCTGCGGTAAATCCTCACCT 60.108 55.000 0.00 0.00 32.29 4.00
285 286 1.941325 CTGCGGTAAATCCTCACCTC 58.059 55.000 0.00 0.00 32.29 3.85
286 287 0.174845 TGCGGTAAATCCTCACCTCG 59.825 55.000 0.00 0.00 32.29 4.63
287 288 0.529992 GCGGTAAATCCTCACCTCGG 60.530 60.000 0.00 0.00 32.29 4.63
288 289 1.108776 CGGTAAATCCTCACCTCGGA 58.891 55.000 0.00 0.00 32.29 4.55
289 290 1.067212 CGGTAAATCCTCACCTCGGAG 59.933 57.143 0.00 0.00 33.29 4.63
290 291 2.385803 GGTAAATCCTCACCTCGGAGA 58.614 52.381 6.58 0.00 37.05 3.71
291 292 2.101082 GGTAAATCCTCACCTCGGAGAC 59.899 54.545 6.58 0.00 37.05 3.36
311 312 4.205287 GCTTCCTGCTCTGCTCTG 57.795 61.111 0.00 0.00 38.95 3.35
312 313 2.107903 GCTTCCTGCTCTGCTCTGC 61.108 63.158 0.00 0.00 38.95 4.26
313 314 1.810441 CTTCCTGCTCTGCTCTGCG 60.810 63.158 0.00 0.00 0.00 5.18
314 315 2.223200 CTTCCTGCTCTGCTCTGCGA 62.223 60.000 0.00 0.00 0.00 5.10
315 316 1.611474 TTCCTGCTCTGCTCTGCGAT 61.611 55.000 0.00 0.00 0.00 4.58
316 317 1.883544 CCTGCTCTGCTCTGCGATG 60.884 63.158 0.00 0.00 0.00 3.84
317 318 1.883544 CTGCTCTGCTCTGCGATGG 60.884 63.158 0.00 0.00 0.00 3.51
318 319 2.186384 GCTCTGCTCTGCGATGGT 59.814 61.111 0.00 0.00 0.00 3.55
319 320 1.449246 GCTCTGCTCTGCGATGGTT 60.449 57.895 0.00 0.00 0.00 3.67
320 321 1.703438 GCTCTGCTCTGCGATGGTTG 61.703 60.000 0.00 0.00 0.00 3.77
321 322 0.390866 CTCTGCTCTGCGATGGTTGT 60.391 55.000 0.00 0.00 0.00 3.32
322 323 0.894835 TCTGCTCTGCGATGGTTGTA 59.105 50.000 0.00 0.00 0.00 2.41
323 324 1.002366 CTGCTCTGCGATGGTTGTAC 58.998 55.000 0.00 0.00 0.00 2.90
324 325 0.735978 TGCTCTGCGATGGTTGTACG 60.736 55.000 0.00 0.00 0.00 3.67
325 326 1.421410 GCTCTGCGATGGTTGTACGG 61.421 60.000 0.00 0.00 0.00 4.02
326 327 1.421410 CTCTGCGATGGTTGTACGGC 61.421 60.000 0.00 0.00 0.00 5.68
327 328 1.447838 CTGCGATGGTTGTACGGCT 60.448 57.895 0.00 0.00 0.00 5.52
328 329 1.421410 CTGCGATGGTTGTACGGCTC 61.421 60.000 0.00 0.00 0.00 4.70
329 330 2.514013 GCGATGGTTGTACGGCTCG 61.514 63.158 0.00 0.00 0.00 5.03
330 331 1.138036 CGATGGTTGTACGGCTCGA 59.862 57.895 1.50 0.00 0.00 4.04
331 332 0.457166 CGATGGTTGTACGGCTCGAA 60.457 55.000 1.50 0.00 0.00 3.71
332 333 1.278238 GATGGTTGTACGGCTCGAAG 58.722 55.000 1.50 0.00 0.00 3.79
333 334 0.892755 ATGGTTGTACGGCTCGAAGA 59.107 50.000 1.50 0.00 0.00 2.87
334 335 0.675083 TGGTTGTACGGCTCGAAGAA 59.325 50.000 1.50 0.00 34.09 2.52
335 336 1.336517 TGGTTGTACGGCTCGAAGAAG 60.337 52.381 1.50 0.00 34.09 2.85
336 337 1.347320 GTTGTACGGCTCGAAGAAGG 58.653 55.000 1.50 0.00 34.09 3.46
337 338 0.245539 TTGTACGGCTCGAAGAAGGG 59.754 55.000 1.50 0.00 34.09 3.95
338 339 1.518792 GTACGGCTCGAAGAAGGGC 60.519 63.158 1.50 0.00 34.09 5.19
339 340 2.718073 TACGGCTCGAAGAAGGGCC 61.718 63.158 0.00 0.00 41.31 5.80
340 341 4.840005 CGGCTCGAAGAAGGGCCC 62.840 72.222 16.46 16.46 41.63 5.80
341 342 3.717294 GGCTCGAAGAAGGGCCCA 61.717 66.667 27.56 0.00 39.17 5.36
342 343 2.592308 GCTCGAAGAAGGGCCCAT 59.408 61.111 27.56 13.79 34.09 4.00
343 344 1.524849 GCTCGAAGAAGGGCCCATC 60.525 63.158 27.56 23.47 34.09 3.51
344 345 1.977293 GCTCGAAGAAGGGCCCATCT 61.977 60.000 24.10 24.10 34.09 2.90
345 346 0.179062 CTCGAAGAAGGGCCCATCTG 60.179 60.000 29.67 18.11 34.09 2.90
346 347 1.821332 CGAAGAAGGGCCCATCTGC 60.821 63.158 29.67 26.47 0.00 4.26
356 357 4.851252 CCATCTGCCCCTCCCCCT 62.851 72.222 0.00 0.00 0.00 4.79
357 358 3.174265 CATCTGCCCCTCCCCCTC 61.174 72.222 0.00 0.00 0.00 4.30
358 359 4.523282 ATCTGCCCCTCCCCCTCC 62.523 72.222 0.00 0.00 0.00 4.30
382 383 4.776322 CCCCGCCGTTGATGCTGA 62.776 66.667 0.00 0.00 0.00 4.26
383 384 3.197790 CCCGCCGTTGATGCTGAG 61.198 66.667 0.00 0.00 0.00 3.35
384 385 3.197790 CCGCCGTTGATGCTGAGG 61.198 66.667 0.00 0.00 0.00 3.86
385 386 2.125552 CGCCGTTGATGCTGAGGA 60.126 61.111 0.00 0.00 0.00 3.71
386 387 2.169789 CGCCGTTGATGCTGAGGAG 61.170 63.158 0.00 0.00 0.00 3.69
387 388 1.817099 GCCGTTGATGCTGAGGAGG 60.817 63.158 0.00 0.00 0.00 4.30
388 389 1.900351 CCGTTGATGCTGAGGAGGA 59.100 57.895 0.00 0.00 0.00 3.71
389 390 0.250234 CCGTTGATGCTGAGGAGGAA 59.750 55.000 0.00 0.00 0.00 3.36
390 391 1.649664 CGTTGATGCTGAGGAGGAAG 58.350 55.000 0.00 0.00 0.00 3.46
391 392 1.205655 CGTTGATGCTGAGGAGGAAGA 59.794 52.381 0.00 0.00 0.00 2.87
392 393 2.738000 CGTTGATGCTGAGGAGGAAGAG 60.738 54.545 0.00 0.00 0.00 2.85
393 394 1.493861 TGATGCTGAGGAGGAAGAGG 58.506 55.000 0.00 0.00 0.00 3.69
394 395 1.007600 TGATGCTGAGGAGGAAGAGGA 59.992 52.381 0.00 0.00 0.00 3.71
395 396 1.688197 GATGCTGAGGAGGAAGAGGAG 59.312 57.143 0.00 0.00 0.00 3.69
396 397 0.975040 TGCTGAGGAGGAAGAGGAGC 60.975 60.000 0.00 0.00 0.00 4.70
397 398 2.015227 GCTGAGGAGGAAGAGGAGCG 62.015 65.000 0.00 0.00 0.00 5.03
398 399 1.380515 TGAGGAGGAAGAGGAGCGG 60.381 63.158 0.00 0.00 0.00 5.52
399 400 2.042435 AGGAGGAAGAGGAGCGGG 60.042 66.667 0.00 0.00 0.00 6.13
400 401 2.042843 GGAGGAAGAGGAGCGGGA 60.043 66.667 0.00 0.00 0.00 5.14
401 402 2.131067 GGAGGAAGAGGAGCGGGAG 61.131 68.421 0.00 0.00 0.00 4.30
402 403 2.042435 AGGAAGAGGAGCGGGAGG 60.042 66.667 0.00 0.00 0.00 4.30
403 404 3.157949 GGAAGAGGAGCGGGAGGG 61.158 72.222 0.00 0.00 0.00 4.30
404 405 2.364448 GAAGAGGAGCGGGAGGGT 60.364 66.667 0.00 0.00 0.00 4.34
405 406 1.076192 GAAGAGGAGCGGGAGGGTA 60.076 63.158 0.00 0.00 0.00 3.69
406 407 0.686769 GAAGAGGAGCGGGAGGGTAA 60.687 60.000 0.00 0.00 0.00 2.85
407 408 0.976590 AAGAGGAGCGGGAGGGTAAC 60.977 60.000 0.00 0.00 0.00 2.50
408 409 2.758737 AGGAGCGGGAGGGTAACG 60.759 66.667 0.00 0.00 37.60 3.18
409 410 3.846430 GGAGCGGGAGGGTAACGG 61.846 72.222 0.00 0.00 37.60 4.44
410 411 4.525949 GAGCGGGAGGGTAACGGC 62.526 72.222 0.00 0.00 37.60 5.68
413 414 3.534056 CGGGAGGGTAACGGCGAT 61.534 66.667 16.62 3.59 37.60 4.58
414 415 2.108362 GGGAGGGTAACGGCGATG 59.892 66.667 16.62 0.00 37.60 3.84
415 416 2.728435 GGGAGGGTAACGGCGATGT 61.728 63.158 16.62 0.00 37.60 3.06
416 417 1.520787 GGAGGGTAACGGCGATGTG 60.521 63.158 16.62 0.00 37.60 3.21
417 418 1.520787 GAGGGTAACGGCGATGTGG 60.521 63.158 16.62 0.00 37.60 4.17
418 419 1.952102 GAGGGTAACGGCGATGTGGA 61.952 60.000 16.62 0.00 37.60 4.02
419 420 1.812507 GGGTAACGGCGATGTGGAC 60.813 63.158 16.62 0.00 37.60 4.02
420 421 1.079681 GGTAACGGCGATGTGGACA 60.080 57.895 16.62 0.00 0.00 4.02
421 422 0.461339 GGTAACGGCGATGTGGACAT 60.461 55.000 16.62 0.00 39.70 3.06
422 423 0.928229 GTAACGGCGATGTGGACATC 59.072 55.000 16.62 9.37 46.93 3.06
429 430 3.458872 GATGTGGACATCGCCTGAA 57.541 52.632 4.06 0.00 42.66 3.02
430 431 1.293924 GATGTGGACATCGCCTGAAG 58.706 55.000 4.06 0.00 42.66 3.02
431 432 0.745845 ATGTGGACATCGCCTGAAGC 60.746 55.000 0.00 0.00 38.52 3.86
432 433 1.375908 GTGGACATCGCCTGAAGCA 60.376 57.895 0.00 0.00 44.04 3.91
433 434 1.078918 TGGACATCGCCTGAAGCAG 60.079 57.895 0.00 0.00 44.04 4.24
434 435 2.467826 GGACATCGCCTGAAGCAGC 61.468 63.158 0.00 0.00 44.04 5.25
435 436 1.742880 GACATCGCCTGAAGCAGCA 60.743 57.895 0.00 0.00 44.04 4.41
436 437 1.703438 GACATCGCCTGAAGCAGCAG 61.703 60.000 0.00 0.00 44.04 4.24
437 438 1.449070 CATCGCCTGAAGCAGCAGA 60.449 57.895 7.34 0.00 44.04 4.26
438 439 0.814410 CATCGCCTGAAGCAGCAGAT 60.814 55.000 7.34 0.00 44.04 2.90
439 440 0.532417 ATCGCCTGAAGCAGCAGATC 60.532 55.000 7.34 0.00 44.04 2.75
440 441 2.178890 CGCCTGAAGCAGCAGATCC 61.179 63.158 7.34 0.00 44.04 3.36
441 442 2.178890 GCCTGAAGCAGCAGATCCG 61.179 63.158 7.34 0.00 42.97 4.18
442 443 1.523258 CCTGAAGCAGCAGATCCGG 60.523 63.158 0.00 0.00 38.14 5.14
443 444 1.523258 CTGAAGCAGCAGATCCGGG 60.523 63.158 0.00 0.00 38.14 5.73
444 445 2.899339 GAAGCAGCAGATCCGGGC 60.899 66.667 0.00 0.00 0.00 6.13
445 446 4.845580 AAGCAGCAGATCCGGGCG 62.846 66.667 0.00 0.00 34.54 6.13
481 482 4.760047 CTCCGGGCCGACAACCAG 62.760 72.222 30.79 8.87 0.00 4.00
485 486 4.329545 GGGCCGACAACCAGCAGA 62.330 66.667 0.00 0.00 0.00 4.26
486 487 2.281484 GGCCGACAACCAGCAGAA 60.281 61.111 0.00 0.00 0.00 3.02
487 488 2.328099 GGCCGACAACCAGCAGAAG 61.328 63.158 0.00 0.00 0.00 2.85
488 489 1.301716 GCCGACAACCAGCAGAAGA 60.302 57.895 0.00 0.00 0.00 2.87
489 490 0.884704 GCCGACAACCAGCAGAAGAA 60.885 55.000 0.00 0.00 0.00 2.52
490 491 1.813513 CCGACAACCAGCAGAAGAAT 58.186 50.000 0.00 0.00 0.00 2.40
491 492 2.154462 CCGACAACCAGCAGAAGAATT 58.846 47.619 0.00 0.00 0.00 2.17
492 493 2.554032 CCGACAACCAGCAGAAGAATTT 59.446 45.455 0.00 0.00 0.00 1.82
493 494 3.004734 CCGACAACCAGCAGAAGAATTTT 59.995 43.478 0.00 0.00 0.00 1.82
494 495 3.976942 CGACAACCAGCAGAAGAATTTTG 59.023 43.478 0.00 0.00 0.00 2.44
495 496 4.498009 CGACAACCAGCAGAAGAATTTTGT 60.498 41.667 0.00 0.00 0.00 2.83
496 497 5.343307 ACAACCAGCAGAAGAATTTTGTT 57.657 34.783 0.00 0.00 0.00 2.83
497 498 5.111293 ACAACCAGCAGAAGAATTTTGTTG 58.889 37.500 0.00 0.00 37.25 3.33
498 499 5.111293 CAACCAGCAGAAGAATTTTGTTGT 58.889 37.500 0.00 0.00 0.00 3.32
499 500 4.685924 ACCAGCAGAAGAATTTTGTTGTG 58.314 39.130 0.00 0.00 0.00 3.33
500 501 4.160252 ACCAGCAGAAGAATTTTGTTGTGT 59.840 37.500 0.48 0.00 29.12 3.72
501 502 4.505191 CCAGCAGAAGAATTTTGTTGTGTG 59.495 41.667 0.48 0.00 29.12 3.82
502 503 4.505191 CAGCAGAAGAATTTTGTTGTGTGG 59.495 41.667 0.48 0.00 29.12 4.17
503 504 4.402155 AGCAGAAGAATTTTGTTGTGTGGA 59.598 37.500 0.48 0.00 29.12 4.02
504 505 4.741676 GCAGAAGAATTTTGTTGTGTGGAG 59.258 41.667 0.48 0.00 29.12 3.86
505 506 5.450412 GCAGAAGAATTTTGTTGTGTGGAGA 60.450 40.000 0.48 0.00 29.12 3.71
506 507 6.204359 CAGAAGAATTTTGTTGTGTGGAGAG 58.796 40.000 0.00 0.00 0.00 3.20
507 508 5.888161 AGAAGAATTTTGTTGTGTGGAGAGT 59.112 36.000 0.00 0.00 0.00 3.24
508 509 7.012327 CAGAAGAATTTTGTTGTGTGGAGAGTA 59.988 37.037 0.00 0.00 0.00 2.59
509 510 7.556275 AGAAGAATTTTGTTGTGTGGAGAGTAA 59.444 33.333 0.00 0.00 0.00 2.24
510 511 7.823745 AGAATTTTGTTGTGTGGAGAGTAAT 57.176 32.000 0.00 0.00 0.00 1.89
511 512 8.918202 AGAATTTTGTTGTGTGGAGAGTAATA 57.082 30.769 0.00 0.00 0.00 0.98
512 513 9.349713 AGAATTTTGTTGTGTGGAGAGTAATAA 57.650 29.630 0.00 0.00 0.00 1.40
513 514 9.959749 GAATTTTGTTGTGTGGAGAGTAATAAA 57.040 29.630 0.00 0.00 0.00 1.40
518 519 9.959749 TTGTTGTGTGGAGAGTAATAAAATTTC 57.040 29.630 0.00 0.00 0.00 2.17
519 520 9.349713 TGTTGTGTGGAGAGTAATAAAATTTCT 57.650 29.630 0.00 0.00 0.00 2.52
523 524 9.937175 GTGTGGAGAGTAATAAAATTTCTATGC 57.063 33.333 0.00 0.00 0.00 3.14
524 525 9.905713 TGTGGAGAGTAATAAAATTTCTATGCT 57.094 29.630 0.00 0.00 0.00 3.79
546 547 8.687292 TGCTTATAGATCATGAAAAGAATGCT 57.313 30.769 0.00 0.00 0.00 3.79
547 548 9.128404 TGCTTATAGATCATGAAAAGAATGCTT 57.872 29.630 0.00 0.00 35.37 3.91
548 549 9.962783 GCTTATAGATCATGAAAAGAATGCTTT 57.037 29.630 0.00 0.00 45.95 3.51
552 553 7.951347 AGATCATGAAAAGAATGCTTTAGGT 57.049 32.000 0.00 0.00 43.32 3.08
553 554 7.769220 AGATCATGAAAAGAATGCTTTAGGTG 58.231 34.615 0.00 0.00 43.32 4.00
554 555 5.713025 TCATGAAAAGAATGCTTTAGGTGC 58.287 37.500 0.00 0.00 43.32 5.01
555 556 5.477984 TCATGAAAAGAATGCTTTAGGTGCT 59.522 36.000 0.00 0.00 43.32 4.40
556 557 5.125100 TGAAAAGAATGCTTTAGGTGCTG 57.875 39.130 0.00 0.00 43.32 4.41
557 558 4.022068 TGAAAAGAATGCTTTAGGTGCTGG 60.022 41.667 0.00 0.00 43.32 4.85
558 559 2.887151 AGAATGCTTTAGGTGCTGGT 57.113 45.000 0.00 0.00 0.00 4.00
559 560 3.160679 AGAATGCTTTAGGTGCTGGTT 57.839 42.857 0.00 0.00 0.00 3.67
560 561 4.301072 AGAATGCTTTAGGTGCTGGTTA 57.699 40.909 0.00 0.00 0.00 2.85
561 562 4.860022 AGAATGCTTTAGGTGCTGGTTAT 58.140 39.130 0.00 0.00 0.00 1.89
562 563 6.001449 AGAATGCTTTAGGTGCTGGTTATA 57.999 37.500 0.00 0.00 0.00 0.98
563 564 6.605119 AGAATGCTTTAGGTGCTGGTTATAT 58.395 36.000 0.00 0.00 0.00 0.86
564 565 7.062957 AGAATGCTTTAGGTGCTGGTTATATT 58.937 34.615 0.00 0.00 0.00 1.28
565 566 6.639632 ATGCTTTAGGTGCTGGTTATATTG 57.360 37.500 0.00 0.00 0.00 1.90
566 567 5.505780 TGCTTTAGGTGCTGGTTATATTGT 58.494 37.500 0.00 0.00 0.00 2.71
567 568 5.949354 TGCTTTAGGTGCTGGTTATATTGTT 59.051 36.000 0.00 0.00 0.00 2.83
568 569 6.435904 TGCTTTAGGTGCTGGTTATATTGTTT 59.564 34.615 0.00 0.00 0.00 2.83
569 570 7.612244 TGCTTTAGGTGCTGGTTATATTGTTTA 59.388 33.333 0.00 0.00 0.00 2.01
570 571 8.463607 GCTTTAGGTGCTGGTTATATTGTTTAA 58.536 33.333 0.00 0.00 0.00 1.52
676 677 3.335534 GTGCGCACCGACTCGTTT 61.336 61.111 30.12 0.00 0.00 3.60
739 740 0.840722 CCTTACAGGTGGGACCAGGT 60.841 60.000 0.00 0.00 41.95 4.00
1113 1116 3.064207 CGTTGATCGAAGGGTTTCTCAA 58.936 45.455 0.00 0.00 42.86 3.02
1151 1154 0.935831 CGTCCGTTCTACGTGTGCAA 60.936 55.000 0.00 0.00 40.58 4.08
1179 1182 1.318576 GGGTAAGAATCGGGGCAATG 58.681 55.000 0.00 0.00 0.00 2.82
2038 2088 6.016943 CCAAAATGTCATGAAAAATGTGCCTT 60.017 34.615 0.00 0.00 0.00 4.35
2210 2260 3.427573 GGTTTGTGGTGTTTAGGGCTAT 58.572 45.455 0.00 0.00 0.00 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 0.942252 CGCACATAGCATGCACTGAT 59.058 50.000 21.98 4.49 46.13 2.90
84 85 1.221466 ACAACGACAGTGACATGCCG 61.221 55.000 0.00 0.00 31.85 5.69
85 86 1.726791 CTACAACGACAGTGACATGCC 59.273 52.381 0.00 0.00 0.00 4.40
106 107 1.526575 AAATGGTGCGGCTCCTTGTG 61.527 55.000 20.53 0.00 0.00 3.33
128 129 2.618302 GCATGATGGATGGAGGGATCTG 60.618 54.545 0.00 0.00 31.99 2.90
155 156 7.017319 TGGATATGATTCAGAGCATCAGATT 57.983 36.000 0.00 0.00 33.64 2.40
156 157 6.622427 TGGATATGATTCAGAGCATCAGAT 57.378 37.500 0.00 0.00 35.69 2.90
157 158 6.212791 TCATGGATATGATTCAGAGCATCAGA 59.787 38.462 0.00 0.00 38.37 3.27
158 159 6.314152 GTCATGGATATGATTCAGAGCATCAG 59.686 42.308 0.00 0.00 44.62 2.90
159 160 6.171213 GTCATGGATATGATTCAGAGCATCA 58.829 40.000 0.00 0.00 44.62 3.07
160 161 5.585445 GGTCATGGATATGATTCAGAGCATC 59.415 44.000 0.00 0.00 44.62 3.91
161 162 5.013808 TGGTCATGGATATGATTCAGAGCAT 59.986 40.000 0.00 0.00 44.62 3.79
162 163 4.348754 TGGTCATGGATATGATTCAGAGCA 59.651 41.667 0.00 0.00 44.62 4.26
163 164 4.903054 TGGTCATGGATATGATTCAGAGC 58.097 43.478 0.00 0.00 44.62 4.09
164 165 6.356186 TCTGGTCATGGATATGATTCAGAG 57.644 41.667 15.58 0.00 44.62 3.35
166 167 5.354513 GCATCTGGTCATGGATATGATTCAG 59.645 44.000 12.89 12.89 44.62 3.02
167 168 5.221966 TGCATCTGGTCATGGATATGATTCA 60.222 40.000 0.00 0.00 44.62 2.57
168 169 5.250982 TGCATCTGGTCATGGATATGATTC 58.749 41.667 0.00 0.00 44.62 2.52
169 170 5.251182 TGCATCTGGTCATGGATATGATT 57.749 39.130 0.00 0.00 44.62 2.57
170 171 4.921644 TGCATCTGGTCATGGATATGAT 57.078 40.909 0.00 0.00 44.62 2.45
171 172 4.921644 ATGCATCTGGTCATGGATATGA 57.078 40.909 0.00 0.00 40.92 2.15
172 173 5.977489 AAATGCATCTGGTCATGGATATG 57.023 39.130 0.00 0.00 33.98 1.78
173 174 7.176165 CAGTTAAATGCATCTGGTCATGGATAT 59.824 37.037 0.00 0.00 33.98 1.63
174 175 6.487668 CAGTTAAATGCATCTGGTCATGGATA 59.512 38.462 0.00 0.00 33.98 2.59
175 176 5.301045 CAGTTAAATGCATCTGGTCATGGAT 59.699 40.000 0.00 0.00 36.45 3.41
176 177 4.641541 CAGTTAAATGCATCTGGTCATGGA 59.358 41.667 0.00 0.00 0.00 3.41
177 178 4.641541 TCAGTTAAATGCATCTGGTCATGG 59.358 41.667 11.89 0.00 0.00 3.66
178 179 5.823209 TCAGTTAAATGCATCTGGTCATG 57.177 39.130 11.89 0.00 0.00 3.07
179 180 5.359009 CCTTCAGTTAAATGCATCTGGTCAT 59.641 40.000 11.89 0.00 0.00 3.06
180 181 4.701651 CCTTCAGTTAAATGCATCTGGTCA 59.298 41.667 11.89 0.00 0.00 4.02
181 182 4.702131 ACCTTCAGTTAAATGCATCTGGTC 59.298 41.667 11.89 0.00 0.00 4.02
182 183 4.460382 CACCTTCAGTTAAATGCATCTGGT 59.540 41.667 11.89 1.72 0.00 4.00
183 184 4.701651 TCACCTTCAGTTAAATGCATCTGG 59.298 41.667 11.89 1.19 0.00 3.86
184 185 5.163683 CCTCACCTTCAGTTAAATGCATCTG 60.164 44.000 0.00 2.91 0.00 2.90
185 186 4.946157 CCTCACCTTCAGTTAAATGCATCT 59.054 41.667 0.00 0.00 0.00 2.90
186 187 4.702131 ACCTCACCTTCAGTTAAATGCATC 59.298 41.667 0.00 0.00 0.00 3.91
187 188 4.460382 CACCTCACCTTCAGTTAAATGCAT 59.540 41.667 0.00 0.00 0.00 3.96
188 189 3.820467 CACCTCACCTTCAGTTAAATGCA 59.180 43.478 0.00 0.00 0.00 3.96
189 190 4.072131 TCACCTCACCTTCAGTTAAATGC 58.928 43.478 0.00 0.00 0.00 3.56
190 191 5.551233 TCTCACCTCACCTTCAGTTAAATG 58.449 41.667 0.00 0.00 0.00 2.32
191 192 5.825593 TCTCACCTCACCTTCAGTTAAAT 57.174 39.130 0.00 0.00 0.00 1.40
192 193 5.365605 TCTTCTCACCTCACCTTCAGTTAAA 59.634 40.000 0.00 0.00 0.00 1.52
193 194 4.899457 TCTTCTCACCTCACCTTCAGTTAA 59.101 41.667 0.00 0.00 0.00 2.01
194 195 4.480115 TCTTCTCACCTCACCTTCAGTTA 58.520 43.478 0.00 0.00 0.00 2.24
195 196 3.309296 TCTTCTCACCTCACCTTCAGTT 58.691 45.455 0.00 0.00 0.00 3.16
196 197 2.896685 CTCTTCTCACCTCACCTTCAGT 59.103 50.000 0.00 0.00 0.00 3.41
197 198 2.353605 GCTCTTCTCACCTCACCTTCAG 60.354 54.545 0.00 0.00 0.00 3.02
198 199 1.620819 GCTCTTCTCACCTCACCTTCA 59.379 52.381 0.00 0.00 0.00 3.02
199 200 1.620819 TGCTCTTCTCACCTCACCTTC 59.379 52.381 0.00 0.00 0.00 3.46
200 201 1.622811 CTGCTCTTCTCACCTCACCTT 59.377 52.381 0.00 0.00 0.00 3.50
201 202 1.203112 TCTGCTCTTCTCACCTCACCT 60.203 52.381 0.00 0.00 0.00 4.00
202 203 1.261480 TCTGCTCTTCTCACCTCACC 58.739 55.000 0.00 0.00 0.00 4.02
203 204 3.608316 ATTCTGCTCTTCTCACCTCAC 57.392 47.619 0.00 0.00 0.00 3.51
204 205 4.089361 TGTATTCTGCTCTTCTCACCTCA 58.911 43.478 0.00 0.00 0.00 3.86
205 206 4.400884 TCTGTATTCTGCTCTTCTCACCTC 59.599 45.833 0.00 0.00 0.00 3.85
206 207 4.159506 GTCTGTATTCTGCTCTTCTCACCT 59.840 45.833 0.00 0.00 0.00 4.00
207 208 4.159506 AGTCTGTATTCTGCTCTTCTCACC 59.840 45.833 0.00 0.00 0.00 4.02
208 209 5.323371 AGTCTGTATTCTGCTCTTCTCAC 57.677 43.478 0.00 0.00 0.00 3.51
209 210 5.946377 TGTAGTCTGTATTCTGCTCTTCTCA 59.054 40.000 0.00 0.00 0.00 3.27
210 211 6.317642 TCTGTAGTCTGTATTCTGCTCTTCTC 59.682 42.308 0.00 0.00 0.00 2.87
211 212 6.184068 TCTGTAGTCTGTATTCTGCTCTTCT 58.816 40.000 0.00 0.00 0.00 2.85
212 213 6.443934 TCTGTAGTCTGTATTCTGCTCTTC 57.556 41.667 0.00 0.00 0.00 2.87
213 214 5.359576 CCTCTGTAGTCTGTATTCTGCTCTT 59.640 44.000 0.00 0.00 0.00 2.85
214 215 4.887071 CCTCTGTAGTCTGTATTCTGCTCT 59.113 45.833 0.00 0.00 0.00 4.09
215 216 4.884744 TCCTCTGTAGTCTGTATTCTGCTC 59.115 45.833 0.00 0.00 0.00 4.26
216 217 4.861196 TCCTCTGTAGTCTGTATTCTGCT 58.139 43.478 0.00 0.00 0.00 4.24
217 218 5.300539 TCATCCTCTGTAGTCTGTATTCTGC 59.699 44.000 0.00 0.00 0.00 4.26
218 219 6.951062 TCATCCTCTGTAGTCTGTATTCTG 57.049 41.667 0.00 0.00 0.00 3.02
219 220 7.122715 AGTTCATCCTCTGTAGTCTGTATTCT 58.877 38.462 0.00 0.00 0.00 2.40
220 221 7.341445 AGTTCATCCTCTGTAGTCTGTATTC 57.659 40.000 0.00 0.00 0.00 1.75
221 222 8.275758 TCTAGTTCATCCTCTGTAGTCTGTATT 58.724 37.037 0.00 0.00 0.00 1.89
222 223 7.807198 TCTAGTTCATCCTCTGTAGTCTGTAT 58.193 38.462 0.00 0.00 0.00 2.29
223 224 7.196637 TCTAGTTCATCCTCTGTAGTCTGTA 57.803 40.000 0.00 0.00 0.00 2.74
224 225 6.068461 TCTAGTTCATCCTCTGTAGTCTGT 57.932 41.667 0.00 0.00 0.00 3.41
225 226 6.514870 GCATCTAGTTCATCCTCTGTAGTCTG 60.515 46.154 0.00 0.00 0.00 3.51
226 227 5.534654 GCATCTAGTTCATCCTCTGTAGTCT 59.465 44.000 0.00 0.00 0.00 3.24
227 228 5.300539 TGCATCTAGTTCATCCTCTGTAGTC 59.699 44.000 0.00 0.00 0.00 2.59
228 229 5.204292 TGCATCTAGTTCATCCTCTGTAGT 58.796 41.667 0.00 0.00 0.00 2.73
229 230 5.781210 TGCATCTAGTTCATCCTCTGTAG 57.219 43.478 0.00 0.00 0.00 2.74
230 231 6.737720 AATGCATCTAGTTCATCCTCTGTA 57.262 37.500 0.00 0.00 0.00 2.74
231 232 5.627182 AATGCATCTAGTTCATCCTCTGT 57.373 39.130 0.00 0.00 0.00 3.41
232 233 7.714377 AGTTAAATGCATCTAGTTCATCCTCTG 59.286 37.037 0.00 0.00 0.00 3.35
233 234 7.800092 AGTTAAATGCATCTAGTTCATCCTCT 58.200 34.615 0.00 0.00 0.00 3.69
234 235 8.983724 GTAGTTAAATGCATCTAGTTCATCCTC 58.016 37.037 0.00 0.00 0.00 3.71
235 236 8.486210 TGTAGTTAAATGCATCTAGTTCATCCT 58.514 33.333 0.00 0.00 0.00 3.24
236 237 8.662781 TGTAGTTAAATGCATCTAGTTCATCC 57.337 34.615 0.00 0.00 0.00 3.51
237 238 8.279103 GCTGTAGTTAAATGCATCTAGTTCATC 58.721 37.037 0.00 0.00 0.00 2.92
238 239 7.042456 CGCTGTAGTTAAATGCATCTAGTTCAT 60.042 37.037 0.00 0.00 0.00 2.57
239 240 6.255670 CGCTGTAGTTAAATGCATCTAGTTCA 59.744 38.462 0.00 0.00 0.00 3.18
240 241 6.292381 CCGCTGTAGTTAAATGCATCTAGTTC 60.292 42.308 0.00 0.00 0.00 3.01
241 242 5.523916 CCGCTGTAGTTAAATGCATCTAGTT 59.476 40.000 0.00 0.00 0.00 2.24
242 243 5.050490 CCGCTGTAGTTAAATGCATCTAGT 58.950 41.667 0.00 0.00 0.00 2.57
243 244 4.084328 GCCGCTGTAGTTAAATGCATCTAG 60.084 45.833 0.00 0.00 0.00 2.43
244 245 3.807622 GCCGCTGTAGTTAAATGCATCTA 59.192 43.478 0.00 0.00 0.00 1.98
245 246 2.614057 GCCGCTGTAGTTAAATGCATCT 59.386 45.455 0.00 0.00 0.00 2.90
246 247 2.614057 AGCCGCTGTAGTTAAATGCATC 59.386 45.455 0.00 0.00 0.00 3.91
247 248 2.355756 CAGCCGCTGTAGTTAAATGCAT 59.644 45.455 12.54 0.00 0.00 3.96
248 249 1.737236 CAGCCGCTGTAGTTAAATGCA 59.263 47.619 12.54 0.00 0.00 3.96
249 250 1.531883 GCAGCCGCTGTAGTTAAATGC 60.532 52.381 21.29 0.18 33.43 3.56
250 251 1.267532 CGCAGCCGCTGTAGTTAAATG 60.268 52.381 21.29 0.00 35.30 2.32
251 252 1.006832 CGCAGCCGCTGTAGTTAAAT 58.993 50.000 21.29 0.00 35.30 1.40
252 253 1.017177 CCGCAGCCGCTGTAGTTAAA 61.017 55.000 21.29 0.00 35.30 1.52
253 254 1.447140 CCGCAGCCGCTGTAGTTAA 60.447 57.895 21.29 0.00 35.30 2.01
254 255 1.314534 TACCGCAGCCGCTGTAGTTA 61.315 55.000 21.29 6.69 36.85 2.24
255 256 2.162338 TTACCGCAGCCGCTGTAGTT 62.162 55.000 21.29 7.62 38.78 2.24
256 257 2.162338 TTTACCGCAGCCGCTGTAGT 62.162 55.000 21.29 19.30 38.78 2.73
257 258 0.810031 ATTTACCGCAGCCGCTGTAG 60.810 55.000 21.29 14.86 38.78 2.74
258 259 0.808453 GATTTACCGCAGCCGCTGTA 60.808 55.000 21.29 3.76 36.85 2.74
259 260 2.046314 ATTTACCGCAGCCGCTGT 60.046 55.556 21.29 4.77 39.17 4.40
260 261 2.709475 GATTTACCGCAGCCGCTG 59.291 61.111 16.47 16.47 35.30 5.18
261 262 2.513897 GGATTTACCGCAGCCGCT 60.514 61.111 0.00 0.00 35.30 5.52
262 263 2.513897 AGGATTTACCGCAGCCGC 60.514 61.111 0.00 0.00 44.74 6.53
263 264 1.153449 TGAGGATTTACCGCAGCCG 60.153 57.895 0.00 0.00 43.18 5.52
264 265 4.954933 TGAGGATTTACCGCAGCC 57.045 55.556 0.00 0.00 43.18 4.85
267 268 0.174845 CGAGGTGAGGATTTACCGCA 59.825 55.000 0.00 0.00 45.68 5.69
268 269 0.529992 CCGAGGTGAGGATTTACCGC 60.530 60.000 0.00 0.00 44.74 5.68
269 270 1.067212 CTCCGAGGTGAGGATTTACCG 59.933 57.143 0.00 0.00 44.74 4.02
270 271 2.101082 GTCTCCGAGGTGAGGATTTACC 59.899 54.545 0.00 0.00 37.13 2.85
271 272 2.223525 CGTCTCCGAGGTGAGGATTTAC 60.224 54.545 7.82 0.00 37.13 2.01
272 273 2.022195 CGTCTCCGAGGTGAGGATTTA 58.978 52.381 7.82 0.00 37.13 1.40
273 274 0.818296 CGTCTCCGAGGTGAGGATTT 59.182 55.000 7.82 0.00 37.13 2.17
274 275 0.034380 TCGTCTCCGAGGTGAGGATT 60.034 55.000 11.17 0.00 38.40 3.01
275 276 1.608154 TCGTCTCCGAGGTGAGGAT 59.392 57.895 11.17 0.00 38.40 3.24
276 277 3.075186 TCGTCTCCGAGGTGAGGA 58.925 61.111 11.17 11.17 38.40 3.71
284 285 2.701780 GCAGGAAGCTCGTCTCCGA 61.702 63.158 0.00 0.00 41.73 4.55
285 286 2.202676 GCAGGAAGCTCGTCTCCG 60.203 66.667 0.00 0.00 41.15 4.63
294 295 2.107903 GCAGAGCAGAGCAGGAAGC 61.108 63.158 0.00 0.00 46.19 3.86
295 296 1.810441 CGCAGAGCAGAGCAGGAAG 60.810 63.158 0.00 0.00 0.00 3.46
296 297 1.611474 ATCGCAGAGCAGAGCAGGAA 61.611 55.000 0.00 0.00 43.63 3.36
297 298 2.056815 ATCGCAGAGCAGAGCAGGA 61.057 57.895 0.00 0.00 43.63 3.86
298 299 1.883544 CATCGCAGAGCAGAGCAGG 60.884 63.158 0.00 0.00 43.63 4.85
299 300 1.883544 CCATCGCAGAGCAGAGCAG 60.884 63.158 0.00 0.00 43.63 4.24
300 301 2.176314 AACCATCGCAGAGCAGAGCA 62.176 55.000 0.00 0.00 43.63 4.26
301 302 1.449246 AACCATCGCAGAGCAGAGC 60.449 57.895 0.00 0.00 43.63 4.09
302 303 0.390866 ACAACCATCGCAGAGCAGAG 60.391 55.000 0.00 0.00 43.63 3.35
303 304 0.894835 TACAACCATCGCAGAGCAGA 59.105 50.000 0.00 0.00 43.63 4.26
304 305 1.002366 GTACAACCATCGCAGAGCAG 58.998 55.000 0.00 0.00 43.63 4.24
305 306 0.735978 CGTACAACCATCGCAGAGCA 60.736 55.000 0.00 0.00 43.63 4.26
306 307 1.421410 CCGTACAACCATCGCAGAGC 61.421 60.000 0.00 0.00 43.63 4.09
307 308 1.421410 GCCGTACAACCATCGCAGAG 61.421 60.000 0.00 0.00 43.63 3.35
308 309 1.447140 GCCGTACAACCATCGCAGA 60.447 57.895 0.00 0.00 45.75 4.26
309 310 1.421410 GAGCCGTACAACCATCGCAG 61.421 60.000 0.00 0.00 0.00 5.18
310 311 1.447140 GAGCCGTACAACCATCGCA 60.447 57.895 0.00 0.00 0.00 5.10
311 312 2.514013 CGAGCCGTACAACCATCGC 61.514 63.158 0.00 0.00 0.00 4.58
312 313 0.457166 TTCGAGCCGTACAACCATCG 60.457 55.000 0.00 0.00 0.00 3.84
313 314 1.135199 TCTTCGAGCCGTACAACCATC 60.135 52.381 0.00 0.00 0.00 3.51
314 315 0.892755 TCTTCGAGCCGTACAACCAT 59.107 50.000 0.00 0.00 0.00 3.55
315 316 0.675083 TTCTTCGAGCCGTACAACCA 59.325 50.000 0.00 0.00 0.00 3.67
316 317 1.347320 CTTCTTCGAGCCGTACAACC 58.653 55.000 0.00 0.00 0.00 3.77
317 318 1.347320 CCTTCTTCGAGCCGTACAAC 58.653 55.000 0.00 0.00 0.00 3.32
318 319 0.245539 CCCTTCTTCGAGCCGTACAA 59.754 55.000 0.00 0.00 0.00 2.41
319 320 1.888018 CCCTTCTTCGAGCCGTACA 59.112 57.895 0.00 0.00 0.00 2.90
320 321 1.518792 GCCCTTCTTCGAGCCGTAC 60.519 63.158 0.00 0.00 0.00 3.67
321 322 2.718073 GGCCCTTCTTCGAGCCGTA 61.718 63.158 0.00 0.00 35.30 4.02
322 323 4.083862 GGCCCTTCTTCGAGCCGT 62.084 66.667 0.00 0.00 35.30 5.68
323 324 4.840005 GGGCCCTTCTTCGAGCCG 62.840 72.222 17.04 0.00 46.75 5.52
324 325 2.949705 GATGGGCCCTTCTTCGAGCC 62.950 65.000 26.72 2.61 44.99 4.70
325 326 1.524849 GATGGGCCCTTCTTCGAGC 60.525 63.158 26.72 2.78 0.00 5.03
326 327 0.179062 CAGATGGGCCCTTCTTCGAG 60.179 60.000 32.48 19.82 0.00 4.04
327 328 1.907739 CAGATGGGCCCTTCTTCGA 59.092 57.895 32.48 7.89 0.00 3.71
328 329 1.821332 GCAGATGGGCCCTTCTTCG 60.821 63.158 32.48 24.02 0.00 3.79
329 330 4.249513 GCAGATGGGCCCTTCTTC 57.750 61.111 32.48 25.80 0.00 2.87
339 340 4.851252 AGGGGGAGGGGCAGATGG 62.851 72.222 0.00 0.00 0.00 3.51
340 341 3.174265 GAGGGGGAGGGGCAGATG 61.174 72.222 0.00 0.00 0.00 2.90
341 342 4.523282 GGAGGGGGAGGGGCAGAT 62.523 72.222 0.00 0.00 0.00 2.90
365 366 4.776322 TCAGCATCAACGGCGGGG 62.776 66.667 13.24 2.15 36.08 5.73
366 367 3.197790 CTCAGCATCAACGGCGGG 61.198 66.667 13.24 2.59 36.08 6.13
367 368 3.197790 CCTCAGCATCAACGGCGG 61.198 66.667 13.24 0.00 36.08 6.13
368 369 2.125552 TCCTCAGCATCAACGGCG 60.126 61.111 4.80 4.80 36.08 6.46
369 370 1.817099 CCTCCTCAGCATCAACGGC 60.817 63.158 0.00 0.00 0.00 5.68
370 371 0.250234 TTCCTCCTCAGCATCAACGG 59.750 55.000 0.00 0.00 0.00 4.44
371 372 1.205655 TCTTCCTCCTCAGCATCAACG 59.794 52.381 0.00 0.00 0.00 4.10
372 373 2.419851 CCTCTTCCTCCTCAGCATCAAC 60.420 54.545 0.00 0.00 0.00 3.18
373 374 1.836166 CCTCTTCCTCCTCAGCATCAA 59.164 52.381 0.00 0.00 0.00 2.57
374 375 1.007600 TCCTCTTCCTCCTCAGCATCA 59.992 52.381 0.00 0.00 0.00 3.07
375 376 1.688197 CTCCTCTTCCTCCTCAGCATC 59.312 57.143 0.00 0.00 0.00 3.91
376 377 1.792115 CTCCTCTTCCTCCTCAGCAT 58.208 55.000 0.00 0.00 0.00 3.79
377 378 0.975040 GCTCCTCTTCCTCCTCAGCA 60.975 60.000 0.00 0.00 0.00 4.41
378 379 1.822615 GCTCCTCTTCCTCCTCAGC 59.177 63.158 0.00 0.00 0.00 4.26
379 380 1.391157 CCGCTCCTCTTCCTCCTCAG 61.391 65.000 0.00 0.00 0.00 3.35
380 381 1.380515 CCGCTCCTCTTCCTCCTCA 60.381 63.158 0.00 0.00 0.00 3.86
381 382 2.131067 CCCGCTCCTCTTCCTCCTC 61.131 68.421 0.00 0.00 0.00 3.71
382 383 2.042435 CCCGCTCCTCTTCCTCCT 60.042 66.667 0.00 0.00 0.00 3.69
383 384 2.042843 TCCCGCTCCTCTTCCTCC 60.043 66.667 0.00 0.00 0.00 4.30
384 385 2.131067 CCTCCCGCTCCTCTTCCTC 61.131 68.421 0.00 0.00 0.00 3.71
385 386 2.042435 CCTCCCGCTCCTCTTCCT 60.042 66.667 0.00 0.00 0.00 3.36
386 387 2.584873 TACCCTCCCGCTCCTCTTCC 62.585 65.000 0.00 0.00 0.00 3.46
387 388 0.686769 TTACCCTCCCGCTCCTCTTC 60.687 60.000 0.00 0.00 0.00 2.87
388 389 0.976590 GTTACCCTCCCGCTCCTCTT 60.977 60.000 0.00 0.00 0.00 2.85
389 390 1.381463 GTTACCCTCCCGCTCCTCT 60.381 63.158 0.00 0.00 0.00 3.69
390 391 2.783288 CGTTACCCTCCCGCTCCTC 61.783 68.421 0.00 0.00 0.00 3.71
391 392 2.758737 CGTTACCCTCCCGCTCCT 60.759 66.667 0.00 0.00 0.00 3.69
392 393 3.846430 CCGTTACCCTCCCGCTCC 61.846 72.222 0.00 0.00 0.00 4.70
393 394 4.525949 GCCGTTACCCTCCCGCTC 62.526 72.222 0.00 0.00 0.00 5.03
396 397 3.534056 ATCGCCGTTACCCTCCCG 61.534 66.667 0.00 0.00 0.00 5.14
397 398 2.108362 CATCGCCGTTACCCTCCC 59.892 66.667 0.00 0.00 0.00 4.30
398 399 1.520787 CACATCGCCGTTACCCTCC 60.521 63.158 0.00 0.00 0.00 4.30
399 400 1.520787 CCACATCGCCGTTACCCTC 60.521 63.158 0.00 0.00 0.00 4.30
400 401 1.985662 TCCACATCGCCGTTACCCT 60.986 57.895 0.00 0.00 0.00 4.34
401 402 1.812507 GTCCACATCGCCGTTACCC 60.813 63.158 0.00 0.00 0.00 3.69
402 403 0.461339 ATGTCCACATCGCCGTTACC 60.461 55.000 0.00 0.00 28.78 2.85
403 404 0.928229 GATGTCCACATCGCCGTTAC 59.072 55.000 3.96 0.00 42.66 2.50
404 405 3.355816 GATGTCCACATCGCCGTTA 57.644 52.632 3.96 0.00 42.66 3.18
405 406 4.201951 GATGTCCACATCGCCGTT 57.798 55.556 3.96 0.00 42.66 4.44
411 412 1.293924 CTTCAGGCGATGTCCACATC 58.706 55.000 9.33 9.33 46.93 3.06
412 413 0.745845 GCTTCAGGCGATGTCCACAT 60.746 55.000 0.00 0.00 39.70 3.21
413 414 1.375908 GCTTCAGGCGATGTCCACA 60.376 57.895 0.00 0.00 0.00 4.17
414 415 1.364626 CTGCTTCAGGCGATGTCCAC 61.365 60.000 0.00 0.00 45.43 4.02
415 416 1.078918 CTGCTTCAGGCGATGTCCA 60.079 57.895 0.00 0.00 45.43 4.02
416 417 2.467826 GCTGCTTCAGGCGATGTCC 61.468 63.158 0.00 0.00 45.43 4.02
417 418 1.703438 CTGCTGCTTCAGGCGATGTC 61.703 60.000 0.00 0.00 45.43 3.06
418 419 1.744368 CTGCTGCTTCAGGCGATGT 60.744 57.895 0.00 0.00 45.43 3.06
419 420 0.814410 ATCTGCTGCTTCAGGCGATG 60.814 55.000 0.00 0.00 45.43 3.84
420 421 0.532417 GATCTGCTGCTTCAGGCGAT 60.532 55.000 0.00 0.00 45.43 4.58
421 422 1.153489 GATCTGCTGCTTCAGGCGA 60.153 57.895 0.00 0.00 45.43 5.54
422 423 2.178890 GGATCTGCTGCTTCAGGCG 61.179 63.158 0.00 0.00 45.43 5.52
423 424 2.178890 CGGATCTGCTGCTTCAGGC 61.179 63.158 0.00 0.00 42.22 4.85
424 425 1.523258 CCGGATCTGCTGCTTCAGG 60.523 63.158 0.00 2.17 34.91 3.86
425 426 1.523258 CCCGGATCTGCTGCTTCAG 60.523 63.158 0.73 0.21 35.46 3.02
426 427 2.586245 CCCGGATCTGCTGCTTCA 59.414 61.111 0.73 0.00 0.00 3.02
427 428 2.899339 GCCCGGATCTGCTGCTTC 60.899 66.667 0.73 0.00 0.00 3.86
428 429 4.845580 CGCCCGGATCTGCTGCTT 62.846 66.667 0.73 0.00 0.00 3.91
464 465 4.760047 CTGGTTGTCGGCCCGGAG 62.760 72.222 0.73 0.00 0.00 4.63
468 469 3.842925 TTCTGCTGGTTGTCGGCCC 62.843 63.158 0.00 0.00 46.96 5.80
469 470 2.281484 TTCTGCTGGTTGTCGGCC 60.281 61.111 0.00 0.00 46.96 6.13
471 472 1.813513 ATTCTTCTGCTGGTTGTCGG 58.186 50.000 0.00 0.00 0.00 4.79
472 473 3.904136 AAATTCTTCTGCTGGTTGTCG 57.096 42.857 0.00 0.00 0.00 4.35
473 474 4.936891 ACAAAATTCTTCTGCTGGTTGTC 58.063 39.130 0.00 0.00 0.00 3.18
474 475 5.111293 CAACAAAATTCTTCTGCTGGTTGT 58.889 37.500 0.00 0.00 0.00 3.32
475 476 5.005971 CACAACAAAATTCTTCTGCTGGTTG 59.994 40.000 0.00 0.00 39.07 3.77
476 477 5.111293 CACAACAAAATTCTTCTGCTGGTT 58.889 37.500 0.00 0.00 0.00 3.67
477 478 4.160252 ACACAACAAAATTCTTCTGCTGGT 59.840 37.500 0.00 0.00 0.00 4.00
478 479 4.505191 CACACAACAAAATTCTTCTGCTGG 59.495 41.667 0.00 0.00 0.00 4.85
479 480 4.505191 CCACACAACAAAATTCTTCTGCTG 59.495 41.667 0.00 0.00 0.00 4.41
480 481 4.402155 TCCACACAACAAAATTCTTCTGCT 59.598 37.500 0.00 0.00 0.00 4.24
481 482 4.681744 TCCACACAACAAAATTCTTCTGC 58.318 39.130 0.00 0.00 0.00 4.26
482 483 6.135290 TCTCCACACAACAAAATTCTTCTG 57.865 37.500 0.00 0.00 0.00 3.02
483 484 5.888161 ACTCTCCACACAACAAAATTCTTCT 59.112 36.000 0.00 0.00 0.00 2.85
484 485 6.136541 ACTCTCCACACAACAAAATTCTTC 57.863 37.500 0.00 0.00 0.00 2.87
485 486 7.639113 TTACTCTCCACACAACAAAATTCTT 57.361 32.000 0.00 0.00 0.00 2.52
486 487 7.823745 ATTACTCTCCACACAACAAAATTCT 57.176 32.000 0.00 0.00 0.00 2.40
487 488 9.959749 TTTATTACTCTCCACACAACAAAATTC 57.040 29.630 0.00 0.00 0.00 2.17
492 493 9.959749 GAAATTTTATTACTCTCCACACAACAA 57.040 29.630 0.00 0.00 0.00 2.83
493 494 9.349713 AGAAATTTTATTACTCTCCACACAACA 57.650 29.630 0.00 0.00 0.00 3.33
497 498 9.937175 GCATAGAAATTTTATTACTCTCCACAC 57.063 33.333 0.00 0.00 0.00 3.82
498 499 9.905713 AGCATAGAAATTTTATTACTCTCCACA 57.094 29.630 0.00 0.00 0.00 4.17
520 521 9.298250 AGCATTCTTTTCATGATCTATAAGCAT 57.702 29.630 0.00 0.00 0.00 3.79
521 522 8.687292 AGCATTCTTTTCATGATCTATAAGCA 57.313 30.769 0.00 0.00 0.00 3.91
522 523 9.962783 AAAGCATTCTTTTCATGATCTATAAGC 57.037 29.630 0.00 0.00 39.36 3.09
526 527 9.638176 ACCTAAAGCATTCTTTTCATGATCTAT 57.362 29.630 0.00 0.00 42.21 1.98
527 528 8.896744 CACCTAAAGCATTCTTTTCATGATCTA 58.103 33.333 0.00 0.00 42.21 1.98
528 529 7.630082 GCACCTAAAGCATTCTTTTCATGATCT 60.630 37.037 0.00 0.00 42.21 2.75
529 530 6.474751 GCACCTAAAGCATTCTTTTCATGATC 59.525 38.462 0.00 0.00 42.21 2.92
530 531 6.154021 AGCACCTAAAGCATTCTTTTCATGAT 59.846 34.615 0.00 0.00 42.21 2.45
531 532 5.477984 AGCACCTAAAGCATTCTTTTCATGA 59.522 36.000 0.00 0.00 42.21 3.07
532 533 5.575606 CAGCACCTAAAGCATTCTTTTCATG 59.424 40.000 0.00 0.00 42.21 3.07
533 534 5.337009 CCAGCACCTAAAGCATTCTTTTCAT 60.337 40.000 0.00 0.00 42.21 2.57
534 535 4.022068 CCAGCACCTAAAGCATTCTTTTCA 60.022 41.667 0.00 0.00 42.21 2.69
535 536 4.021981 ACCAGCACCTAAAGCATTCTTTTC 60.022 41.667 0.00 0.00 42.21 2.29
536 537 3.897505 ACCAGCACCTAAAGCATTCTTTT 59.102 39.130 0.00 0.00 42.21 2.27
537 538 3.500343 ACCAGCACCTAAAGCATTCTTT 58.500 40.909 0.00 0.00 44.22 2.52
538 539 3.160679 ACCAGCACCTAAAGCATTCTT 57.839 42.857 0.00 0.00 0.00 2.52
539 540 2.887151 ACCAGCACCTAAAGCATTCT 57.113 45.000 0.00 0.00 0.00 2.40
540 541 6.884280 ATATAACCAGCACCTAAAGCATTC 57.116 37.500 0.00 0.00 0.00 2.67
541 542 6.607198 ACAATATAACCAGCACCTAAAGCATT 59.393 34.615 0.00 0.00 0.00 3.56
542 543 6.129179 ACAATATAACCAGCACCTAAAGCAT 58.871 36.000 0.00 0.00 0.00 3.79
543 544 5.505780 ACAATATAACCAGCACCTAAAGCA 58.494 37.500 0.00 0.00 0.00 3.91
544 545 6.451064 AACAATATAACCAGCACCTAAAGC 57.549 37.500 0.00 0.00 0.00 3.51
547 548 8.908903 CCATTAAACAATATAACCAGCACCTAA 58.091 33.333 0.00 0.00 0.00 2.69
548 549 7.504238 CCCATTAAACAATATAACCAGCACCTA 59.496 37.037 0.00 0.00 0.00 3.08
549 550 6.323739 CCCATTAAACAATATAACCAGCACCT 59.676 38.462 0.00 0.00 0.00 4.00
550 551 6.097696 ACCCATTAAACAATATAACCAGCACC 59.902 38.462 0.00 0.00 0.00 5.01
551 552 7.107639 ACCCATTAAACAATATAACCAGCAC 57.892 36.000 0.00 0.00 0.00 4.40
552 553 7.726033 AACCCATTAAACAATATAACCAGCA 57.274 32.000 0.00 0.00 0.00 4.41
564 565 9.660180 GCAAAAGGATAATTAACCCATTAAACA 57.340 29.630 8.09 0.00 33.98 2.83
565 566 9.104965 GGCAAAAGGATAATTAACCCATTAAAC 57.895 33.333 8.09 0.00 33.98 2.01
566 567 8.268605 GGGCAAAAGGATAATTAACCCATTAAA 58.731 33.333 8.09 0.00 33.98 1.52
567 568 7.625682 AGGGCAAAAGGATAATTAACCCATTAA 59.374 33.333 8.09 0.00 37.28 1.40
568 569 7.136203 AGGGCAAAAGGATAATTAACCCATTA 58.864 34.615 8.09 0.00 37.28 1.90
569 570 5.970021 AGGGCAAAAGGATAATTAACCCATT 59.030 36.000 8.09 2.04 37.28 3.16
570 571 5.537914 AGGGCAAAAGGATAATTAACCCAT 58.462 37.500 8.09 0.00 37.28 4.00
676 677 1.579932 GAGACGGCAGAGTTCACGA 59.420 57.895 0.00 0.00 0.00 4.35
996 999 2.172293 GGAGCTTGAGGAAGACATGGAT 59.828 50.000 0.00 0.00 0.00 3.41
1113 1116 1.337823 CGATTCTGGTTCCTCGGTGTT 60.338 52.381 0.00 0.00 0.00 3.32
1151 1154 2.102588 CCGATTCTTACCCCATTCTCGT 59.897 50.000 0.00 0.00 0.00 4.18
1179 1182 1.131826 CGACGACGAAAATGGTGCC 59.868 57.895 0.00 0.00 42.66 5.01
1697 1700 7.227910 AGCTGCATTTCATTGATCAAAAGTTTT 59.772 29.630 13.09 0.00 0.00 2.43
1993 2043 7.903995 TTTGGTCTTTCATTTAAATCATGGC 57.096 32.000 0.00 0.00 0.00 4.40
2038 2088 2.686915 GCGTAAACCTCTACCAGAGCTA 59.313 50.000 0.00 0.00 40.98 3.32
2210 2260 0.901114 TGTCCTAGCGGTTACCAGCA 60.901 55.000 17.30 5.89 35.48 4.41
2516 2571 1.003051 GAGGGGGTGAGAAGCCCTA 59.997 63.158 12.46 0.00 45.39 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.