Multiple sequence alignment - TraesCS1A01G085700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G085700 chr1A 100.000 3685 0 0 1 3685 71726121 71722437 0.000000e+00 6806.0
1 TraesCS1A01G085700 chr1A 75.142 1231 240 54 1058 2257 32190984 32192179 5.460000e-143 518.0
2 TraesCS1A01G085700 chr1A 94.681 282 13 2 6 285 554516339 554516058 1.570000e-118 436.0
3 TraesCS1A01G085700 chr1B 93.798 2596 94 8 939 3502 112866218 112863658 0.000000e+00 3840.0
4 TraesCS1A01G085700 chr1B 76.610 1693 290 63 987 2621 113516759 113515115 0.000000e+00 835.0
5 TraesCS1A01G085700 chr1B 77.856 1138 205 35 1149 2264 113026218 113025106 0.000000e+00 662.0
6 TraesCS1A01G085700 chr1B 75.117 1491 282 51 1146 2600 113498991 113497554 1.880000e-172 616.0
7 TraesCS1A01G085700 chr1B 75.050 1491 283 51 1146 2600 113316203 113314766 8.750000e-171 610.0
8 TraesCS1A01G085700 chr1B 89.944 179 17 1 743 920 112866381 112866203 2.860000e-56 230.0
9 TraesCS1A01G085700 chr1B 92.647 68 3 2 689 756 112866751 112866686 3.030000e-16 97.1
10 TraesCS1A01G085700 chr1B 100.000 45 0 0 3641 3685 112863461 112863417 2.360000e-12 84.2
11 TraesCS1A01G085700 chr1B 96.875 32 0 1 1896 1926 658405039 658405070 7.000000e-03 52.8
12 TraesCS1A01G085700 chr1D 95.302 1575 54 7 983 2557 71639900 71638346 0.000000e+00 2481.0
13 TraesCS1A01G085700 chr1D 78.546 1142 194 39 1143 2264 71769960 71768850 0.000000e+00 704.0
14 TraesCS1A01G085700 chr1D 92.935 184 12 1 310 492 51803770 51803587 2.180000e-67 267.0
15 TraesCS1A01G085700 chr1D 91.099 191 13 3 311 499 51742001 51741813 4.720000e-64 255.0
16 TraesCS1A01G085700 chr1D 91.333 150 8 5 543 692 349471138 349470994 2.240000e-47 200.0
17 TraesCS1A01G085700 chr1D 90.476 147 11 2 546 691 112352175 112352031 1.350000e-44 191.0
18 TraesCS1A01G085700 chr1D 88.961 154 13 3 536 688 224215915 224215765 1.750000e-43 187.0
19 TraesCS1A01G085700 chr1D 85.542 166 15 5 689 849 71640238 71640077 8.190000e-37 165.0
20 TraesCS1A01G085700 chr1D 87.770 139 13 4 554 691 57313179 57313314 3.810000e-35 159.0
21 TraesCS1A01G085700 chr1D 85.897 156 14 3 536 690 216353366 216353514 3.810000e-35 159.0
22 TraesCS1A01G085700 chr1D 91.026 78 4 1 843 920 71640055 71639981 6.510000e-18 102.0
23 TraesCS1A01G085700 chr1D 96.970 33 1 0 939 971 71639996 71639964 5.140000e-04 56.5
24 TraesCS1A01G085700 chr5B 79.309 1996 279 72 1137 3082 631391842 631389931 0.000000e+00 1275.0
25 TraesCS1A01G085700 chr5B 80.807 1438 201 36 1137 2560 626251044 626249668 0.000000e+00 1057.0
26 TraesCS1A01G085700 chr5B 76.389 576 80 30 2541 3087 626249657 626249109 3.650000e-65 259.0
27 TraesCS1A01G085700 chr5B 89.172 157 12 3 536 687 586357655 586357499 1.350000e-44 191.0
28 TraesCS1A01G085700 chr5A 82.933 1125 162 16 1137 2252 631277209 631276106 0.000000e+00 987.0
29 TraesCS1A01G085700 chr5A 72.926 1145 240 51 1143 2249 451222596 451221484 2.120000e-87 333.0
30 TraesCS1A01G085700 chr5A 91.083 157 10 4 536 689 397505913 397506068 3.730000e-50 209.0
31 TraesCS1A01G085700 chr5A 78.767 292 35 14 2553 2829 631268010 631267731 1.760000e-38 171.0
32 TraesCS1A01G085700 chrUn 75.117 1491 282 51 1146 2600 372932582 372934019 1.880000e-172 616.0
33 TraesCS1A01G085700 chrUn 95.273 275 13 0 6 280 231561197 231560923 1.570000e-118 436.0
34 TraesCS1A01G085700 chr4B 94.631 298 16 0 6 303 209115479 209115776 2.590000e-126 462.0
35 TraesCS1A01G085700 chr4B 90.323 155 12 3 536 688 600498143 600497990 2.240000e-47 200.0
36 TraesCS1A01G085700 chr4B 89.032 155 11 6 538 692 506326370 506326518 1.750000e-43 187.0
37 TraesCS1A01G085700 chr7D 94.295 298 16 1 6 303 307137667 307137371 4.340000e-124 455.0
38 TraesCS1A01G085700 chr6A 94.681 282 13 2 6 285 53807563 53807282 1.570000e-118 436.0
39 TraesCS1A01G085700 chr6A 94.964 278 13 1 6 283 215598574 215598850 5.650000e-118 435.0
40 TraesCS1A01G085700 chr6A 91.613 155 11 2 536 689 109973796 109973949 2.880000e-51 213.0
41 TraesCS1A01G085700 chr6A 91.139 158 12 2 536 691 494463252 494463095 2.880000e-51 213.0
42 TraesCS1A01G085700 chr6A 89.103 156 15 2 536 689 608553265 608553110 3.760000e-45 193.0
43 TraesCS1A01G085700 chr6A 80.000 250 44 4 2359 2605 87910412 87910166 2.920000e-41 180.0
44 TraesCS1A01G085700 chr5D 94.681 282 13 2 6 285 446178385 446178104 1.570000e-118 436.0
45 TraesCS1A01G085700 chr5D 93.370 181 12 0 308 488 334887335 334887155 6.070000e-68 268.0
46 TraesCS1A01G085700 chr5D 88.824 170 14 5 525 690 495292353 495292185 1.730000e-48 204.0
47 TraesCS1A01G085700 chr5D 86.550 171 19 4 524 690 477320597 477320427 6.280000e-43 185.0
48 TraesCS1A01G085700 chr5D 85.965 171 18 4 522 691 542970684 542970849 1.050000e-40 178.0
49 TraesCS1A01G085700 chr3B 94.681 282 13 2 6 285 101915267 101914986 1.570000e-118 436.0
50 TraesCS1A01G085700 chr2D 92.977 299 21 0 6 304 377989469 377989767 1.570000e-118 436.0
51 TraesCS1A01G085700 chr2D 91.099 191 13 3 311 499 108278358 108278170 4.720000e-64 255.0
52 TraesCS1A01G085700 chr2D 88.961 154 16 1 536 688 2445388 2445235 4.860000e-44 189.0
53 TraesCS1A01G085700 chr7B 93.989 183 10 1 308 489 480277601 480277783 3.620000e-70 276.0
54 TraesCS1A01G085700 chr7B 92.896 183 11 2 310 490 587901301 587901483 7.850000e-67 265.0
55 TraesCS1A01G085700 chr7A 93.011 186 10 3 308 490 707996105 707996290 6.070000e-68 268.0
56 TraesCS1A01G085700 chr7A 90.123 162 11 3 536 693 660550029 660549869 4.820000e-49 206.0
57 TraesCS1A01G085700 chr2A 92.973 185 11 1 308 490 617759725 617759909 6.070000e-68 268.0
58 TraesCS1A01G085700 chr3A 93.296 179 12 0 310 488 92270556 92270734 7.850000e-67 265.0
59 TraesCS1A01G085700 chr3A 94.231 156 7 2 536 689 78529492 78529647 1.710000e-58 237.0
60 TraesCS1A01G085700 chr3A 91.558 154 11 2 536 688 602243120 602242968 1.040000e-50 211.0
61 TraesCS1A01G085700 chr6D 93.333 150 10 0 541 690 24267034 24266885 4.790000e-54 222.0
62 TraesCS1A01G085700 chr6D 87.742 155 15 4 536 689 370692048 370692199 1.050000e-40 178.0
63 TraesCS1A01G085700 chr6D 77.455 275 52 7 2336 2605 70735718 70735449 4.930000e-34 156.0
64 TraesCS1A01G085700 chr4A 92.208 154 11 1 536 688 100636389 100636542 2.230000e-52 217.0
65 TraesCS1A01G085700 chr4D 88.961 154 13 2 536 688 411190125 411189975 1.750000e-43 187.0
66 TraesCS1A01G085700 chr4D 83.333 192 21 6 503 690 419156332 419156148 2.280000e-37 167.0
67 TraesCS1A01G085700 chr4D 85.897 156 19 3 536 689 81662577 81662423 2.940000e-36 163.0
68 TraesCS1A01G085700 chr4D 86.713 143 15 3 548 688 491692898 491693038 4.930000e-34 156.0
69 TraesCS1A01G085700 chr4D 80.460 174 21 8 522 691 6777175 6777339 1.800000e-23 121.0
70 TraesCS1A01G085700 chr6B 73.714 525 101 28 2111 2623 145575230 145574731 1.760000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G085700 chr1A 71722437 71726121 3684 True 6806.000 6806 100.00000 1 3685 1 chr1A.!!$R1 3684
1 TraesCS1A01G085700 chr1A 32190984 32192179 1195 False 518.000 518 75.14200 1058 2257 1 chr1A.!!$F1 1199
2 TraesCS1A01G085700 chr1B 112863417 112866751 3334 True 1062.825 3840 94.09725 689 3685 4 chr1B.!!$R5 2996
3 TraesCS1A01G085700 chr1B 113515115 113516759 1644 True 835.000 835 76.61000 987 2621 1 chr1B.!!$R4 1634
4 TraesCS1A01G085700 chr1B 113025106 113026218 1112 True 662.000 662 77.85600 1149 2264 1 chr1B.!!$R1 1115
5 TraesCS1A01G085700 chr1B 113497554 113498991 1437 True 616.000 616 75.11700 1146 2600 1 chr1B.!!$R3 1454
6 TraesCS1A01G085700 chr1B 113314766 113316203 1437 True 610.000 610 75.05000 1146 2600 1 chr1B.!!$R2 1454
7 TraesCS1A01G085700 chr1D 71768850 71769960 1110 True 704.000 704 78.54600 1143 2264 1 chr1D.!!$R3 1121
8 TraesCS1A01G085700 chr1D 71638346 71640238 1892 True 701.125 2481 92.21000 689 2557 4 chr1D.!!$R7 1868
9 TraesCS1A01G085700 chr5B 631389931 631391842 1911 True 1275.000 1275 79.30900 1137 3082 1 chr5B.!!$R2 1945
10 TraesCS1A01G085700 chr5B 626249109 626251044 1935 True 658.000 1057 78.59800 1137 3087 2 chr5B.!!$R3 1950
11 TraesCS1A01G085700 chr5A 631276106 631277209 1103 True 987.000 987 82.93300 1137 2252 1 chr5A.!!$R3 1115
12 TraesCS1A01G085700 chr5A 451221484 451222596 1112 True 333.000 333 72.92600 1143 2249 1 chr5A.!!$R1 1106
13 TraesCS1A01G085700 chrUn 372932582 372934019 1437 False 616.000 616 75.11700 1146 2600 1 chrUn.!!$F1 1454


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
905 1254 0.035439 ATCCTGCGTTTCGTTCCCAT 60.035 50.0 0.0 0.0 0.0 4.00 F
927 1276 0.037590 CCCCCATTCCGTTGTCTCAA 59.962 55.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2638 3180 1.757949 TGGGCATCCAAAGACGACA 59.242 52.632 0.00 0.00 40.73 4.35 R
2721 3263 5.129815 ACCATTGGCATGCTTATTCTGAAAT 59.870 36.000 18.92 1.71 0.00 2.17 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.865090 AGGAGACTCGATCATCAAATTATAAGT 58.135 33.333 0.00 0.00 32.90 2.24
28 29 9.482627 GGAGACTCGATCATCAAATTATAAGTT 57.517 33.333 0.00 0.00 0.00 2.66
45 46 9.621629 ATTATAAGTTCATTTCATACGGAACCA 57.378 29.630 0.00 0.00 40.27 3.67
46 47 5.880054 AAGTTCATTTCATACGGAACCAG 57.120 39.130 0.00 0.00 40.27 4.00
47 48 5.160607 AGTTCATTTCATACGGAACCAGA 57.839 39.130 0.00 0.00 40.27 3.86
48 49 4.935808 AGTTCATTTCATACGGAACCAGAC 59.064 41.667 0.00 0.00 40.27 3.51
49 50 3.869065 TCATTTCATACGGAACCAGACC 58.131 45.455 0.00 0.00 34.56 3.85
55 56 3.041940 CGGAACCAGACCGTGCAC 61.042 66.667 6.82 6.82 44.57 4.57
56 57 2.110213 GGAACCAGACCGTGCACA 59.890 61.111 18.64 0.00 0.00 4.57
57 58 1.302511 GGAACCAGACCGTGCACAT 60.303 57.895 18.64 3.58 0.00 3.21
58 59 0.889186 GGAACCAGACCGTGCACATT 60.889 55.000 18.64 1.56 0.00 2.71
59 60 0.951558 GAACCAGACCGTGCACATTT 59.048 50.000 18.64 0.00 0.00 2.32
60 61 1.336755 GAACCAGACCGTGCACATTTT 59.663 47.619 18.64 0.00 0.00 1.82
61 62 1.398692 ACCAGACCGTGCACATTTTT 58.601 45.000 18.64 0.00 0.00 1.94
62 63 2.577700 ACCAGACCGTGCACATTTTTA 58.422 42.857 18.64 0.00 0.00 1.52
63 64 3.153919 ACCAGACCGTGCACATTTTTAT 58.846 40.909 18.64 0.00 0.00 1.40
64 65 3.572255 ACCAGACCGTGCACATTTTTATT 59.428 39.130 18.64 0.00 0.00 1.40
65 66 4.762765 ACCAGACCGTGCACATTTTTATTA 59.237 37.500 18.64 0.00 0.00 0.98
66 67 5.417580 ACCAGACCGTGCACATTTTTATTAT 59.582 36.000 18.64 0.00 0.00 1.28
67 68 6.600032 ACCAGACCGTGCACATTTTTATTATA 59.400 34.615 18.64 0.00 0.00 0.98
68 69 7.121463 ACCAGACCGTGCACATTTTTATTATAA 59.879 33.333 18.64 0.00 0.00 0.98
69 70 7.643764 CCAGACCGTGCACATTTTTATTATAAG 59.356 37.037 18.64 0.00 0.00 1.73
70 71 8.394877 CAGACCGTGCACATTTTTATTATAAGA 58.605 33.333 18.64 0.00 0.00 2.10
71 72 8.952278 AGACCGTGCACATTTTTATTATAAGAA 58.048 29.630 18.64 0.00 0.00 2.52
72 73 9.221775 GACCGTGCACATTTTTATTATAAGAAG 57.778 33.333 18.64 0.00 0.00 2.85
73 74 8.188139 ACCGTGCACATTTTTATTATAAGAAGG 58.812 33.333 18.64 5.45 0.00 3.46
74 75 7.647715 CCGTGCACATTTTTATTATAAGAAGGG 59.352 37.037 18.64 0.00 0.00 3.95
75 76 7.647715 CGTGCACATTTTTATTATAAGAAGGGG 59.352 37.037 18.64 2.24 0.00 4.79
76 77 8.474831 GTGCACATTTTTATTATAAGAAGGGGT 58.525 33.333 13.17 0.00 0.00 4.95
77 78 8.691797 TGCACATTTTTATTATAAGAAGGGGTC 58.308 33.333 4.55 0.00 0.00 4.46
78 79 8.691797 GCACATTTTTATTATAAGAAGGGGTCA 58.308 33.333 4.55 0.00 0.00 4.02
83 84 9.908747 TTTTTATTATAAGAAGGGGTCATTCGA 57.091 29.630 0.00 0.00 0.00 3.71
84 85 9.555727 TTTTATTATAAGAAGGGGTCATTCGAG 57.444 33.333 0.00 0.00 0.00 4.04
85 86 2.981859 TAAGAAGGGGTCATTCGAGC 57.018 50.000 0.00 0.00 39.00 5.03
97 98 6.473397 GGTCATTCGAGCCTATGAAAATAG 57.527 41.667 0.00 0.00 32.94 1.73
98 99 5.409826 GGTCATTCGAGCCTATGAAAATAGG 59.590 44.000 7.32 7.32 45.05 2.57
99 100 6.223852 GTCATTCGAGCCTATGAAAATAGGA 58.776 40.000 14.61 0.00 45.08 2.94
100 101 6.876257 GTCATTCGAGCCTATGAAAATAGGAT 59.124 38.462 14.61 8.90 44.82 3.24
101 102 8.035394 GTCATTCGAGCCTATGAAAATAGGATA 58.965 37.037 14.61 0.00 42.45 2.59
102 103 8.035394 TCATTCGAGCCTATGAAAATAGGATAC 58.965 37.037 14.61 3.62 42.45 2.24
126 127 8.928270 ACTCTGTTTACATAGAAATTCCTACG 57.072 34.615 2.71 0.00 0.00 3.51
127 128 8.529476 ACTCTGTTTACATAGAAATTCCTACGT 58.471 33.333 0.00 0.00 0.00 3.57
128 129 9.367444 CTCTGTTTACATAGAAATTCCTACGTT 57.633 33.333 0.00 0.00 0.00 3.99
129 130 9.362539 TCTGTTTACATAGAAATTCCTACGTTC 57.637 33.333 0.00 0.00 0.00 3.95
130 131 9.367444 CTGTTTACATAGAAATTCCTACGTTCT 57.633 33.333 0.00 0.00 35.77 3.01
131 132 9.715121 TGTTTACATAGAAATTCCTACGTTCTT 57.285 29.630 0.00 0.00 33.70 2.52
136 137 9.886132 ACATAGAAATTCCTACGTTCTTACATT 57.114 29.630 0.00 0.00 33.70 2.71
146 147 9.412460 TCCTACGTTCTTACATTCTATTTAGGA 57.588 33.333 0.00 0.00 0.00 2.94
167 168 9.892444 TTAGGATTAGGAATAGGTGTAATCAGA 57.108 33.333 0.00 0.00 34.76 3.27
168 169 8.196378 AGGATTAGGAATAGGTGTAATCAGAC 57.804 38.462 0.00 0.00 34.76 3.51
169 170 7.235812 AGGATTAGGAATAGGTGTAATCAGACC 59.764 40.741 0.00 0.00 38.41 3.85
176 177 4.373156 AGGTGTAATCAGACCTGCTTTT 57.627 40.909 0.00 0.00 46.41 2.27
177 178 4.074970 AGGTGTAATCAGACCTGCTTTTG 58.925 43.478 0.00 0.00 46.41 2.44
178 179 4.072131 GGTGTAATCAGACCTGCTTTTGA 58.928 43.478 0.00 0.00 35.19 2.69
179 180 4.083271 GGTGTAATCAGACCTGCTTTTGAC 60.083 45.833 0.00 0.00 35.19 3.18
180 181 4.515191 GTGTAATCAGACCTGCTTTTGACA 59.485 41.667 0.00 0.00 0.00 3.58
181 182 5.182001 GTGTAATCAGACCTGCTTTTGACAT 59.818 40.000 0.00 0.00 0.00 3.06
182 183 6.371548 GTGTAATCAGACCTGCTTTTGACATA 59.628 38.462 0.00 0.00 0.00 2.29
183 184 7.066284 GTGTAATCAGACCTGCTTTTGACATAT 59.934 37.037 0.00 0.00 0.00 1.78
184 185 6.690194 AATCAGACCTGCTTTTGACATATC 57.310 37.500 0.00 0.00 0.00 1.63
185 186 5.426689 TCAGACCTGCTTTTGACATATCT 57.573 39.130 0.00 0.00 0.00 1.98
186 187 6.544928 TCAGACCTGCTTTTGACATATCTA 57.455 37.500 0.00 0.00 0.00 1.98
187 188 7.129457 TCAGACCTGCTTTTGACATATCTAT 57.871 36.000 0.00 0.00 0.00 1.98
188 189 7.212976 TCAGACCTGCTTTTGACATATCTATC 58.787 38.462 0.00 0.00 0.00 2.08
189 190 6.426328 CAGACCTGCTTTTGACATATCTATCC 59.574 42.308 0.00 0.00 0.00 2.59
190 191 6.328672 AGACCTGCTTTTGACATATCTATCCT 59.671 38.462 0.00 0.00 0.00 3.24
191 192 7.510685 AGACCTGCTTTTGACATATCTATCCTA 59.489 37.037 0.00 0.00 0.00 2.94
192 193 8.212259 ACCTGCTTTTGACATATCTATCCTAT 57.788 34.615 0.00 0.00 0.00 2.57
193 194 8.664079 ACCTGCTTTTGACATATCTATCCTATT 58.336 33.333 0.00 0.00 0.00 1.73
217 218 9.995594 ATTATTATTTGGATACCATATGCACCT 57.004 29.630 0.00 0.00 31.53 4.00
218 219 7.944729 ATTATTTGGATACCATATGCACCTC 57.055 36.000 0.00 0.00 31.53 3.85
219 220 5.589367 ATTTGGATACCATATGCACCTCT 57.411 39.130 0.00 0.00 31.53 3.69
220 221 5.387113 TTTGGATACCATATGCACCTCTT 57.613 39.130 0.00 0.00 31.53 2.85
221 222 5.387113 TTGGATACCATATGCACCTCTTT 57.613 39.130 0.00 0.00 31.53 2.52
222 223 4.717877 TGGATACCATATGCACCTCTTTG 58.282 43.478 0.00 0.00 0.00 2.77
223 224 4.074970 GGATACCATATGCACCTCTTTGG 58.925 47.826 0.00 0.00 42.93 3.28
224 225 2.442236 ACCATATGCACCTCTTTGGG 57.558 50.000 0.00 0.00 41.11 4.12
225 226 1.035139 CCATATGCACCTCTTTGGGC 58.965 55.000 0.00 0.00 41.11 5.36
226 227 1.410648 CCATATGCACCTCTTTGGGCT 60.411 52.381 0.00 0.00 41.11 5.19
227 228 2.381911 CATATGCACCTCTTTGGGCTT 58.618 47.619 0.00 0.00 41.11 4.35
228 229 2.128771 TATGCACCTCTTTGGGCTTC 57.871 50.000 0.00 0.00 41.11 3.86
229 230 0.407139 ATGCACCTCTTTGGGCTTCT 59.593 50.000 0.00 0.00 41.11 2.85
230 231 1.064003 TGCACCTCTTTGGGCTTCTA 58.936 50.000 0.00 0.00 41.11 2.10
231 232 1.635487 TGCACCTCTTTGGGCTTCTAT 59.365 47.619 0.00 0.00 41.11 1.98
232 233 2.041620 TGCACCTCTTTGGGCTTCTATT 59.958 45.455 0.00 0.00 41.11 1.73
233 234 2.424956 GCACCTCTTTGGGCTTCTATTG 59.575 50.000 0.00 0.00 41.11 1.90
234 235 3.873801 GCACCTCTTTGGGCTTCTATTGA 60.874 47.826 0.00 0.00 41.11 2.57
235 236 4.335416 CACCTCTTTGGGCTTCTATTGAA 58.665 43.478 0.00 0.00 41.11 2.69
236 237 4.952335 CACCTCTTTGGGCTTCTATTGAAT 59.048 41.667 0.00 0.00 41.11 2.57
237 238 5.067023 CACCTCTTTGGGCTTCTATTGAATC 59.933 44.000 0.00 0.00 41.11 2.52
238 239 4.274459 CCTCTTTGGGCTTCTATTGAATCG 59.726 45.833 0.00 0.00 0.00 3.34
239 240 5.097742 TCTTTGGGCTTCTATTGAATCGA 57.902 39.130 0.00 0.00 0.00 3.59
240 241 5.496556 TCTTTGGGCTTCTATTGAATCGAA 58.503 37.500 0.00 0.00 0.00 3.71
241 242 5.943416 TCTTTGGGCTTCTATTGAATCGAAA 59.057 36.000 0.00 0.00 0.00 3.46
242 243 6.432783 TCTTTGGGCTTCTATTGAATCGAAAA 59.567 34.615 0.00 0.00 0.00 2.29
243 244 6.582677 TTGGGCTTCTATTGAATCGAAAAA 57.417 33.333 0.00 0.00 0.00 1.94
244 245 6.773976 TGGGCTTCTATTGAATCGAAAAAT 57.226 33.333 0.00 0.00 0.00 1.82
245 246 7.169158 TGGGCTTCTATTGAATCGAAAAATT 57.831 32.000 0.00 0.00 0.00 1.82
246 247 7.035004 TGGGCTTCTATTGAATCGAAAAATTG 58.965 34.615 0.00 0.00 0.00 2.32
247 248 6.476706 GGGCTTCTATTGAATCGAAAAATTGG 59.523 38.462 0.00 0.00 0.00 3.16
248 249 7.257722 GGCTTCTATTGAATCGAAAAATTGGA 58.742 34.615 0.00 0.00 0.00 3.53
249 250 7.922811 GGCTTCTATTGAATCGAAAAATTGGAT 59.077 33.333 0.00 0.00 0.00 3.41
250 251 9.305925 GCTTCTATTGAATCGAAAAATTGGATT 57.694 29.630 0.00 0.78 40.19 3.01
256 257 9.874205 ATTGAATCGAAAAATTGGATTGTACAT 57.126 25.926 0.00 0.00 38.07 2.29
257 258 8.909708 TGAATCGAAAAATTGGATTGTACATC 57.090 30.769 0.00 0.00 38.07 3.06
258 259 8.739039 TGAATCGAAAAATTGGATTGTACATCT 58.261 29.630 0.00 0.00 38.07 2.90
259 260 9.573133 GAATCGAAAAATTGGATTGTACATCTT 57.427 29.630 0.00 0.00 38.07 2.40
260 261 9.927668 AATCGAAAAATTGGATTGTACATCTTT 57.072 25.926 0.00 0.00 36.84 2.52
261 262 8.964420 TCGAAAAATTGGATTGTACATCTTTC 57.036 30.769 0.00 2.68 0.00 2.62
262 263 8.572185 TCGAAAAATTGGATTGTACATCTTTCA 58.428 29.630 0.00 0.00 0.00 2.69
263 264 9.357652 CGAAAAATTGGATTGTACATCTTTCAT 57.642 29.630 0.00 0.00 0.00 2.57
271 272 9.904198 TGGATTGTACATCTTTCATCTTATTGA 57.096 29.630 0.00 0.00 0.00 2.57
289 290 9.619316 TCTTATTGATTTTGGTACATTTCAACG 57.381 29.630 0.00 0.00 39.30 4.10
290 291 8.749841 TTATTGATTTTGGTACATTTCAACGG 57.250 30.769 0.00 0.00 39.30 4.44
291 292 6.392625 TTGATTTTGGTACATTTCAACGGA 57.607 33.333 0.00 0.00 39.30 4.69
292 293 6.582677 TGATTTTGGTACATTTCAACGGAT 57.417 33.333 0.00 0.00 39.30 4.18
293 294 7.689446 TGATTTTGGTACATTTCAACGGATA 57.311 32.000 0.00 0.00 39.30 2.59
294 295 8.112016 TGATTTTGGTACATTTCAACGGATAA 57.888 30.769 0.00 0.00 39.30 1.75
295 296 8.744652 TGATTTTGGTACATTTCAACGGATAAT 58.255 29.630 0.00 0.00 39.30 1.28
296 297 8.925161 ATTTTGGTACATTTCAACGGATAATG 57.075 30.769 0.00 0.00 39.30 1.90
297 298 5.493133 TGGTACATTTCAACGGATAATGC 57.507 39.130 0.00 0.00 33.61 3.56
298 299 4.944317 TGGTACATTTCAACGGATAATGCA 59.056 37.500 0.00 0.00 33.61 3.96
299 300 5.416013 TGGTACATTTCAACGGATAATGCAA 59.584 36.000 0.00 0.00 33.61 4.08
300 301 6.071896 TGGTACATTTCAACGGATAATGCAAA 60.072 34.615 0.00 0.00 33.61 3.68
301 302 6.978080 GGTACATTTCAACGGATAATGCAAAT 59.022 34.615 0.00 0.00 33.61 2.32
302 303 7.167468 GGTACATTTCAACGGATAATGCAAATC 59.833 37.037 0.00 0.00 33.61 2.17
303 304 6.629128 ACATTTCAACGGATAATGCAAATCA 58.371 32.000 12.84 0.00 33.61 2.57
304 305 7.267128 ACATTTCAACGGATAATGCAAATCAT 58.733 30.769 12.84 0.35 36.87 2.45
305 306 7.223193 ACATTTCAACGGATAATGCAAATCATG 59.777 33.333 12.84 8.85 35.13 3.07
306 307 5.185668 TCAACGGATAATGCAAATCATGG 57.814 39.130 12.84 5.66 35.13 3.66
307 308 4.886489 TCAACGGATAATGCAAATCATGGA 59.114 37.500 12.84 3.05 35.13 3.41
308 309 5.535783 TCAACGGATAATGCAAATCATGGAT 59.464 36.000 12.84 0.00 42.62 3.41
309 310 5.381174 ACGGATAATGCAAATCATGGATG 57.619 39.130 12.84 0.00 39.46 3.51
310 311 4.219070 ACGGATAATGCAAATCATGGATGG 59.781 41.667 12.84 0.00 39.46 3.51
311 312 4.381185 CGGATAATGCAAATCATGGATGGG 60.381 45.833 12.84 0.00 39.46 4.00
312 313 4.529377 GGATAATGCAAATCATGGATGGGT 59.471 41.667 12.84 0.00 39.46 4.51
313 314 5.337009 GGATAATGCAAATCATGGATGGGTC 60.337 44.000 12.84 0.00 39.46 4.46
314 315 2.832643 TGCAAATCATGGATGGGTCT 57.167 45.000 0.00 0.00 0.00 3.85
315 316 2.380941 TGCAAATCATGGATGGGTCTG 58.619 47.619 0.00 0.00 0.00 3.51
316 317 2.291735 TGCAAATCATGGATGGGTCTGT 60.292 45.455 0.00 0.00 0.00 3.41
317 318 2.360165 GCAAATCATGGATGGGTCTGTC 59.640 50.000 0.00 0.00 0.00 3.51
318 319 3.894759 CAAATCATGGATGGGTCTGTCT 58.105 45.455 0.00 0.00 0.00 3.41
319 320 4.686944 GCAAATCATGGATGGGTCTGTCTA 60.687 45.833 0.00 0.00 0.00 2.59
320 321 4.970860 AATCATGGATGGGTCTGTCTAG 57.029 45.455 0.00 0.00 0.00 2.43
321 322 2.682594 TCATGGATGGGTCTGTCTAGG 58.317 52.381 0.00 0.00 0.00 3.02
322 323 2.247372 TCATGGATGGGTCTGTCTAGGA 59.753 50.000 0.00 0.00 0.00 2.94
323 324 2.160721 TGGATGGGTCTGTCTAGGAC 57.839 55.000 0.00 0.00 0.00 3.85
324 325 1.361197 TGGATGGGTCTGTCTAGGACA 59.639 52.381 0.43 0.43 40.50 4.02
325 326 1.757699 GGATGGGTCTGTCTAGGACAC 59.242 57.143 0.00 0.00 37.67 3.67
327 328 2.623418 TGGGTCTGTCTAGGACACAT 57.377 50.000 0.00 0.00 41.46 3.21
328 329 2.457598 TGGGTCTGTCTAGGACACATC 58.542 52.381 0.00 0.00 41.46 3.06
329 330 2.043115 TGGGTCTGTCTAGGACACATCT 59.957 50.000 0.00 0.00 41.46 2.90
330 331 3.268595 TGGGTCTGTCTAGGACACATCTA 59.731 47.826 0.00 0.00 41.46 1.98
331 332 3.886505 GGGTCTGTCTAGGACACATCTAG 59.113 52.174 0.00 0.00 37.67 2.43
332 333 4.385421 GGGTCTGTCTAGGACACATCTAGA 60.385 50.000 0.00 0.00 37.67 2.43
333 334 5.381757 GGTCTGTCTAGGACACATCTAGAT 58.618 45.833 0.00 0.00 43.25 1.98
334 335 5.240623 GGTCTGTCTAGGACACATCTAGATG 59.759 48.000 27.63 27.63 43.25 2.90
359 360 9.811995 TGTAACATAACTATGTCACATCTAACC 57.188 33.333 0.00 0.00 45.55 2.85
361 362 8.948631 AACATAACTATGTCACATCTAACCTG 57.051 34.615 0.00 0.00 45.55 4.00
362 363 8.306313 ACATAACTATGTCACATCTAACCTGA 57.694 34.615 0.00 0.00 42.96 3.86
363 364 8.928448 ACATAACTATGTCACATCTAACCTGAT 58.072 33.333 0.00 0.00 42.96 2.90
364 365 9.201127 CATAACTATGTCACATCTAACCTGATG 57.799 37.037 0.00 0.00 46.61 3.07
377 378 9.212641 CATCTAACCTGATGTCCACTATATTTG 57.787 37.037 0.00 0.00 39.05 2.32
378 379 8.319057 TCTAACCTGATGTCCACTATATTTGT 57.681 34.615 0.00 0.00 0.00 2.83
379 380 8.204160 TCTAACCTGATGTCCACTATATTTGTG 58.796 37.037 2.64 2.64 35.39 3.33
426 427 5.669164 TTTTTGTTCCTTGTTGCTACCTT 57.331 34.783 0.00 0.00 0.00 3.50
427 428 6.777213 TTTTTGTTCCTTGTTGCTACCTTA 57.223 33.333 0.00 0.00 0.00 2.69
428 429 6.969993 TTTTGTTCCTTGTTGCTACCTTAT 57.030 33.333 0.00 0.00 0.00 1.73
429 430 6.969993 TTTGTTCCTTGTTGCTACCTTATT 57.030 33.333 0.00 0.00 0.00 1.40
430 431 6.969993 TTGTTCCTTGTTGCTACCTTATTT 57.030 33.333 0.00 0.00 0.00 1.40
431 432 6.325919 TGTTCCTTGTTGCTACCTTATTTG 57.674 37.500 0.00 0.00 0.00 2.32
432 433 5.830991 TGTTCCTTGTTGCTACCTTATTTGT 59.169 36.000 0.00 0.00 0.00 2.83
433 434 5.957842 TCCTTGTTGCTACCTTATTTGTG 57.042 39.130 0.00 0.00 0.00 3.33
434 435 4.764823 TCCTTGTTGCTACCTTATTTGTGG 59.235 41.667 0.00 0.00 0.00 4.17
435 436 4.082245 CCTTGTTGCTACCTTATTTGTGGG 60.082 45.833 0.00 0.00 0.00 4.61
436 437 4.374689 TGTTGCTACCTTATTTGTGGGA 57.625 40.909 0.00 0.00 0.00 4.37
437 438 4.331968 TGTTGCTACCTTATTTGTGGGAG 58.668 43.478 0.00 0.00 37.35 4.30
443 444 6.235231 CTACCTTATTTGTGGGAGCTTAGA 57.765 41.667 0.00 0.00 0.00 2.10
444 445 5.717119 ACCTTATTTGTGGGAGCTTAGAT 57.283 39.130 0.00 0.00 0.00 1.98
445 446 5.440610 ACCTTATTTGTGGGAGCTTAGATG 58.559 41.667 0.00 0.00 0.00 2.90
446 447 5.044846 ACCTTATTTGTGGGAGCTTAGATGT 60.045 40.000 0.00 0.00 0.00 3.06
447 448 5.297776 CCTTATTTGTGGGAGCTTAGATGTG 59.702 44.000 0.00 0.00 0.00 3.21
448 449 4.574674 ATTTGTGGGAGCTTAGATGTGA 57.425 40.909 0.00 0.00 0.00 3.58
449 450 3.334583 TTGTGGGAGCTTAGATGTGAC 57.665 47.619 0.00 0.00 0.00 3.67
450 451 2.256306 TGTGGGAGCTTAGATGTGACA 58.744 47.619 0.00 0.00 0.00 3.58
451 452 2.840038 TGTGGGAGCTTAGATGTGACAT 59.160 45.455 0.00 0.00 0.00 3.06
452 453 3.118629 TGTGGGAGCTTAGATGTGACATC 60.119 47.826 17.46 17.46 0.00 3.06
453 454 2.435805 TGGGAGCTTAGATGTGACATCC 59.564 50.000 21.05 6.28 0.00 3.51
454 455 2.703007 GGGAGCTTAGATGTGACATCCT 59.297 50.000 21.05 11.37 0.00 3.24
455 456 3.135530 GGGAGCTTAGATGTGACATCCTT 59.864 47.826 21.05 7.22 0.00 3.36
456 457 4.345257 GGGAGCTTAGATGTGACATCCTTA 59.655 45.833 21.05 6.22 0.00 2.69
457 458 5.510520 GGGAGCTTAGATGTGACATCCTTAG 60.511 48.000 21.05 15.92 0.00 2.18
458 459 5.303078 GGAGCTTAGATGTGACATCCTTAGA 59.697 44.000 21.05 3.38 0.00 2.10
459 460 6.183360 GGAGCTTAGATGTGACATCCTTAGAA 60.183 42.308 21.05 7.83 0.00 2.10
460 461 7.187824 AGCTTAGATGTGACATCCTTAGAAA 57.812 36.000 21.05 6.46 0.00 2.52
461 462 7.624549 AGCTTAGATGTGACATCCTTAGAAAA 58.375 34.615 21.05 4.95 0.00 2.29
462 463 7.550906 AGCTTAGATGTGACATCCTTAGAAAAC 59.449 37.037 21.05 4.74 0.00 2.43
463 464 7.334421 GCTTAGATGTGACATCCTTAGAAAACA 59.666 37.037 21.05 0.00 0.00 2.83
464 465 9.388506 CTTAGATGTGACATCCTTAGAAAACAT 57.611 33.333 21.05 1.75 0.00 2.71
465 466 7.856145 AGATGTGACATCCTTAGAAAACATC 57.144 36.000 21.05 0.00 41.77 3.06
466 467 7.628234 AGATGTGACATCCTTAGAAAACATCT 58.372 34.615 21.05 8.71 44.92 2.90
467 468 8.762645 AGATGTGACATCCTTAGAAAACATCTA 58.237 33.333 21.05 0.00 46.74 1.98
468 469 8.954950 ATGTGACATCCTTAGAAAACATCTAG 57.045 34.615 0.00 0.00 41.59 2.43
469 470 8.134202 TGTGACATCCTTAGAAAACATCTAGA 57.866 34.615 0.00 0.00 41.59 2.43
470 471 8.762645 TGTGACATCCTTAGAAAACATCTAGAT 58.237 33.333 0.00 0.00 41.59 1.98
496 497 8.991783 ATGAATTAGACAAACTGATCATGGAT 57.008 30.769 0.00 0.00 30.89 3.41
500 501 8.768957 ATTAGACAAACTGATCATGGATATCG 57.231 34.615 0.00 0.00 0.00 2.92
501 502 5.545588 AGACAAACTGATCATGGATATCGG 58.454 41.667 0.00 0.00 36.08 4.18
502 503 4.067896 ACAAACTGATCATGGATATCGGC 58.932 43.478 0.00 0.00 33.74 5.54
503 504 2.662006 ACTGATCATGGATATCGGCG 57.338 50.000 0.00 0.00 33.74 6.46
504 505 1.895798 ACTGATCATGGATATCGGCGT 59.104 47.619 6.85 0.00 33.74 5.68
505 506 2.094494 ACTGATCATGGATATCGGCGTC 60.094 50.000 6.85 0.00 33.74 5.19
506 507 1.204704 TGATCATGGATATCGGCGTCC 59.795 52.381 6.85 7.52 35.02 4.79
507 508 1.478510 GATCATGGATATCGGCGTCCT 59.521 52.381 14.96 1.17 35.49 3.85
508 509 2.209690 TCATGGATATCGGCGTCCTA 57.790 50.000 14.96 3.30 35.49 2.94
509 510 2.521126 TCATGGATATCGGCGTCCTAA 58.479 47.619 14.96 0.00 35.49 2.69
510 511 3.096852 TCATGGATATCGGCGTCCTAAT 58.903 45.455 14.96 0.15 35.49 1.73
511 512 4.274978 TCATGGATATCGGCGTCCTAATA 58.725 43.478 14.96 2.46 35.49 0.98
512 513 4.338400 TCATGGATATCGGCGTCCTAATAG 59.662 45.833 14.96 2.72 35.49 1.73
513 514 3.693807 TGGATATCGGCGTCCTAATAGT 58.306 45.455 14.96 0.00 35.49 2.12
514 515 4.084287 TGGATATCGGCGTCCTAATAGTT 58.916 43.478 14.96 0.00 35.49 2.24
515 516 5.255687 TGGATATCGGCGTCCTAATAGTTA 58.744 41.667 14.96 0.00 35.49 2.24
516 517 5.889853 TGGATATCGGCGTCCTAATAGTTAT 59.110 40.000 14.96 0.00 35.49 1.89
517 518 6.039047 TGGATATCGGCGTCCTAATAGTTATC 59.961 42.308 14.96 0.00 35.49 1.75
518 519 6.039047 GGATATCGGCGTCCTAATAGTTATCA 59.961 42.308 6.85 0.00 0.00 2.15
519 520 4.761235 TCGGCGTCCTAATAGTTATCAG 57.239 45.455 6.85 0.00 0.00 2.90
520 521 4.139786 TCGGCGTCCTAATAGTTATCAGT 58.860 43.478 6.85 0.00 0.00 3.41
521 522 5.308014 TCGGCGTCCTAATAGTTATCAGTA 58.692 41.667 6.85 0.00 0.00 2.74
522 523 5.942236 TCGGCGTCCTAATAGTTATCAGTAT 59.058 40.000 6.85 0.00 0.00 2.12
523 524 6.028368 CGGCGTCCTAATAGTTATCAGTATG 58.972 44.000 0.00 0.00 37.54 2.39
524 525 6.331061 GGCGTCCTAATAGTTATCAGTATGG 58.669 44.000 0.00 0.00 36.16 2.74
525 526 6.331061 GCGTCCTAATAGTTATCAGTATGGG 58.669 44.000 0.00 0.00 36.16 4.00
526 527 6.071503 GCGTCCTAATAGTTATCAGTATGGGT 60.072 42.308 0.00 0.00 36.16 4.51
527 528 7.536855 CGTCCTAATAGTTATCAGTATGGGTC 58.463 42.308 0.00 0.00 36.16 4.46
528 529 7.393796 CGTCCTAATAGTTATCAGTATGGGTCT 59.606 40.741 0.00 0.00 36.16 3.85
529 530 8.524487 GTCCTAATAGTTATCAGTATGGGTCTG 58.476 40.741 0.00 0.00 36.16 3.51
530 531 8.232412 TCCTAATAGTTATCAGTATGGGTCTGT 58.768 37.037 0.00 0.00 36.16 3.41
531 532 8.524487 CCTAATAGTTATCAGTATGGGTCTGTC 58.476 40.741 0.00 0.00 36.16 3.51
532 533 9.303116 CTAATAGTTATCAGTATGGGTCTGTCT 57.697 37.037 0.00 0.00 36.16 3.41
534 535 8.871629 ATAGTTATCAGTATGGGTCTGTCTAG 57.128 38.462 0.00 0.00 36.16 2.43
535 536 6.071984 AGTTATCAGTATGGGTCTGTCTAGG 58.928 44.000 0.00 0.00 36.16 3.02
536 537 4.816048 ATCAGTATGGGTCTGTCTAGGA 57.184 45.455 0.00 0.00 36.16 2.94
537 538 3.899726 TCAGTATGGGTCTGTCTAGGAC 58.100 50.000 0.00 0.00 36.16 3.85
538 539 3.268595 TCAGTATGGGTCTGTCTAGGACA 59.731 47.826 0.43 0.43 37.11 4.02
539 540 3.381908 CAGTATGGGTCTGTCTAGGACAC 59.618 52.174 0.00 0.00 37.67 3.67
541 542 2.623418 TGGGTCTGTCTAGGACACAT 57.377 50.000 0.00 0.00 41.46 3.21
542 543 2.902608 TGGGTCTGTCTAGGACACATT 58.097 47.619 0.00 0.00 41.46 2.71
543 544 4.055710 TGGGTCTGTCTAGGACACATTA 57.944 45.455 0.00 0.00 41.46 1.90
544 545 4.620723 TGGGTCTGTCTAGGACACATTAT 58.379 43.478 0.00 0.00 41.46 1.28
545 546 4.405680 TGGGTCTGTCTAGGACACATTATG 59.594 45.833 0.00 0.00 41.46 1.90
577 578 9.515020 TCTAAGCTGATTTTTACTTTGTTTGTG 57.485 29.630 0.00 0.00 0.00 3.33
578 579 7.538303 AAGCTGATTTTTACTTTGTTTGTGG 57.462 32.000 0.00 0.00 0.00 4.17
579 580 6.639563 AGCTGATTTTTACTTTGTTTGTGGT 58.360 32.000 0.00 0.00 0.00 4.16
580 581 6.756542 AGCTGATTTTTACTTTGTTTGTGGTC 59.243 34.615 0.00 0.00 0.00 4.02
581 582 6.756542 GCTGATTTTTACTTTGTTTGTGGTCT 59.243 34.615 0.00 0.00 0.00 3.85
582 583 7.918562 GCTGATTTTTACTTTGTTTGTGGTCTA 59.081 33.333 0.00 0.00 0.00 2.59
583 584 9.965824 CTGATTTTTACTTTGTTTGTGGTCTAT 57.034 29.630 0.00 0.00 0.00 1.98
653 654 9.965902 ATTTATGGGAGGTTAGATGTGATATTC 57.034 33.333 0.00 0.00 0.00 1.75
654 655 8.742125 TTATGGGAGGTTAGATGTGATATTCT 57.258 34.615 0.00 0.00 0.00 2.40
655 656 7.639062 ATGGGAGGTTAGATGTGATATTCTT 57.361 36.000 0.00 0.00 0.00 2.52
656 657 8.742125 ATGGGAGGTTAGATGTGATATTCTTA 57.258 34.615 0.00 0.00 0.00 2.10
657 658 8.561536 TGGGAGGTTAGATGTGATATTCTTAA 57.438 34.615 0.00 0.00 0.00 1.85
658 659 8.998814 TGGGAGGTTAGATGTGATATTCTTAAA 58.001 33.333 0.00 0.00 0.00 1.52
659 660 9.847224 GGGAGGTTAGATGTGATATTCTTAAAA 57.153 33.333 0.00 0.00 0.00 1.52
729 730 5.369699 TCTGAAATCGAATCTATTTCCCCCT 59.630 40.000 14.88 0.00 40.89 4.79
786 1106 9.757227 TTTGAACGAAATCACAATTTTAATCCT 57.243 25.926 0.00 0.00 35.21 3.24
800 1120 5.766150 TTTAATCCTAAACGATGGCCATG 57.234 39.130 26.56 17.71 0.00 3.66
819 1139 5.591099 CCATGCAGCCGAATTAAAAATACT 58.409 37.500 0.00 0.00 0.00 2.12
820 1140 5.459762 CCATGCAGCCGAATTAAAAATACTG 59.540 40.000 0.00 0.00 0.00 2.74
822 1142 3.796717 GCAGCCGAATTAAAAATACTGCC 59.203 43.478 10.41 0.00 42.58 4.85
823 1143 4.676723 GCAGCCGAATTAAAAATACTGCCA 60.677 41.667 10.41 0.00 42.58 4.92
824 1144 5.406649 CAGCCGAATTAAAAATACTGCCAA 58.593 37.500 0.00 0.00 0.00 4.52
888 1237 0.766288 AGCAGGAGAGGGCCCTTATC 60.766 60.000 29.39 25.88 0.00 1.75
904 1253 0.609151 TATCCTGCGTTTCGTTCCCA 59.391 50.000 0.00 0.00 0.00 4.37
905 1254 0.035439 ATCCTGCGTTTCGTTCCCAT 60.035 50.000 0.00 0.00 0.00 4.00
906 1255 0.250553 TCCTGCGTTTCGTTCCCATT 60.251 50.000 0.00 0.00 0.00 3.16
907 1256 0.168128 CCTGCGTTTCGTTCCCATTC 59.832 55.000 0.00 0.00 0.00 2.67
908 1257 0.168128 CTGCGTTTCGTTCCCATTCC 59.832 55.000 0.00 0.00 0.00 3.01
909 1258 1.238625 TGCGTTTCGTTCCCATTCCC 61.239 55.000 0.00 0.00 0.00 3.97
910 1259 1.929806 GCGTTTCGTTCCCATTCCCC 61.930 60.000 0.00 0.00 0.00 4.81
911 1260 1.310216 CGTTTCGTTCCCATTCCCCC 61.310 60.000 0.00 0.00 0.00 5.40
925 1274 4.637771 CCCCCATTCCGTTGTCTC 57.362 61.111 0.00 0.00 0.00 3.36
926 1275 1.682849 CCCCCATTCCGTTGTCTCA 59.317 57.895 0.00 0.00 0.00 3.27
927 1276 0.037590 CCCCCATTCCGTTGTCTCAA 59.962 55.000 0.00 0.00 0.00 3.02
928 1277 1.546773 CCCCCATTCCGTTGTCTCAAA 60.547 52.381 0.00 0.00 0.00 2.69
929 1278 2.235016 CCCCATTCCGTTGTCTCAAAA 58.765 47.619 0.00 0.00 0.00 2.44
930 1279 2.625790 CCCCATTCCGTTGTCTCAAAAA 59.374 45.455 0.00 0.00 0.00 1.94
976 1354 4.415150 CAGAGCCGCACCACCCAT 62.415 66.667 0.00 0.00 0.00 4.00
1040 1440 1.392710 ATACCCGCCGTCAGGAAGAG 61.393 60.000 0.00 0.00 41.02 2.85
1084 1484 4.020617 CCGCACCCAAGAGGCTCA 62.021 66.667 18.26 0.00 40.58 4.26
1579 2036 2.266055 CAACTCTCCTCGTGGCCC 59.734 66.667 0.00 0.00 0.00 5.80
1662 2119 4.569023 CTCATCCTGCGGCGCGTA 62.569 66.667 28.09 15.29 0.00 4.42
1746 2203 7.921786 TGAATTGAAGGAAATTCGTGATACT 57.078 32.000 5.47 0.00 45.55 2.12
1948 2417 1.198094 TTTGTCTCCCCGCATCTCCA 61.198 55.000 0.00 0.00 0.00 3.86
1992 2467 4.392138 GTCTTCCAGGTAGCAACAACATAC 59.608 45.833 0.00 0.00 0.00 2.39
2036 2526 6.533723 ACAGATGCAGCATCATTACATTTTTG 59.466 34.615 32.41 20.81 42.72 2.44
2140 2637 2.218603 GTTTTGGCTCTCGAGTTTCCA 58.781 47.619 13.13 14.53 0.00 3.53
2279 2780 8.749026 ATTTGATTCTGCAGAGACAATAATCT 57.251 30.769 26.34 13.56 0.00 2.40
2280 2781 7.549615 TTGATTCTGCAGAGACAATAATCTG 57.450 36.000 23.88 0.00 44.70 2.90
2281 2782 6.647229 TGATTCTGCAGAGACAATAATCTGT 58.353 36.000 17.43 0.00 43.94 3.41
2531 3040 5.473504 GCTGAAGGAACTCAAATTTGGAGTA 59.526 40.000 17.90 0.00 44.50 2.59
2738 3280 6.891624 TGACGATATTTCAGAATAAGCATGC 58.108 36.000 10.51 10.51 31.82 4.06
2776 3331 5.008613 GTGACTTTGCAGACAAGGTTGATTA 59.991 40.000 1.91 0.00 45.23 1.75
2853 3410 9.226606 CACTGTATTTTGTCTGGTCCTTAAATA 57.773 33.333 0.00 0.00 0.00 1.40
2973 3540 3.879892 GGAAAGATTGTGGATGCTACCTC 59.120 47.826 0.00 0.00 0.00 3.85
2998 3565 7.026562 CGATTGTTCCAGTTGCATTATGTTTA 58.973 34.615 0.00 0.00 0.00 2.01
2999 3566 7.701924 CGATTGTTCCAGTTGCATTATGTTTAT 59.298 33.333 0.00 0.00 0.00 1.40
3082 3659 4.923281 AGTTGCTTTGTTTCAGTCAACAAC 59.077 37.500 0.00 0.00 44.51 3.32
3095 3672 4.685628 CAGTCAACAACTTGTGCTTGTTTT 59.314 37.500 0.00 0.00 39.34 2.43
3102 3679 5.049749 ACAACTTGTGCTTGTTTTGAAAACC 60.050 36.000 17.21 3.80 0.00 3.27
3116 3693 7.550906 TGTTTTGAAAACCCAACTATCCTTTTG 59.449 33.333 17.21 0.00 0.00 2.44
3153 3730 5.049680 TCCAGCTTTAAGTGCTACTTTTTCG 60.050 40.000 6.82 0.00 39.51 3.46
3161 3738 1.318251 GCTACTTTTTCGTTGCTGCG 58.682 50.000 0.00 0.00 33.77 5.18
3174 3751 1.236616 TGCTGCGAATGGTCAACCTG 61.237 55.000 0.10 0.00 36.82 4.00
3256 3833 5.694231 TTTCTGATCTCACACACAAATGG 57.306 39.130 0.00 0.00 0.00 3.16
3260 3837 4.002982 TGATCTCACACACAAATGGTAGC 58.997 43.478 0.00 0.00 0.00 3.58
3282 3859 6.166982 AGCACTACATTTGAAGACCTTCTAC 58.833 40.000 10.67 0.00 40.14 2.59
3290 3867 4.436242 TGAAGACCTTCTACTTACAGCG 57.564 45.455 10.67 0.00 40.14 5.18
3328 3905 8.816640 TCATTTTCCTTACAAAATCAGAAAGC 57.183 30.769 0.00 0.00 34.37 3.51
3334 3911 7.083858 TCCTTACAAAATCAGAAAGCGATTTG 58.916 34.615 2.01 0.00 41.16 2.32
3343 3920 4.454504 TCAGAAAGCGATTTGTTTCCTACC 59.545 41.667 2.01 0.00 33.84 3.18
3351 3928 5.560567 GCGATTTGTTTCCTACCGTAAAACA 60.561 40.000 4.96 4.96 40.18 2.83
3353 3930 7.079475 CGATTTGTTTCCTACCGTAAAACATT 58.921 34.615 8.63 2.37 41.16 2.71
3354 3931 7.060174 CGATTTGTTTCCTACCGTAAAACATTG 59.940 37.037 8.63 0.00 41.16 2.82
3355 3932 5.692613 TGTTTCCTACCGTAAAACATTGG 57.307 39.130 4.96 0.00 37.82 3.16
3364 3941 3.682377 CCGTAAAACATTGGAATTTGGCC 59.318 43.478 0.00 0.00 0.00 5.36
3395 3972 3.317149 GTGTGTTTCTTACCCTGGGTTTC 59.683 47.826 26.00 8.87 37.09 2.78
3437 4014 1.450025 CAGGCCCCTTCGTTTTCTAC 58.550 55.000 0.00 0.00 0.00 2.59
3469 4046 2.681848 GCCCAGATCATACAGCATATGC 59.318 50.000 20.36 20.36 42.49 3.14
3487 4064 2.799017 TGCTTGAGCCAGATCAACATT 58.201 42.857 0.00 0.00 41.18 2.71
3521 4181 8.622157 TGATACTATACTTCTTCAGTTCTTCCG 58.378 37.037 0.00 0.00 36.88 4.30
3528 4188 2.296471 TCTTCAGTTCTTCCGACCTGTC 59.704 50.000 0.00 0.00 0.00 3.51
3545 4205 2.104792 CTGTCCAGTTCCAAGTGAGGAA 59.895 50.000 0.00 0.00 45.12 3.36
3585 4247 2.969443 ATCCGTTTTTCAGCAAGTCG 57.031 45.000 0.00 0.00 0.00 4.18
3586 4248 1.658994 TCCGTTTTTCAGCAAGTCGT 58.341 45.000 0.00 0.00 0.00 4.34
3591 4253 3.960002 CGTTTTTCAGCAAGTCGTTACAG 59.040 43.478 0.00 0.00 0.00 2.74
3593 4255 2.902705 TTCAGCAAGTCGTTACAGGT 57.097 45.000 0.00 0.00 0.00 4.00
3606 4268 9.618890 AAGTCGTTACAGGTAGTAGTATATTGA 57.381 33.333 0.00 0.00 33.43 2.57
3615 4277 9.193133 CAGGTAGTAGTATATTGATGTTTTCCG 57.807 37.037 0.00 0.00 0.00 4.30
3616 4278 8.921205 AGGTAGTAGTATATTGATGTTTTCCGT 58.079 33.333 0.00 0.00 0.00 4.69
3617 4279 9.189723 GGTAGTAGTATATTGATGTTTTCCGTC 57.810 37.037 0.00 0.00 0.00 4.79
3618 4280 9.962783 GTAGTAGTATATTGATGTTTTCCGTCT 57.037 33.333 0.00 0.00 0.00 4.18
3620 4282 8.692710 AGTAGTATATTGATGTTTTCCGTCTCA 58.307 33.333 0.00 0.00 0.00 3.27
3621 4283 9.309516 GTAGTATATTGATGTTTTCCGTCTCAA 57.690 33.333 0.00 0.00 0.00 3.02
3622 4284 8.197988 AGTATATTGATGTTTTCCGTCTCAAC 57.802 34.615 0.00 0.00 0.00 3.18
3623 4285 8.041323 AGTATATTGATGTTTTCCGTCTCAACT 58.959 33.333 0.00 0.00 0.00 3.16
3624 4286 5.613358 ATTGATGTTTTCCGTCTCAACTC 57.387 39.130 0.00 0.00 0.00 3.01
3625 4287 3.399330 TGATGTTTTCCGTCTCAACTCC 58.601 45.455 0.00 0.00 0.00 3.85
3626 4288 3.071023 TGATGTTTTCCGTCTCAACTCCT 59.929 43.478 0.00 0.00 0.00 3.69
3627 4289 3.107642 TGTTTTCCGTCTCAACTCCTC 57.892 47.619 0.00 0.00 0.00 3.71
3628 4290 2.432874 TGTTTTCCGTCTCAACTCCTCA 59.567 45.455 0.00 0.00 0.00 3.86
3629 4291 3.060602 GTTTTCCGTCTCAACTCCTCAG 58.939 50.000 0.00 0.00 0.00 3.35
3630 4292 2.287977 TTCCGTCTCAACTCCTCAGA 57.712 50.000 0.00 0.00 0.00 3.27
3631 4293 1.535833 TCCGTCTCAACTCCTCAGAC 58.464 55.000 0.00 0.00 34.36 3.51
3632 4294 1.202891 TCCGTCTCAACTCCTCAGACA 60.203 52.381 0.00 0.00 37.05 3.41
3633 4295 1.821753 CCGTCTCAACTCCTCAGACAT 59.178 52.381 0.00 0.00 37.05 3.06
3634 4296 2.232452 CCGTCTCAACTCCTCAGACATT 59.768 50.000 0.00 0.00 37.05 2.71
3635 4297 3.444034 CCGTCTCAACTCCTCAGACATTA 59.556 47.826 0.00 0.00 37.05 1.90
3636 4298 4.082190 CCGTCTCAACTCCTCAGACATTAA 60.082 45.833 0.00 0.00 37.05 1.40
3637 4299 5.394663 CCGTCTCAACTCCTCAGACATTAAT 60.395 44.000 0.00 0.00 37.05 1.40
3638 4300 6.102663 CGTCTCAACTCCTCAGACATTAATT 58.897 40.000 0.00 0.00 37.05 1.40
3639 4301 6.035435 CGTCTCAACTCCTCAGACATTAATTG 59.965 42.308 0.00 0.00 37.05 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.352784 CTTATAATTTGATGATCGAGTCTCCTC 57.647 37.037 0.00 0.00 0.00 3.71
1 2 8.865090 ACTTATAATTTGATGATCGAGTCTCCT 58.135 33.333 0.00 0.00 0.00 3.69
2 3 9.482627 AACTTATAATTTGATGATCGAGTCTCC 57.517 33.333 0.00 0.00 0.00 3.71
19 20 9.621629 TGGTTCCGTATGAAATGAACTTATAAT 57.378 29.630 0.00 0.00 37.74 1.28
20 21 9.104965 CTGGTTCCGTATGAAATGAACTTATAA 57.895 33.333 0.00 0.00 37.74 0.98
21 22 8.479689 TCTGGTTCCGTATGAAATGAACTTATA 58.520 33.333 0.00 0.00 37.74 0.98
22 23 7.280205 GTCTGGTTCCGTATGAAATGAACTTAT 59.720 37.037 0.00 0.00 37.74 1.73
23 24 6.592607 GTCTGGTTCCGTATGAAATGAACTTA 59.407 38.462 0.00 0.00 37.74 2.24
24 25 5.411669 GTCTGGTTCCGTATGAAATGAACTT 59.588 40.000 0.00 0.00 37.74 2.66
25 26 4.935808 GTCTGGTTCCGTATGAAATGAACT 59.064 41.667 0.00 0.00 37.74 3.01
26 27 4.094442 GGTCTGGTTCCGTATGAAATGAAC 59.906 45.833 0.00 0.00 37.08 3.18
27 28 4.258543 GGTCTGGTTCCGTATGAAATGAA 58.741 43.478 0.00 0.00 33.94 2.57
28 29 3.677700 CGGTCTGGTTCCGTATGAAATGA 60.678 47.826 0.00 0.00 42.62 2.57
29 30 2.607635 CGGTCTGGTTCCGTATGAAATG 59.392 50.000 0.00 0.00 42.62 2.32
30 31 2.901249 CGGTCTGGTTCCGTATGAAAT 58.099 47.619 0.00 0.00 42.62 2.17
31 32 2.373540 CGGTCTGGTTCCGTATGAAA 57.626 50.000 0.00 0.00 42.62 2.69
39 40 0.889186 AATGTGCACGGTCTGGTTCC 60.889 55.000 13.13 0.00 0.00 3.62
40 41 0.951558 AAATGTGCACGGTCTGGTTC 59.048 50.000 13.13 0.00 0.00 3.62
41 42 1.398692 AAAATGTGCACGGTCTGGTT 58.601 45.000 13.13 0.00 0.00 3.67
42 43 1.398692 AAAAATGTGCACGGTCTGGT 58.601 45.000 13.13 0.00 0.00 4.00
43 44 3.848272 ATAAAAATGTGCACGGTCTGG 57.152 42.857 13.13 0.00 0.00 3.86
44 45 8.394877 TCTTATAATAAAAATGTGCACGGTCTG 58.605 33.333 13.13 0.00 0.00 3.51
45 46 8.500753 TCTTATAATAAAAATGTGCACGGTCT 57.499 30.769 13.13 0.00 0.00 3.85
46 47 9.221775 CTTCTTATAATAAAAATGTGCACGGTC 57.778 33.333 13.13 0.00 0.00 4.79
47 48 8.188139 CCTTCTTATAATAAAAATGTGCACGGT 58.812 33.333 13.13 0.00 0.00 4.83
48 49 7.647715 CCCTTCTTATAATAAAAATGTGCACGG 59.352 37.037 13.13 0.00 0.00 4.94
49 50 7.647715 CCCCTTCTTATAATAAAAATGTGCACG 59.352 37.037 13.13 0.00 0.00 5.34
50 51 8.474831 ACCCCTTCTTATAATAAAAATGTGCAC 58.525 33.333 10.75 10.75 0.00 4.57
51 52 8.602472 ACCCCTTCTTATAATAAAAATGTGCA 57.398 30.769 0.00 0.00 0.00 4.57
52 53 8.691797 TGACCCCTTCTTATAATAAAAATGTGC 58.308 33.333 0.00 0.00 0.00 4.57
57 58 9.908747 TCGAATGACCCCTTCTTATAATAAAAA 57.091 29.630 0.00 0.00 0.00 1.94
58 59 9.555727 CTCGAATGACCCCTTCTTATAATAAAA 57.444 33.333 0.00 0.00 0.00 1.52
59 60 7.660208 GCTCGAATGACCCCTTCTTATAATAAA 59.340 37.037 0.00 0.00 0.00 1.40
60 61 7.159372 GCTCGAATGACCCCTTCTTATAATAA 58.841 38.462 0.00 0.00 0.00 1.40
61 62 6.295688 GGCTCGAATGACCCCTTCTTATAATA 60.296 42.308 0.00 0.00 0.00 0.98
62 63 5.513267 GGCTCGAATGACCCCTTCTTATAAT 60.513 44.000 0.00 0.00 0.00 1.28
63 64 4.202326 GGCTCGAATGACCCCTTCTTATAA 60.202 45.833 0.00 0.00 0.00 0.98
64 65 3.323979 GGCTCGAATGACCCCTTCTTATA 59.676 47.826 0.00 0.00 0.00 0.98
65 66 2.104963 GGCTCGAATGACCCCTTCTTAT 59.895 50.000 0.00 0.00 0.00 1.73
66 67 1.485066 GGCTCGAATGACCCCTTCTTA 59.515 52.381 0.00 0.00 0.00 2.10
67 68 0.253327 GGCTCGAATGACCCCTTCTT 59.747 55.000 0.00 0.00 0.00 2.52
68 69 0.618968 AGGCTCGAATGACCCCTTCT 60.619 55.000 0.00 0.00 0.00 2.85
69 70 1.120530 TAGGCTCGAATGACCCCTTC 58.879 55.000 0.00 0.00 0.00 3.46
70 71 1.417890 CATAGGCTCGAATGACCCCTT 59.582 52.381 0.00 0.00 0.00 3.95
71 72 1.051812 CATAGGCTCGAATGACCCCT 58.948 55.000 0.00 0.00 0.00 4.79
72 73 1.048601 TCATAGGCTCGAATGACCCC 58.951 55.000 0.00 0.00 0.00 4.95
73 74 2.910688 TTCATAGGCTCGAATGACCC 57.089 50.000 0.00 0.00 31.99 4.46
74 75 5.409826 CCTATTTTCATAGGCTCGAATGACC 59.590 44.000 0.00 0.00 44.71 4.02
75 76 6.473397 CCTATTTTCATAGGCTCGAATGAC 57.527 41.667 0.00 0.00 44.71 3.06
101 102 8.529476 ACGTAGGAATTTCTATGTAAACAGAGT 58.471 33.333 15.81 0.00 37.61 3.24
102 103 8.928270 ACGTAGGAATTTCTATGTAAACAGAG 57.072 34.615 15.81 0.00 37.61 3.35
103 104 9.362539 GAACGTAGGAATTTCTATGTAAACAGA 57.637 33.333 17.36 0.00 38.20 3.41
104 105 9.367444 AGAACGTAGGAATTTCTATGTAAACAG 57.633 33.333 17.36 0.00 38.20 3.16
105 106 9.715121 AAGAACGTAGGAATTTCTATGTAAACA 57.285 29.630 17.36 0.00 38.20 2.83
110 111 9.886132 AATGTAAGAACGTAGGAATTTCTATGT 57.114 29.630 12.22 12.22 40.15 2.29
120 121 9.412460 TCCTAAATAGAATGTAAGAACGTAGGA 57.588 33.333 0.00 0.00 0.00 2.94
141 142 9.892444 TCTGATTACACCTATTCCTAATCCTAA 57.108 33.333 0.00 0.00 0.00 2.69
142 143 9.310449 GTCTGATTACACCTATTCCTAATCCTA 57.690 37.037 0.00 0.00 0.00 2.94
143 144 7.235812 GGTCTGATTACACCTATTCCTAATCCT 59.764 40.741 0.00 0.00 0.00 3.24
144 145 7.235812 AGGTCTGATTACACCTATTCCTAATCC 59.764 40.741 0.00 0.00 0.00 3.01
145 146 8.091449 CAGGTCTGATTACACCTATTCCTAATC 58.909 40.741 0.00 0.00 0.00 1.75
146 147 7.473511 GCAGGTCTGATTACACCTATTCCTAAT 60.474 40.741 1.65 0.00 0.00 1.73
147 148 6.183360 GCAGGTCTGATTACACCTATTCCTAA 60.183 42.308 1.65 0.00 0.00 2.69
148 149 5.304614 GCAGGTCTGATTACACCTATTCCTA 59.695 44.000 1.65 0.00 0.00 2.94
149 150 4.101741 GCAGGTCTGATTACACCTATTCCT 59.898 45.833 1.65 0.00 0.00 3.36
150 151 4.101741 AGCAGGTCTGATTACACCTATTCC 59.898 45.833 1.65 0.00 0.00 3.01
151 152 5.283457 AGCAGGTCTGATTACACCTATTC 57.717 43.478 1.65 0.00 0.00 1.75
152 153 5.700402 AAGCAGGTCTGATTACACCTATT 57.300 39.130 0.00 0.00 37.44 1.73
153 154 5.700402 AAAGCAGGTCTGATTACACCTAT 57.300 39.130 1.74 0.00 38.36 2.57
154 155 5.012664 TCAAAAGCAGGTCTGATTACACCTA 59.987 40.000 1.74 0.00 38.36 3.08
155 156 4.074970 CAAAAGCAGGTCTGATTACACCT 58.925 43.478 1.74 0.00 38.36 4.00
156 157 4.072131 TCAAAAGCAGGTCTGATTACACC 58.928 43.478 1.74 0.00 38.36 4.16
157 158 4.515191 TGTCAAAAGCAGGTCTGATTACAC 59.485 41.667 1.74 1.12 38.36 2.90
158 159 4.713553 TGTCAAAAGCAGGTCTGATTACA 58.286 39.130 1.74 1.11 38.36 2.41
159 160 5.886960 ATGTCAAAAGCAGGTCTGATTAC 57.113 39.130 1.74 0.00 38.36 1.89
160 161 7.568349 AGATATGTCAAAAGCAGGTCTGATTA 58.432 34.615 1.74 0.00 38.36 1.75
161 162 6.421485 AGATATGTCAAAAGCAGGTCTGATT 58.579 36.000 1.65 0.00 41.42 2.57
162 163 5.999044 AGATATGTCAAAAGCAGGTCTGAT 58.001 37.500 1.65 0.00 0.00 2.90
163 164 5.426689 AGATATGTCAAAAGCAGGTCTGA 57.573 39.130 1.65 0.00 0.00 3.27
164 165 6.426328 GGATAGATATGTCAAAAGCAGGTCTG 59.574 42.308 0.00 0.00 0.00 3.51
165 166 6.328672 AGGATAGATATGTCAAAAGCAGGTCT 59.671 38.462 0.00 0.00 0.00 3.85
166 167 6.529220 AGGATAGATATGTCAAAAGCAGGTC 58.471 40.000 0.00 0.00 0.00 3.85
167 168 6.506538 AGGATAGATATGTCAAAAGCAGGT 57.493 37.500 0.00 0.00 0.00 4.00
191 192 9.995594 AGGTGCATATGGTATCCAAATAATAAT 57.004 29.630 4.56 0.00 36.95 1.28
192 193 9.461312 GAGGTGCATATGGTATCCAAATAATAA 57.539 33.333 4.56 0.00 36.95 1.40
193 194 8.835734 AGAGGTGCATATGGTATCCAAATAATA 58.164 33.333 4.56 0.00 36.95 0.98
194 195 7.702785 AGAGGTGCATATGGTATCCAAATAAT 58.297 34.615 4.56 0.00 36.95 1.28
195 196 7.090319 AGAGGTGCATATGGTATCCAAATAA 57.910 36.000 4.56 0.00 36.95 1.40
196 197 6.702449 AGAGGTGCATATGGTATCCAAATA 57.298 37.500 4.56 0.00 36.95 1.40
197 198 5.589367 AGAGGTGCATATGGTATCCAAAT 57.411 39.130 4.56 0.00 36.95 2.32
198 199 5.387113 AAGAGGTGCATATGGTATCCAAA 57.613 39.130 4.56 0.00 36.95 3.28
199 200 5.132502 CAAAGAGGTGCATATGGTATCCAA 58.867 41.667 4.56 0.00 36.95 3.53
200 201 4.446167 CCAAAGAGGTGCATATGGTATCCA 60.446 45.833 4.56 0.00 38.19 3.41
201 202 4.074970 CCAAAGAGGTGCATATGGTATCC 58.925 47.826 4.56 0.00 0.00 2.59
202 203 4.074970 CCCAAAGAGGTGCATATGGTATC 58.925 47.826 4.56 0.00 34.66 2.24
203 204 3.751893 GCCCAAAGAGGTGCATATGGTAT 60.752 47.826 4.56 0.00 34.73 2.73
204 205 2.422803 GCCCAAAGAGGTGCATATGGTA 60.423 50.000 4.56 0.00 34.73 3.25
205 206 1.686115 GCCCAAAGAGGTGCATATGGT 60.686 52.381 4.56 0.00 34.73 3.55
206 207 1.035139 GCCCAAAGAGGTGCATATGG 58.965 55.000 4.56 0.00 34.73 2.74
207 208 2.062971 AGCCCAAAGAGGTGCATATG 57.937 50.000 0.00 0.00 36.41 1.78
208 209 2.243221 AGAAGCCCAAAGAGGTGCATAT 59.757 45.455 0.00 0.00 36.41 1.78
209 210 1.635487 AGAAGCCCAAAGAGGTGCATA 59.365 47.619 0.00 0.00 36.41 3.14
210 211 0.407139 AGAAGCCCAAAGAGGTGCAT 59.593 50.000 0.00 0.00 36.41 3.96
211 212 1.064003 TAGAAGCCCAAAGAGGTGCA 58.936 50.000 0.00 0.00 36.41 4.57
212 213 2.424956 CAATAGAAGCCCAAAGAGGTGC 59.575 50.000 0.00 0.00 34.66 5.01
213 214 3.955471 TCAATAGAAGCCCAAAGAGGTG 58.045 45.455 0.00 0.00 34.66 4.00
214 215 4.657814 TTCAATAGAAGCCCAAAGAGGT 57.342 40.909 0.00 0.00 34.66 3.85
215 216 4.274459 CGATTCAATAGAAGCCCAAAGAGG 59.726 45.833 0.00 0.00 36.84 3.69
216 217 5.118990 TCGATTCAATAGAAGCCCAAAGAG 58.881 41.667 0.00 0.00 36.84 2.85
217 218 5.097742 TCGATTCAATAGAAGCCCAAAGA 57.902 39.130 0.00 0.00 36.84 2.52
218 219 5.818136 TTCGATTCAATAGAAGCCCAAAG 57.182 39.130 0.00 0.00 36.84 2.77
219 220 6.582677 TTTTCGATTCAATAGAAGCCCAAA 57.417 33.333 0.00 0.00 36.84 3.28
220 221 6.582677 TTTTTCGATTCAATAGAAGCCCAA 57.417 33.333 0.00 0.00 36.84 4.12
221 222 6.773976 ATTTTTCGATTCAATAGAAGCCCA 57.226 33.333 0.00 0.00 36.84 5.36
222 223 6.476706 CCAATTTTTCGATTCAATAGAAGCCC 59.523 38.462 0.00 0.00 36.84 5.19
223 224 7.257722 TCCAATTTTTCGATTCAATAGAAGCC 58.742 34.615 0.00 0.00 36.84 4.35
224 225 8.862550 ATCCAATTTTTCGATTCAATAGAAGC 57.137 30.769 0.00 0.00 37.14 3.86
230 231 9.874205 ATGTACAATCCAATTTTTCGATTCAAT 57.126 25.926 0.00 0.00 0.00 2.57
231 232 9.352784 GATGTACAATCCAATTTTTCGATTCAA 57.647 29.630 0.00 0.00 0.00 2.69
232 233 8.739039 AGATGTACAATCCAATTTTTCGATTCA 58.261 29.630 0.00 0.00 0.00 2.57
233 234 9.573133 AAGATGTACAATCCAATTTTTCGATTC 57.427 29.630 0.00 0.00 0.00 2.52
234 235 9.927668 AAAGATGTACAATCCAATTTTTCGATT 57.072 25.926 0.00 0.00 0.00 3.34
235 236 9.573133 GAAAGATGTACAATCCAATTTTTCGAT 57.427 29.630 0.00 0.00 0.00 3.59
236 237 8.572185 TGAAAGATGTACAATCCAATTTTTCGA 58.428 29.630 0.00 0.00 0.00 3.71
237 238 8.741101 TGAAAGATGTACAATCCAATTTTTCG 57.259 30.769 0.00 0.00 0.00 3.46
245 246 9.904198 TCAATAAGATGAAAGATGTACAATCCA 57.096 29.630 0.00 0.00 0.00 3.41
263 264 9.619316 CGTTGAAATGTACCAAAATCAATAAGA 57.381 29.630 0.00 0.00 0.00 2.10
264 265 8.859156 CCGTTGAAATGTACCAAAATCAATAAG 58.141 33.333 0.00 0.00 0.00 1.73
265 266 8.577296 TCCGTTGAAATGTACCAAAATCAATAA 58.423 29.630 0.00 0.00 0.00 1.40
266 267 8.112016 TCCGTTGAAATGTACCAAAATCAATA 57.888 30.769 0.00 0.00 0.00 1.90
267 268 6.987386 TCCGTTGAAATGTACCAAAATCAAT 58.013 32.000 0.00 0.00 0.00 2.57
268 269 6.392625 TCCGTTGAAATGTACCAAAATCAA 57.607 33.333 0.00 0.00 0.00 2.57
269 270 6.582677 ATCCGTTGAAATGTACCAAAATCA 57.417 33.333 0.00 0.00 0.00 2.57
270 271 9.019764 CATTATCCGTTGAAATGTACCAAAATC 57.980 33.333 0.00 0.00 0.00 2.17
271 272 7.491048 GCATTATCCGTTGAAATGTACCAAAAT 59.509 33.333 0.00 0.00 33.96 1.82
272 273 6.809196 GCATTATCCGTTGAAATGTACCAAAA 59.191 34.615 0.00 0.00 33.96 2.44
273 274 6.071896 TGCATTATCCGTTGAAATGTACCAAA 60.072 34.615 0.00 0.00 33.96 3.28
274 275 5.416013 TGCATTATCCGTTGAAATGTACCAA 59.584 36.000 0.00 0.00 33.96 3.67
275 276 4.944317 TGCATTATCCGTTGAAATGTACCA 59.056 37.500 0.00 0.00 33.96 3.25
276 277 5.493133 TGCATTATCCGTTGAAATGTACC 57.507 39.130 0.00 0.00 33.96 3.34
277 278 7.700234 TGATTTGCATTATCCGTTGAAATGTAC 59.300 33.333 6.82 0.00 33.96 2.90
278 279 7.766283 TGATTTGCATTATCCGTTGAAATGTA 58.234 30.769 6.82 0.00 33.96 2.29
279 280 6.629128 TGATTTGCATTATCCGTTGAAATGT 58.371 32.000 6.82 0.00 33.96 2.71
280 281 7.306925 CCATGATTTGCATTATCCGTTGAAATG 60.307 37.037 0.00 0.00 34.15 2.32
281 282 6.702723 CCATGATTTGCATTATCCGTTGAAAT 59.297 34.615 0.00 0.00 34.15 2.17
282 283 6.041511 CCATGATTTGCATTATCCGTTGAAA 58.958 36.000 0.00 0.00 34.15 2.69
283 284 5.359292 TCCATGATTTGCATTATCCGTTGAA 59.641 36.000 0.00 0.00 34.15 2.69
284 285 4.886489 TCCATGATTTGCATTATCCGTTGA 59.114 37.500 0.00 0.00 34.15 3.18
285 286 5.185668 TCCATGATTTGCATTATCCGTTG 57.814 39.130 0.00 3.40 34.15 4.10
286 287 5.279106 CCATCCATGATTTGCATTATCCGTT 60.279 40.000 0.00 0.00 34.15 4.44
287 288 4.219070 CCATCCATGATTTGCATTATCCGT 59.781 41.667 0.00 0.00 34.15 4.69
288 289 4.381185 CCCATCCATGATTTGCATTATCCG 60.381 45.833 0.00 0.08 34.15 4.18
289 290 4.529377 ACCCATCCATGATTTGCATTATCC 59.471 41.667 0.00 0.00 34.15 2.59
290 291 5.479375 AGACCCATCCATGATTTGCATTATC 59.521 40.000 0.00 0.00 34.15 1.75
291 292 5.245301 CAGACCCATCCATGATTTGCATTAT 59.755 40.000 0.00 0.00 34.15 1.28
292 293 4.585581 CAGACCCATCCATGATTTGCATTA 59.414 41.667 0.00 0.00 34.15 1.90
293 294 3.386726 CAGACCCATCCATGATTTGCATT 59.613 43.478 0.00 0.00 34.15 3.56
294 295 2.963101 CAGACCCATCCATGATTTGCAT 59.037 45.455 0.00 0.00 37.85 3.96
295 296 2.291735 ACAGACCCATCCATGATTTGCA 60.292 45.455 0.00 0.00 0.00 4.08
296 297 2.360165 GACAGACCCATCCATGATTTGC 59.640 50.000 0.00 0.00 0.00 3.68
297 298 3.894759 AGACAGACCCATCCATGATTTG 58.105 45.455 0.00 0.00 0.00 2.32
298 299 4.103785 CCTAGACAGACCCATCCATGATTT 59.896 45.833 0.00 0.00 0.00 2.17
299 300 3.649981 CCTAGACAGACCCATCCATGATT 59.350 47.826 0.00 0.00 0.00 2.57
300 301 3.116590 TCCTAGACAGACCCATCCATGAT 60.117 47.826 0.00 0.00 0.00 2.45
301 302 2.247372 TCCTAGACAGACCCATCCATGA 59.753 50.000 0.00 0.00 0.00 3.07
302 303 2.366916 GTCCTAGACAGACCCATCCATG 59.633 54.545 0.00 0.00 32.09 3.66
303 304 2.023015 TGTCCTAGACAGACCCATCCAT 60.023 50.000 0.00 0.00 37.67 3.41
304 305 1.361197 TGTCCTAGACAGACCCATCCA 59.639 52.381 0.00 0.00 37.67 3.41
305 306 1.757699 GTGTCCTAGACAGACCCATCC 59.242 57.143 0.00 0.00 43.57 3.51
306 307 2.457598 TGTGTCCTAGACAGACCCATC 58.542 52.381 0.00 0.00 43.57 3.51
307 308 2.623418 TGTGTCCTAGACAGACCCAT 57.377 50.000 0.00 0.00 43.57 4.00
308 309 2.043115 AGATGTGTCCTAGACAGACCCA 59.957 50.000 0.00 0.00 43.57 4.51
309 310 2.741145 AGATGTGTCCTAGACAGACCC 58.259 52.381 0.00 0.00 43.57 4.46
310 311 4.783055 TCTAGATGTGTCCTAGACAGACC 58.217 47.826 0.00 0.00 43.57 3.85
311 312 6.312399 CATCTAGATGTGTCCTAGACAGAC 57.688 45.833 22.42 0.00 43.57 3.51
336 337 8.758829 TCAGGTTAGATGTGACATAGTTATGTT 58.241 33.333 0.00 0.00 46.20 2.71
338 339 9.201127 CATCAGGTTAGATGTGACATAGTTATG 57.799 37.037 0.00 0.00 40.35 1.90
352 353 8.938883 ACAAATATAGTGGACATCAGGTTAGAT 58.061 33.333 0.00 0.00 0.00 1.98
353 354 8.204160 CACAAATATAGTGGACATCAGGTTAGA 58.796 37.037 1.30 0.00 33.43 2.10
354 355 8.370493 CACAAATATAGTGGACATCAGGTTAG 57.630 38.462 1.30 0.00 33.43 2.34
404 405 5.669164 AAGGTAGCAACAAGGAACAAAAA 57.331 34.783 0.00 0.00 0.00 1.94
405 406 6.969993 ATAAGGTAGCAACAAGGAACAAAA 57.030 33.333 0.00 0.00 0.00 2.44
406 407 6.969993 AATAAGGTAGCAACAAGGAACAAA 57.030 33.333 0.00 0.00 0.00 2.83
407 408 6.322712 ACAAATAAGGTAGCAACAAGGAACAA 59.677 34.615 0.00 0.00 0.00 2.83
408 409 5.830991 ACAAATAAGGTAGCAACAAGGAACA 59.169 36.000 0.00 0.00 0.00 3.18
409 410 6.149633 CACAAATAAGGTAGCAACAAGGAAC 58.850 40.000 0.00 0.00 0.00 3.62
410 411 5.242838 CCACAAATAAGGTAGCAACAAGGAA 59.757 40.000 0.00 0.00 0.00 3.36
411 412 4.764823 CCACAAATAAGGTAGCAACAAGGA 59.235 41.667 0.00 0.00 0.00 3.36
412 413 4.082245 CCCACAAATAAGGTAGCAACAAGG 60.082 45.833 0.00 0.00 0.00 3.61
413 414 4.764823 TCCCACAAATAAGGTAGCAACAAG 59.235 41.667 0.00 0.00 0.00 3.16
414 415 4.730966 TCCCACAAATAAGGTAGCAACAA 58.269 39.130 0.00 0.00 0.00 2.83
415 416 4.331968 CTCCCACAAATAAGGTAGCAACA 58.668 43.478 0.00 0.00 0.00 3.33
416 417 3.128764 GCTCCCACAAATAAGGTAGCAAC 59.871 47.826 0.00 0.00 0.00 4.17
417 418 3.010138 AGCTCCCACAAATAAGGTAGCAA 59.990 43.478 0.00 0.00 0.00 3.91
418 419 2.576191 AGCTCCCACAAATAAGGTAGCA 59.424 45.455 0.00 0.00 0.00 3.49
419 420 3.283259 AGCTCCCACAAATAAGGTAGC 57.717 47.619 0.00 0.00 0.00 3.58
420 421 6.235231 TCTAAGCTCCCACAAATAAGGTAG 57.765 41.667 0.00 0.00 0.00 3.18
421 422 6.157994 ACATCTAAGCTCCCACAAATAAGGTA 59.842 38.462 0.00 0.00 0.00 3.08
422 423 5.044846 ACATCTAAGCTCCCACAAATAAGGT 60.045 40.000 0.00 0.00 0.00 3.50
423 424 5.297776 CACATCTAAGCTCCCACAAATAAGG 59.702 44.000 0.00 0.00 0.00 2.69
424 425 6.037610 GTCACATCTAAGCTCCCACAAATAAG 59.962 42.308 0.00 0.00 0.00 1.73
425 426 5.880332 GTCACATCTAAGCTCCCACAAATAA 59.120 40.000 0.00 0.00 0.00 1.40
426 427 5.045942 TGTCACATCTAAGCTCCCACAAATA 60.046 40.000 0.00 0.00 0.00 1.40
427 428 4.263462 TGTCACATCTAAGCTCCCACAAAT 60.263 41.667 0.00 0.00 0.00 2.32
428 429 3.072330 TGTCACATCTAAGCTCCCACAAA 59.928 43.478 0.00 0.00 0.00 2.83
429 430 2.637382 TGTCACATCTAAGCTCCCACAA 59.363 45.455 0.00 0.00 0.00 3.33
430 431 2.256306 TGTCACATCTAAGCTCCCACA 58.744 47.619 0.00 0.00 0.00 4.17
431 432 3.462021 GATGTCACATCTAAGCTCCCAC 58.538 50.000 10.81 0.00 0.00 4.61
432 433 2.435805 GGATGTCACATCTAAGCTCCCA 59.564 50.000 17.46 0.00 0.00 4.37
433 434 2.703007 AGGATGTCACATCTAAGCTCCC 59.297 50.000 17.46 0.00 0.00 4.30
434 435 4.414337 AAGGATGTCACATCTAAGCTCC 57.586 45.455 17.46 0.18 0.00 4.70
435 436 6.398234 TCTAAGGATGTCACATCTAAGCTC 57.602 41.667 17.46 0.00 0.00 4.09
436 437 6.798427 TTCTAAGGATGTCACATCTAAGCT 57.202 37.500 17.46 3.19 0.00 3.74
437 438 7.334421 TGTTTTCTAAGGATGTCACATCTAAGC 59.666 37.037 17.46 0.73 0.00 3.09
438 439 8.777865 TGTTTTCTAAGGATGTCACATCTAAG 57.222 34.615 17.46 11.83 0.00 2.18
439 440 9.383519 GATGTTTTCTAAGGATGTCACATCTAA 57.616 33.333 17.46 2.83 37.41 2.10
440 441 8.762645 AGATGTTTTCTAAGGATGTCACATCTA 58.237 33.333 17.46 2.37 44.89 1.98
441 442 7.628234 AGATGTTTTCTAAGGATGTCACATCT 58.372 34.615 17.46 1.18 42.98 2.90
442 443 7.856145 AGATGTTTTCTAAGGATGTCACATC 57.144 36.000 9.53 9.53 39.62 3.06
443 444 8.762645 TCTAGATGTTTTCTAAGGATGTCACAT 58.237 33.333 0.00 0.00 36.50 3.21
444 445 8.134202 TCTAGATGTTTTCTAAGGATGTCACA 57.866 34.615 0.00 0.00 36.50 3.58
471 472 8.991783 ATCCATGATCAGTTTGTCTAATTCAT 57.008 30.769 0.09 0.00 0.00 2.57
474 475 9.212641 CGATATCCATGATCAGTTTGTCTAATT 57.787 33.333 0.09 0.00 0.00 1.40
475 476 7.821359 CCGATATCCATGATCAGTTTGTCTAAT 59.179 37.037 0.09 0.00 0.00 1.73
476 477 7.154656 CCGATATCCATGATCAGTTTGTCTAA 58.845 38.462 0.09 0.00 0.00 2.10
477 478 6.691508 CCGATATCCATGATCAGTTTGTCTA 58.308 40.000 0.09 0.00 0.00 2.59
478 479 5.545588 CCGATATCCATGATCAGTTTGTCT 58.454 41.667 0.09 0.00 0.00 3.41
479 480 4.153117 GCCGATATCCATGATCAGTTTGTC 59.847 45.833 0.09 0.00 0.00 3.18
480 481 4.067896 GCCGATATCCATGATCAGTTTGT 58.932 43.478 0.09 0.00 0.00 2.83
481 482 3.124128 CGCCGATATCCATGATCAGTTTG 59.876 47.826 0.09 0.00 0.00 2.93
482 483 3.244215 ACGCCGATATCCATGATCAGTTT 60.244 43.478 0.09 0.00 0.00 2.66
483 484 2.300152 ACGCCGATATCCATGATCAGTT 59.700 45.455 0.09 0.00 0.00 3.16
484 485 1.895798 ACGCCGATATCCATGATCAGT 59.104 47.619 0.09 0.00 0.00 3.41
485 486 2.534298 GACGCCGATATCCATGATCAG 58.466 52.381 0.09 0.00 0.00 2.90
486 487 1.204704 GGACGCCGATATCCATGATCA 59.795 52.381 0.00 0.00 34.87 2.92
487 488 1.478510 AGGACGCCGATATCCATGATC 59.521 52.381 0.00 0.00 37.47 2.92
488 489 1.561643 AGGACGCCGATATCCATGAT 58.438 50.000 0.00 0.00 37.47 2.45
489 490 2.209690 TAGGACGCCGATATCCATGA 57.790 50.000 0.00 0.00 37.47 3.07
490 491 3.526931 ATTAGGACGCCGATATCCATG 57.473 47.619 0.00 0.00 37.47 3.66
491 492 4.279145 ACTATTAGGACGCCGATATCCAT 58.721 43.478 0.00 0.00 37.47 3.41
492 493 3.693807 ACTATTAGGACGCCGATATCCA 58.306 45.455 0.00 0.00 37.47 3.41
493 494 4.715527 AACTATTAGGACGCCGATATCC 57.284 45.455 0.00 0.00 34.98 2.59
494 495 7.024340 TGATAACTATTAGGACGCCGATATC 57.976 40.000 0.00 0.00 0.00 1.63
495 496 6.602406 ACTGATAACTATTAGGACGCCGATAT 59.398 38.462 0.00 0.00 0.00 1.63
496 497 5.942236 ACTGATAACTATTAGGACGCCGATA 59.058 40.000 0.00 0.00 0.00 2.92
497 498 4.765856 ACTGATAACTATTAGGACGCCGAT 59.234 41.667 0.00 0.00 0.00 4.18
498 499 4.139786 ACTGATAACTATTAGGACGCCGA 58.860 43.478 0.00 0.00 0.00 5.54
499 500 4.500603 ACTGATAACTATTAGGACGCCG 57.499 45.455 0.00 0.00 0.00 6.46
500 501 6.331061 CCATACTGATAACTATTAGGACGCC 58.669 44.000 0.00 0.00 0.00 5.68
501 502 6.071503 ACCCATACTGATAACTATTAGGACGC 60.072 42.308 0.00 0.00 0.00 5.19
502 503 7.393796 AGACCCATACTGATAACTATTAGGACG 59.606 40.741 0.00 0.00 0.00 4.79
503 504 8.524487 CAGACCCATACTGATAACTATTAGGAC 58.476 40.741 0.00 0.00 37.54 3.85
504 505 8.232412 ACAGACCCATACTGATAACTATTAGGA 58.768 37.037 0.00 0.00 38.55 2.94
505 506 8.423906 ACAGACCCATACTGATAACTATTAGG 57.576 38.462 0.00 0.00 38.55 2.69
506 507 9.303116 AGACAGACCCATACTGATAACTATTAG 57.697 37.037 0.00 0.00 38.55 1.73
508 509 9.303116 CTAGACAGACCCATACTGATAACTATT 57.697 37.037 0.00 0.00 38.55 1.73
509 510 7.891183 CCTAGACAGACCCATACTGATAACTAT 59.109 40.741 0.00 0.00 38.55 2.12
510 511 7.073343 TCCTAGACAGACCCATACTGATAACTA 59.927 40.741 0.00 0.00 38.55 2.24
511 512 6.071984 CCTAGACAGACCCATACTGATAACT 58.928 44.000 0.00 0.00 38.55 2.24
512 513 6.016108 GTCCTAGACAGACCCATACTGATAAC 60.016 46.154 0.00 0.00 38.55 1.89
513 514 6.069331 GTCCTAGACAGACCCATACTGATAA 58.931 44.000 0.00 0.00 38.55 1.75
514 515 5.133830 TGTCCTAGACAGACCCATACTGATA 59.866 44.000 0.00 0.00 37.67 2.15
515 516 4.079154 TGTCCTAGACAGACCCATACTGAT 60.079 45.833 0.00 0.00 37.67 2.90
516 517 3.268595 TGTCCTAGACAGACCCATACTGA 59.731 47.826 0.00 0.00 37.67 3.41
517 518 3.381908 GTGTCCTAGACAGACCCATACTG 59.618 52.174 0.00 0.00 43.57 2.74
518 519 3.011369 TGTGTCCTAGACAGACCCATACT 59.989 47.826 0.00 0.00 43.57 2.12
519 520 3.362706 TGTGTCCTAGACAGACCCATAC 58.637 50.000 0.00 0.00 43.57 2.39
520 521 3.750501 TGTGTCCTAGACAGACCCATA 57.249 47.619 0.00 0.00 43.57 2.74
521 522 2.623418 TGTGTCCTAGACAGACCCAT 57.377 50.000 0.00 0.00 43.57 4.00
522 523 2.623418 ATGTGTCCTAGACAGACCCA 57.377 50.000 0.00 0.00 43.57 4.51
523 524 4.406003 ACATAATGTGTCCTAGACAGACCC 59.594 45.833 0.00 0.00 43.57 4.46
524 525 5.599999 ACATAATGTGTCCTAGACAGACC 57.400 43.478 0.00 0.00 43.57 3.85
551 552 9.515020 CACAAACAAAGTAAAAATCAGCTTAGA 57.485 29.630 0.00 0.00 0.00 2.10
552 553 8.755018 CCACAAACAAAGTAAAAATCAGCTTAG 58.245 33.333 0.00 0.00 0.00 2.18
553 554 8.254508 ACCACAAACAAAGTAAAAATCAGCTTA 58.745 29.630 0.00 0.00 0.00 3.09
554 555 7.102993 ACCACAAACAAAGTAAAAATCAGCTT 58.897 30.769 0.00 0.00 0.00 3.74
555 556 6.639563 ACCACAAACAAAGTAAAAATCAGCT 58.360 32.000 0.00 0.00 0.00 4.24
556 557 6.756542 AGACCACAAACAAAGTAAAAATCAGC 59.243 34.615 0.00 0.00 0.00 4.26
557 558 9.965824 ATAGACCACAAACAAAGTAAAAATCAG 57.034 29.630 0.00 0.00 0.00 2.90
627 628 9.965902 GAATATCACATCTAACCTCCCATAAAT 57.034 33.333 0.00 0.00 0.00 1.40
628 629 9.170890 AGAATATCACATCTAACCTCCCATAAA 57.829 33.333 0.00 0.00 0.00 1.40
629 630 8.742125 AGAATATCACATCTAACCTCCCATAA 57.258 34.615 0.00 0.00 0.00 1.90
630 631 8.742125 AAGAATATCACATCTAACCTCCCATA 57.258 34.615 0.00 0.00 0.00 2.74
631 632 7.639062 AAGAATATCACATCTAACCTCCCAT 57.361 36.000 0.00 0.00 0.00 4.00
632 633 8.561536 TTAAGAATATCACATCTAACCTCCCA 57.438 34.615 0.00 0.00 0.00 4.37
633 634 9.847224 TTTTAAGAATATCACATCTAACCTCCC 57.153 33.333 0.00 0.00 0.00 4.30
667 668 9.376075 CTGATACAGTTTGTCTAATTCACATCT 57.624 33.333 0.00 0.00 0.00 2.90
668 669 9.155975 ACTGATACAGTTTGTCTAATTCACATC 57.844 33.333 0.00 0.00 42.59 3.06
674 675 9.319143 GCTGATACTGATACAGTTTGTCTAATT 57.681 33.333 9.63 0.00 42.59 1.40
675 676 7.649705 CGCTGATACTGATACAGTTTGTCTAAT 59.350 37.037 9.63 0.00 42.59 1.73
676 677 6.972901 CGCTGATACTGATACAGTTTGTCTAA 59.027 38.462 9.63 0.00 42.59 2.10
677 678 6.495706 CGCTGATACTGATACAGTTTGTCTA 58.504 40.000 9.63 0.00 42.59 2.59
678 679 5.344066 CGCTGATACTGATACAGTTTGTCT 58.656 41.667 9.63 0.00 42.59 3.41
679 680 4.026475 GCGCTGATACTGATACAGTTTGTC 60.026 45.833 9.63 7.06 42.59 3.18
680 681 3.865745 GCGCTGATACTGATACAGTTTGT 59.134 43.478 9.63 0.00 42.59 2.83
681 682 4.115516 AGCGCTGATACTGATACAGTTTG 58.884 43.478 10.39 0.76 42.59 2.93
682 683 4.392921 AGCGCTGATACTGATACAGTTT 57.607 40.909 10.39 2.36 42.59 2.66
683 684 5.475220 AGATAGCGCTGATACTGATACAGTT 59.525 40.000 22.90 0.00 42.59 3.16
684 685 5.106357 CAGATAGCGCTGATACTGATACAGT 60.106 44.000 22.90 9.32 41.85 3.55
685 686 5.123027 TCAGATAGCGCTGATACTGATACAG 59.877 44.000 22.90 0.00 39.84 2.74
686 687 5.003804 TCAGATAGCGCTGATACTGATACA 58.996 41.667 22.90 5.28 39.84 2.29
687 688 5.553290 TCAGATAGCGCTGATACTGATAC 57.447 43.478 22.90 0.00 39.84 2.24
748 1066 4.640805 TTCGTTCAAATTACACTCGAGC 57.359 40.909 13.61 0.00 0.00 5.03
786 1106 2.105984 GCTGCATGGCCATCGTTTA 58.894 52.632 17.61 0.00 0.00 2.01
800 1120 3.796717 GGCAGTATTTTTAATTCGGCTGC 59.203 43.478 0.00 0.00 44.91 5.25
838 1159 3.574074 CTGGACTGGGCCTGGTTGG 62.574 68.421 15.36 0.00 39.35 3.77
888 1237 0.168128 GAATGGGAACGAAACGCAGG 59.832 55.000 0.00 0.00 34.04 4.85
908 1257 0.037590 TTGAGACAACGGAATGGGGG 59.962 55.000 0.00 0.00 0.00 5.40
909 1258 1.904287 TTTGAGACAACGGAATGGGG 58.096 50.000 0.00 0.00 0.00 4.96
976 1354 3.158648 CCGCGGGAACAGGGGATA 61.159 66.667 20.10 0.00 43.49 2.59
1029 1429 2.896443 GCCTCCCTCTTCCTGACG 59.104 66.667 0.00 0.00 0.00 4.35
1107 1507 3.682292 GATCCGCTTCCGTGGCCTT 62.682 63.158 3.32 0.00 40.70 4.35
1579 2036 3.249559 GGGAATTCGCAGAAGCTGATTAG 59.750 47.826 16.98 0.00 45.90 1.73
1662 2119 1.817087 AGACATCCTGGCAGATGGAT 58.183 50.000 17.94 8.64 46.56 3.41
1900 2369 3.452627 AGTATCTCCAGTTTAGGTGCCTG 59.547 47.826 0.12 0.00 0.00 4.85
1992 2467 9.190858 GCATCTGTATGTAAGAGTTAAGATGAG 57.809 37.037 12.25 0.00 41.35 2.90
2009 2497 7.520451 AAATGTAATGATGCTGCATCTGTAT 57.480 32.000 34.64 21.70 41.06 2.29
2010 2498 6.947644 AAATGTAATGATGCTGCATCTGTA 57.052 33.333 34.64 25.11 41.06 2.74
2011 2499 5.847111 AAATGTAATGATGCTGCATCTGT 57.153 34.783 34.64 25.97 41.06 3.41
2012 2500 6.533723 ACAAAAATGTAATGATGCTGCATCTG 59.466 34.615 34.64 24.40 41.06 2.90
2013 2501 6.636705 ACAAAAATGTAATGATGCTGCATCT 58.363 32.000 34.64 22.37 41.06 2.90
2014 2502 6.897259 ACAAAAATGTAATGATGCTGCATC 57.103 33.333 30.56 30.56 40.88 3.91
2036 2526 6.873076 TGGGCATGAAACAAAAGAATGAATAC 59.127 34.615 0.00 0.00 0.00 1.89
2054 2544 4.021719 ACTCTGAACAAAAGAATGGGCATG 60.022 41.667 0.00 0.00 0.00 4.06
2140 2637 3.446442 ACAGCATTCAAATCAGGGACT 57.554 42.857 0.00 0.00 43.88 3.85
2309 2810 9.220767 AGTAAAGAAGAGGCATGTTAAAGTAAG 57.779 33.333 0.00 0.00 0.00 2.34
2394 2903 3.587061 TCAAGGCCTTTGACTGGATCTAA 59.413 43.478 17.61 0.00 40.82 2.10
2531 3040 6.153340 CCCATTGTTTGTTGATCCTATGACTT 59.847 38.462 0.00 0.00 0.00 3.01
2638 3180 1.757949 TGGGCATCCAAAGACGACA 59.242 52.632 0.00 0.00 40.73 4.35
2721 3263 5.129815 ACCATTGGCATGCTTATTCTGAAAT 59.870 36.000 18.92 1.71 0.00 2.17
2738 3280 5.163513 GCAAAGTCACAGATAAACCATTGG 58.836 41.667 0.00 0.00 0.00 3.16
2973 3540 4.985413 ACATAATGCAACTGGAACAATCG 58.015 39.130 0.00 0.00 38.70 3.34
2998 3565 6.227298 ACGACATCCATACTTTCTCAGAAT 57.773 37.500 0.00 0.00 0.00 2.40
2999 3566 5.661056 ACGACATCCATACTTTCTCAGAA 57.339 39.130 0.00 0.00 0.00 3.02
3051 3627 6.086319 CTGAAACAAAGCAACTTTTCAGTG 57.914 37.500 16.69 0.00 45.16 3.66
3082 3659 3.999663 TGGGTTTTCAAAACAAGCACAAG 59.000 39.130 14.92 0.00 0.00 3.16
3095 3672 6.834451 TGTACAAAAGGATAGTTGGGTTTTCA 59.166 34.615 0.00 0.00 0.00 2.69
3116 3693 8.015658 CACTTAAAGCTGGATACTTTTGTGTAC 58.984 37.037 0.00 0.00 38.31 2.90
3133 3710 5.108368 GCAACGAAAAAGTAGCACTTAAAGC 60.108 40.000 0.00 0.00 37.47 3.51
3135 3712 5.968848 CAGCAACGAAAAAGTAGCACTTAAA 59.031 36.000 0.00 0.00 37.47 1.52
3153 3730 0.387239 GGTTGACCATTCGCAGCAAC 60.387 55.000 0.00 0.00 38.40 4.17
3161 3738 3.418684 ACAGTACCAGGTTGACCATTC 57.581 47.619 0.00 0.00 38.89 2.67
3174 3751 8.902540 TTGGAATGACATATATCAACAGTACC 57.097 34.615 0.00 0.00 30.82 3.34
3230 3807 3.807553 TGTGTGTGAGATCAGAAAGCAA 58.192 40.909 0.00 0.00 0.00 3.91
3231 3808 3.473923 TGTGTGTGAGATCAGAAAGCA 57.526 42.857 0.00 0.00 0.00 3.91
3232 3809 4.818534 TTTGTGTGTGAGATCAGAAAGC 57.181 40.909 0.00 0.00 0.00 3.51
3233 3810 5.240183 ACCATTTGTGTGTGAGATCAGAAAG 59.760 40.000 0.00 0.00 32.17 2.62
3234 3811 5.132502 ACCATTTGTGTGTGAGATCAGAAA 58.867 37.500 0.00 0.00 32.93 2.52
3235 3812 4.717877 ACCATTTGTGTGTGAGATCAGAA 58.282 39.130 0.00 0.00 0.00 3.02
3236 3813 4.356405 ACCATTTGTGTGTGAGATCAGA 57.644 40.909 0.00 0.00 0.00 3.27
3237 3814 4.093998 GCTACCATTTGTGTGTGAGATCAG 59.906 45.833 0.00 0.00 0.00 2.90
3238 3815 4.002982 GCTACCATTTGTGTGTGAGATCA 58.997 43.478 0.00 0.00 0.00 2.92
3256 3833 6.166982 AGAAGGTCTTCAAATGTAGTGCTAC 58.833 40.000 12.54 2.60 41.84 3.58
3260 3837 9.141400 GTAAGTAGAAGGTCTTCAAATGTAGTG 57.859 37.037 12.54 0.00 41.84 2.74
3282 3859 0.233074 CACACTGTGCACGCTGTAAG 59.767 55.000 16.46 8.24 0.00 2.34
3290 3867 3.115554 GGAAAATGAACACACTGTGCAC 58.884 45.455 10.75 10.75 39.05 4.57
3328 3905 5.988092 TGTTTTACGGTAGGAAACAAATCG 58.012 37.500 13.13 0.00 39.51 3.34
3334 3911 5.945466 TCCAATGTTTTACGGTAGGAAAC 57.055 39.130 8.01 8.01 34.67 2.78
3343 3920 4.310769 TGGCCAAATTCCAATGTTTTACG 58.689 39.130 0.61 0.00 0.00 3.18
3351 3928 1.908619 GGGACTTGGCCAAATTCCAAT 59.091 47.619 32.57 11.44 42.18 3.16
3353 3930 0.189574 TGGGACTTGGCCAAATTCCA 59.810 50.000 32.57 29.10 0.00 3.53
3354 3931 0.897621 CTGGGACTTGGCCAAATTCC 59.102 55.000 27.60 27.60 0.00 3.01
3355 3932 1.273327 CACTGGGACTTGGCCAAATTC 59.727 52.381 20.91 17.82 0.00 2.17
3364 3941 3.564225 GGTAAGAAACACACTGGGACTTG 59.436 47.826 0.00 0.00 0.00 3.16
3395 3972 4.762251 GCAGATTACTAAGGCCCCAAATAG 59.238 45.833 0.00 0.00 0.00 1.73
3437 4014 6.997655 TGTATGATCTGGGCTGTATTTCTAG 58.002 40.000 0.00 0.00 0.00 2.43
3469 4046 5.236047 GCTACTAATGTTGATCTGGCTCAAG 59.764 44.000 0.00 0.00 35.88 3.02
3474 4051 5.059161 TCATGCTACTAATGTTGATCTGGC 58.941 41.667 0.00 0.00 0.00 4.85
3521 4181 1.416401 TCACTTGGAACTGGACAGGTC 59.584 52.381 8.84 8.84 44.27 3.85
3545 4205 8.871125 ACGGATACTTCATAGAAATAATGAGGT 58.129 33.333 6.18 6.18 43.56 3.85
3558 4218 6.653320 ACTTGCTGAAAAACGGATACTTCATA 59.347 34.615 0.00 0.00 0.00 2.15
3591 4253 9.189723 GACGGAAAACATCAATATACTACTACC 57.810 37.037 0.00 0.00 0.00 3.18
3606 4268 3.071023 TGAGGAGTTGAGACGGAAAACAT 59.929 43.478 0.00 0.00 0.00 2.71
3612 4274 1.202891 TGTCTGAGGAGTTGAGACGGA 60.203 52.381 0.00 0.00 39.23 4.69
3613 4275 1.248486 TGTCTGAGGAGTTGAGACGG 58.752 55.000 0.00 0.00 39.23 4.79
3614 4276 3.584406 AATGTCTGAGGAGTTGAGACG 57.416 47.619 0.00 0.00 39.23 4.18
3615 4277 6.183360 GCAATTAATGTCTGAGGAGTTGAGAC 60.183 42.308 0.00 0.00 37.27 3.36
3616 4278 5.877012 GCAATTAATGTCTGAGGAGTTGAGA 59.123 40.000 0.00 0.00 0.00 3.27
3617 4279 5.065731 GGCAATTAATGTCTGAGGAGTTGAG 59.934 44.000 0.00 0.00 0.00 3.02
3618 4280 4.943705 GGCAATTAATGTCTGAGGAGTTGA 59.056 41.667 0.00 0.00 0.00 3.18
3619 4281 4.096984 GGGCAATTAATGTCTGAGGAGTTG 59.903 45.833 0.00 0.00 32.85 3.16
3620 4282 4.018050 AGGGCAATTAATGTCTGAGGAGTT 60.018 41.667 0.00 0.00 32.85 3.01
3621 4283 3.525199 AGGGCAATTAATGTCTGAGGAGT 59.475 43.478 0.00 0.00 32.85 3.85
3622 4284 4.162040 AGGGCAATTAATGTCTGAGGAG 57.838 45.455 0.00 0.00 32.85 3.69
3623 4285 4.591321 AAGGGCAATTAATGTCTGAGGA 57.409 40.909 0.00 0.00 32.85 3.71
3624 4286 4.952335 AGAAAGGGCAATTAATGTCTGAGG 59.048 41.667 0.00 0.00 32.85 3.86
3625 4287 6.521151 AAGAAAGGGCAATTAATGTCTGAG 57.479 37.500 0.00 0.00 32.85 3.35
3626 4288 6.916360 AAAGAAAGGGCAATTAATGTCTGA 57.084 33.333 0.00 0.00 32.85 3.27
3627 4289 6.128472 GCAAAAGAAAGGGCAATTAATGTCTG 60.128 38.462 0.00 0.00 32.85 3.51
3628 4290 5.934043 GCAAAAGAAAGGGCAATTAATGTCT 59.066 36.000 0.00 0.00 32.85 3.41
3629 4291 5.934043 AGCAAAAGAAAGGGCAATTAATGTC 59.066 36.000 0.00 0.00 0.00 3.06
3630 4292 5.702209 CAGCAAAAGAAAGGGCAATTAATGT 59.298 36.000 0.00 0.00 0.00 2.71
3631 4293 5.391203 GCAGCAAAAGAAAGGGCAATTAATG 60.391 40.000 0.00 0.00 0.00 1.90
3632 4294 4.696877 GCAGCAAAAGAAAGGGCAATTAAT 59.303 37.500 0.00 0.00 0.00 1.40
3633 4295 4.064388 GCAGCAAAAGAAAGGGCAATTAA 58.936 39.130 0.00 0.00 0.00 1.40
3634 4296 3.556843 GGCAGCAAAAGAAAGGGCAATTA 60.557 43.478 0.00 0.00 0.00 1.40
3635 4297 2.497138 GCAGCAAAAGAAAGGGCAATT 58.503 42.857 0.00 0.00 0.00 2.32
3636 4298 1.271001 GGCAGCAAAAGAAAGGGCAAT 60.271 47.619 0.00 0.00 0.00 3.56
3637 4299 0.106521 GGCAGCAAAAGAAAGGGCAA 59.893 50.000 0.00 0.00 0.00 4.52
3638 4300 1.047596 TGGCAGCAAAAGAAAGGGCA 61.048 50.000 0.00 0.00 0.00 5.36
3639 4301 0.322648 ATGGCAGCAAAAGAAAGGGC 59.677 50.000 0.00 0.00 0.00 5.19



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.