Multiple sequence alignment - TraesCS1A01G085500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G085500 chr1A 100.000 5240 0 0 1 5240 71562337 71557098 0.000000e+00 9677.0
1 TraesCS1A01G085500 chr1A 96.831 284 2 1 1887 2170 382618980 382619256 7.950000e-128 468.0
2 TraesCS1A01G085500 chr1D 94.706 2399 67 11 2169 4544 71045748 71043387 0.000000e+00 3672.0
3 TraesCS1A01G085500 chr1D 95.477 995 23 8 903 1894 71046721 71045746 0.000000e+00 1568.0
4 TraesCS1A01G085500 chr1D 87.220 892 82 12 33 902 71048237 71047356 0.000000e+00 987.0
5 TraesCS1A01G085500 chr1D 92.263 685 43 3 4565 5240 71042334 71041651 0.000000e+00 963.0
6 TraesCS1A01G085500 chr1D 78.608 776 123 21 4476 5221 484427226 484426464 1.710000e-129 473.0
7 TraesCS1A01G085500 chr1B 94.983 2292 72 16 2169 4436 112697044 112694772 0.000000e+00 3555.0
8 TraesCS1A01G085500 chr1B 94.225 935 29 12 966 1894 112697957 112697042 0.000000e+00 1404.0
9 TraesCS1A01G085500 chr1B 86.637 681 64 11 4584 5240 112694758 112694081 0.000000e+00 728.0
10 TraesCS1A01G085500 chr1B 87.631 574 61 2 277 841 112704325 112703753 0.000000e+00 658.0
11 TraesCS1A01G085500 chr1B 99.281 278 2 0 1893 2170 105535697 105535974 2.180000e-138 503.0
12 TraesCS1A01G085500 chr1B 98.905 274 2 1 1897 2170 31719244 31718972 6.100000e-134 488.0
13 TraesCS1A01G085500 chr1B 77.386 681 102 29 4486 5141 396973456 396974109 1.790000e-94 357.0
14 TraesCS1A01G085500 chr1B 80.340 412 69 7 4476 4877 674684752 674684343 8.530000e-78 302.0
15 TraesCS1A01G085500 chr1B 95.161 62 3 0 909 970 112698161 112698100 1.200000e-16 99.0
16 TraesCS1A01G085500 chr2B 98.932 281 3 0 1890 2170 667769426 667769706 2.180000e-138 503.0
17 TraesCS1A01G085500 chr2B 74.595 618 113 25 4642 5240 41432298 41431706 1.130000e-56 231.0
18 TraesCS1A01G085500 chr2B 82.474 97 16 1 4386 4481 41432671 41432575 3.360000e-12 84.2
19 TraesCS1A01G085500 chr6B 79.115 723 109 20 4547 5240 226149179 226148470 1.330000e-125 460.0
20 TraesCS1A01G085500 chr6B 78.477 683 113 19 4478 5135 706742970 706743643 2.920000e-112 416.0
21 TraesCS1A01G085500 chr5A 76.788 797 131 32 4476 5240 119220837 119221611 1.060000e-106 398.0
22 TraesCS1A01G085500 chr5A 85.714 91 13 0 4391 4481 52440667 52440757 4.320000e-16 97.1
23 TraesCS1A01G085500 chr5A 79.787 94 19 0 4386 4479 205824917 205825010 9.420000e-08 69.4
24 TraesCS1A01G085500 chr2A 75.031 809 139 33 4470 5240 28686961 28687744 3.050000e-82 316.0
25 TraesCS1A01G085500 chr6D 81.481 297 41 10 4955 5240 127136474 127136181 1.130000e-56 231.0
26 TraesCS1A01G085500 chr3D 76.122 490 86 16 4762 5224 402491515 402491030 1.470000e-55 228.0
27 TraesCS1A01G085500 chr2D 79.322 295 51 5 4951 5239 529666370 529666080 1.150000e-46 198.0
28 TraesCS1A01G085500 chr2D 100.000 28 0 0 2833 2860 570132200 570132227 9.000000e-03 52.8
29 TraesCS1A01G085500 chr3B 80.228 263 43 7 2884 3141 728611351 728611609 6.930000e-44 189.0
30 TraesCS1A01G085500 chr4B 94.915 118 2 1 1890 2003 641407266 641407149 1.160000e-41 182.0
31 TraesCS1A01G085500 chr7A 79.079 239 38 8 2884 3119 278335304 278335533 2.530000e-33 154.0
32 TraesCS1A01G085500 chr5B 82.707 133 18 5 4476 4606 396504557 396504686 4.290000e-21 113.0
33 TraesCS1A01G085500 chr5D 83.505 97 14 2 4386 4481 150272514 150272419 7.230000e-14 89.8
34 TraesCS1A01G085500 chr4A 89.362 47 3 2 4394 4439 16177844 16177799 2.040000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G085500 chr1A 71557098 71562337 5239 True 9677.0 9677 100.0000 1 5240 1 chr1A.!!$R1 5239
1 TraesCS1A01G085500 chr1D 71041651 71048237 6586 True 1797.5 3672 92.4165 33 5240 4 chr1D.!!$R2 5207
2 TraesCS1A01G085500 chr1D 484426464 484427226 762 True 473.0 473 78.6080 4476 5221 1 chr1D.!!$R1 745
3 TraesCS1A01G085500 chr1B 112694081 112698161 4080 True 1446.5 3555 92.7515 909 5240 4 chr1B.!!$R4 4331
4 TraesCS1A01G085500 chr1B 112703753 112704325 572 True 658.0 658 87.6310 277 841 1 chr1B.!!$R2 564
5 TraesCS1A01G085500 chr1B 396973456 396974109 653 False 357.0 357 77.3860 4486 5141 1 chr1B.!!$F2 655
6 TraesCS1A01G085500 chr6B 226148470 226149179 709 True 460.0 460 79.1150 4547 5240 1 chr6B.!!$R1 693
7 TraesCS1A01G085500 chr6B 706742970 706743643 673 False 416.0 416 78.4770 4478 5135 1 chr6B.!!$F1 657
8 TraesCS1A01G085500 chr5A 119220837 119221611 774 False 398.0 398 76.7880 4476 5240 1 chr5A.!!$F2 764
9 TraesCS1A01G085500 chr2A 28686961 28687744 783 False 316.0 316 75.0310 4470 5240 1 chr2A.!!$F1 770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 169 0.039074 ACAAGCGGAGAAGTGAGTCG 60.039 55.0 0.0 0.0 0.00 4.18 F
539 550 0.320771 GGGTGGCTATATGACGGCAG 60.321 60.0 0.0 0.0 36.31 4.85 F
2130 2940 0.026803 GTTCCTCGATGATGCGTTGC 59.973 55.0 0.0 0.0 0.00 4.17 F
2131 2941 0.108186 TTCCTCGATGATGCGTTGCT 60.108 50.0 0.0 0.0 0.00 3.91 F
2140 2950 0.110056 GATGCGTTGCTGAACCTGTG 60.110 55.0 0.0 0.0 0.00 3.66 F
2144 2954 0.304705 CGTTGCTGAACCTGTGTCAC 59.695 55.0 0.0 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2111 2921 0.026803 GCAACGCATCATCGAGGAAC 59.973 55.000 2.91 0.00 0.00 3.62 R
2164 2974 0.038166 TTGCCTGCGGAGGAAATCTT 59.962 50.000 29.09 0.00 42.93 2.40 R
3817 4649 0.512952 CTTCTGTCGGTCCGCAAAAG 59.487 55.000 6.34 6.87 0.00 2.27 R
4028 4861 2.507944 CGCCCAAGATGCCTAGCT 59.492 61.111 0.00 0.00 0.00 3.32 R
4149 4982 6.418057 ACTTGAATTGGGCAGTAAAATCAA 57.582 33.333 0.00 0.00 0.00 2.57 R
4367 5201 4.508662 CCCTAGGAATCAGTGTGAAAGTC 58.491 47.826 11.48 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.048337 TCGATTTTACTGGAAAGCGGT 57.952 42.857 13.54 0.00 45.40 5.68
21 22 2.739913 TCGATTTTACTGGAAAGCGGTG 59.260 45.455 13.54 0.00 45.40 4.94
22 23 2.482721 CGATTTTACTGGAAAGCGGTGT 59.517 45.455 8.04 0.00 42.68 4.16
23 24 3.058501 CGATTTTACTGGAAAGCGGTGTT 60.059 43.478 8.04 0.00 42.68 3.32
24 25 3.701532 TTTTACTGGAAAGCGGTGTTG 57.298 42.857 0.00 0.00 0.00 3.33
25 26 2.335316 TTACTGGAAAGCGGTGTTGT 57.665 45.000 0.00 0.00 0.00 3.32
26 27 1.588674 TACTGGAAAGCGGTGTTGTG 58.411 50.000 0.00 0.00 0.00 3.33
27 28 0.107410 ACTGGAAAGCGGTGTTGTGA 60.107 50.000 0.00 0.00 0.00 3.58
28 29 0.588252 CTGGAAAGCGGTGTTGTGAG 59.412 55.000 0.00 0.00 0.00 3.51
29 30 0.817634 TGGAAAGCGGTGTTGTGAGG 60.818 55.000 0.00 0.00 0.00 3.86
30 31 1.515521 GGAAAGCGGTGTTGTGAGGG 61.516 60.000 0.00 0.00 0.00 4.30
31 32 0.818040 GAAAGCGGTGTTGTGAGGGT 60.818 55.000 0.00 0.00 0.00 4.34
110 111 2.009774 CGATCCTACAAAAGGTGGCAG 58.990 52.381 0.00 0.00 46.62 4.85
143 144 1.775039 GCTGCAACGAGAGCAACACA 61.775 55.000 0.00 0.00 42.17 3.72
144 145 0.657312 CTGCAACGAGAGCAACACAA 59.343 50.000 0.00 0.00 42.17 3.33
160 161 4.002906 ACACAATTCTACAAGCGGAGAA 57.997 40.909 0.00 0.00 36.18 2.87
168 169 0.039074 ACAAGCGGAGAAGTGAGTCG 60.039 55.000 0.00 0.00 0.00 4.18
173 174 1.079750 GGAGAAGTGAGTCGGTGGC 60.080 63.158 0.00 0.00 0.00 5.01
207 208 3.733344 GATGGCGGGCGCTACAAGA 62.733 63.158 7.64 0.00 41.60 3.02
239 240 2.514824 GGGAGAAGGATGCGCCAC 60.515 66.667 4.18 0.00 40.02 5.01
270 272 3.252964 CGACAAATGACGCCAGCA 58.747 55.556 0.00 0.00 0.00 4.41
275 277 2.158559 ACAAATGACGCCAGCAATGTA 58.841 42.857 0.00 0.00 0.00 2.29
308 310 3.000727 GTCGTAGGTTACTGCTGCAAAT 58.999 45.455 3.02 0.00 0.00 2.32
325 327 1.922135 AATGACCGATGCCGCACAAC 61.922 55.000 0.00 0.00 0.00 3.32
345 347 1.293924 GGAGCAACCATCAGACATCG 58.706 55.000 0.00 0.00 38.79 3.84
358 360 5.458041 TCAGACATCGATGATGCAATAGA 57.542 39.130 31.33 13.43 43.15 1.98
368 370 1.987807 ATGCAATAGAGTGGCGGGCT 61.988 55.000 2.38 0.00 0.00 5.19
390 392 1.683790 GGTGATTCAACGAGTCGCCG 61.684 60.000 13.59 3.71 38.70 6.46
403 405 3.576356 CGCCGCCTATGTTGCCAG 61.576 66.667 0.00 0.00 0.00 4.85
409 411 0.817229 GCCTATGTTGCCAGGAGAGC 60.817 60.000 0.00 0.00 33.42 4.09
527 538 1.001641 GCTCAACATGAGGGTGGCT 60.002 57.895 0.00 0.00 44.43 4.75
539 550 0.320771 GGGTGGCTATATGACGGCAG 60.321 60.000 0.00 0.00 36.31 4.85
547 558 2.751166 ATATGACGGCAGCATACCTC 57.249 50.000 0.00 0.00 31.61 3.85
564 575 0.917259 CTCTTGCATGCTACGACGAC 59.083 55.000 20.33 0.00 0.00 4.34
567 578 1.068832 TTGCATGCTACGACGACGAC 61.069 55.000 20.33 3.64 42.66 4.34
583 594 3.356639 GACTGTCCATGCCGCGAGA 62.357 63.158 8.23 0.00 0.00 4.04
603 614 1.520342 GGGCGCTGACTCTTGCTAG 60.520 63.158 7.64 0.00 0.00 3.42
687 698 1.370609 CTTGCTACGAGAGAGGTCGA 58.629 55.000 0.00 0.00 42.85 4.20
740 751 3.761752 TGATGAGGAGTTATGTCACACGA 59.238 43.478 0.00 0.00 0.00 4.35
748 759 1.741528 TATGTCACACGACGGAGCTA 58.258 50.000 0.00 0.00 45.80 3.32
782 795 4.398319 GGGAGAAGGAACAAGATCAAACA 58.602 43.478 0.00 0.00 0.00 2.83
942 1597 9.117183 CCCTTATCTGTGGGTACTAAATTTAAC 57.883 37.037 0.00 0.00 38.65 2.01
1097 1900 4.514585 ACCAACCAACAGCCGCCA 62.515 61.111 0.00 0.00 0.00 5.69
1121 1924 4.891727 GATCCATGGCGTCGGCGT 62.892 66.667 12.58 11.37 41.24 5.68
1122 1925 4.891727 ATCCATGGCGTCGGCGTC 62.892 66.667 7.28 7.28 43.99 5.19
1171 1974 2.757099 CCAGCTGCCCCAACATCC 60.757 66.667 8.66 0.00 0.00 3.51
1542 2349 2.095263 ACGAAAATGTGGCAAGATTCGG 60.095 45.455 21.63 10.17 42.69 4.30
1566 2373 1.121240 CGATAGTGTGCCGAATCGAC 58.879 55.000 3.36 0.00 42.88 4.20
1573 2380 1.000145 GTGCCGAATCGACCTCTTTC 59.000 55.000 3.36 0.00 0.00 2.62
1596 2403 2.531998 GCAAACGCGCAAAATTAATCCG 60.532 45.455 5.73 0.00 0.00 4.18
1633 2440 7.704271 TGACTATACTTCGGAAGTTGATGTAG 58.296 38.462 26.71 20.22 42.81 2.74
1706 2513 6.868339 ACTGTTTGTTTTTCCTTTCAGTTCTG 59.132 34.615 0.00 0.00 32.15 3.02
1707 2514 6.754193 TGTTTGTTTTTCCTTTCAGTTCTGT 58.246 32.000 0.00 0.00 0.00 3.41
1708 2515 7.887381 TGTTTGTTTTTCCTTTCAGTTCTGTA 58.113 30.769 0.00 0.00 0.00 2.74
1709 2516 8.527810 TGTTTGTTTTTCCTTTCAGTTCTGTAT 58.472 29.630 0.00 0.00 0.00 2.29
1819 2627 9.654663 GAGTAACAAGGTATCAATAGTTTCAGT 57.345 33.333 0.00 0.00 0.00 3.41
1822 2630 8.918202 AACAAGGTATCAATAGTTTCAGTGAA 57.082 30.769 0.08 0.08 0.00 3.18
1913 2723 2.755836 TTTGACGAAAAGCTGTCAGC 57.244 45.000 17.48 17.48 45.08 4.26
1961 2771 7.979786 ATAGAGAGAGGAAATTTGGTACAGA 57.020 36.000 0.00 0.00 42.39 3.41
1962 2772 6.293004 AGAGAGAGGAAATTTGGTACAGAG 57.707 41.667 0.00 0.00 42.39 3.35
1963 2773 4.837972 AGAGAGGAAATTTGGTACAGAGC 58.162 43.478 0.00 0.00 42.39 4.09
1964 2774 4.287067 AGAGAGGAAATTTGGTACAGAGCA 59.713 41.667 0.00 0.00 42.39 4.26
1965 2775 5.045286 AGAGAGGAAATTTGGTACAGAGCAT 60.045 40.000 0.00 0.00 42.39 3.79
1966 2776 6.156949 AGAGAGGAAATTTGGTACAGAGCATA 59.843 38.462 0.00 0.00 42.39 3.14
1967 2777 6.116126 AGAGGAAATTTGGTACAGAGCATAC 58.884 40.000 0.00 0.00 42.39 2.39
1968 2778 5.815581 AGGAAATTTGGTACAGAGCATACA 58.184 37.500 0.00 0.00 42.39 2.29
1969 2779 5.648092 AGGAAATTTGGTACAGAGCATACAC 59.352 40.000 0.00 0.00 42.39 2.90
1970 2780 5.163652 GGAAATTTGGTACAGAGCATACACC 60.164 44.000 0.00 0.00 42.39 4.16
1971 2781 4.844349 ATTTGGTACAGAGCATACACCT 57.156 40.909 0.00 0.00 42.39 4.00
1972 2782 5.950544 ATTTGGTACAGAGCATACACCTA 57.049 39.130 0.00 0.00 42.39 3.08
1973 2783 5.748670 TTTGGTACAGAGCATACACCTAA 57.251 39.130 0.00 0.00 42.39 2.69
1974 2784 5.748670 TTGGTACAGAGCATACACCTAAA 57.251 39.130 0.00 0.00 42.39 1.85
1975 2785 5.950544 TGGTACAGAGCATACACCTAAAT 57.049 39.130 0.00 0.00 0.00 1.40
1976 2786 5.914033 TGGTACAGAGCATACACCTAAATC 58.086 41.667 0.00 0.00 0.00 2.17
1977 2787 5.163343 TGGTACAGAGCATACACCTAAATCC 60.163 44.000 0.00 0.00 0.00 3.01
1978 2788 4.423625 ACAGAGCATACACCTAAATCCC 57.576 45.455 0.00 0.00 0.00 3.85
1979 2789 3.136626 ACAGAGCATACACCTAAATCCCC 59.863 47.826 0.00 0.00 0.00 4.81
1980 2790 3.136443 CAGAGCATACACCTAAATCCCCA 59.864 47.826 0.00 0.00 0.00 4.96
1981 2791 3.392616 AGAGCATACACCTAAATCCCCAG 59.607 47.826 0.00 0.00 0.00 4.45
1982 2792 2.158608 AGCATACACCTAAATCCCCAGC 60.159 50.000 0.00 0.00 0.00 4.85
1983 2793 2.422803 GCATACACCTAAATCCCCAGCA 60.423 50.000 0.00 0.00 0.00 4.41
1984 2794 3.897239 CATACACCTAAATCCCCAGCAA 58.103 45.455 0.00 0.00 0.00 3.91
1985 2795 2.514458 ACACCTAAATCCCCAGCAAG 57.486 50.000 0.00 0.00 0.00 4.01
1986 2796 1.005924 ACACCTAAATCCCCAGCAAGG 59.994 52.381 0.00 0.00 37.03 3.61
2000 2810 5.702349 CCAGCAAGGGATAAAAGATGATC 57.298 43.478 0.00 0.00 0.00 2.92
2001 2811 5.135383 CCAGCAAGGGATAAAAGATGATCA 58.865 41.667 0.00 0.00 0.00 2.92
2002 2812 5.773680 CCAGCAAGGGATAAAAGATGATCAT 59.226 40.000 8.25 8.25 0.00 2.45
2003 2813 6.072064 CCAGCAAGGGATAAAAGATGATCATC 60.072 42.308 25.42 25.42 38.09 2.92
2004 2814 6.008960 AGCAAGGGATAAAAGATGATCATCC 58.991 40.000 28.23 15.17 38.58 3.51
2016 2826 6.966534 AGATGATCATCCCATTTTAACACC 57.033 37.500 28.23 2.93 38.58 4.16
2017 2827 5.835280 AGATGATCATCCCATTTTAACACCC 59.165 40.000 28.23 2.31 38.58 4.61
2018 2828 4.940483 TGATCATCCCATTTTAACACCCA 58.060 39.130 0.00 0.00 0.00 4.51
2019 2829 5.527385 TGATCATCCCATTTTAACACCCAT 58.473 37.500 0.00 0.00 0.00 4.00
2020 2830 6.677552 TGATCATCCCATTTTAACACCCATA 58.322 36.000 0.00 0.00 0.00 2.74
2021 2831 6.549364 TGATCATCCCATTTTAACACCCATAC 59.451 38.462 0.00 0.00 0.00 2.39
2022 2832 5.832221 TCATCCCATTTTAACACCCATACA 58.168 37.500 0.00 0.00 0.00 2.29
2023 2833 6.439487 TCATCCCATTTTAACACCCATACAT 58.561 36.000 0.00 0.00 0.00 2.29
2024 2834 7.587258 TCATCCCATTTTAACACCCATACATA 58.413 34.615 0.00 0.00 0.00 2.29
2025 2835 7.504238 TCATCCCATTTTAACACCCATACATAC 59.496 37.037 0.00 0.00 0.00 2.39
2026 2836 6.732487 TCCCATTTTAACACCCATACATACA 58.268 36.000 0.00 0.00 0.00 2.29
2027 2837 6.603997 TCCCATTTTAACACCCATACATACAC 59.396 38.462 0.00 0.00 0.00 2.90
2028 2838 6.183360 CCCATTTTAACACCCATACATACACC 60.183 42.308 0.00 0.00 0.00 4.16
2029 2839 6.378564 CCATTTTAACACCCATACATACACCA 59.621 38.462 0.00 0.00 0.00 4.17
2030 2840 7.069331 CCATTTTAACACCCATACATACACCAT 59.931 37.037 0.00 0.00 0.00 3.55
2031 2841 7.633193 TTTTAACACCCATACATACACCATC 57.367 36.000 0.00 0.00 0.00 3.51
2032 2842 6.569127 TTAACACCCATACATACACCATCT 57.431 37.500 0.00 0.00 0.00 2.90
2033 2843 7.678207 TTAACACCCATACATACACCATCTA 57.322 36.000 0.00 0.00 0.00 1.98
2034 2844 6.569127 AACACCCATACATACACCATCTAA 57.431 37.500 0.00 0.00 0.00 2.10
2035 2845 6.763715 ACACCCATACATACACCATCTAAT 57.236 37.500 0.00 0.00 0.00 1.73
2036 2846 6.533730 ACACCCATACATACACCATCTAATG 58.466 40.000 0.00 0.00 0.00 1.90
2037 2847 6.328934 ACACCCATACATACACCATCTAATGA 59.671 38.462 0.00 0.00 0.00 2.57
2038 2848 7.017551 ACACCCATACATACACCATCTAATGAT 59.982 37.037 0.00 0.00 0.00 2.45
2039 2849 7.550551 CACCCATACATACACCATCTAATGATC 59.449 40.741 0.00 0.00 0.00 2.92
2040 2850 7.050377 CCCATACATACACCATCTAATGATCC 58.950 42.308 0.00 0.00 0.00 3.36
2041 2851 7.092712 CCCATACATACACCATCTAATGATCCT 60.093 40.741 0.00 0.00 0.00 3.24
2042 2852 8.981659 CCATACATACACCATCTAATGATCCTA 58.018 37.037 0.00 0.00 0.00 2.94
2044 2854 9.775539 ATACATACACCATCTAATGATCCTAGT 57.224 33.333 0.00 0.00 0.00 2.57
2045 2855 8.128322 ACATACACCATCTAATGATCCTAGTC 57.872 38.462 0.00 0.00 0.00 2.59
2046 2856 7.730332 ACATACACCATCTAATGATCCTAGTCA 59.270 37.037 0.00 0.00 0.00 3.41
2047 2857 6.662865 ACACCATCTAATGATCCTAGTCAG 57.337 41.667 0.00 0.00 0.00 3.51
2048 2858 5.541868 ACACCATCTAATGATCCTAGTCAGG 59.458 44.000 0.00 0.00 44.17 3.86
2049 2859 5.541868 CACCATCTAATGATCCTAGTCAGGT 59.458 44.000 0.00 0.00 43.18 4.00
2050 2860 6.042552 CACCATCTAATGATCCTAGTCAGGTT 59.957 42.308 0.00 0.00 43.18 3.50
2051 2861 6.268847 ACCATCTAATGATCCTAGTCAGGTTC 59.731 42.308 0.00 0.00 43.18 3.62
2052 2862 6.295575 CCATCTAATGATCCTAGTCAGGTTCC 60.296 46.154 0.00 0.00 43.18 3.62
2053 2863 5.148502 TCTAATGATCCTAGTCAGGTTCCC 58.851 45.833 0.00 0.00 43.18 3.97
2054 2864 3.715648 ATGATCCTAGTCAGGTTCCCT 57.284 47.619 0.00 0.00 43.18 4.20
2055 2865 4.834406 ATGATCCTAGTCAGGTTCCCTA 57.166 45.455 0.00 0.00 43.18 3.53
2056 2866 4.186077 TGATCCTAGTCAGGTTCCCTAG 57.814 50.000 0.00 0.00 43.18 3.02
2057 2867 3.117093 TGATCCTAGTCAGGTTCCCTAGG 60.117 52.174 0.06 0.06 46.11 3.02
2058 2868 2.295143 TCCTAGTCAGGTTCCCTAGGT 58.705 52.381 8.29 0.00 45.33 3.08
2059 2869 2.244252 TCCTAGTCAGGTTCCCTAGGTC 59.756 54.545 8.29 0.00 45.33 3.85
2060 2870 2.245287 CCTAGTCAGGTTCCCTAGGTCT 59.755 54.545 8.29 0.00 41.87 3.85
2061 2871 2.239681 AGTCAGGTTCCCTAGGTCTG 57.760 55.000 8.29 9.73 29.64 3.51
2062 2872 1.433592 AGTCAGGTTCCCTAGGTCTGT 59.566 52.381 8.29 0.00 29.64 3.41
2063 2873 2.158143 AGTCAGGTTCCCTAGGTCTGTT 60.158 50.000 8.29 1.57 29.64 3.16
2064 2874 2.234168 GTCAGGTTCCCTAGGTCTGTTC 59.766 54.545 8.29 4.98 29.64 3.18
2065 2875 2.158219 TCAGGTTCCCTAGGTCTGTTCA 60.158 50.000 8.29 0.00 29.64 3.18
2066 2876 2.840651 CAGGTTCCCTAGGTCTGTTCAT 59.159 50.000 8.29 0.00 29.64 2.57
2067 2877 3.108376 AGGTTCCCTAGGTCTGTTCATC 58.892 50.000 8.29 0.00 28.47 2.92
2068 2878 2.838202 GGTTCCCTAGGTCTGTTCATCA 59.162 50.000 8.29 0.00 0.00 3.07
2069 2879 3.263425 GGTTCCCTAGGTCTGTTCATCAA 59.737 47.826 8.29 0.00 0.00 2.57
2070 2880 4.254492 GTTCCCTAGGTCTGTTCATCAAC 58.746 47.826 8.29 0.00 0.00 3.18
2071 2881 3.791320 TCCCTAGGTCTGTTCATCAACT 58.209 45.455 8.29 0.00 33.17 3.16
2072 2882 3.515502 TCCCTAGGTCTGTTCATCAACTG 59.484 47.826 8.29 0.00 33.17 3.16
2073 2883 3.515502 CCCTAGGTCTGTTCATCAACTGA 59.484 47.826 8.29 0.00 37.94 3.41
2074 2884 4.382470 CCCTAGGTCTGTTCATCAACTGAG 60.382 50.000 8.29 0.00 40.15 3.35
2079 2889 4.967437 GTCTGTTCATCAACTGAGCAATC 58.033 43.478 0.00 0.00 43.46 2.67
2080 2890 4.694509 GTCTGTTCATCAACTGAGCAATCT 59.305 41.667 0.00 0.00 43.46 2.40
2081 2891 5.180868 GTCTGTTCATCAACTGAGCAATCTT 59.819 40.000 0.00 0.00 43.46 2.40
2082 2892 5.766670 TCTGTTCATCAACTGAGCAATCTTT 59.233 36.000 0.00 0.00 43.46 2.52
2083 2893 5.765176 TGTTCATCAACTGAGCAATCTTTG 58.235 37.500 0.00 0.00 41.50 2.77
2084 2894 5.300034 TGTTCATCAACTGAGCAATCTTTGT 59.700 36.000 0.00 0.00 41.50 2.83
2085 2895 6.183360 TGTTCATCAACTGAGCAATCTTTGTT 60.183 34.615 0.00 0.00 41.50 2.83
2086 2896 6.005583 TCATCAACTGAGCAATCTTTGTTC 57.994 37.500 0.00 0.00 40.75 3.18
2087 2897 5.766670 TCATCAACTGAGCAATCTTTGTTCT 59.233 36.000 5.82 0.00 40.93 3.01
2088 2898 5.679734 TCAACTGAGCAATCTTTGTTCTC 57.320 39.130 5.82 0.00 40.93 2.87
2089 2899 5.371526 TCAACTGAGCAATCTTTGTTCTCT 58.628 37.500 5.82 0.00 40.93 3.10
2090 2900 5.824624 TCAACTGAGCAATCTTTGTTCTCTT 59.175 36.000 5.82 0.00 40.93 2.85
2091 2901 5.938438 ACTGAGCAATCTTTGTTCTCTTC 57.062 39.130 5.82 0.00 40.93 2.87
2092 2902 4.450419 ACTGAGCAATCTTTGTTCTCTTCG 59.550 41.667 5.82 0.00 40.93 3.79
2093 2903 3.187227 TGAGCAATCTTTGTTCTCTTCGC 59.813 43.478 5.82 0.00 40.93 4.70
2094 2904 2.485814 AGCAATCTTTGTTCTCTTCGCC 59.514 45.455 0.00 0.00 0.00 5.54
2095 2905 2.226437 GCAATCTTTGTTCTCTTCGCCA 59.774 45.455 0.00 0.00 0.00 5.69
2096 2906 3.304659 GCAATCTTTGTTCTCTTCGCCAA 60.305 43.478 0.00 0.00 0.00 4.52
2097 2907 4.616835 GCAATCTTTGTTCTCTTCGCCAAT 60.617 41.667 0.00 0.00 0.00 3.16
2098 2908 4.691860 ATCTTTGTTCTCTTCGCCAATG 57.308 40.909 0.00 0.00 0.00 2.82
2099 2909 3.476552 TCTTTGTTCTCTTCGCCAATGT 58.523 40.909 0.00 0.00 0.00 2.71
2100 2910 3.498397 TCTTTGTTCTCTTCGCCAATGTC 59.502 43.478 0.00 0.00 0.00 3.06
2101 2911 1.808411 TGTTCTCTTCGCCAATGTCC 58.192 50.000 0.00 0.00 0.00 4.02
2102 2912 1.071542 TGTTCTCTTCGCCAATGTCCA 59.928 47.619 0.00 0.00 0.00 4.02
2103 2913 1.464997 GTTCTCTTCGCCAATGTCCAC 59.535 52.381 0.00 0.00 0.00 4.02
2104 2914 0.684535 TCTCTTCGCCAATGTCCACA 59.315 50.000 0.00 0.00 0.00 4.17
2105 2915 1.081892 CTCTTCGCCAATGTCCACAG 58.918 55.000 0.00 0.00 0.00 3.66
2106 2916 0.955428 TCTTCGCCAATGTCCACAGC 60.955 55.000 0.00 0.00 0.00 4.40
2107 2917 0.957395 CTTCGCCAATGTCCACAGCT 60.957 55.000 0.00 0.00 0.00 4.24
2108 2918 0.955428 TTCGCCAATGTCCACAGCTC 60.955 55.000 0.00 0.00 0.00 4.09
2109 2919 2.401766 CGCCAATGTCCACAGCTCC 61.402 63.158 0.00 0.00 0.00 4.70
2110 2920 1.303561 GCCAATGTCCACAGCTCCA 60.304 57.895 0.00 0.00 0.00 3.86
2111 2921 1.310933 GCCAATGTCCACAGCTCCAG 61.311 60.000 0.00 0.00 0.00 3.86
2112 2922 0.037303 CCAATGTCCACAGCTCCAGT 59.963 55.000 0.00 0.00 0.00 4.00
2113 2923 1.546323 CCAATGTCCACAGCTCCAGTT 60.546 52.381 0.00 0.00 0.00 3.16
2114 2924 1.808945 CAATGTCCACAGCTCCAGTTC 59.191 52.381 0.00 0.00 0.00 3.01
2115 2925 0.326264 ATGTCCACAGCTCCAGTTCC 59.674 55.000 0.00 0.00 0.00 3.62
2116 2926 0.764369 TGTCCACAGCTCCAGTTCCT 60.764 55.000 0.00 0.00 0.00 3.36
2117 2927 0.036858 GTCCACAGCTCCAGTTCCTC 60.037 60.000 0.00 0.00 0.00 3.71
2118 2928 1.079543 CCACAGCTCCAGTTCCTCG 60.080 63.158 0.00 0.00 0.00 4.63
2119 2929 1.536073 CCACAGCTCCAGTTCCTCGA 61.536 60.000 0.00 0.00 0.00 4.04
2120 2930 0.534412 CACAGCTCCAGTTCCTCGAT 59.466 55.000 0.00 0.00 0.00 3.59
2121 2931 0.534412 ACAGCTCCAGTTCCTCGATG 59.466 55.000 0.00 0.00 0.00 3.84
2122 2932 0.820226 CAGCTCCAGTTCCTCGATGA 59.180 55.000 0.00 0.00 0.00 2.92
2123 2933 1.411977 CAGCTCCAGTTCCTCGATGAT 59.588 52.381 0.00 0.00 0.00 2.45
2124 2934 1.411977 AGCTCCAGTTCCTCGATGATG 59.588 52.381 0.00 0.00 0.00 3.07
2125 2935 1.863267 CTCCAGTTCCTCGATGATGC 58.137 55.000 0.00 0.00 0.00 3.91
2126 2936 0.103026 TCCAGTTCCTCGATGATGCG 59.897 55.000 0.00 0.00 0.00 4.73
2127 2937 0.179100 CCAGTTCCTCGATGATGCGT 60.179 55.000 0.00 0.00 0.00 5.24
2128 2938 1.645034 CAGTTCCTCGATGATGCGTT 58.355 50.000 0.00 0.00 0.00 4.84
2129 2939 1.325640 CAGTTCCTCGATGATGCGTTG 59.674 52.381 0.00 0.00 0.00 4.10
2130 2940 0.026803 GTTCCTCGATGATGCGTTGC 59.973 55.000 0.00 0.00 0.00 4.17
2131 2941 0.108186 TTCCTCGATGATGCGTTGCT 60.108 50.000 0.00 0.00 0.00 3.91
2132 2942 0.807275 TCCTCGATGATGCGTTGCTG 60.807 55.000 0.00 0.00 0.00 4.41
2133 2943 0.807275 CCTCGATGATGCGTTGCTGA 60.807 55.000 0.00 0.00 0.00 4.26
2134 2944 1.001624 CTCGATGATGCGTTGCTGAA 58.998 50.000 0.00 0.00 0.00 3.02
2135 2945 0.721154 TCGATGATGCGTTGCTGAAC 59.279 50.000 0.00 0.00 0.00 3.18
2136 2946 0.247814 CGATGATGCGTTGCTGAACC 60.248 55.000 0.00 0.00 0.00 3.62
2137 2947 1.089920 GATGATGCGTTGCTGAACCT 58.910 50.000 0.00 0.00 0.00 3.50
2138 2948 0.806868 ATGATGCGTTGCTGAACCTG 59.193 50.000 0.00 0.00 0.00 4.00
2139 2949 0.534877 TGATGCGTTGCTGAACCTGT 60.535 50.000 0.00 0.00 0.00 4.00
2140 2950 0.110056 GATGCGTTGCTGAACCTGTG 60.110 55.000 0.00 0.00 0.00 3.66
2141 2951 0.819259 ATGCGTTGCTGAACCTGTGT 60.819 50.000 0.00 0.00 0.00 3.72
2142 2952 1.279840 GCGTTGCTGAACCTGTGTC 59.720 57.895 0.00 0.00 0.00 3.67
2143 2953 1.436195 GCGTTGCTGAACCTGTGTCA 61.436 55.000 0.00 0.00 0.00 3.58
2144 2954 0.304705 CGTTGCTGAACCTGTGTCAC 59.695 55.000 0.00 0.00 0.00 3.67
2145 2955 1.378531 GTTGCTGAACCTGTGTCACA 58.621 50.000 5.36 5.36 0.00 3.58
2146 2956 1.331756 GTTGCTGAACCTGTGTCACAG 59.668 52.381 23.72 23.72 45.53 3.66
2162 2972 2.910688 ACAGAGGATGTGACGTTGTT 57.089 45.000 0.00 0.00 41.91 2.83
2163 2973 2.483876 ACAGAGGATGTGACGTTGTTG 58.516 47.619 0.00 0.00 41.91 3.33
2164 2974 2.102420 ACAGAGGATGTGACGTTGTTGA 59.898 45.455 0.00 0.00 41.91 3.18
2165 2975 3.130633 CAGAGGATGTGACGTTGTTGAA 58.869 45.455 0.00 0.00 0.00 2.69
2166 2976 3.185188 CAGAGGATGTGACGTTGTTGAAG 59.815 47.826 0.00 0.00 0.00 3.02
2167 2977 3.069586 AGAGGATGTGACGTTGTTGAAGA 59.930 43.478 0.00 0.00 0.00 2.87
2168 2978 3.997021 GAGGATGTGACGTTGTTGAAGAT 59.003 43.478 0.00 0.00 0.00 2.40
2169 2979 4.389374 AGGATGTGACGTTGTTGAAGATT 58.611 39.130 0.00 0.00 0.00 2.40
2170 2980 4.821805 AGGATGTGACGTTGTTGAAGATTT 59.178 37.500 0.00 0.00 0.00 2.17
2272 3082 5.878406 TTCTGGCCAAGTAAATTCCAAAA 57.122 34.783 7.01 0.00 0.00 2.44
2306 3116 4.783764 ACTTACCTAGTTGCAAAATGGC 57.216 40.909 0.00 0.00 31.29 4.40
2630 3448 8.839343 TGTTCAACATGCAAGGTATAATGATAG 58.161 33.333 0.00 0.00 0.00 2.08
2639 3457 8.188799 TGCAAGGTATAATGATAGTATAGACGC 58.811 37.037 0.00 0.00 0.00 5.19
2673 3491 3.710209 AGGCACTTATTTCAGCTCTGT 57.290 42.857 0.00 0.00 27.25 3.41
2694 3512 6.545666 TCTGTTCTGTTCCAAATTTTCTAGCA 59.454 34.615 0.00 0.00 0.00 3.49
2714 3532 3.490348 CAAGACCACAGAAATCTGGGTT 58.510 45.455 18.51 4.07 45.69 4.11
2736 3565 3.582647 TGCAGAACCCTGACATTCTTCTA 59.417 43.478 0.00 0.00 43.02 2.10
2757 3586 7.921786 TCTATGTTCCACTTGGACATAAAAG 57.078 36.000 15.47 9.93 45.39 2.27
2929 3760 2.039084 CACTTAGCCTGTCTTGGTTCCT 59.961 50.000 0.00 0.00 0.00 3.36
2958 3789 2.112380 TCCGATGTGCATGTGTTCAT 57.888 45.000 0.00 0.00 34.21 2.57
3534 4366 1.303236 TTGCTCGTCAATGGGGTGG 60.303 57.895 0.00 0.00 0.00 4.61
3554 4386 6.239458 GGGTGGGTTCATTTCATTTAGTTTCA 60.239 38.462 0.00 0.00 0.00 2.69
3563 4395 9.619316 TCATTTCATTTAGTTTCATTAACGTGG 57.381 29.630 0.00 0.00 41.78 4.94
3599 4431 8.554490 TCTAGCTGATTTTAGACCTATCCTTT 57.446 34.615 0.00 0.00 0.00 3.11
3737 4569 8.641498 AACTTGTTCTTTCACCATTATCTGAT 57.359 30.769 0.00 0.00 0.00 2.90
3817 4649 2.925578 TATGATTGTTGTGCAGCAGC 57.074 45.000 0.00 0.00 42.57 5.25
3841 4673 0.527817 GCGGACCGACAGAAGTATGG 60.528 60.000 20.50 0.00 0.00 2.74
3873 4706 9.416284 ACTTCACTTCTTAACCCTTTGAAATTA 57.584 29.630 0.00 0.00 0.00 1.40
3899 4732 4.099881 GCCCCTTAATGCAATTTCTCATGA 59.900 41.667 0.00 0.00 37.87 3.07
4010 4843 3.746492 AGAGTGGATTTGTGTACGAAAGC 59.254 43.478 0.00 0.00 0.00 3.51
4028 4861 4.039092 GAGGAGCCTGCCCAGCAA 62.039 66.667 0.00 0.00 38.41 3.91
4211 5045 8.110860 TCCTTGTGGAAAGAAATACAATTCTC 57.889 34.615 0.00 0.00 39.87 2.87
4444 5278 1.085091 GCATCTGTGGCAAGACTCAG 58.915 55.000 0.00 0.00 0.00 3.35
4500 5335 0.399454 AGGCAGATGCAGAGTGTTGT 59.601 50.000 7.19 0.00 44.36 3.32
4573 6440 4.097286 GTGAGGTTACCAAAACACACACAT 59.903 41.667 3.51 0.00 33.06 3.21
4671 6568 2.888834 ACAATTGCGGCAAAGTCTTT 57.111 40.000 20.48 6.08 0.00 2.52
4727 6624 6.016777 GGGATAACTTGCTAACAATCCATGAG 60.017 42.308 0.00 0.00 34.29 2.90
4815 6716 1.448922 CGGTTTTGGGAGTCGCCAAA 61.449 55.000 17.11 17.11 38.95 3.28
4825 6726 0.598065 AGTCGCCAAATTGAAGGTGC 59.402 50.000 0.00 0.00 35.41 5.01
4843 6744 1.249407 GCAGAGGTACCCGATCCTAG 58.751 60.000 8.74 0.00 33.83 3.02
4856 6777 3.257873 CCGATCCTAGTCTGATGAGCAAT 59.742 47.826 0.00 0.00 0.00 3.56
4945 6882 1.276138 TGATGTTCATCCTCAGCACGT 59.724 47.619 9.83 0.00 0.00 4.49
4947 6884 2.363788 TGTTCATCCTCAGCACGTAC 57.636 50.000 0.00 0.00 0.00 3.67
4948 6885 1.269166 GTTCATCCTCAGCACGTACG 58.731 55.000 15.01 15.01 0.00 3.67
5056 7004 1.145598 CGCACTCATGGAGATGGCT 59.854 57.895 0.00 0.00 33.32 4.75
5071 7019 1.449778 GGCTGTAGTTCTTCGGCCC 60.450 63.158 15.36 2.01 46.79 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.739913 CACCGCTTTCCAGTAAAATCGA 59.260 45.455 0.00 0.00 0.00 3.59
1 2 2.482721 ACACCGCTTTCCAGTAAAATCG 59.517 45.455 0.00 0.00 0.00 3.34
2 3 4.226761 CAACACCGCTTTCCAGTAAAATC 58.773 43.478 0.00 0.00 0.00 2.17
3 4 3.634910 ACAACACCGCTTTCCAGTAAAAT 59.365 39.130 0.00 0.00 0.00 1.82
4 5 3.018149 ACAACACCGCTTTCCAGTAAAA 58.982 40.909 0.00 0.00 0.00 1.52
5 6 2.356382 CACAACACCGCTTTCCAGTAAA 59.644 45.455 0.00 0.00 0.00 2.01
6 7 1.944024 CACAACACCGCTTTCCAGTAA 59.056 47.619 0.00 0.00 0.00 2.24
7 8 1.139256 TCACAACACCGCTTTCCAGTA 59.861 47.619 0.00 0.00 0.00 2.74
8 9 0.107410 TCACAACACCGCTTTCCAGT 60.107 50.000 0.00 0.00 0.00 4.00
9 10 0.588252 CTCACAACACCGCTTTCCAG 59.412 55.000 0.00 0.00 0.00 3.86
10 11 0.817634 CCTCACAACACCGCTTTCCA 60.818 55.000 0.00 0.00 0.00 3.53
11 12 1.515521 CCCTCACAACACCGCTTTCC 61.516 60.000 0.00 0.00 0.00 3.13
12 13 0.818040 ACCCTCACAACACCGCTTTC 60.818 55.000 0.00 0.00 0.00 2.62
13 14 1.101049 CACCCTCACAACACCGCTTT 61.101 55.000 0.00 0.00 0.00 3.51
14 15 1.525995 CACCCTCACAACACCGCTT 60.526 57.895 0.00 0.00 0.00 4.68
15 16 2.111043 CACCCTCACAACACCGCT 59.889 61.111 0.00 0.00 0.00 5.52
16 17 2.203153 ACACCCTCACAACACCGC 60.203 61.111 0.00 0.00 0.00 5.68
17 18 1.597027 GGACACCCTCACAACACCG 60.597 63.158 0.00 0.00 0.00 4.94
18 19 1.228154 GGGACACCCTCACAACACC 60.228 63.158 0.00 0.00 41.34 4.16
19 20 0.106918 TTGGGACACCCTCACAACAC 60.107 55.000 8.34 0.00 45.70 3.32
20 21 2.312323 TTGGGACACCCTCACAACA 58.688 52.632 8.34 0.00 45.70 3.33
22 23 0.472471 GAGTTGGGACACCCTCACAA 59.528 55.000 8.34 0.00 45.70 3.33
23 24 1.415672 GGAGTTGGGACACCCTCACA 61.416 60.000 8.34 0.00 45.70 3.58
24 25 1.128188 AGGAGTTGGGACACCCTCAC 61.128 60.000 8.34 5.23 45.70 3.51
25 26 1.127567 CAGGAGTTGGGACACCCTCA 61.128 60.000 8.34 0.00 45.70 3.86
26 27 1.679898 CAGGAGTTGGGACACCCTC 59.320 63.158 8.34 2.13 45.70 4.30
27 28 2.529744 GCAGGAGTTGGGACACCCT 61.530 63.158 8.34 0.00 45.70 4.34
28 29 2.034221 GCAGGAGTTGGGACACCC 59.966 66.667 0.00 0.00 45.71 4.61
29 30 0.890996 CTTGCAGGAGTTGGGACACC 60.891 60.000 0.00 0.00 39.29 4.16
30 31 0.179018 ACTTGCAGGAGTTGGGACAC 60.179 55.000 1.40 0.00 39.29 3.67
31 32 0.179020 CACTTGCAGGAGTTGGGACA 60.179 55.000 1.40 0.00 0.00 4.02
81 82 1.952102 TTGTAGGATCGTCACCCGCC 61.952 60.000 0.00 0.00 36.19 6.13
110 111 2.084681 GCAGCAGCAACAACATCGC 61.085 57.895 0.00 0.00 41.58 4.58
143 144 4.021016 ACTCACTTCTCCGCTTGTAGAATT 60.021 41.667 0.00 0.00 31.60 2.17
144 145 3.511934 ACTCACTTCTCCGCTTGTAGAAT 59.488 43.478 0.00 0.00 31.60 2.40
168 169 0.814010 ACTCACAAACAGTCGCCACC 60.814 55.000 0.00 0.00 0.00 4.61
173 174 1.800586 CCATCCACTCACAAACAGTCG 59.199 52.381 0.00 0.00 0.00 4.18
178 179 1.586154 CCCGCCATCCACTCACAAAC 61.586 60.000 0.00 0.00 0.00 2.93
201 202 3.751175 CCCTTTTCGCAACATCTCTTGTA 59.249 43.478 0.00 0.00 37.68 2.41
207 208 1.351017 TCTCCCCTTTTCGCAACATCT 59.649 47.619 0.00 0.00 0.00 2.90
248 249 4.925786 GCGTCATTTGTCGCGTAG 57.074 55.556 5.77 0.00 41.85 3.51
269 271 1.737793 GACGACCCCTTTGCTACATTG 59.262 52.381 0.00 0.00 0.00 2.82
270 272 1.674817 CGACGACCCCTTTGCTACATT 60.675 52.381 0.00 0.00 0.00 2.71
275 277 1.590147 CTACGACGACCCCTTTGCT 59.410 57.895 0.00 0.00 0.00 3.91
308 310 3.047280 GTTGTGCGGCATCGGTCA 61.047 61.111 5.72 0.00 36.79 4.02
325 327 1.293924 GATGTCTGATGGTTGCTCCG 58.706 55.000 0.00 0.00 39.52 4.63
345 347 1.802960 CCGCCACTCTATTGCATCATC 59.197 52.381 0.00 0.00 0.00 2.92
368 370 1.668919 GCGACTCGTTGAATCACCAGA 60.669 52.381 0.00 0.00 0.00 3.86
409 411 3.561213 CAGCATGTCGGCGAGCAG 61.561 66.667 19.62 9.59 39.27 4.24
445 447 1.971167 GAATCACCTGCGCACCCAA 60.971 57.895 5.66 0.00 0.00 4.12
505 516 1.446907 CACCCTCATGTTGAGCTCAC 58.553 55.000 18.03 12.36 42.98 3.51
506 517 0.325933 CCACCCTCATGTTGAGCTCA 59.674 55.000 13.74 13.74 42.98 4.26
519 530 0.762842 TGCCGTCATATAGCCACCCT 60.763 55.000 0.00 0.00 0.00 4.34
527 538 3.431415 AGAGGTATGCTGCCGTCATATA 58.569 45.455 0.00 0.00 0.00 0.86
547 558 0.796870 TCGTCGTCGTAGCATGCAAG 60.797 55.000 21.98 10.57 38.33 4.01
564 575 4.794439 TCGCGGCATGGACAGTCG 62.794 66.667 6.13 0.00 0.00 4.18
567 578 2.584418 CTCTCGCGGCATGGACAG 60.584 66.667 6.13 0.00 0.00 3.51
583 594 4.400961 GCAAGAGTCAGCGCCCCT 62.401 66.667 2.29 0.00 0.00 4.79
591 602 0.252239 TGGCCTCCTAGCAAGAGTCA 60.252 55.000 3.32 0.00 0.00 3.41
595 606 1.596934 CGTTGGCCTCCTAGCAAGA 59.403 57.895 3.32 0.00 0.00 3.02
669 680 2.039818 ATCGACCTCTCTCGTAGCAA 57.960 50.000 0.00 0.00 35.10 3.91
687 698 0.172803 ACGCCGCTCGAGAAACTTAT 59.827 50.000 18.75 0.00 41.67 1.73
709 720 0.036952 ACTCCTCATCACGGCAACTG 60.037 55.000 0.00 0.00 0.00 3.16
740 751 1.133730 CCTACTCCCTTCTAGCTCCGT 60.134 57.143 0.00 0.00 0.00 4.69
748 759 1.292546 CCTTCTCCCCTACTCCCTTCT 59.707 57.143 0.00 0.00 0.00 2.85
782 795 1.271379 TCGATGCGACACACCTAAACT 59.729 47.619 0.00 0.00 0.00 2.66
811 824 2.029828 CGAGAACTAATCAGCCGCCTAT 60.030 50.000 0.00 0.00 0.00 2.57
853 874 3.602483 GTTCCCAAATAGGTCAACGCTA 58.398 45.455 0.00 0.00 34.66 4.26
861 882 0.622136 GGACCCGTTCCCAAATAGGT 59.378 55.000 0.00 0.00 38.70 3.08
866 887 0.179012 GAGTTGGACCCGTTCCCAAA 60.179 55.000 0.00 0.00 45.17 3.28
881 902 5.706833 TGTATGCAGTGAAATGTCATGAGTT 59.293 36.000 0.00 0.00 35.80 3.01
942 1597 1.229051 ATTGGGGAACGGGTTTGGG 60.229 57.895 0.00 0.00 0.00 4.12
1000 1803 0.677288 TCGACACAAGATGGAACGGT 59.323 50.000 0.00 0.00 0.00 4.83
1171 1974 2.738521 CGGAGAGTTGTGTGGCGG 60.739 66.667 0.00 0.00 0.00 6.13
1542 2349 1.705256 TTCGGCACACTATCGTTCAC 58.295 50.000 0.00 0.00 0.00 3.18
1563 2370 0.110644 GCGTTTGCAGAAAGAGGTCG 60.111 55.000 0.00 0.00 42.15 4.79
1566 2373 1.441016 GCGCGTTTGCAGAAAGAGG 60.441 57.895 8.43 0.00 42.97 3.69
1596 2403 3.688235 AGTATAGTCATCTACGAGGCCC 58.312 50.000 0.00 0.00 0.00 5.80
1633 2440 7.390440 TCCATTATAATCACAAACCGATCCATC 59.610 37.037 0.00 0.00 0.00 3.51
1822 2630 9.533253 CCATTCATCGCCTATTTTAAAAGATTT 57.467 29.630 6.79 0.00 0.00 2.17
1894 2704 1.003972 CGCTGACAGCTTTTCGTCAAA 60.004 47.619 24.36 0.00 41.39 2.69
1895 2705 0.581529 CGCTGACAGCTTTTCGTCAA 59.418 50.000 24.36 0.00 41.39 3.18
1896 2706 1.831389 GCGCTGACAGCTTTTCGTCA 61.831 55.000 24.36 4.71 39.60 4.35
1897 2707 1.154580 GCGCTGACAGCTTTTCGTC 60.155 57.895 24.36 2.63 39.60 4.20
1898 2708 1.835483 CTGCGCTGACAGCTTTTCGT 61.835 55.000 24.36 0.00 39.60 3.85
1899 2709 1.154525 CTGCGCTGACAGCTTTTCG 60.155 57.895 24.36 10.12 39.60 3.46
1900 2710 4.834828 CTGCGCTGACAGCTTTTC 57.165 55.556 24.36 11.43 39.60 2.29
1906 2716 0.450583 ATGAAATGCTGCGCTGACAG 59.549 50.000 19.32 2.87 40.80 3.51
1907 2717 0.883153 AATGAAATGCTGCGCTGACA 59.117 45.000 19.32 15.15 0.00 3.58
1908 2718 1.135603 TCAATGAAATGCTGCGCTGAC 60.136 47.619 19.32 9.87 0.00 3.51
1909 2719 1.166989 TCAATGAAATGCTGCGCTGA 58.833 45.000 19.32 1.07 0.00 4.26
1910 2720 1.985334 TTCAATGAAATGCTGCGCTG 58.015 45.000 9.73 10.04 0.00 5.18
1911 2721 2.953466 ATTCAATGAAATGCTGCGCT 57.047 40.000 9.73 0.00 0.00 5.92
1912 2722 9.888878 ATATATATATTCAATGAAATGCTGCGC 57.111 29.630 0.00 0.00 0.00 6.09
1935 2745 9.661954 TCTGTACCAAATTTCCTCTCTCTATAT 57.338 33.333 0.00 0.00 0.00 0.86
1936 2746 9.137459 CTCTGTACCAAATTTCCTCTCTCTATA 57.863 37.037 0.00 0.00 0.00 1.31
1937 2747 7.418483 GCTCTGTACCAAATTTCCTCTCTCTAT 60.418 40.741 0.00 0.00 0.00 1.98
1938 2748 6.127310 GCTCTGTACCAAATTTCCTCTCTCTA 60.127 42.308 0.00 0.00 0.00 2.43
1939 2749 5.337975 GCTCTGTACCAAATTTCCTCTCTCT 60.338 44.000 0.00 0.00 0.00 3.10
1940 2750 4.873259 GCTCTGTACCAAATTTCCTCTCTC 59.127 45.833 0.00 0.00 0.00 3.20
1941 2751 4.287067 TGCTCTGTACCAAATTTCCTCTCT 59.713 41.667 0.00 0.00 0.00 3.10
1942 2752 4.579869 TGCTCTGTACCAAATTTCCTCTC 58.420 43.478 0.00 0.00 0.00 3.20
1943 2753 4.640771 TGCTCTGTACCAAATTTCCTCT 57.359 40.909 0.00 0.00 0.00 3.69
1944 2754 5.880332 TGTATGCTCTGTACCAAATTTCCTC 59.120 40.000 0.00 0.00 0.00 3.71
1945 2755 5.648092 GTGTATGCTCTGTACCAAATTTCCT 59.352 40.000 0.00 0.00 0.00 3.36
1946 2756 5.163652 GGTGTATGCTCTGTACCAAATTTCC 60.164 44.000 0.00 0.00 0.00 3.13
1947 2757 5.648092 AGGTGTATGCTCTGTACCAAATTTC 59.352 40.000 0.00 0.00 33.88 2.17
1948 2758 5.570320 AGGTGTATGCTCTGTACCAAATTT 58.430 37.500 0.00 0.00 33.88 1.82
1949 2759 5.179452 AGGTGTATGCTCTGTACCAAATT 57.821 39.130 0.00 0.00 33.88 1.82
1950 2760 4.844349 AGGTGTATGCTCTGTACCAAAT 57.156 40.909 0.00 0.00 33.88 2.32
1951 2761 5.748670 TTAGGTGTATGCTCTGTACCAAA 57.251 39.130 0.00 0.00 33.88 3.28
1952 2762 5.748670 TTTAGGTGTATGCTCTGTACCAA 57.251 39.130 0.00 0.00 33.88 3.67
1953 2763 5.163343 GGATTTAGGTGTATGCTCTGTACCA 60.163 44.000 0.00 0.00 33.88 3.25
1954 2764 5.298347 GGATTTAGGTGTATGCTCTGTACC 58.702 45.833 0.00 0.00 0.00 3.34
1955 2765 5.298347 GGGATTTAGGTGTATGCTCTGTAC 58.702 45.833 0.00 0.00 0.00 2.90
1956 2766 4.347000 GGGGATTTAGGTGTATGCTCTGTA 59.653 45.833 0.00 0.00 0.00 2.74
1957 2767 3.136626 GGGGATTTAGGTGTATGCTCTGT 59.863 47.826 0.00 0.00 0.00 3.41
1958 2768 3.136443 TGGGGATTTAGGTGTATGCTCTG 59.864 47.826 0.00 0.00 0.00 3.35
1959 2769 3.392616 CTGGGGATTTAGGTGTATGCTCT 59.607 47.826 0.00 0.00 0.00 4.09
1960 2770 3.744660 CTGGGGATTTAGGTGTATGCTC 58.255 50.000 0.00 0.00 0.00 4.26
1961 2771 2.158608 GCTGGGGATTTAGGTGTATGCT 60.159 50.000 0.00 0.00 0.00 3.79
1962 2772 2.230660 GCTGGGGATTTAGGTGTATGC 58.769 52.381 0.00 0.00 0.00 3.14
1963 2773 3.576078 TGCTGGGGATTTAGGTGTATG 57.424 47.619 0.00 0.00 0.00 2.39
1964 2774 3.117512 CCTTGCTGGGGATTTAGGTGTAT 60.118 47.826 0.00 0.00 0.00 2.29
1965 2775 2.241176 CCTTGCTGGGGATTTAGGTGTA 59.759 50.000 0.00 0.00 0.00 2.90
1966 2776 1.005924 CCTTGCTGGGGATTTAGGTGT 59.994 52.381 0.00 0.00 0.00 4.16
1967 2777 1.767759 CCTTGCTGGGGATTTAGGTG 58.232 55.000 0.00 0.00 0.00 4.00
1977 2787 8.923472 GATGATCATCTTTTATCCCTTGCTGGG 61.923 44.444 25.47 8.78 44.54 4.45
1978 2788 5.135383 TGATCATCTTTTATCCCTTGCTGG 58.865 41.667 0.00 0.00 0.00 4.85
1979 2789 6.072064 GGATGATCATCTTTTATCCCTTGCTG 60.072 42.308 29.85 0.00 37.92 4.41
1980 2790 6.008960 GGATGATCATCTTTTATCCCTTGCT 58.991 40.000 29.85 0.00 37.92 3.91
1981 2791 6.264841 GGATGATCATCTTTTATCCCTTGC 57.735 41.667 29.85 9.28 37.92 4.01
1990 2800 8.260114 GGTGTTAAAATGGGATGATCATCTTTT 58.740 33.333 29.85 27.18 37.92 2.27
1991 2801 7.147672 GGGTGTTAAAATGGGATGATCATCTTT 60.148 37.037 29.85 23.78 37.92 2.52
1992 2802 6.324770 GGGTGTTAAAATGGGATGATCATCTT 59.675 38.462 29.85 19.88 37.92 2.40
1993 2803 5.835280 GGGTGTTAAAATGGGATGATCATCT 59.165 40.000 29.85 15.05 37.92 2.90
1994 2804 5.598005 TGGGTGTTAAAATGGGATGATCATC 59.402 40.000 24.90 24.90 37.11 2.92
1995 2805 5.527385 TGGGTGTTAAAATGGGATGATCAT 58.473 37.500 8.25 8.25 0.00 2.45
1996 2806 4.940483 TGGGTGTTAAAATGGGATGATCA 58.060 39.130 0.00 0.00 0.00 2.92
1997 2807 6.549364 TGTATGGGTGTTAAAATGGGATGATC 59.451 38.462 0.00 0.00 0.00 2.92
1998 2808 6.439487 TGTATGGGTGTTAAAATGGGATGAT 58.561 36.000 0.00 0.00 0.00 2.45
1999 2809 5.832221 TGTATGGGTGTTAAAATGGGATGA 58.168 37.500 0.00 0.00 0.00 2.92
2000 2810 6.729690 ATGTATGGGTGTTAAAATGGGATG 57.270 37.500 0.00 0.00 0.00 3.51
2001 2811 7.286775 GTGTATGTATGGGTGTTAAAATGGGAT 59.713 37.037 0.00 0.00 0.00 3.85
2002 2812 6.603997 GTGTATGTATGGGTGTTAAAATGGGA 59.396 38.462 0.00 0.00 0.00 4.37
2003 2813 6.183360 GGTGTATGTATGGGTGTTAAAATGGG 60.183 42.308 0.00 0.00 0.00 4.00
2004 2814 6.378564 TGGTGTATGTATGGGTGTTAAAATGG 59.621 38.462 0.00 0.00 0.00 3.16
2005 2815 7.397892 TGGTGTATGTATGGGTGTTAAAATG 57.602 36.000 0.00 0.00 0.00 2.32
2006 2816 8.058847 AGATGGTGTATGTATGGGTGTTAAAAT 58.941 33.333 0.00 0.00 0.00 1.82
2007 2817 7.406916 AGATGGTGTATGTATGGGTGTTAAAA 58.593 34.615 0.00 0.00 0.00 1.52
2008 2818 6.964464 AGATGGTGTATGTATGGGTGTTAAA 58.036 36.000 0.00 0.00 0.00 1.52
2009 2819 6.569127 AGATGGTGTATGTATGGGTGTTAA 57.431 37.500 0.00 0.00 0.00 2.01
2010 2820 7.678207 TTAGATGGTGTATGTATGGGTGTTA 57.322 36.000 0.00 0.00 0.00 2.41
2011 2821 6.569127 TTAGATGGTGTATGTATGGGTGTT 57.431 37.500 0.00 0.00 0.00 3.32
2012 2822 6.328934 TCATTAGATGGTGTATGTATGGGTGT 59.671 38.462 0.00 0.00 0.00 4.16
2013 2823 6.768483 TCATTAGATGGTGTATGTATGGGTG 58.232 40.000 0.00 0.00 0.00 4.61
2014 2824 7.311297 GGATCATTAGATGGTGTATGTATGGGT 60.311 40.741 0.00 0.00 33.72 4.51
2015 2825 7.050377 GGATCATTAGATGGTGTATGTATGGG 58.950 42.308 0.00 0.00 33.72 4.00
2016 2826 7.855375 AGGATCATTAGATGGTGTATGTATGG 58.145 38.462 0.00 0.00 33.72 2.74
2018 2828 9.775539 ACTAGGATCATTAGATGGTGTATGTAT 57.224 33.333 9.68 0.00 33.72 2.29
2019 2829 9.244292 GACTAGGATCATTAGATGGTGTATGTA 57.756 37.037 9.68 0.00 33.72 2.29
2020 2830 7.730332 TGACTAGGATCATTAGATGGTGTATGT 59.270 37.037 9.68 0.00 33.72 2.29
2021 2831 8.127150 TGACTAGGATCATTAGATGGTGTATG 57.873 38.462 9.68 0.00 33.72 2.39
2022 2832 8.359875 CTGACTAGGATCATTAGATGGTGTAT 57.640 38.462 9.68 0.00 33.72 2.29
2023 2833 7.767250 CTGACTAGGATCATTAGATGGTGTA 57.233 40.000 9.68 0.00 33.72 2.90
2024 2834 6.662865 CTGACTAGGATCATTAGATGGTGT 57.337 41.667 9.68 0.00 33.72 4.16
2045 2855 8.963455 GTTGATGAACAGACCTAGGGAACCTG 62.963 50.000 14.81 15.74 45.80 4.00
2047 2857 4.863482 GTTGATGAACAGACCTAGGGAACC 60.863 50.000 14.81 0.00 39.73 3.62
2048 2858 4.020128 AGTTGATGAACAGACCTAGGGAAC 60.020 45.833 14.81 4.24 34.17 3.62
2049 2859 4.020218 CAGTTGATGAACAGACCTAGGGAA 60.020 45.833 14.81 0.00 34.17 3.97
2050 2860 3.515502 CAGTTGATGAACAGACCTAGGGA 59.484 47.826 14.81 0.00 34.17 4.20
2051 2861 3.515502 TCAGTTGATGAACAGACCTAGGG 59.484 47.826 14.81 0.00 34.02 3.53
2052 2862 4.753233 CTCAGTTGATGAACAGACCTAGG 58.247 47.826 7.41 7.41 37.52 3.02
2053 2863 4.180057 GCTCAGTTGATGAACAGACCTAG 58.820 47.826 0.00 0.00 37.52 3.02
2054 2864 3.578282 TGCTCAGTTGATGAACAGACCTA 59.422 43.478 0.00 0.00 37.52 3.08
2055 2865 2.369860 TGCTCAGTTGATGAACAGACCT 59.630 45.455 0.00 0.00 37.52 3.85
2056 2866 2.771089 TGCTCAGTTGATGAACAGACC 58.229 47.619 0.00 0.00 37.52 3.85
2057 2867 4.694509 AGATTGCTCAGTTGATGAACAGAC 59.305 41.667 0.00 0.00 35.50 3.51
2058 2868 4.903054 AGATTGCTCAGTTGATGAACAGA 58.097 39.130 0.00 0.00 35.50 3.41
2059 2869 5.624344 AAGATTGCTCAGTTGATGAACAG 57.376 39.130 0.00 0.00 35.50 3.16
2060 2870 5.300034 ACAAAGATTGCTCAGTTGATGAACA 59.700 36.000 0.00 0.00 37.52 3.18
2061 2871 5.766222 ACAAAGATTGCTCAGTTGATGAAC 58.234 37.500 0.00 0.00 37.52 3.18
2062 2872 6.263842 AGAACAAAGATTGCTCAGTTGATGAA 59.736 34.615 0.00 0.00 37.52 2.57
2063 2873 5.766670 AGAACAAAGATTGCTCAGTTGATGA 59.233 36.000 0.00 0.00 36.21 2.92
2064 2874 6.010294 AGAACAAAGATTGCTCAGTTGATG 57.990 37.500 0.00 0.00 0.00 3.07
2065 2875 6.002704 AGAGAACAAAGATTGCTCAGTTGAT 58.997 36.000 0.00 0.00 0.00 2.57
2066 2876 5.371526 AGAGAACAAAGATTGCTCAGTTGA 58.628 37.500 0.00 0.00 0.00 3.18
2067 2877 5.686159 AGAGAACAAAGATTGCTCAGTTG 57.314 39.130 0.00 0.00 0.00 3.16
2068 2878 5.049818 CGAAGAGAACAAAGATTGCTCAGTT 60.050 40.000 0.00 0.00 0.00 3.16
2069 2879 4.450419 CGAAGAGAACAAAGATTGCTCAGT 59.550 41.667 0.00 0.00 0.00 3.41
2070 2880 4.668686 GCGAAGAGAACAAAGATTGCTCAG 60.669 45.833 0.00 0.00 0.00 3.35
2071 2881 3.187227 GCGAAGAGAACAAAGATTGCTCA 59.813 43.478 0.00 0.00 0.00 4.26
2072 2882 3.425492 GGCGAAGAGAACAAAGATTGCTC 60.425 47.826 0.00 0.00 0.00 4.26
2073 2883 2.485814 GGCGAAGAGAACAAAGATTGCT 59.514 45.455 0.00 0.00 0.00 3.91
2074 2884 2.226437 TGGCGAAGAGAACAAAGATTGC 59.774 45.455 0.00 0.00 0.00 3.56
2075 2885 4.488126 TTGGCGAAGAGAACAAAGATTG 57.512 40.909 0.00 0.00 0.00 2.67
2076 2886 4.520492 ACATTGGCGAAGAGAACAAAGATT 59.480 37.500 0.00 0.00 0.00 2.40
2077 2887 4.074970 ACATTGGCGAAGAGAACAAAGAT 58.925 39.130 0.00 0.00 0.00 2.40
2078 2888 3.476552 ACATTGGCGAAGAGAACAAAGA 58.523 40.909 0.00 0.00 0.00 2.52
2079 2889 3.365364 GGACATTGGCGAAGAGAACAAAG 60.365 47.826 0.00 0.00 0.00 2.77
2080 2890 2.552315 GGACATTGGCGAAGAGAACAAA 59.448 45.455 0.00 0.00 0.00 2.83
2081 2891 2.151202 GGACATTGGCGAAGAGAACAA 58.849 47.619 0.00 0.00 0.00 2.83
2082 2892 1.071542 TGGACATTGGCGAAGAGAACA 59.928 47.619 0.00 0.00 0.00 3.18
2083 2893 1.464997 GTGGACATTGGCGAAGAGAAC 59.535 52.381 0.00 0.00 0.00 3.01
2084 2894 1.071542 TGTGGACATTGGCGAAGAGAA 59.928 47.619 0.00 0.00 0.00 2.87
2085 2895 0.684535 TGTGGACATTGGCGAAGAGA 59.315 50.000 0.00 0.00 0.00 3.10
2086 2896 1.081892 CTGTGGACATTGGCGAAGAG 58.918 55.000 0.00 0.00 0.00 2.85
2087 2897 0.955428 GCTGTGGACATTGGCGAAGA 60.955 55.000 0.00 0.00 0.00 2.87
2088 2898 0.957395 AGCTGTGGACATTGGCGAAG 60.957 55.000 0.00 0.00 0.00 3.79
2089 2899 0.955428 GAGCTGTGGACATTGGCGAA 60.955 55.000 0.00 0.00 0.00 4.70
2090 2900 1.375908 GAGCTGTGGACATTGGCGA 60.376 57.895 0.00 0.00 0.00 5.54
2091 2901 2.401766 GGAGCTGTGGACATTGGCG 61.402 63.158 0.00 0.00 0.00 5.69
2092 2902 1.303561 TGGAGCTGTGGACATTGGC 60.304 57.895 0.00 0.00 0.00 4.52
2093 2903 0.037303 ACTGGAGCTGTGGACATTGG 59.963 55.000 0.00 0.00 0.00 3.16
2094 2904 1.808945 GAACTGGAGCTGTGGACATTG 59.191 52.381 0.00 0.00 0.00 2.82
2095 2905 1.271597 GGAACTGGAGCTGTGGACATT 60.272 52.381 0.00 0.00 0.00 2.71
2096 2906 0.326264 GGAACTGGAGCTGTGGACAT 59.674 55.000 0.00 0.00 0.00 3.06
2097 2907 0.764369 AGGAACTGGAGCTGTGGACA 60.764 55.000 0.00 0.00 37.18 4.02
2098 2908 0.036858 GAGGAACTGGAGCTGTGGAC 60.037 60.000 0.00 0.00 41.55 4.02
2099 2909 1.536073 CGAGGAACTGGAGCTGTGGA 61.536 60.000 0.00 0.00 41.55 4.02
2100 2910 1.079543 CGAGGAACTGGAGCTGTGG 60.080 63.158 0.00 0.00 41.55 4.17
2101 2911 1.967535 TCGAGGAACTGGAGCTGTG 59.032 57.895 0.00 0.00 41.55 3.66
2102 2912 4.521559 TCGAGGAACTGGAGCTGT 57.478 55.556 0.00 0.00 41.55 4.40
2108 2918 0.179100 ACGCATCATCGAGGAACTGG 60.179 55.000 2.91 0.00 41.55 4.00
2109 2919 1.325640 CAACGCATCATCGAGGAACTG 59.674 52.381 2.91 0.00 41.55 3.16
2111 2921 0.026803 GCAACGCATCATCGAGGAAC 59.973 55.000 2.91 0.00 0.00 3.62
2112 2922 0.108186 AGCAACGCATCATCGAGGAA 60.108 50.000 2.91 0.00 0.00 3.36
2113 2923 0.807275 CAGCAACGCATCATCGAGGA 60.807 55.000 0.65 0.65 0.00 3.71
2114 2924 0.807275 TCAGCAACGCATCATCGAGG 60.807 55.000 0.00 0.00 0.00 4.63
2115 2925 1.001624 TTCAGCAACGCATCATCGAG 58.998 50.000 0.00 0.00 0.00 4.04
2116 2926 0.721154 GTTCAGCAACGCATCATCGA 59.279 50.000 0.00 0.00 0.00 3.59
2117 2927 0.247814 GGTTCAGCAACGCATCATCG 60.248 55.000 0.00 0.00 32.68 3.84
2118 2928 1.089920 AGGTTCAGCAACGCATCATC 58.910 50.000 0.00 0.00 32.68 2.92
2119 2929 0.806868 CAGGTTCAGCAACGCATCAT 59.193 50.000 0.00 0.00 32.68 2.45
2120 2930 0.534877 ACAGGTTCAGCAACGCATCA 60.535 50.000 0.00 0.00 32.68 3.07
2121 2931 0.110056 CACAGGTTCAGCAACGCATC 60.110 55.000 0.00 0.00 32.68 3.91
2122 2932 0.819259 ACACAGGTTCAGCAACGCAT 60.819 50.000 0.00 0.00 32.68 4.73
2123 2933 1.436195 GACACAGGTTCAGCAACGCA 61.436 55.000 0.00 0.00 32.68 5.24
2124 2934 1.279840 GACACAGGTTCAGCAACGC 59.720 57.895 0.00 0.00 32.68 4.84
2125 2935 0.304705 GTGACACAGGTTCAGCAACG 59.695 55.000 0.00 0.00 32.68 4.10
2126 2936 1.331756 CTGTGACACAGGTTCAGCAAC 59.668 52.381 25.22 0.00 42.35 4.17
2127 2937 1.209261 TCTGTGACACAGGTTCAGCAA 59.791 47.619 30.39 10.06 45.94 3.91
2128 2938 0.829990 TCTGTGACACAGGTTCAGCA 59.170 50.000 30.39 10.75 45.94 4.41
2129 2939 1.506493 CTCTGTGACACAGGTTCAGC 58.494 55.000 30.39 0.00 45.94 4.26
2130 2940 1.688735 TCCTCTGTGACACAGGTTCAG 59.311 52.381 30.39 21.13 45.94 3.02
2131 2941 1.788229 TCCTCTGTGACACAGGTTCA 58.212 50.000 30.39 13.87 45.94 3.18
2132 2942 2.037772 ACATCCTCTGTGACACAGGTTC 59.962 50.000 30.39 0.00 45.94 3.62
2133 2943 2.050144 ACATCCTCTGTGACACAGGTT 58.950 47.619 30.39 12.53 45.94 3.50
2134 2944 1.722034 ACATCCTCTGTGACACAGGT 58.278 50.000 30.39 19.09 45.94 4.00
2143 2953 2.102420 TCAACAACGTCACATCCTCTGT 59.898 45.455 0.00 0.00 39.20 3.41
2144 2954 2.754472 TCAACAACGTCACATCCTCTG 58.246 47.619 0.00 0.00 0.00 3.35
2145 2955 3.069586 TCTTCAACAACGTCACATCCTCT 59.930 43.478 0.00 0.00 0.00 3.69
2146 2956 3.390135 TCTTCAACAACGTCACATCCTC 58.610 45.455 0.00 0.00 0.00 3.71
2147 2957 3.469008 TCTTCAACAACGTCACATCCT 57.531 42.857 0.00 0.00 0.00 3.24
2148 2958 4.749245 AATCTTCAACAACGTCACATCC 57.251 40.909 0.00 0.00 0.00 3.51
2149 2959 5.049405 AGGAAATCTTCAACAACGTCACATC 60.049 40.000 0.00 0.00 0.00 3.06
2150 2960 4.821805 AGGAAATCTTCAACAACGTCACAT 59.178 37.500 0.00 0.00 0.00 3.21
2151 2961 4.196193 AGGAAATCTTCAACAACGTCACA 58.804 39.130 0.00 0.00 0.00 3.58
2152 2962 4.319549 GGAGGAAATCTTCAACAACGTCAC 60.320 45.833 0.00 0.00 0.00 3.67
2153 2963 3.813166 GGAGGAAATCTTCAACAACGTCA 59.187 43.478 0.00 0.00 0.00 4.35
2154 2964 3.120649 CGGAGGAAATCTTCAACAACGTC 60.121 47.826 0.00 0.00 0.00 4.34
2155 2965 2.806244 CGGAGGAAATCTTCAACAACGT 59.194 45.455 0.00 0.00 0.00 3.99
2156 2966 2.412847 GCGGAGGAAATCTTCAACAACG 60.413 50.000 0.00 0.00 0.00 4.10
2157 2967 2.552315 TGCGGAGGAAATCTTCAACAAC 59.448 45.455 0.00 0.00 0.00 3.32
2158 2968 2.813754 CTGCGGAGGAAATCTTCAACAA 59.186 45.455 0.00 0.00 0.00 2.83
2159 2969 2.426522 CTGCGGAGGAAATCTTCAACA 58.573 47.619 0.00 0.00 0.00 3.33
2160 2970 1.740025 CCTGCGGAGGAAATCTTCAAC 59.260 52.381 19.84 0.00 42.93 3.18
2161 2971 1.950484 GCCTGCGGAGGAAATCTTCAA 60.950 52.381 29.09 0.00 42.93 2.69
2162 2972 0.392998 GCCTGCGGAGGAAATCTTCA 60.393 55.000 29.09 0.00 42.93 3.02
2163 2973 0.392998 TGCCTGCGGAGGAAATCTTC 60.393 55.000 29.09 7.39 42.93 2.87
2164 2974 0.038166 TTGCCTGCGGAGGAAATCTT 59.962 50.000 29.09 0.00 42.93 2.40
2165 2975 0.038166 TTTGCCTGCGGAGGAAATCT 59.962 50.000 29.09 0.00 42.93 2.40
2166 2976 0.887933 TTTTGCCTGCGGAGGAAATC 59.112 50.000 29.09 9.42 42.93 2.17
2167 2977 1.337118 TTTTTGCCTGCGGAGGAAAT 58.663 45.000 29.09 0.00 42.93 2.17
2168 2978 1.000731 CATTTTTGCCTGCGGAGGAAA 59.999 47.619 29.09 21.49 42.93 3.13
2169 2979 0.602562 CATTTTTGCCTGCGGAGGAA 59.397 50.000 29.09 15.21 42.93 3.36
2170 2980 0.539438 ACATTTTTGCCTGCGGAGGA 60.539 50.000 29.09 9.19 42.93 3.71
2221 3031 7.591426 CAGTGAATTCAACAAACCTAAAGTAGC 59.409 37.037 10.35 0.00 0.00 3.58
2231 3041 5.232838 CCAGAAAGCAGTGAATTCAACAAAC 59.767 40.000 10.35 0.00 0.00 2.93
2306 3116 2.535574 GCTTTTCTTGAACAAGGTTGCG 59.464 45.455 13.46 2.45 38.88 4.85
2630 3448 1.000607 TCAAGGGCATCGCGTCTATAC 60.001 52.381 5.77 0.00 0.00 1.47
2673 3491 7.425606 GTCTTGCTAGAAAATTTGGAACAGAA 58.574 34.615 0.00 0.00 32.92 3.02
2694 3512 3.490348 CAACCCAGATTTCTGTGGTCTT 58.510 45.455 16.25 4.76 42.61 3.01
2714 3532 2.373169 AGAAGAATGTCAGGGTTCTGCA 59.627 45.455 0.00 0.00 40.69 4.41
2918 3749 5.163754 CGGAAAATCATACAGGAACCAAGAC 60.164 44.000 0.00 0.00 0.00 3.01
2929 3760 4.639755 ACATGCACATCGGAAAATCATACA 59.360 37.500 0.00 0.00 0.00 2.29
3575 4407 8.207545 ACAAAGGATAGGTCTAAAATCAGCTAG 58.792 37.037 0.00 0.00 0.00 3.42
3599 4431 7.455638 AGGTAATCTAACTACCAAGTACCAACA 59.544 37.037 2.10 0.00 41.23 3.33
3817 4649 0.512952 CTTCTGTCGGTCCGCAAAAG 59.487 55.000 6.34 6.87 0.00 2.27
3841 4673 6.819397 AGGGTTAAGAAGTGAAGTAATTGC 57.181 37.500 0.00 0.00 0.00 3.56
3899 4732 8.145767 CCTGCAAATATTTGTGTTCATATCCAT 58.854 33.333 25.15 0.00 40.24 3.41
3906 4739 4.597404 TGCCTGCAAATATTTGTGTTCA 57.403 36.364 25.15 15.27 40.24 3.18
4028 4861 2.507944 CGCCCAAGATGCCTAGCT 59.492 61.111 0.00 0.00 0.00 3.32
4149 4982 6.418057 ACTTGAATTGGGCAGTAAAATCAA 57.582 33.333 0.00 0.00 0.00 2.57
4367 5201 4.508662 CCCTAGGAATCAGTGTGAAAGTC 58.491 47.826 11.48 0.00 0.00 3.01
4444 5278 1.068055 CCTGTTTTCACTCAGCATGGC 60.068 52.381 0.00 0.00 36.16 4.40
4500 5335 4.456280 TGTGTTGCACATAACCAAACAA 57.544 36.364 0.00 0.00 39.62 2.83
4563 6430 4.893608 TCTATAGTGTGCATGTGTGTGTT 58.106 39.130 0.00 0.00 0.00 3.32
4573 6440 8.826710 GTTATGCTTGTTTATCTATAGTGTGCA 58.173 33.333 0.00 0.00 0.00 4.57
4727 6624 1.078143 AGGCACGAGGAGGCATTTC 60.078 57.895 0.00 0.00 0.00 2.17
4796 6697 1.894756 TTGGCGACTCCCAAAACCG 60.895 57.895 0.00 0.00 41.69 4.44
4815 6716 2.789409 GGTACCTCTGCACCTTCAAT 57.211 50.000 4.06 0.00 0.00 2.57
4843 6744 2.606725 CCTTCGTCATTGCTCATCAGAC 59.393 50.000 0.00 0.00 0.00 3.51
4856 6777 3.961414 GGTTGGGCCCCTTCGTCA 61.961 66.667 22.27 0.00 0.00 4.35
4945 6882 0.250124 CAAGCACTTGACCACCCGTA 60.250 55.000 4.31 0.00 42.93 4.02
4947 6884 2.260869 CCAAGCACTTGACCACCCG 61.261 63.158 11.94 0.00 42.93 5.28
4948 6885 1.152756 ACCAAGCACTTGACCACCC 60.153 57.895 11.94 0.00 42.93 4.61
5041 6989 2.756907 ACTACAGCCATCTCCATGAGT 58.243 47.619 0.00 0.00 30.57 3.41
5056 7004 0.323629 CAAGGGGCCGAAGAACTACA 59.676 55.000 0.00 0.00 0.00 2.74
5100 7048 1.073199 CCGACAAGAAGGGCAAGGT 59.927 57.895 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.