Multiple sequence alignment - TraesCS1A01G085200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G085200 chr1A 100.000 2603 0 0 1 2603 71303678 71301076 0.000000e+00 4807.0
1 TraesCS1A01G085200 chr1A 88.398 543 57 6 2062 2603 589613383 589613920 0.000000e+00 649.0
2 TraesCS1A01G085200 chr1D 93.158 760 39 5 725 1476 70893045 70892291 0.000000e+00 1103.0
3 TraesCS1A01G085200 chr1D 91.016 512 31 7 1565 2061 70892249 70891738 0.000000e+00 676.0
4 TraesCS1A01G085200 chr1D 90.411 73 6 1 145 216 70893181 70893109 7.670000e-16 95.3
5 TraesCS1A01G085200 chr1B 94.674 582 30 1 725 1306 112351763 112351183 0.000000e+00 902.0
6 TraesCS1A01G085200 chr1B 84.450 418 40 14 1641 2049 112345196 112344795 3.140000e-104 388.0
7 TraesCS1A01G085200 chr1B 92.941 255 16 2 25 277 112352345 112352091 1.140000e-98 370.0
8 TraesCS1A01G085200 chr1B 91.667 264 21 1 464 726 640820274 640820011 5.290000e-97 364.0
9 TraesCS1A01G085200 chr5B 89.852 542 54 1 2062 2603 693954315 693953775 0.000000e+00 695.0
10 TraesCS1A01G085200 chr5B 89.299 542 57 1 2062 2603 693951799 693951259 0.000000e+00 678.0
11 TraesCS1A01G085200 chr5B 88.930 542 60 0 2062 2603 712875074 712875615 0.000000e+00 669.0
12 TraesCS1A01G085200 chr5B 88.398 543 60 3 2062 2603 693953056 693952516 0.000000e+00 651.0
13 TraesCS1A01G085200 chr6D 90.341 528 51 0 2076 2603 289511266 289510739 0.000000e+00 693.0
14 TraesCS1A01G085200 chr7A 90.038 522 52 0 2062 2583 77593679 77593158 0.000000e+00 676.0
15 TraesCS1A01G085200 chr7A 91.386 267 20 3 465 729 717840037 717839772 1.900000e-96 363.0
16 TraesCS1A01G085200 chr3D 88.561 542 62 0 2062 2603 598603820 598603279 0.000000e+00 658.0
17 TraesCS1A01G085200 chr3A 88.192 542 64 0 2062 2603 26208910 26209451 0.000000e+00 647.0
18 TraesCS1A01G085200 chr3A 92.015 263 20 1 465 726 747093347 747093085 4.090000e-98 368.0
19 TraesCS1A01G085200 chr3A 92.015 263 20 1 465 726 747114223 747113961 4.090000e-98 368.0
20 TraesCS1A01G085200 chr7D 94.340 265 14 1 465 728 358677362 358677626 3.120000e-109 405.0
21 TraesCS1A01G085200 chr7D 97.872 47 1 0 1504 1550 46324687 46324641 5.970000e-12 82.4
22 TraesCS1A01G085200 chr4A 93.985 266 14 2 463 727 567042937 567042673 4.030000e-108 401.0
23 TraesCS1A01G085200 chr4A 94.340 53 2 1 1502 1553 722897803 722897855 2.150000e-11 80.5
24 TraesCS1A01G085200 chr4B 91.667 264 21 1 464 726 59051863 59051600 5.290000e-97 364.0
25 TraesCS1A01G085200 chr4B 94.231 52 3 0 1504 1555 59864362 59864311 2.150000e-11 80.5
26 TraesCS1A01G085200 chr4D 90.775 271 23 2 458 726 216636122 216636392 6.850000e-96 361.0
27 TraesCS1A01G085200 chr4D 97.917 48 1 0 1504 1551 487785933 487785886 1.660000e-12 84.2
28 TraesCS1A01G085200 chr4D 97.872 47 1 0 1504 1550 249457543 249457589 5.970000e-12 82.4
29 TraesCS1A01G085200 chr2A 91.011 267 21 3 463 727 738063553 738063288 8.860000e-95 357.0
30 TraesCS1A01G085200 chr2A 97.917 48 1 0 1504 1551 650240689 650240736 1.660000e-12 84.2
31 TraesCS1A01G085200 chr2D 96.226 53 1 1 1504 1555 37395438 37395386 4.620000e-13 86.1
32 TraesCS1A01G085200 chr7B 92.593 54 4 0 1504 1557 649408687 649408634 7.720000e-11 78.7
33 TraesCS1A01G085200 chr2B 94.118 51 3 0 1501 1551 627142913 627142963 7.720000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G085200 chr1A 71301076 71303678 2602 True 4807.000000 4807 100.000000 1 2603 1 chr1A.!!$R1 2602
1 TraesCS1A01G085200 chr1A 589613383 589613920 537 False 649.000000 649 88.398000 2062 2603 1 chr1A.!!$F1 541
2 TraesCS1A01G085200 chr1D 70891738 70893181 1443 True 624.766667 1103 91.528333 145 2061 3 chr1D.!!$R1 1916
3 TraesCS1A01G085200 chr1B 112351183 112352345 1162 True 636.000000 902 93.807500 25 1306 2 chr1B.!!$R3 1281
4 TraesCS1A01G085200 chr5B 693951259 693954315 3056 True 674.666667 695 89.183000 2062 2603 3 chr5B.!!$R1 541
5 TraesCS1A01G085200 chr5B 712875074 712875615 541 False 669.000000 669 88.930000 2062 2603 1 chr5B.!!$F1 541
6 TraesCS1A01G085200 chr6D 289510739 289511266 527 True 693.000000 693 90.341000 2076 2603 1 chr6D.!!$R1 527
7 TraesCS1A01G085200 chr7A 77593158 77593679 521 True 676.000000 676 90.038000 2062 2583 1 chr7A.!!$R1 521
8 TraesCS1A01G085200 chr3D 598603279 598603820 541 True 658.000000 658 88.561000 2062 2603 1 chr3D.!!$R1 541
9 TraesCS1A01G085200 chr3A 26208910 26209451 541 False 647.000000 647 88.192000 2062 2603 1 chr3A.!!$F1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
482 627 0.033796 ATACTCCCTCCGTCCGTGAA 60.034 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 1958 0.10104 TCGATCGTTTATTCCGGCGT 59.899 50.0 15.94 0.0 0.0 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.597510 GCACCGGCCTGTTTTCCT 60.598 61.111 0.00 0.00 0.00 3.36
21 22 2.919494 GCACCGGCCTGTTTTCCTG 61.919 63.158 0.00 0.00 0.00 3.86
22 23 2.597510 ACCGGCCTGTTTTCCTGC 60.598 61.111 0.00 0.00 0.00 4.85
23 24 2.282462 CCGGCCTGTTTTCCTGCT 60.282 61.111 0.00 0.00 0.00 4.24
28 29 1.467920 GCCTGTTTTCCTGCTAGCAT 58.532 50.000 19.72 0.00 0.00 3.79
57 58 4.672413 CACTTTTAGACTTTTGAAGCGCAG 59.328 41.667 11.47 0.00 0.00 5.18
81 82 1.546923 CCTGCATTCCTGTCAATTGCA 59.453 47.619 0.00 1.49 0.00 4.08
89 90 5.988310 TTCCTGTCAATTGCAGATTGATT 57.012 34.783 23.16 1.96 39.80 2.57
102 103 2.178580 GATTGATTTTGCCTGTCCCCA 58.821 47.619 0.00 0.00 0.00 4.96
114 115 2.039418 CTGTCCCCATTATCCTCACGA 58.961 52.381 0.00 0.00 0.00 4.35
115 116 2.634940 CTGTCCCCATTATCCTCACGAT 59.365 50.000 0.00 0.00 34.73 3.73
123 124 3.667497 TTATCCTCACGATGCTGATCC 57.333 47.619 0.00 0.00 31.92 3.36
187 189 0.179158 AACGTGCCGACCACAAAAAC 60.179 50.000 0.00 0.00 44.91 2.43
236 240 2.094026 ACTTGCGCTGATGATACTGTGA 60.094 45.455 9.73 0.00 0.00 3.58
247 251 3.165071 TGATACTGTGAGCAGAACTCCA 58.835 45.455 1.30 0.00 45.61 3.86
252 256 3.243907 ACTGTGAGCAGAACTCCACTAAC 60.244 47.826 1.30 0.00 45.61 2.34
258 262 3.901844 AGCAGAACTCCACTAACAACCTA 59.098 43.478 0.00 0.00 0.00 3.08
260 264 5.720041 AGCAGAACTCCACTAACAACCTATA 59.280 40.000 0.00 0.00 0.00 1.31
282 286 9.898152 CTATAATTAGGAAAGGAAGATGGGATC 57.102 37.037 0.00 0.00 0.00 3.36
283 287 6.596869 AATTAGGAAAGGAAGATGGGATCA 57.403 37.500 0.00 0.00 0.00 2.92
284 288 5.636903 TTAGGAAAGGAAGATGGGATCAG 57.363 43.478 0.00 0.00 0.00 2.90
285 289 2.174424 AGGAAAGGAAGATGGGATCAGC 59.826 50.000 0.00 0.00 0.00 4.26
286 290 2.580962 GAAAGGAAGATGGGATCAGCC 58.419 52.381 0.00 0.00 0.00 4.85
298 442 3.409026 GGATCAGCCCTACGATGATTT 57.591 47.619 0.00 0.00 33.90 2.17
305 449 5.242838 TCAGCCCTACGATGATTTTGTTTTT 59.757 36.000 0.00 0.00 0.00 1.94
307 451 4.091365 GCCCTACGATGATTTTGTTTTTGC 59.909 41.667 0.00 0.00 0.00 3.68
311 455 6.640499 CCTACGATGATTTTGTTTTTGCAGAA 59.360 34.615 0.00 0.00 0.00 3.02
316 460 6.907206 TGATTTTGTTTTTGCAGAAGAAGG 57.093 33.333 0.00 0.00 0.00 3.46
318 462 4.470334 TTTGTTTTTGCAGAAGAAGGCT 57.530 36.364 0.00 0.00 0.00 4.58
325 469 2.552802 CAGAAGAAGGCTGCTGTGG 58.447 57.895 0.00 0.00 42.06 4.17
327 471 0.475906 AGAAGAAGGCTGCTGTGGTT 59.524 50.000 0.00 0.00 0.00 3.67
344 488 4.814234 TGTGGTTAACTGCTTAGTCACTTG 59.186 41.667 5.42 0.00 0.00 3.16
347 491 6.480981 GTGGTTAACTGCTTAGTCACTTGTTA 59.519 38.462 5.42 0.00 0.00 2.41
350 494 7.011669 GGTTAACTGCTTAGTCACTTGTTAACA 59.988 37.037 20.03 3.59 44.39 2.41
356 500 7.094631 TGCTTAGTCACTTGTTAACATCGTAT 58.905 34.615 9.56 3.08 0.00 3.06
443 587 1.405105 GAGTGCTGCACTTTTTGGTGA 59.595 47.619 33.33 0.00 45.44 4.02
468 613 2.024176 ACCGTTGGTGATGCATACTC 57.976 50.000 0.00 0.00 32.98 2.59
469 614 1.299541 CCGTTGGTGATGCATACTCC 58.700 55.000 0.00 3.15 0.00 3.85
470 615 1.299541 CGTTGGTGATGCATACTCCC 58.700 55.000 0.00 0.00 0.00 4.30
471 616 1.134401 CGTTGGTGATGCATACTCCCT 60.134 52.381 0.00 0.00 0.00 4.20
472 617 2.565841 GTTGGTGATGCATACTCCCTC 58.434 52.381 0.00 0.00 0.00 4.30
473 618 1.131638 TGGTGATGCATACTCCCTCC 58.868 55.000 0.00 0.00 0.00 4.30
474 619 0.034059 GGTGATGCATACTCCCTCCG 59.966 60.000 0.00 0.00 0.00 4.63
475 620 0.753262 GTGATGCATACTCCCTCCGT 59.247 55.000 0.00 0.00 0.00 4.69
476 621 1.040646 TGATGCATACTCCCTCCGTC 58.959 55.000 0.00 0.00 0.00 4.79
477 622 0.318762 GATGCATACTCCCTCCGTCC 59.681 60.000 0.00 0.00 0.00 4.79
478 623 1.464376 ATGCATACTCCCTCCGTCCG 61.464 60.000 0.00 0.00 0.00 4.79
479 624 2.125961 GCATACTCCCTCCGTCCGT 61.126 63.158 0.00 0.00 0.00 4.69
480 625 1.734137 CATACTCCCTCCGTCCGTG 59.266 63.158 0.00 0.00 0.00 4.94
481 626 0.750546 CATACTCCCTCCGTCCGTGA 60.751 60.000 0.00 0.00 0.00 4.35
482 627 0.033796 ATACTCCCTCCGTCCGTGAA 60.034 55.000 0.00 0.00 0.00 3.18
483 628 0.033796 TACTCCCTCCGTCCGTGAAT 60.034 55.000 0.00 0.00 0.00 2.57
484 629 0.033796 ACTCCCTCCGTCCGTGAATA 60.034 55.000 0.00 0.00 0.00 1.75
485 630 1.108776 CTCCCTCCGTCCGTGAATAA 58.891 55.000 0.00 0.00 0.00 1.40
486 631 1.067212 CTCCCTCCGTCCGTGAATAAG 59.933 57.143 0.00 0.00 0.00 1.73
487 632 0.822164 CCCTCCGTCCGTGAATAAGT 59.178 55.000 0.00 0.00 0.00 2.24
488 633 1.470979 CCCTCCGTCCGTGAATAAGTG 60.471 57.143 0.00 0.00 0.00 3.16
489 634 1.203994 CCTCCGTCCGTGAATAAGTGT 59.796 52.381 0.00 0.00 0.00 3.55
490 635 2.424601 CCTCCGTCCGTGAATAAGTGTA 59.575 50.000 0.00 0.00 0.00 2.90
491 636 3.432782 CTCCGTCCGTGAATAAGTGTAC 58.567 50.000 0.00 0.00 0.00 2.90
492 637 2.819019 TCCGTCCGTGAATAAGTGTACA 59.181 45.455 0.00 0.00 0.00 2.90
493 638 3.444742 TCCGTCCGTGAATAAGTGTACAT 59.555 43.478 0.00 0.00 0.00 2.29
494 639 3.795101 CCGTCCGTGAATAAGTGTACATC 59.205 47.826 0.00 0.00 0.00 3.06
495 640 4.439700 CCGTCCGTGAATAAGTGTACATCT 60.440 45.833 0.00 0.00 0.00 2.90
496 641 5.220912 CCGTCCGTGAATAAGTGTACATCTA 60.221 44.000 0.00 0.00 0.00 1.98
497 642 5.907945 CGTCCGTGAATAAGTGTACATCTAG 59.092 44.000 0.00 0.00 0.00 2.43
498 643 5.686397 GTCCGTGAATAAGTGTACATCTAGC 59.314 44.000 0.00 0.00 0.00 3.42
499 644 5.593095 TCCGTGAATAAGTGTACATCTAGCT 59.407 40.000 0.00 0.00 0.00 3.32
500 645 6.096423 TCCGTGAATAAGTGTACATCTAGCTT 59.904 38.462 0.00 0.00 0.00 3.74
501 646 6.757010 CCGTGAATAAGTGTACATCTAGCTTT 59.243 38.462 0.00 0.00 0.00 3.51
502 647 7.277981 CCGTGAATAAGTGTACATCTAGCTTTT 59.722 37.037 0.00 0.00 0.00 2.27
503 648 8.110612 CGTGAATAAGTGTACATCTAGCTTTTG 58.889 37.037 0.00 0.00 0.00 2.44
504 649 8.936864 GTGAATAAGTGTACATCTAGCTTTTGT 58.063 33.333 0.00 0.00 0.00 2.83
507 652 8.943909 ATAAGTGTACATCTAGCTTTTGTACC 57.056 34.615 21.21 15.58 43.13 3.34
508 653 6.354794 AGTGTACATCTAGCTTTTGTACCA 57.645 37.500 21.21 12.29 43.13 3.25
509 654 6.765403 AGTGTACATCTAGCTTTTGTACCAA 58.235 36.000 21.21 8.94 43.13 3.67
510 655 6.874134 AGTGTACATCTAGCTTTTGTACCAAG 59.126 38.462 21.21 0.00 43.13 3.61
511 656 6.649557 GTGTACATCTAGCTTTTGTACCAAGT 59.350 38.462 21.21 1.75 43.13 3.16
512 657 7.172703 GTGTACATCTAGCTTTTGTACCAAGTT 59.827 37.037 21.21 1.40 43.13 2.66
513 658 8.369424 TGTACATCTAGCTTTTGTACCAAGTTA 58.631 33.333 21.21 7.48 43.13 2.24
514 659 9.211485 GTACATCTAGCTTTTGTACCAAGTTAA 57.789 33.333 16.66 0.00 39.71 2.01
515 660 8.685838 ACATCTAGCTTTTGTACCAAGTTAAA 57.314 30.769 0.00 0.00 0.00 1.52
516 661 9.127277 ACATCTAGCTTTTGTACCAAGTTAAAA 57.873 29.630 0.00 0.00 0.00 1.52
606 751 9.820229 TTATCAAAGTACATTTCACAACGAATC 57.180 29.630 0.00 0.00 32.32 2.52
607 752 7.490962 TCAAAGTACATTTCACAACGAATCT 57.509 32.000 0.00 0.00 32.32 2.40
608 753 8.596271 TCAAAGTACATTTCACAACGAATCTA 57.404 30.769 0.00 0.00 32.32 1.98
609 754 8.708742 TCAAAGTACATTTCACAACGAATCTAG 58.291 33.333 0.00 0.00 32.32 2.43
610 755 8.495949 CAAAGTACATTTCACAACGAATCTAGT 58.504 33.333 0.00 0.00 32.32 2.57
611 756 7.582435 AGTACATTTCACAACGAATCTAGTG 57.418 36.000 0.00 0.00 32.32 2.74
612 757 7.375834 AGTACATTTCACAACGAATCTAGTGA 58.624 34.615 0.00 0.00 39.06 3.41
613 758 8.035394 AGTACATTTCACAACGAATCTAGTGAT 58.965 33.333 0.00 0.00 40.32 3.06
614 759 9.297586 GTACATTTCACAACGAATCTAGTGATA 57.702 33.333 0.00 0.00 40.32 2.15
615 760 8.186178 ACATTTCACAACGAATCTAGTGATAC 57.814 34.615 0.00 0.00 40.32 2.24
616 761 8.035394 ACATTTCACAACGAATCTAGTGATACT 58.965 33.333 0.00 0.00 40.32 2.12
617 762 9.516314 CATTTCACAACGAATCTAGTGATACTA 57.484 33.333 0.00 0.00 40.32 1.82
648 793 7.807907 AGTGTCATAAATGCTTTTACTTTTCCG 59.192 33.333 6.92 0.00 30.33 4.30
649 794 7.593644 GTGTCATAAATGCTTTTACTTTTCCGT 59.406 33.333 6.92 0.00 30.33 4.69
650 795 8.784994 TGTCATAAATGCTTTTACTTTTCCGTA 58.215 29.630 6.92 0.00 30.33 4.02
651 796 9.274065 GTCATAAATGCTTTTACTTTTCCGTAG 57.726 33.333 6.92 0.00 30.33 3.51
652 797 9.221933 TCATAAATGCTTTTACTTTTCCGTAGA 57.778 29.630 6.92 0.00 30.33 2.59
653 798 9.834628 CATAAATGCTTTTACTTTTCCGTAGAA 57.165 29.630 6.92 0.00 30.33 2.10
655 800 8.797266 AAATGCTTTTACTTTTCCGTAGAAAG 57.203 30.769 0.00 0.00 42.78 2.62
656 801 6.930667 TGCTTTTACTTTTCCGTAGAAAGT 57.069 33.333 11.22 11.22 42.78 2.66
657 802 7.324354 TGCTTTTACTTTTCCGTAGAAAGTT 57.676 32.000 11.58 0.00 42.78 2.66
658 803 7.190871 TGCTTTTACTTTTCCGTAGAAAGTTG 58.809 34.615 11.58 4.50 42.78 3.16
659 804 6.635641 GCTTTTACTTTTCCGTAGAAAGTTGG 59.364 38.462 11.58 4.26 42.78 3.77
660 805 7.628769 TTTTACTTTTCCGTAGAAAGTTGGT 57.371 32.000 11.58 3.11 42.78 3.67
661 806 6.849588 TTACTTTTCCGTAGAAAGTTGGTC 57.150 37.500 11.58 0.00 42.78 4.02
662 807 4.773013 ACTTTTCCGTAGAAAGTTGGTCA 58.227 39.130 3.17 0.00 42.78 4.02
663 808 5.187687 ACTTTTCCGTAGAAAGTTGGTCAA 58.812 37.500 3.17 0.00 42.78 3.18
664 809 5.648960 ACTTTTCCGTAGAAAGTTGGTCAAA 59.351 36.000 3.17 0.00 42.78 2.69
665 810 6.151480 ACTTTTCCGTAGAAAGTTGGTCAAAA 59.849 34.615 3.17 0.00 42.78 2.44
666 811 6.702716 TTTCCGTAGAAAGTTGGTCAAAAT 57.297 33.333 0.00 0.00 37.07 1.82
667 812 6.702716 TTCCGTAGAAAGTTGGTCAAAATT 57.297 33.333 0.00 0.00 0.00 1.82
668 813 6.702716 TCCGTAGAAAGTTGGTCAAAATTT 57.297 33.333 0.00 0.00 38.69 1.82
669 814 7.102847 TCCGTAGAAAGTTGGTCAAAATTTT 57.897 32.000 0.00 0.00 36.25 1.82
670 815 8.223177 TCCGTAGAAAGTTGGTCAAAATTTTA 57.777 30.769 2.44 0.00 36.25 1.52
671 816 8.684520 TCCGTAGAAAGTTGGTCAAAATTTTAA 58.315 29.630 2.44 0.00 36.25 1.52
672 817 9.303537 CCGTAGAAAGTTGGTCAAAATTTTAAA 57.696 29.630 2.44 0.00 36.25 1.52
676 821 9.448438 AGAAAGTTGGTCAAAATTTTAAAGCTT 57.552 25.926 2.44 0.00 36.25 3.74
678 823 9.838975 AAAGTTGGTCAAAATTTTAAAGCTTTG 57.161 25.926 22.02 13.80 32.32 2.77
679 824 8.785329 AGTTGGTCAAAATTTTAAAGCTTTGA 57.215 26.923 22.02 11.08 35.88 2.69
686 831 9.097257 TCAAAATTTTAAAGCTTTGACTTCAGG 57.903 29.630 22.02 6.18 33.90 3.86
687 832 7.482654 AAATTTTAAAGCTTTGACTTCAGGC 57.517 32.000 22.02 0.00 0.00 4.85
688 833 5.590530 TTTTAAAGCTTTGACTTCAGGCA 57.409 34.783 22.02 0.00 0.00 4.75
689 834 5.590530 TTTAAAGCTTTGACTTCAGGCAA 57.409 34.783 22.02 0.76 0.00 4.52
690 835 5.590530 TTAAAGCTTTGACTTCAGGCAAA 57.409 34.783 22.02 7.61 33.41 3.68
691 836 4.470334 AAAGCTTTGACTTCAGGCAAAA 57.530 36.364 11.80 0.00 34.01 2.44
692 837 3.722728 AGCTTTGACTTCAGGCAAAAG 57.277 42.857 9.15 5.11 34.01 2.27
693 838 2.130395 GCTTTGACTTCAGGCAAAAGC 58.870 47.619 9.15 10.48 34.01 3.51
694 839 2.223900 GCTTTGACTTCAGGCAAAAGCT 60.224 45.455 9.15 0.00 34.01 3.74
695 840 3.004734 GCTTTGACTTCAGGCAAAAGCTA 59.995 43.478 9.15 0.00 34.01 3.32
696 841 4.791974 CTTTGACTTCAGGCAAAAGCTAG 58.208 43.478 9.15 0.00 34.01 3.42
697 842 3.769739 TGACTTCAGGCAAAAGCTAGA 57.230 42.857 0.00 0.00 0.00 2.43
698 843 4.292186 TGACTTCAGGCAAAAGCTAGAT 57.708 40.909 0.00 0.00 0.00 1.98
699 844 4.005650 TGACTTCAGGCAAAAGCTAGATG 58.994 43.478 0.00 0.00 0.00 2.90
700 845 4.006319 GACTTCAGGCAAAAGCTAGATGT 58.994 43.478 0.00 0.00 0.00 3.06
701 846 5.165961 ACTTCAGGCAAAAGCTAGATGTA 57.834 39.130 0.00 0.00 0.00 2.29
702 847 4.938226 ACTTCAGGCAAAAGCTAGATGTAC 59.062 41.667 0.00 0.00 0.00 2.90
703 848 4.551702 TCAGGCAAAAGCTAGATGTACA 57.448 40.909 0.00 0.00 0.00 2.90
704 849 4.253685 TCAGGCAAAAGCTAGATGTACAC 58.746 43.478 0.00 0.00 0.00 2.90
705 850 4.020218 TCAGGCAAAAGCTAGATGTACACT 60.020 41.667 0.00 0.13 0.00 3.55
706 851 4.697352 CAGGCAAAAGCTAGATGTACACTT 59.303 41.667 0.00 0.00 0.00 3.16
707 852 5.874810 CAGGCAAAAGCTAGATGTACACTTA 59.125 40.000 0.00 0.00 0.00 2.24
708 853 6.540189 CAGGCAAAAGCTAGATGTACACTTAT 59.460 38.462 0.00 0.00 0.00 1.73
709 854 7.066284 CAGGCAAAAGCTAGATGTACACTTATT 59.934 37.037 0.00 0.00 0.00 1.40
710 855 7.281100 AGGCAAAAGCTAGATGTACACTTATTC 59.719 37.037 0.00 0.00 0.00 1.75
711 856 7.065803 GGCAAAAGCTAGATGTACACTTATTCA 59.934 37.037 0.00 0.00 0.00 2.57
712 857 7.905493 GCAAAAGCTAGATGTACACTTATTCAC 59.095 37.037 0.00 0.00 0.00 3.18
713 858 7.757097 AAAGCTAGATGTACACTTATTCACG 57.243 36.000 0.00 0.00 0.00 4.35
714 859 5.833082 AGCTAGATGTACACTTATTCACGG 58.167 41.667 0.00 0.00 0.00 4.94
715 860 5.593095 AGCTAGATGTACACTTATTCACGGA 59.407 40.000 0.00 0.00 0.00 4.69
716 861 5.686397 GCTAGATGTACACTTATTCACGGAC 59.314 44.000 0.00 0.00 0.00 4.79
717 862 4.669318 AGATGTACACTTATTCACGGACG 58.331 43.478 0.00 0.00 0.00 4.79
718 863 3.220507 TGTACACTTATTCACGGACGG 57.779 47.619 0.00 0.00 0.00 4.79
719 864 2.819019 TGTACACTTATTCACGGACGGA 59.181 45.455 0.00 0.00 0.00 4.69
720 865 2.649331 ACACTTATTCACGGACGGAG 57.351 50.000 0.00 0.00 0.00 4.63
721 866 1.203994 ACACTTATTCACGGACGGAGG 59.796 52.381 0.00 0.00 0.00 4.30
722 867 1.475280 CACTTATTCACGGACGGAGGA 59.525 52.381 0.00 0.00 0.00 3.71
723 868 1.749634 ACTTATTCACGGACGGAGGAG 59.250 52.381 0.00 0.00 0.00 3.69
724 869 1.749634 CTTATTCACGGACGGAGGAGT 59.250 52.381 0.00 0.00 0.00 3.85
725 870 2.715749 TATTCACGGACGGAGGAGTA 57.284 50.000 0.00 0.00 0.00 2.59
792 937 3.563479 GGGTTCCCTTACACATCCACAAT 60.563 47.826 0.00 0.00 0.00 2.71
803 948 4.588528 ACACATCCACAATTTTGCCTTACT 59.411 37.500 0.00 0.00 0.00 2.24
958 1103 2.512057 GCAGAGAGAGCAGCAGCC 60.512 66.667 0.00 0.00 43.56 4.85
1042 1187 3.493002 CCCACGCCATGAAATGCAATATT 60.493 43.478 0.00 0.00 44.97 1.28
1061 1206 1.987807 TAAGGCAGCTGCTCCATCCC 61.988 60.000 35.82 18.70 41.70 3.85
1204 1349 3.887335 TACGTGAACCCAAGGGCGC 62.887 63.158 4.70 0.00 39.32 6.53
1318 1463 4.221041 AGGAAGCCTAGACTGTCAACTTAC 59.779 45.833 10.88 8.13 28.47 2.34
1369 1521 9.573166 TTTATGTTTGCTATATGCTAATGACCT 57.427 29.630 0.00 0.00 43.37 3.85
1399 1551 2.018542 GCATGAGGCCAACGTAGTAA 57.981 50.000 5.01 0.00 36.34 2.24
1400 1552 1.664151 GCATGAGGCCAACGTAGTAAC 59.336 52.381 5.01 0.00 36.34 2.50
1405 1557 3.192001 TGAGGCCAACGTAGTAACAGTAG 59.808 47.826 5.01 0.00 45.00 2.57
1427 1579 2.330216 ACTATAGATCACCCAGGTGCC 58.670 52.381 12.16 6.46 45.04 5.01
1453 1605 9.798994 CTACGGAGGACATATATAAATAACACC 57.201 37.037 0.00 0.00 0.00 4.16
1472 1625 6.315091 ACACCAGTTACTGCTATCTATACG 57.685 41.667 6.88 0.00 0.00 3.06
1473 1626 6.060136 ACACCAGTTACTGCTATCTATACGA 58.940 40.000 6.88 0.00 0.00 3.43
1487 1640 9.338291 GCTATCTATACGAATACGAATTGAACA 57.662 33.333 0.00 0.00 42.66 3.18
1495 1648 6.540914 ACGAATACGAATTGAACAATGGGTAT 59.459 34.615 13.16 13.16 42.66 2.73
1496 1649 6.850823 CGAATACGAATTGAACAATGGGTATG 59.149 38.462 16.69 8.13 42.66 2.39
1498 1651 5.309323 ACGAATTGAACAATGGGTATGTG 57.691 39.130 0.69 0.00 0.00 3.21
1499 1652 5.007034 ACGAATTGAACAATGGGTATGTGA 58.993 37.500 0.69 0.00 0.00 3.58
1511 1664 4.626042 TGGGTATGTGAAAATGTTTGCAC 58.374 39.130 9.24 9.24 45.15 4.57
1520 1673 6.966413 GTGAAAATGTTTGCACGTGTATATG 58.034 36.000 18.38 0.00 37.01 1.78
1521 1674 6.799441 GTGAAAATGTTTGCACGTGTATATGA 59.201 34.615 18.38 0.00 37.01 2.15
1522 1675 7.007367 GTGAAAATGTTTGCACGTGTATATGAG 59.993 37.037 18.38 0.00 37.01 2.90
1523 1676 4.536364 ATGTTTGCACGTGTATATGAGC 57.464 40.909 18.38 0.00 0.00 4.26
1524 1677 2.347150 TGTTTGCACGTGTATATGAGCG 59.653 45.455 18.38 0.00 32.85 5.03
1525 1678 0.927537 TTGCACGTGTATATGAGCGC 59.072 50.000 18.38 0.00 32.85 5.92
1526 1679 0.102300 TGCACGTGTATATGAGCGCT 59.898 50.000 11.27 11.27 32.85 5.92
1527 1680 1.209128 GCACGTGTATATGAGCGCTT 58.791 50.000 13.26 0.00 0.00 4.68
1528 1681 1.071239 GCACGTGTATATGAGCGCTTG 60.071 52.381 13.26 2.09 0.00 4.01
1529 1682 1.071239 CACGTGTATATGAGCGCTTGC 60.071 52.381 13.26 0.00 39.58 4.01
1530 1683 0.159554 CGTGTATATGAGCGCTTGCG 59.840 55.000 13.26 10.90 45.69 4.85
1531 1684 1.209128 GTGTATATGAGCGCTTGCGT 58.791 50.000 13.26 3.24 45.69 5.24
1532 1685 1.190323 GTGTATATGAGCGCTTGCGTC 59.810 52.381 13.26 12.36 45.69 5.19
1533 1686 1.067060 TGTATATGAGCGCTTGCGTCT 59.933 47.619 13.26 13.17 45.69 4.18
1534 1687 2.292292 TGTATATGAGCGCTTGCGTCTA 59.708 45.455 13.26 0.00 45.69 2.59
1535 1688 2.732412 ATATGAGCGCTTGCGTCTAT 57.268 45.000 13.26 10.15 45.69 1.98
1536 1689 3.850122 ATATGAGCGCTTGCGTCTATA 57.150 42.857 13.26 11.75 45.69 1.31
1537 1690 1.772182 ATGAGCGCTTGCGTCTATAC 58.228 50.000 13.26 0.00 45.69 1.47
1538 1691 0.738975 TGAGCGCTTGCGTCTATACT 59.261 50.000 13.26 3.73 45.69 2.12
1539 1692 1.124462 GAGCGCTTGCGTCTATACTG 58.876 55.000 13.26 0.00 45.69 2.74
1540 1693 0.456221 AGCGCTTGCGTCTATACTGT 59.544 50.000 16.38 0.00 45.69 3.55
1541 1694 0.572590 GCGCTTGCGTCTATACTGTG 59.427 55.000 16.38 0.00 0.00 3.66
1542 1695 1.909376 CGCTTGCGTCTATACTGTGT 58.091 50.000 6.86 0.00 0.00 3.72
1543 1696 2.259618 CGCTTGCGTCTATACTGTGTT 58.740 47.619 6.86 0.00 0.00 3.32
1544 1697 3.431856 CGCTTGCGTCTATACTGTGTTA 58.568 45.455 6.86 0.00 0.00 2.41
1545 1698 3.855379 CGCTTGCGTCTATACTGTGTTAA 59.145 43.478 6.86 0.00 0.00 2.01
1546 1699 4.325204 CGCTTGCGTCTATACTGTGTTAAA 59.675 41.667 6.86 0.00 0.00 1.52
1547 1700 5.164031 CGCTTGCGTCTATACTGTGTTAAAA 60.164 40.000 6.86 0.00 0.00 1.52
1548 1701 6.595794 GCTTGCGTCTATACTGTGTTAAAAA 58.404 36.000 0.00 0.00 0.00 1.94
1586 1739 9.686683 GTTATGGTTATAGATTATTGGGCAGAT 57.313 33.333 0.00 0.00 0.00 2.90
1619 1772 8.671028 ACTGTAAATAATAAAACACGATGGACC 58.329 33.333 0.00 0.00 0.00 4.46
1667 1824 2.093764 AGATTGCCTCTGACTTCTTCCG 60.094 50.000 0.00 0.00 31.12 4.30
1686 1843 7.669427 TCTTCCGTGTTAGTTGTTTTATAGGA 58.331 34.615 0.00 0.00 0.00 2.94
1689 1846 8.851541 TCCGTGTTAGTTGTTTTATAGGAAAT 57.148 30.769 0.00 0.00 0.00 2.17
1742 1899 1.371337 GCCAAATTCCGGTACCGACC 61.371 60.000 35.41 9.83 42.83 4.79
1762 1920 3.069872 ACCATCTTGCTTTCATTGTGCAA 59.930 39.130 0.00 11.52 43.25 4.08
1777 1935 2.358582 TGTGCAAGTCTGTTGTGATTGG 59.641 45.455 0.00 0.00 0.00 3.16
1784 1942 0.888736 CTGTTGTGATTGGGACCGCA 60.889 55.000 0.00 0.00 0.00 5.69
1788 1946 0.037447 TGTGATTGGGACCGCAATGA 59.963 50.000 15.51 6.01 0.00 2.57
1798 1956 2.033801 GGACCGCAATGATCCATTCTTG 59.966 50.000 0.00 0.00 31.05 3.02
1799 1957 2.684881 GACCGCAATGATCCATTCTTGT 59.315 45.455 0.00 0.00 31.05 3.16
1800 1958 3.876914 GACCGCAATGATCCATTCTTGTA 59.123 43.478 0.00 0.00 31.05 2.41
1801 1959 3.627577 ACCGCAATGATCCATTCTTGTAC 59.372 43.478 0.00 0.00 31.05 2.90
1802 1960 3.303329 CCGCAATGATCCATTCTTGTACG 60.303 47.826 0.00 0.00 31.05 3.67
1803 1961 3.621794 GCAATGATCCATTCTTGTACGC 58.378 45.455 0.00 0.00 31.05 4.42
1804 1962 3.548818 GCAATGATCCATTCTTGTACGCC 60.549 47.826 0.00 0.00 31.05 5.68
1806 1964 1.217882 GATCCATTCTTGTACGCCGG 58.782 55.000 0.00 0.00 0.00 6.13
1807 1965 0.828022 ATCCATTCTTGTACGCCGGA 59.172 50.000 5.05 0.00 0.00 5.14
1808 1966 0.609151 TCCATTCTTGTACGCCGGAA 59.391 50.000 5.05 0.00 0.00 4.30
1809 1967 1.208535 TCCATTCTTGTACGCCGGAAT 59.791 47.619 5.05 0.00 0.00 3.01
1810 1968 2.431419 TCCATTCTTGTACGCCGGAATA 59.569 45.455 5.05 0.00 0.00 1.75
1811 1969 3.118702 TCCATTCTTGTACGCCGGAATAA 60.119 43.478 5.05 0.00 0.00 1.40
1898 2065 2.138320 CATGCACCCATCTATGTCGTC 58.862 52.381 0.00 0.00 0.00 4.20
1909 2076 6.269315 CCATCTATGTCGTCCATTATCTAGC 58.731 44.000 0.00 0.00 34.86 3.42
1926 2093 3.518998 CGATCGACGCTCCACCCT 61.519 66.667 10.26 0.00 34.51 4.34
2014 2181 4.278170 TGCTTTCACACTAATTTCCACCTG 59.722 41.667 0.00 0.00 0.00 4.00
2035 2202 2.389059 CGAATGTCCTGCAGTATCGAG 58.611 52.381 13.81 0.00 35.21 4.04
2045 2212 2.560981 TGCAGTATCGAGTCAAGGTTCA 59.439 45.455 0.00 0.00 0.00 3.18
2056 2223 5.049474 CGAGTCAAGGTTCATGATGACAAAA 60.049 40.000 22.75 0.00 43.53 2.44
2102 2269 1.614903 CTTGGCCTTTGCATCTGAACA 59.385 47.619 3.32 0.00 40.13 3.18
2152 2319 4.696877 TCACAAAGAGCATACAAGGTGATG 59.303 41.667 0.00 0.00 0.00 3.07
2166 2333 4.712051 AGGTGATGCATCAATAAGCCTA 57.288 40.909 30.24 1.95 38.75 3.93
2169 2336 5.893255 AGGTGATGCATCAATAAGCCTAAAA 59.107 36.000 30.24 0.37 38.75 1.52
2177 2344 8.644216 TGCATCAATAAGCCTAAAATCATCATT 58.356 29.630 0.00 0.00 0.00 2.57
2206 2373 5.653255 ATGTTGTTGCTATTCCTATCCCT 57.347 39.130 0.00 0.00 0.00 4.20
2232 2399 2.047655 GGTGTGCCGAATGTCCGA 60.048 61.111 0.00 0.00 0.00 4.55
2235 2402 2.434185 GTGCCGAATGTCCGAGCA 60.434 61.111 0.00 0.00 34.90 4.26
2241 2408 3.262420 GCCGAATGTCCGAGCATAATAT 58.738 45.455 0.00 0.00 0.00 1.28
2248 2415 7.360353 CGAATGTCCGAGCATAATATCAAACAT 60.360 37.037 0.00 0.00 0.00 2.71
2264 2431 9.882996 ATATCAAACATACATCACATTAAAGCG 57.117 29.630 0.00 0.00 0.00 4.68
2301 2468 2.025321 GGTGTCCCATCCAAACCACTAT 60.025 50.000 0.00 0.00 0.00 2.12
2467 2634 1.006102 ACGCCAGACAACTTCCTCG 60.006 57.895 0.00 0.00 0.00 4.63
2471 2638 0.679505 CCAGACAACTTCCTCGTCCA 59.320 55.000 0.00 0.00 0.00 4.02
2516 5199 4.057428 GCCGAGTCTCCACTGCGT 62.057 66.667 0.00 0.00 30.63 5.24
2517 5200 2.651361 CCGAGTCTCCACTGCGTT 59.349 61.111 0.00 0.00 30.63 4.84
2587 5270 0.530650 CCTACATGCCATCTCGCGTT 60.531 55.000 5.77 0.00 0.00 4.84
2592 5275 0.391661 ATGCCATCTCGCGTTGACTT 60.392 50.000 5.77 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.597510 AGGAAAACAGGCCGGTGC 60.598 61.111 10.05 2.11 0.00 5.01
4 5 2.919494 GCAGGAAAACAGGCCGGTG 61.919 63.158 10.05 0.00 0.00 4.94
5 6 1.774894 TAGCAGGAAAACAGGCCGGT 61.775 55.000 1.28 1.28 0.00 5.28
6 7 1.002624 TAGCAGGAAAACAGGCCGG 60.003 57.895 0.00 0.00 0.00 6.13
7 8 1.648467 GCTAGCAGGAAAACAGGCCG 61.648 60.000 10.63 0.00 0.00 6.13
8 9 0.609131 TGCTAGCAGGAAAACAGGCC 60.609 55.000 14.93 0.00 0.00 5.19
9 10 1.467920 ATGCTAGCAGGAAAACAGGC 58.532 50.000 23.89 0.00 0.00 4.85
10 11 4.525912 AAAATGCTAGCAGGAAAACAGG 57.474 40.909 23.89 0.00 0.00 4.00
11 12 5.048083 TGGTAAAATGCTAGCAGGAAAACAG 60.048 40.000 23.89 0.00 0.00 3.16
12 13 4.830046 TGGTAAAATGCTAGCAGGAAAACA 59.170 37.500 23.89 14.21 0.00 2.83
13 14 5.048013 AGTGGTAAAATGCTAGCAGGAAAAC 60.048 40.000 23.89 15.75 30.25 2.43
14 15 5.076873 AGTGGTAAAATGCTAGCAGGAAAA 58.923 37.500 23.89 4.55 30.25 2.29
15 16 4.662278 AGTGGTAAAATGCTAGCAGGAAA 58.338 39.130 23.89 6.05 30.25 3.13
16 17 4.301072 AGTGGTAAAATGCTAGCAGGAA 57.699 40.909 23.89 5.67 30.25 3.36
17 18 4.301072 AAGTGGTAAAATGCTAGCAGGA 57.699 40.909 23.89 5.07 30.25 3.86
18 19 5.391312 AAAAGTGGTAAAATGCTAGCAGG 57.609 39.130 23.89 0.00 30.25 4.85
19 20 7.119846 AGTCTAAAAGTGGTAAAATGCTAGCAG 59.880 37.037 23.89 3.37 30.25 4.24
20 21 6.940298 AGTCTAAAAGTGGTAAAATGCTAGCA 59.060 34.615 21.85 21.85 0.00 3.49
21 22 7.379098 AGTCTAAAAGTGGTAAAATGCTAGC 57.621 36.000 8.10 8.10 0.00 3.42
23 24 9.959749 CAAAAGTCTAAAAGTGGTAAAATGCTA 57.040 29.630 0.00 0.00 0.00 3.49
28 29 7.698970 CGCTTCAAAAGTCTAAAAGTGGTAAAA 59.301 33.333 0.00 0.00 0.00 1.52
57 58 1.538047 TTGACAGGAATGCAGGAAGC 58.462 50.000 0.00 0.00 45.96 3.86
81 82 2.225343 TGGGGACAGGCAAAATCAATCT 60.225 45.455 0.00 0.00 35.01 2.40
102 103 3.367806 CGGATCAGCATCGTGAGGATAAT 60.368 47.826 0.00 0.00 32.85 1.28
114 115 1.525535 GAAGCCTGCGGATCAGCAT 60.526 57.895 20.95 6.17 46.97 3.79
115 116 1.329913 TAGAAGCCTGCGGATCAGCA 61.330 55.000 19.59 19.59 45.96 4.41
123 124 2.593346 AGATGTTCTAGAAGCCTGCG 57.407 50.000 5.12 0.00 0.00 5.18
127 128 5.978322 CGGTAGTTAAGATGTTCTAGAAGCC 59.022 44.000 5.12 0.00 0.00 4.35
187 189 3.754850 TGGACTTCAGTTTCATGCTGATG 59.245 43.478 10.96 10.96 41.87 3.07
206 208 2.203195 AGCGCAAGTGCAAGTGGA 60.203 55.556 11.47 0.00 42.21 4.02
236 240 2.706190 AGGTTGTTAGTGGAGTTCTGCT 59.294 45.455 0.00 0.00 0.00 4.24
258 262 8.293027 TGATCCCATCTTCCTTTCCTAATTAT 57.707 34.615 0.00 0.00 0.00 1.28
260 264 6.596869 TGATCCCATCTTCCTTTCCTAATT 57.403 37.500 0.00 0.00 0.00 1.40
278 282 3.409026 AAATCATCGTAGGGCTGATCC 57.591 47.619 0.00 0.00 0.00 3.36
279 283 4.130118 ACAAAATCATCGTAGGGCTGATC 58.870 43.478 0.00 0.00 0.00 2.92
280 284 4.156455 ACAAAATCATCGTAGGGCTGAT 57.844 40.909 0.00 0.00 0.00 2.90
282 286 4.701956 AAACAAAATCATCGTAGGGCTG 57.298 40.909 0.00 0.00 0.00 4.85
283 287 5.469479 CAAAAACAAAATCATCGTAGGGCT 58.531 37.500 0.00 0.00 0.00 5.19
284 288 4.091365 GCAAAAACAAAATCATCGTAGGGC 59.909 41.667 0.00 0.00 0.00 5.19
285 289 5.226396 TGCAAAAACAAAATCATCGTAGGG 58.774 37.500 0.00 0.00 0.00 3.53
286 290 6.148948 TCTGCAAAAACAAAATCATCGTAGG 58.851 36.000 0.00 0.00 0.00 3.18
287 291 7.591057 TCTTCTGCAAAAACAAAATCATCGTAG 59.409 33.333 0.00 0.00 0.00 3.51
288 292 7.421599 TCTTCTGCAAAAACAAAATCATCGTA 58.578 30.769 0.00 0.00 0.00 3.43
293 437 5.294060 GCCTTCTTCTGCAAAAACAAAATCA 59.706 36.000 0.00 0.00 0.00 2.57
298 442 3.784338 CAGCCTTCTTCTGCAAAAACAA 58.216 40.909 0.00 0.00 0.00 2.83
307 451 0.250640 ACCACAGCAGCCTTCTTCTG 60.251 55.000 0.00 0.00 39.12 3.02
311 455 1.421646 AGTTAACCACAGCAGCCTTCT 59.578 47.619 0.88 0.00 0.00 2.85
316 460 0.954452 AAGCAGTTAACCACAGCAGC 59.046 50.000 0.88 0.00 40.38 5.25
318 462 3.181459 TGACTAAGCAGTTAACCACAGCA 60.181 43.478 0.88 0.00 40.38 4.41
323 467 5.031066 ACAAGTGACTAAGCAGTTAACCA 57.969 39.130 0.88 0.00 34.21 3.67
324 468 7.011669 TGTTAACAAGTGACTAAGCAGTTAACC 59.988 37.037 21.10 12.16 44.24 2.85
325 469 7.912383 TGTTAACAAGTGACTAAGCAGTTAAC 58.088 34.615 19.22 19.22 44.70 2.01
327 471 7.115805 CGATGTTAACAAGTGACTAAGCAGTTA 59.884 37.037 13.23 0.00 34.21 2.24
356 500 9.020731 GGTTCCCAATAATTTCAGAAGTTCTAA 57.979 33.333 4.74 0.00 0.00 2.10
376 520 1.989706 TGCAGTTGGTAAAGGTTCCC 58.010 50.000 0.00 0.00 0.00 3.97
384 528 3.957497 ACATCTGGTTTTGCAGTTGGTAA 59.043 39.130 0.00 0.00 0.00 2.85
394 538 2.540931 GCAAGTGCAACATCTGGTTTTG 59.459 45.455 0.00 0.00 41.43 2.44
396 540 2.514205 GCAAGTGCAACATCTGGTTT 57.486 45.000 0.00 0.00 41.43 3.27
423 567 1.405105 TCACCAAAAAGTGCAGCACTC 59.595 47.619 28.38 0.99 44.62 3.51
466 611 1.067212 CTTATTCACGGACGGAGGGAG 59.933 57.143 0.00 0.00 0.00 4.30
467 612 1.108776 CTTATTCACGGACGGAGGGA 58.891 55.000 0.00 0.00 0.00 4.20
468 613 0.822164 ACTTATTCACGGACGGAGGG 59.178 55.000 0.00 0.00 0.00 4.30
469 614 1.203994 ACACTTATTCACGGACGGAGG 59.796 52.381 0.00 0.00 0.00 4.30
470 615 2.649331 ACACTTATTCACGGACGGAG 57.351 50.000 0.00 0.00 0.00 4.63
471 616 2.819019 TGTACACTTATTCACGGACGGA 59.181 45.455 0.00 0.00 0.00 4.69
472 617 3.220507 TGTACACTTATTCACGGACGG 57.779 47.619 0.00 0.00 0.00 4.79
473 618 4.669318 AGATGTACACTTATTCACGGACG 58.331 43.478 0.00 0.00 0.00 4.79
474 619 5.686397 GCTAGATGTACACTTATTCACGGAC 59.314 44.000 0.00 0.00 0.00 4.79
475 620 5.593095 AGCTAGATGTACACTTATTCACGGA 59.407 40.000 0.00 0.00 0.00 4.69
476 621 5.833082 AGCTAGATGTACACTTATTCACGG 58.167 41.667 0.00 0.00 0.00 4.94
477 622 7.757097 AAAGCTAGATGTACACTTATTCACG 57.243 36.000 0.00 0.00 0.00 4.35
478 623 8.936864 ACAAAAGCTAGATGTACACTTATTCAC 58.063 33.333 0.00 0.00 0.00 3.18
580 725 9.820229 GATTCGTTGTGAAATGTACTTTGATAA 57.180 29.630 0.00 0.00 40.71 1.75
581 726 9.214957 AGATTCGTTGTGAAATGTACTTTGATA 57.785 29.630 0.00 0.00 40.71 2.15
582 727 8.099364 AGATTCGTTGTGAAATGTACTTTGAT 57.901 30.769 0.00 0.00 40.71 2.57
583 728 7.490962 AGATTCGTTGTGAAATGTACTTTGA 57.509 32.000 0.00 0.00 40.71 2.69
584 729 8.495949 ACTAGATTCGTTGTGAAATGTACTTTG 58.504 33.333 0.00 0.00 40.71 2.77
585 730 8.495949 CACTAGATTCGTTGTGAAATGTACTTT 58.504 33.333 0.00 0.00 40.71 2.66
586 731 7.870954 TCACTAGATTCGTTGTGAAATGTACTT 59.129 33.333 0.00 0.00 40.71 2.24
587 732 7.375834 TCACTAGATTCGTTGTGAAATGTACT 58.624 34.615 0.00 0.00 40.71 2.73
588 733 7.576750 TCACTAGATTCGTTGTGAAATGTAC 57.423 36.000 0.00 0.00 40.71 2.90
589 734 9.297586 GTATCACTAGATTCGTTGTGAAATGTA 57.702 33.333 0.00 1.31 41.78 2.29
590 735 8.035394 AGTATCACTAGATTCGTTGTGAAATGT 58.965 33.333 0.00 1.98 41.78 2.71
591 736 8.412608 AGTATCACTAGATTCGTTGTGAAATG 57.587 34.615 0.00 0.00 41.78 2.32
622 767 7.807907 CGGAAAAGTAAAAGCATTTATGACACT 59.192 33.333 0.00 0.00 37.28 3.55
623 768 7.593644 ACGGAAAAGTAAAAGCATTTATGACAC 59.406 33.333 0.00 0.00 37.28 3.67
624 769 7.653647 ACGGAAAAGTAAAAGCATTTATGACA 58.346 30.769 0.00 0.00 37.28 3.58
625 770 9.274065 CTACGGAAAAGTAAAAGCATTTATGAC 57.726 33.333 0.00 0.00 37.28 3.06
626 771 9.221933 TCTACGGAAAAGTAAAAGCATTTATGA 57.778 29.630 0.00 0.00 37.28 2.15
627 772 9.834628 TTCTACGGAAAAGTAAAAGCATTTATG 57.165 29.630 0.00 0.00 37.28 1.90
629 774 9.887406 CTTTCTACGGAAAAGTAAAAGCATTTA 57.113 29.630 0.00 0.00 37.95 1.40
630 775 8.410912 ACTTTCTACGGAAAAGTAAAAGCATTT 58.589 29.630 9.47 0.00 39.47 2.32
631 776 7.937649 ACTTTCTACGGAAAAGTAAAAGCATT 58.062 30.769 9.47 0.00 40.41 3.56
632 777 7.506328 ACTTTCTACGGAAAAGTAAAAGCAT 57.494 32.000 9.47 0.00 40.41 3.79
633 778 6.930667 ACTTTCTACGGAAAAGTAAAAGCA 57.069 33.333 9.47 0.00 40.41 3.91
634 779 6.635641 CCAACTTTCTACGGAAAAGTAAAAGC 59.364 38.462 11.02 0.00 40.41 3.51
635 780 7.700505 ACCAACTTTCTACGGAAAAGTAAAAG 58.299 34.615 11.02 0.00 40.41 2.27
636 781 7.336427 TGACCAACTTTCTACGGAAAAGTAAAA 59.664 33.333 11.02 0.00 40.41 1.52
637 782 6.822676 TGACCAACTTTCTACGGAAAAGTAAA 59.177 34.615 11.02 0.00 40.41 2.01
638 783 6.347696 TGACCAACTTTCTACGGAAAAGTAA 58.652 36.000 11.02 0.00 40.41 2.24
639 784 5.916318 TGACCAACTTTCTACGGAAAAGTA 58.084 37.500 11.02 0.00 40.41 2.24
640 785 4.773013 TGACCAACTTTCTACGGAAAAGT 58.227 39.130 6.34 6.34 40.41 2.66
641 786 5.744666 TTGACCAACTTTCTACGGAAAAG 57.255 39.130 5.28 5.28 40.41 2.27
642 787 6.512342 TTTTGACCAACTTTCTACGGAAAA 57.488 33.333 0.00 0.00 40.41 2.29
643 788 6.702716 ATTTTGACCAACTTTCTACGGAAA 57.297 33.333 0.00 0.00 38.90 3.13
644 789 6.702716 AATTTTGACCAACTTTCTACGGAA 57.297 33.333 0.00 0.00 0.00 4.30
645 790 6.702716 AAATTTTGACCAACTTTCTACGGA 57.297 33.333 0.00 0.00 0.00 4.69
646 791 8.859517 TTAAAATTTTGACCAACTTTCTACGG 57.140 30.769 13.76 0.00 0.00 4.02
650 795 9.448438 AAGCTTTAAAATTTTGACCAACTTTCT 57.552 25.926 13.76 0.00 0.00 2.52
652 797 9.838975 CAAAGCTTTAAAATTTTGACCAACTTT 57.161 25.926 12.25 11.55 33.50 2.66
653 798 9.225436 TCAAAGCTTTAAAATTTTGACCAACTT 57.775 25.926 12.25 6.77 35.34 2.66
654 799 8.664798 GTCAAAGCTTTAAAATTTTGACCAACT 58.335 29.630 27.24 1.16 46.80 3.16
655 800 8.820628 GTCAAAGCTTTAAAATTTTGACCAAC 57.179 30.769 27.24 15.13 46.80 3.77
660 805 9.097257 CCTGAAGTCAAAGCTTTAAAATTTTGA 57.903 29.630 12.25 16.72 37.25 2.69
661 806 7.852454 GCCTGAAGTCAAAGCTTTAAAATTTTG 59.148 33.333 12.25 13.80 33.09 2.44
662 807 7.552330 TGCCTGAAGTCAAAGCTTTAAAATTTT 59.448 29.630 12.25 8.75 0.00 1.82
663 808 7.047271 TGCCTGAAGTCAAAGCTTTAAAATTT 58.953 30.769 12.25 3.82 0.00 1.82
664 809 6.581712 TGCCTGAAGTCAAAGCTTTAAAATT 58.418 32.000 12.25 8.66 0.00 1.82
665 810 6.160576 TGCCTGAAGTCAAAGCTTTAAAAT 57.839 33.333 12.25 0.00 0.00 1.82
666 811 5.590530 TGCCTGAAGTCAAAGCTTTAAAA 57.409 34.783 12.25 0.00 0.00 1.52
667 812 5.590530 TTGCCTGAAGTCAAAGCTTTAAA 57.409 34.783 12.25 0.00 0.00 1.52
668 813 5.590530 TTTGCCTGAAGTCAAAGCTTTAA 57.409 34.783 12.25 0.00 0.00 1.52
669 814 5.590530 TTTTGCCTGAAGTCAAAGCTTTA 57.409 34.783 12.25 0.00 34.21 1.85
670 815 4.436332 CTTTTGCCTGAAGTCAAAGCTTT 58.564 39.130 5.69 5.69 34.21 3.51
671 816 3.739209 GCTTTTGCCTGAAGTCAAAGCTT 60.739 43.478 7.52 0.00 40.15 3.74
672 817 2.223900 GCTTTTGCCTGAAGTCAAAGCT 60.224 45.455 7.52 0.00 40.15 3.74
673 818 2.130395 GCTTTTGCCTGAAGTCAAAGC 58.870 47.619 0.00 0.00 40.15 3.51
687 832 8.110612 CGTGAATAAGTGTACATCTAGCTTTTG 58.889 37.037 0.00 0.00 0.00 2.44
688 833 7.277981 CCGTGAATAAGTGTACATCTAGCTTTT 59.722 37.037 0.00 0.00 0.00 2.27
689 834 6.757010 CCGTGAATAAGTGTACATCTAGCTTT 59.243 38.462 0.00 0.00 0.00 3.51
690 835 6.096423 TCCGTGAATAAGTGTACATCTAGCTT 59.904 38.462 0.00 0.00 0.00 3.74
691 836 5.593095 TCCGTGAATAAGTGTACATCTAGCT 59.407 40.000 0.00 0.00 0.00 3.32
692 837 5.686397 GTCCGTGAATAAGTGTACATCTAGC 59.314 44.000 0.00 0.00 0.00 3.42
693 838 5.907945 CGTCCGTGAATAAGTGTACATCTAG 59.092 44.000 0.00 0.00 0.00 2.43
694 839 5.220912 CCGTCCGTGAATAAGTGTACATCTA 60.221 44.000 0.00 0.00 0.00 1.98
695 840 4.439700 CCGTCCGTGAATAAGTGTACATCT 60.440 45.833 0.00 0.00 0.00 2.90
696 841 3.795101 CCGTCCGTGAATAAGTGTACATC 59.205 47.826 0.00 0.00 0.00 3.06
697 842 3.444742 TCCGTCCGTGAATAAGTGTACAT 59.555 43.478 0.00 0.00 0.00 2.29
698 843 2.819019 TCCGTCCGTGAATAAGTGTACA 59.181 45.455 0.00 0.00 0.00 2.90
699 844 3.432782 CTCCGTCCGTGAATAAGTGTAC 58.567 50.000 0.00 0.00 0.00 2.90
700 845 2.424601 CCTCCGTCCGTGAATAAGTGTA 59.575 50.000 0.00 0.00 0.00 2.90
701 846 1.203994 CCTCCGTCCGTGAATAAGTGT 59.796 52.381 0.00 0.00 0.00 3.55
702 847 1.475280 TCCTCCGTCCGTGAATAAGTG 59.525 52.381 0.00 0.00 0.00 3.16
703 848 1.749634 CTCCTCCGTCCGTGAATAAGT 59.250 52.381 0.00 0.00 0.00 2.24
704 849 1.749634 ACTCCTCCGTCCGTGAATAAG 59.250 52.381 0.00 0.00 0.00 1.73
705 850 1.843368 ACTCCTCCGTCCGTGAATAA 58.157 50.000 0.00 0.00 0.00 1.40
706 851 2.292267 GTACTCCTCCGTCCGTGAATA 58.708 52.381 0.00 0.00 0.00 1.75
707 852 1.101331 GTACTCCTCCGTCCGTGAAT 58.899 55.000 0.00 0.00 0.00 2.57
708 853 1.300971 CGTACTCCTCCGTCCGTGAA 61.301 60.000 0.00 0.00 0.00 3.18
709 854 1.742880 CGTACTCCTCCGTCCGTGA 60.743 63.158 0.00 0.00 0.00 4.35
710 855 1.742880 TCGTACTCCTCCGTCCGTG 60.743 63.158 0.00 0.00 0.00 4.94
711 856 1.743252 GTCGTACTCCTCCGTCCGT 60.743 63.158 0.00 0.00 0.00 4.69
712 857 1.427592 GAGTCGTACTCCTCCGTCCG 61.428 65.000 4.29 0.00 39.28 4.79
713 858 0.392193 TGAGTCGTACTCCTCCGTCC 60.392 60.000 11.01 0.00 44.44 4.79
714 859 0.726256 GTGAGTCGTACTCCTCCGTC 59.274 60.000 11.01 0.00 44.44 4.79
715 860 0.676151 GGTGAGTCGTACTCCTCCGT 60.676 60.000 11.01 0.00 44.44 4.69
716 861 0.675837 TGGTGAGTCGTACTCCTCCG 60.676 60.000 11.01 0.00 44.44 4.63
717 862 1.096416 CTGGTGAGTCGTACTCCTCC 58.904 60.000 11.01 12.53 44.44 4.30
718 863 1.738908 GTCTGGTGAGTCGTACTCCTC 59.261 57.143 11.01 0.00 44.44 3.71
719 864 1.073444 TGTCTGGTGAGTCGTACTCCT 59.927 52.381 11.01 0.00 44.44 3.69
720 865 1.199558 GTGTCTGGTGAGTCGTACTCC 59.800 57.143 11.01 4.64 44.44 3.85
721 866 1.199558 GGTGTCTGGTGAGTCGTACTC 59.800 57.143 7.74 7.74 45.26 2.59
722 867 1.202903 AGGTGTCTGGTGAGTCGTACT 60.203 52.381 0.00 0.00 0.00 2.73
723 868 1.068472 CAGGTGTCTGGTGAGTCGTAC 60.068 57.143 0.00 0.00 37.36 3.67
724 869 1.244816 CAGGTGTCTGGTGAGTCGTA 58.755 55.000 0.00 0.00 37.36 3.43
725 870 2.041976 CAGGTGTCTGGTGAGTCGT 58.958 57.895 0.00 0.00 37.36 4.34
784 929 4.156008 GTCGAGTAAGGCAAAATTGTGGAT 59.844 41.667 0.00 0.00 0.00 3.41
786 931 3.365969 GGTCGAGTAAGGCAAAATTGTGG 60.366 47.826 0.00 0.00 0.00 4.17
792 937 2.103432 TGTCTGGTCGAGTAAGGCAAAA 59.897 45.455 0.00 0.00 0.00 2.44
803 948 5.601662 GATTCCTGATTATTGTCTGGTCGA 58.398 41.667 0.00 0.00 38.13 4.20
870 1015 4.827284 ACAACCTACAAATTCAGAACAGGG 59.173 41.667 0.00 0.00 0.00 4.45
958 1103 2.121786 ACACAGTACGTACAAGCAACG 58.878 47.619 26.55 10.32 45.64 4.10
1042 1187 1.528824 GGATGGAGCAGCTGCCTTA 59.471 57.895 34.39 20.73 43.38 2.69
1061 1206 0.387622 CATGGCACTCCTGCGTTTTG 60.388 55.000 0.00 0.00 45.31 2.44
1113 1258 1.520787 CACCCATACCTCGCCGTTC 60.521 63.158 0.00 0.00 0.00 3.95
1172 1317 2.256158 CGTACACCGACGGCTTGA 59.744 61.111 15.39 0.00 39.19 3.02
1204 1349 3.760035 CCTCCTCGTCACCGTGGG 61.760 72.222 0.00 0.00 45.48 4.61
1206 1351 4.436998 GGCCTCCTCGTCACCGTG 62.437 72.222 0.00 0.00 35.01 4.94
1210 1355 2.753043 TACCGGCCTCCTCGTCAC 60.753 66.667 0.00 0.00 0.00 3.67
1306 1451 3.728076 TTGCTCGAGTAAGTTGACAGT 57.272 42.857 12.24 0.00 0.00 3.55
1318 1463 2.099062 GCCAACGCATTGCTCGAG 59.901 61.111 8.45 8.45 34.17 4.04
1357 1509 5.784177 CCAACGTATCTAGGTCATTAGCAT 58.216 41.667 0.00 0.00 0.00 3.79
1358 1510 4.500887 GCCAACGTATCTAGGTCATTAGCA 60.501 45.833 0.00 0.00 0.00 3.49
1369 1521 2.526304 GCCTCATGCCAACGTATCTA 57.474 50.000 0.00 0.00 0.00 1.98
1399 1551 6.071984 CCTGGGTGATCTATAGTTCTACTGT 58.928 44.000 11.25 0.00 0.00 3.55
1400 1552 6.071984 ACCTGGGTGATCTATAGTTCTACTG 58.928 44.000 11.25 6.28 0.00 2.74
1427 1579 9.798994 GGTGTTATTTATATATGTCCTCCGTAG 57.201 37.037 0.00 0.00 0.00 3.51
1453 1605 8.654215 TCGTATTCGTATAGATAGCAGTAACTG 58.346 37.037 0.00 0.00 38.33 3.16
1466 1619 8.221100 CCCATTGTTCAATTCGTATTCGTATAG 58.779 37.037 0.00 0.00 38.33 1.31
1467 1620 7.711772 ACCCATTGTTCAATTCGTATTCGTATA 59.288 33.333 0.00 0.00 38.33 1.47
1468 1621 6.540914 ACCCATTGTTCAATTCGTATTCGTAT 59.459 34.615 0.00 0.00 38.33 3.06
1469 1622 5.875910 ACCCATTGTTCAATTCGTATTCGTA 59.124 36.000 0.00 0.00 38.33 3.43
1470 1623 4.698304 ACCCATTGTTCAATTCGTATTCGT 59.302 37.500 0.00 0.00 38.33 3.85
1471 1624 5.229921 ACCCATTGTTCAATTCGTATTCG 57.770 39.130 0.00 0.00 38.55 3.34
1472 1625 7.643764 CACATACCCATTGTTCAATTCGTATTC 59.356 37.037 9.59 0.00 0.00 1.75
1473 1626 7.338196 TCACATACCCATTGTTCAATTCGTATT 59.662 33.333 9.59 0.00 0.00 1.89
1487 1640 5.700373 GTGCAAACATTTTCACATACCCATT 59.300 36.000 2.78 0.00 35.00 3.16
1495 1648 3.223423 ACACGTGCAAACATTTTCACA 57.777 38.095 17.22 0.00 34.65 3.58
1496 1649 6.799441 TCATATACACGTGCAAACATTTTCAC 59.201 34.615 17.22 0.00 32.23 3.18
1498 1651 6.021468 GCTCATATACACGTGCAAACATTTTC 60.021 38.462 17.22 0.00 0.00 2.29
1499 1652 5.799936 GCTCATATACACGTGCAAACATTTT 59.200 36.000 17.22 0.00 0.00 1.82
1511 1664 0.159554 CGCAAGCGCTCATATACACG 59.840 55.000 12.06 2.00 35.30 4.49
1512 1665 1.190323 GACGCAAGCGCTCATATACAC 59.810 52.381 12.06 0.00 44.19 2.90
1514 1667 1.772182 AGACGCAAGCGCTCATATAC 58.228 50.000 12.06 1.00 44.19 1.47
1515 1668 3.850122 ATAGACGCAAGCGCTCATATA 57.150 42.857 12.06 0.00 44.19 0.86
1516 1669 2.732412 ATAGACGCAAGCGCTCATAT 57.268 45.000 12.06 0.00 44.19 1.78
1517 1670 2.552743 AGTATAGACGCAAGCGCTCATA 59.447 45.455 12.06 6.40 44.19 2.15
1518 1671 1.338337 AGTATAGACGCAAGCGCTCAT 59.662 47.619 12.06 7.35 44.19 2.90
1519 1672 0.738975 AGTATAGACGCAAGCGCTCA 59.261 50.000 12.06 0.00 44.19 4.26
1520 1673 1.124462 CAGTATAGACGCAAGCGCTC 58.876 55.000 12.06 11.06 44.19 5.03
1521 1674 0.456221 ACAGTATAGACGCAAGCGCT 59.544 50.000 15.09 2.64 44.19 5.92
1522 1675 0.572590 CACAGTATAGACGCAAGCGC 59.427 55.000 15.09 0.00 44.19 5.92
1523 1676 1.909376 ACACAGTATAGACGCAAGCG 58.091 50.000 13.50 13.50 46.03 4.68
1524 1677 5.773239 TTTAACACAGTATAGACGCAAGC 57.227 39.130 0.00 0.00 45.62 4.01
1555 1708 9.295825 CCCAATAATCTATAACCATAACTGCAA 57.704 33.333 0.00 0.00 0.00 4.08
1558 1711 8.862325 TGCCCAATAATCTATAACCATAACTG 57.138 34.615 0.00 0.00 0.00 3.16
1560 1713 9.686683 ATCTGCCCAATAATCTATAACCATAAC 57.313 33.333 0.00 0.00 0.00 1.89
1563 1716 7.349598 GGATCTGCCCAATAATCTATAACCAT 58.650 38.462 0.00 0.00 0.00 3.55
1586 1739 8.723311 CGTGTTTTATTATTTACAGTCTTGGGA 58.277 33.333 0.00 0.00 0.00 4.37
1592 1745 9.698617 GTCCATCGTGTTTTATTATTTACAGTC 57.301 33.333 0.00 0.00 0.00 3.51
1762 1920 1.270839 CGGTCCCAATCACAACAGACT 60.271 52.381 0.00 0.00 0.00 3.24
1763 1921 1.156736 CGGTCCCAATCACAACAGAC 58.843 55.000 0.00 0.00 0.00 3.51
1777 1935 1.972872 AGAATGGATCATTGCGGTCC 58.027 50.000 0.00 0.00 33.90 4.46
1784 1942 2.872245 CGGCGTACAAGAATGGATCATT 59.128 45.455 0.00 0.00 36.72 2.57
1788 1946 0.828022 TCCGGCGTACAAGAATGGAT 59.172 50.000 6.01 0.00 0.00 3.41
1798 1956 1.449418 CGATCGTTTATTCCGGCGTAC 59.551 52.381 7.03 0.00 0.00 3.67
1799 1957 1.333308 TCGATCGTTTATTCCGGCGTA 59.667 47.619 15.94 0.00 0.00 4.42
1800 1958 0.101040 TCGATCGTTTATTCCGGCGT 59.899 50.000 15.94 0.00 0.00 5.68
1801 1959 0.501435 GTCGATCGTTTATTCCGGCG 59.499 55.000 15.94 0.00 0.00 6.46
1802 1960 0.857287 GGTCGATCGTTTATTCCGGC 59.143 55.000 15.94 0.00 0.00 6.13
1803 1961 2.124903 CAGGTCGATCGTTTATTCCGG 58.875 52.381 15.94 0.00 0.00 5.14
1804 1962 3.074504 TCAGGTCGATCGTTTATTCCG 57.925 47.619 15.94 6.43 0.00 4.30
1885 2049 6.269315 GCTAGATAATGGACGACATAGATGG 58.731 44.000 0.00 0.00 39.40 3.51
1909 2076 3.064987 AAGGGTGGAGCGTCGATCG 62.065 63.158 9.36 9.36 43.12 3.69
1926 2093 0.537188 GGAGGAATCAGCTCGTCCAA 59.463 55.000 9.06 0.00 45.66 3.53
2014 2181 0.855349 CGATACTGCAGGACATTCGC 59.145 55.000 19.93 0.00 0.00 4.70
2029 2196 5.127031 TGTCATCATGAACCTTGACTCGATA 59.873 40.000 21.70 4.94 39.33 2.92
2083 2250 1.702182 TGTTCAGATGCAAAGGCCAA 58.298 45.000 5.01 0.00 40.13 4.52
2084 2251 1.702182 TTGTTCAGATGCAAAGGCCA 58.298 45.000 5.01 0.00 40.13 5.36
2138 2305 4.579454 ATTGATGCATCACCTTGTATGC 57.421 40.909 28.72 0.00 46.92 3.14
2152 2319 9.485206 AAATGATGATTTTAGGCTTATTGATGC 57.515 29.630 0.00 0.00 0.00 3.91
2166 2333 7.513371 ACAACATTGCCAAAATGATGATTTT 57.487 28.000 13.23 0.00 41.58 1.82
2169 2336 5.106475 GCAACAACATTGCCAAAATGATGAT 60.106 36.000 13.23 1.50 39.38 2.45
2177 2344 4.040217 AGGAATAGCAACAACATTGCCAAA 59.960 37.500 7.97 0.00 45.98 3.28
2206 2373 1.974265 TTCGGCACACCTTCATCAAA 58.026 45.000 0.00 0.00 0.00 2.69
2241 2408 7.139896 ACGCTTTAATGTGATGTATGTTTGA 57.860 32.000 8.74 0.00 0.00 2.69
2248 2415 9.589111 TTAGATGTTACGCTTTAATGTGATGTA 57.411 29.630 8.74 0.00 0.00 2.29
2257 2424 4.330620 CCGGCTTTAGATGTTACGCTTTAA 59.669 41.667 0.00 0.00 0.00 1.52
2264 2431 2.934553 GACACCCGGCTTTAGATGTTAC 59.065 50.000 0.00 0.00 0.00 2.50
2368 2535 1.578897 TGGACCGATGGAAGATGGAA 58.421 50.000 0.00 0.00 0.00 3.53
2467 2634 0.179124 GAGATGGACTCGCACTGGAC 60.179 60.000 0.00 0.00 35.84 4.02
2471 2638 1.679305 ACGGAGATGGACTCGCACT 60.679 57.895 0.00 0.00 45.76 4.40
2516 5199 3.078196 TGGGTCTCGGCGGCATAA 61.078 61.111 10.53 0.00 0.00 1.90
2517 5200 3.845259 GTGGGTCTCGGCGGCATA 61.845 66.667 10.53 0.00 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.