Multiple sequence alignment - TraesCS1A01G084600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G084600 chr1A 100.000 2303 0 0 1 2303 70907661 70905359 0.000000e+00 4253.0
1 TraesCS1A01G084600 chr1A 97.945 146 2 1 2158 2303 551301640 551301784 3.800000e-63 252.0
2 TraesCS1A01G084600 chr1D 93.029 1994 89 31 1 1970 70458111 70456144 0.000000e+00 2867.0
3 TraesCS1A01G084600 chr1D 73.118 279 54 17 245 514 302097233 302096967 1.900000e-11 80.5
4 TraesCS1A01G084600 chr1B 93.836 1460 62 17 172 1628 111919140 111917706 0.000000e+00 2172.0
5 TraesCS1A01G084600 chr1B 91.710 193 15 1 1626 1818 111917506 111917315 1.360000e-67 267.0
6 TraesCS1A01G084600 chr1B 84.390 205 9 5 1 186 111920341 111920141 1.820000e-41 180.0
7 TraesCS1A01G084600 chr1B 90.265 113 5 5 1810 1918 111917149 111917039 2.390000e-30 143.0
8 TraesCS1A01G084600 chr2D 87.952 332 39 1 1972 2303 399440380 399440050 7.710000e-105 390.0
9 TraesCS1A01G084600 chr2D 90.830 229 19 2 1961 2189 39202762 39202536 2.870000e-79 305.0
10 TraesCS1A01G084600 chr2D 91.284 218 19 0 1972 2189 387184078 387184295 4.810000e-77 298.0
11 TraesCS1A01G084600 chr3A 86.350 337 40 5 1969 2303 234947842 234948174 1.680000e-96 363.0
12 TraesCS1A01G084600 chr3A 95.946 148 5 1 2156 2303 596240676 596240822 2.960000e-59 239.0
13 TraesCS1A01G084600 chr6D 86.053 337 43 4 1968 2303 38240669 38240336 2.180000e-95 359.0
14 TraesCS1A01G084600 chr6D 95.946 148 5 1 2156 2303 7447176 7447322 2.960000e-59 239.0
15 TraesCS1A01G084600 chr6D 95.302 149 5 2 2156 2303 454783428 454783575 3.830000e-58 235.0
16 TraesCS1A01G084600 chr4D 86.405 331 38 6 1975 2303 477009622 477009297 2.810000e-94 355.0
17 TraesCS1A01G084600 chr4D 91.892 222 18 0 1968 2189 504350529 504350750 6.180000e-81 311.0
18 TraesCS1A01G084600 chr4D 91.441 222 19 0 1968 2189 504376629 504376850 2.870000e-79 305.0
19 TraesCS1A01G084600 chr4D 91.441 222 18 1 1968 2189 504406004 504406224 1.030000e-78 303.0
20 TraesCS1A01G084600 chr2A 85.535 318 45 1 1968 2284 729342686 729343003 4.740000e-87 331.0
21 TraesCS1A01G084600 chr5D 89.712 243 23 2 1948 2189 496225607 496225366 2.220000e-80 309.0
22 TraesCS1A01G084600 chr7D 91.628 215 18 0 1975 2189 207552111 207551897 4.810000e-77 298.0
23 TraesCS1A01G084600 chr3B 75.362 345 56 26 227 559 71815468 71815795 3.090000e-29 139.0
24 TraesCS1A01G084600 chr4B 76.923 130 23 6 300 425 69304041 69304167 1.480000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G084600 chr1A 70905359 70907661 2302 True 4253.0 4253 100.00000 1 2303 1 chr1A.!!$R1 2302
1 TraesCS1A01G084600 chr1D 70456144 70458111 1967 True 2867.0 2867 93.02900 1 1970 1 chr1D.!!$R1 1969
2 TraesCS1A01G084600 chr1B 111917039 111920341 3302 True 690.5 2172 90.05025 1 1918 4 chr1B.!!$R1 1917

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
827 1870 0.460109 TGATGACCGCATTGACCTCG 60.46 55.0 0.0 0.0 34.11 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2181 3611 0.032952 TGTAGAAGTGTCGTGTGGGC 59.967 55.0 0.0 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 6.207417 TCCTTTCCTTTTCTTTCAGTGCATAG 59.793 38.462 0.00 0.00 0.00 2.23
91 104 3.491447 GCATTTATGATGTGGCCAGGAAC 60.491 47.826 5.11 0.00 0.00 3.62
107 120 6.230472 GCCAGGAACAAAACTTCCAATTATT 58.770 36.000 0.00 0.00 42.16 1.40
137 157 5.360714 AGGGCATATTTCGTTCACATGATTT 59.639 36.000 0.00 0.00 0.00 2.17
154 174 8.863049 CACATGATTTTAAAAGCACAGGAATAC 58.137 33.333 20.26 0.00 37.10 1.89
155 175 8.584157 ACATGATTTTAAAAGCACAGGAATACA 58.416 29.630 20.26 0.00 37.10 2.29
223 1258 8.529424 AGAATTGGCAATCATAGAAATTCTGA 57.471 30.769 14.04 0.00 40.82 3.27
241 1276 5.913137 TCTGACAACTTGATGTTTGGTTT 57.087 34.783 0.00 0.00 36.63 3.27
286 1321 8.893563 AGGAATCCTAATTAACATGGTCAAAA 57.106 30.769 0.00 0.00 28.47 2.44
298 1333 7.692908 AACATGGTCAAAATTTAAAGTCACG 57.307 32.000 0.00 0.00 0.00 4.35
303 1338 4.145756 GTCAAAATTTAAAGTCACGCCACG 59.854 41.667 0.00 0.00 0.00 4.94
357 1393 6.047870 CCACTAAGGATCTCAGTCTCATTTG 58.952 44.000 0.00 0.00 41.22 2.32
409 1446 6.317140 GTCCAAGCAGATGTTAGAATTCATGA 59.683 38.462 8.44 0.00 0.00 3.07
474 1515 5.948742 TTTTCTTTGTCCCATTCCTTTGT 57.051 34.783 0.00 0.00 0.00 2.83
478 1519 3.885976 TTGTCCCATTCCTTTGTACCA 57.114 42.857 0.00 0.00 0.00 3.25
547 1589 7.807977 TCATATCTTTTGCCTCTACATTTCC 57.192 36.000 0.00 0.00 0.00 3.13
600 1642 2.870411 GGTATTATGTGGCGTTGGAGAC 59.130 50.000 0.00 0.00 0.00 3.36
644 1687 0.662619 ACAACGGTGTGTGCAGAATG 59.337 50.000 4.62 0.00 36.31 2.67
668 1711 5.888105 ACAAATCGCTGTCGTATAGTAACT 58.112 37.500 0.00 0.00 36.96 2.24
669 1712 7.019774 ACAAATCGCTGTCGTATAGTAACTA 57.980 36.000 0.00 0.00 36.96 2.24
671 1714 7.970061 ACAAATCGCTGTCGTATAGTAACTAAA 59.030 33.333 0.00 0.00 36.96 1.85
672 1715 8.469902 CAAATCGCTGTCGTATAGTAACTAAAG 58.530 37.037 0.00 0.00 36.96 1.85
674 1717 7.307493 TCGCTGTCGTATAGTAACTAAAGAA 57.693 36.000 0.00 0.00 36.96 2.52
676 1719 7.693951 TCGCTGTCGTATAGTAACTAAAGAAAC 59.306 37.037 0.00 0.00 36.96 2.78
697 1740 5.526010 ACAAAATAAAAGCGGTCGTAGAG 57.474 39.130 0.00 0.00 36.95 2.43
827 1870 0.460109 TGATGACCGCATTGACCTCG 60.460 55.000 0.00 0.00 34.11 4.63
929 1972 1.534729 CTATAAAAGGGGCCATCCGC 58.465 55.000 4.39 0.00 44.97 5.54
972 2015 5.453567 ACCTTAGGAAACAAACAAGCATC 57.546 39.130 4.77 0.00 0.00 3.91
973 2016 4.892934 ACCTTAGGAAACAAACAAGCATCA 59.107 37.500 4.77 0.00 0.00 3.07
985 2031 8.613060 ACAAACAAGCATCATATATACTCCAG 57.387 34.615 0.00 0.00 0.00 3.86
1065 2111 4.329545 GAGGAGGTGGCGGTGCAA 62.330 66.667 0.00 0.00 0.00 4.08
1096 2142 0.108804 GATCGAGTTCCGCAACCTCA 60.109 55.000 0.00 0.00 38.37 3.86
1264 2310 4.425520 GTTCATCGAGGACACTAAGAAGG 58.574 47.826 0.00 0.00 0.00 3.46
1395 2441 1.347097 GCCGTCCTCGTCCGTAAAAC 61.347 60.000 0.00 0.00 35.01 2.43
1396 2442 0.039256 CCGTCCTCGTCCGTAAAACA 60.039 55.000 0.00 0.00 35.01 2.83
1404 2455 6.257193 GTCCTCGTCCGTAAAACATAATTGAT 59.743 38.462 0.00 0.00 0.00 2.57
1405 2456 7.436080 GTCCTCGTCCGTAAAACATAATTGATA 59.564 37.037 0.00 0.00 0.00 2.15
1406 2457 7.436080 TCCTCGTCCGTAAAACATAATTGATAC 59.564 37.037 0.00 0.00 0.00 2.24
1527 2578 1.667236 CATGCATGATACGGTGTGGT 58.333 50.000 22.59 0.00 0.00 4.16
1542 2593 5.300792 ACGGTGTGGTTTGTTAAATTCATCT 59.699 36.000 0.00 0.00 0.00 2.90
1707 2961 3.316029 CGGCTAATCATCTTCCATTTGCA 59.684 43.478 0.00 0.00 33.86 4.08
1730 2984 7.604164 TGCAGAATTTATTCGGAAGGATAGATC 59.396 37.037 6.77 0.00 41.56 2.75
1762 3016 2.913578 TAGGTGGTGCCGTGACGT 60.914 61.111 3.64 0.00 43.70 4.34
1880 3308 8.893563 TCAAATATACTTCCCTGGTTTGAAAT 57.106 30.769 3.28 0.00 32.93 2.17
1882 3310 9.369904 CAAATATACTTCCCTGGTTTGAAATTG 57.630 33.333 0.00 0.00 0.00 2.32
1883 3311 3.751479 ACTTCCCTGGTTTGAAATTGC 57.249 42.857 0.00 0.00 0.00 3.56
1884 3312 3.037549 ACTTCCCTGGTTTGAAATTGCA 58.962 40.909 0.00 0.00 0.00 4.08
1885 3313 3.647590 ACTTCCCTGGTTTGAAATTGCAT 59.352 39.130 0.00 0.00 0.00 3.96
1886 3314 3.681593 TCCCTGGTTTGAAATTGCATG 57.318 42.857 0.00 0.00 0.00 4.06
1887 3315 3.237746 TCCCTGGTTTGAAATTGCATGA 58.762 40.909 0.00 0.00 0.00 3.07
1888 3316 3.839490 TCCCTGGTTTGAAATTGCATGAT 59.161 39.130 0.00 0.00 0.00 2.45
1889 3317 3.936453 CCCTGGTTTGAAATTGCATGATG 59.064 43.478 0.00 0.00 0.00 3.07
1890 3318 4.563993 CCCTGGTTTGAAATTGCATGATGT 60.564 41.667 0.00 0.00 0.00 3.06
1903 3333 6.482898 TTGCATGATGTTTATAGCCCAATT 57.517 33.333 0.00 0.00 0.00 2.32
1922 3352 7.865889 GCCCAATTATTAGTATGCAACCTTAAC 59.134 37.037 0.00 0.00 0.00 2.01
1962 3392 7.039082 ACAAATTTGTTAGCCCAATCACTGTAT 60.039 33.333 18.13 0.00 38.47 2.29
1964 3394 8.588290 AATTTGTTAGCCCAATCACTGTATTA 57.412 30.769 0.00 0.00 0.00 0.98
1970 3400 8.520351 GTTAGCCCAATCACTGTATTACTTTTT 58.480 33.333 0.00 0.00 0.00 1.94
1971 3401 7.158099 AGCCCAATCACTGTATTACTTTTTC 57.842 36.000 0.00 0.00 0.00 2.29
1972 3402 6.027749 GCCCAATCACTGTATTACTTTTTCG 58.972 40.000 0.00 0.00 0.00 3.46
1973 3403 6.128117 GCCCAATCACTGTATTACTTTTTCGA 60.128 38.462 0.00 0.00 0.00 3.71
1974 3404 7.574217 GCCCAATCACTGTATTACTTTTTCGAA 60.574 37.037 0.00 0.00 0.00 3.71
1975 3405 8.293867 CCCAATCACTGTATTACTTTTTCGAAA 58.706 33.333 6.47 6.47 0.00 3.46
1976 3406 9.672086 CCAATCACTGTATTACTTTTTCGAAAA 57.328 29.630 19.08 19.08 0.00 2.29
1987 3417 9.797556 ATTACTTTTTCGAAAATACTAATGCCC 57.202 29.630 23.05 0.00 0.00 5.36
1988 3418 7.222000 ACTTTTTCGAAAATACTAATGCCCA 57.778 32.000 23.05 3.88 0.00 5.36
1989 3419 7.088272 ACTTTTTCGAAAATACTAATGCCCAC 58.912 34.615 23.05 0.00 0.00 4.61
1990 3420 6.576662 TTTTCGAAAATACTAATGCCCACA 57.423 33.333 19.08 0.00 0.00 4.17
1991 3421 5.554822 TTCGAAAATACTAATGCCCACAC 57.445 39.130 0.00 0.00 0.00 3.82
1992 3422 3.619483 TCGAAAATACTAATGCCCACACG 59.381 43.478 0.00 0.00 0.00 4.49
1993 3423 3.372822 CGAAAATACTAATGCCCACACGT 59.627 43.478 0.00 0.00 0.00 4.49
1994 3424 4.658071 GAAAATACTAATGCCCACACGTG 58.342 43.478 15.48 15.48 0.00 4.49
1995 3425 3.343941 AATACTAATGCCCACACGTGT 57.656 42.857 17.22 17.22 0.00 4.49
1996 3426 2.087501 TACTAATGCCCACACGTGTG 57.912 50.000 36.13 36.13 45.23 3.82
2005 3435 2.942545 CACACGTGTGGCAGTTTTG 58.057 52.632 35.65 11.41 42.10 2.44
2015 3445 4.633980 CAGTTTTGCAACTCGCCC 57.366 55.556 0.00 0.00 41.69 6.13
2016 3446 1.732917 CAGTTTTGCAACTCGCCCA 59.267 52.632 0.00 0.00 41.69 5.36
2017 3447 0.594796 CAGTTTTGCAACTCGCCCAC 60.595 55.000 0.00 0.00 41.69 4.61
2018 3448 1.034838 AGTTTTGCAACTCGCCCACA 61.035 50.000 0.00 0.00 39.15 4.17
2019 3449 0.869880 GTTTTGCAACTCGCCCACAC 60.870 55.000 0.00 0.00 41.33 3.82
2020 3450 2.329678 TTTTGCAACTCGCCCACACG 62.330 55.000 0.00 0.00 41.33 4.49
2021 3451 4.539083 TGCAACTCGCCCACACGT 62.539 61.111 0.00 0.00 41.33 4.49
2022 3452 4.012895 GCAACTCGCCCACACGTG 62.013 66.667 15.48 15.48 32.94 4.49
2023 3453 2.587753 CAACTCGCCCACACGTGT 60.588 61.111 17.22 17.22 41.09 4.49
2024 3454 2.587753 AACTCGCCCACACGTGTG 60.588 61.111 36.13 36.13 45.23 3.82
2034 3464 2.848562 CACACGTGTGGTTTATCGTC 57.151 50.000 35.65 0.00 42.10 4.20
2035 3465 1.458064 CACACGTGTGGTTTATCGTCC 59.542 52.381 35.65 0.00 42.10 4.79
2036 3466 1.068895 ACACGTGTGGTTTATCGTCCA 59.931 47.619 22.71 0.00 34.30 4.02
2037 3467 1.724623 CACGTGTGGTTTATCGTCCAG 59.275 52.381 7.58 0.00 34.16 3.86
2038 3468 1.342174 ACGTGTGGTTTATCGTCCAGT 59.658 47.619 0.00 0.00 34.16 4.00
2039 3469 1.724623 CGTGTGGTTTATCGTCCAGTG 59.275 52.381 0.00 0.00 34.16 3.66
2040 3470 1.463444 GTGTGGTTTATCGTCCAGTGC 59.537 52.381 0.00 0.00 34.16 4.40
2041 3471 1.070914 TGTGGTTTATCGTCCAGTGCA 59.929 47.619 0.00 0.00 34.16 4.57
2042 3472 1.732259 GTGGTTTATCGTCCAGTGCAG 59.268 52.381 0.00 0.00 34.16 4.41
2043 3473 1.346395 TGGTTTATCGTCCAGTGCAGT 59.654 47.619 0.00 0.00 0.00 4.40
2044 3474 2.224426 TGGTTTATCGTCCAGTGCAGTT 60.224 45.455 0.00 0.00 0.00 3.16
2045 3475 2.812011 GGTTTATCGTCCAGTGCAGTTT 59.188 45.455 0.00 0.00 0.00 2.66
2046 3476 3.364964 GGTTTATCGTCCAGTGCAGTTTG 60.365 47.826 0.00 0.00 0.00 2.93
2047 3477 1.438651 TATCGTCCAGTGCAGTTTGC 58.561 50.000 0.00 0.00 45.29 3.68
2058 3488 2.686558 GCAGTTTGCACGAATCTTGA 57.313 45.000 0.00 0.00 44.26 3.02
2059 3489 2.310577 GCAGTTTGCACGAATCTTGAC 58.689 47.619 0.00 0.00 44.26 3.18
2060 3490 2.286950 GCAGTTTGCACGAATCTTGACA 60.287 45.455 0.00 0.00 44.26 3.58
2061 3491 3.291585 CAGTTTGCACGAATCTTGACAC 58.708 45.455 0.00 0.00 0.00 3.67
2062 3492 2.942376 AGTTTGCACGAATCTTGACACA 59.058 40.909 0.00 0.00 0.00 3.72
2063 3493 3.565482 AGTTTGCACGAATCTTGACACAT 59.435 39.130 0.00 0.00 0.00 3.21
2064 3494 4.036734 AGTTTGCACGAATCTTGACACATT 59.963 37.500 0.00 0.00 0.00 2.71
2065 3495 3.541071 TGCACGAATCTTGACACATTG 57.459 42.857 0.00 0.00 0.00 2.82
2066 3496 3.137533 TGCACGAATCTTGACACATTGA 58.862 40.909 0.00 0.00 0.00 2.57
2067 3497 3.187022 TGCACGAATCTTGACACATTGAG 59.813 43.478 0.00 0.00 0.00 3.02
2068 3498 3.433274 GCACGAATCTTGACACATTGAGA 59.567 43.478 0.00 0.00 0.00 3.27
2069 3499 4.667668 GCACGAATCTTGACACATTGAGAC 60.668 45.833 0.00 0.00 0.00 3.36
2070 3500 4.448732 CACGAATCTTGACACATTGAGACA 59.551 41.667 0.00 0.00 0.00 3.41
2071 3501 4.687948 ACGAATCTTGACACATTGAGACAG 59.312 41.667 0.00 0.00 0.00 3.51
2072 3502 4.925646 CGAATCTTGACACATTGAGACAGA 59.074 41.667 0.00 0.00 0.00 3.41
2073 3503 5.406477 CGAATCTTGACACATTGAGACAGAA 59.594 40.000 0.00 0.00 0.00 3.02
2074 3504 6.091849 CGAATCTTGACACATTGAGACAGAAT 59.908 38.462 0.00 0.00 0.00 2.40
2075 3505 7.360691 CGAATCTTGACACATTGAGACAGAATT 60.361 37.037 0.00 0.00 0.00 2.17
2076 3506 7.756395 ATCTTGACACATTGAGACAGAATTT 57.244 32.000 0.00 0.00 0.00 1.82
2077 3507 6.962686 TCTTGACACATTGAGACAGAATTTG 58.037 36.000 0.00 0.00 0.00 2.32
2078 3508 5.112220 TGACACATTGAGACAGAATTTGC 57.888 39.130 0.00 0.00 0.00 3.68
2079 3509 4.579753 TGACACATTGAGACAGAATTTGCA 59.420 37.500 0.00 0.00 0.00 4.08
2080 3510 5.242171 TGACACATTGAGACAGAATTTGCAT 59.758 36.000 0.00 0.00 0.00 3.96
2081 3511 5.466819 ACACATTGAGACAGAATTTGCATG 58.533 37.500 0.00 0.00 0.00 4.06
2082 3512 4.326278 CACATTGAGACAGAATTTGCATGC 59.674 41.667 11.82 11.82 0.00 4.06
2083 3513 3.581024 TTGAGACAGAATTTGCATGCC 57.419 42.857 16.68 0.00 0.00 4.40
2084 3514 2.516906 TGAGACAGAATTTGCATGCCA 58.483 42.857 16.68 0.00 0.00 4.92
2085 3515 2.229543 TGAGACAGAATTTGCATGCCAC 59.770 45.455 16.68 1.98 0.00 5.01
2086 3516 1.200716 AGACAGAATTTGCATGCCACG 59.799 47.619 16.68 0.00 0.00 4.94
2087 3517 0.961019 ACAGAATTTGCATGCCACGT 59.039 45.000 16.68 0.00 0.00 4.49
2088 3518 2.158559 ACAGAATTTGCATGCCACGTA 58.841 42.857 16.68 0.00 0.00 3.57
2089 3519 2.162208 ACAGAATTTGCATGCCACGTAG 59.838 45.455 16.68 2.35 0.00 3.51
2090 3520 1.745087 AGAATTTGCATGCCACGTAGG 59.255 47.619 16.68 0.00 41.84 3.18
2091 3521 1.742831 GAATTTGCATGCCACGTAGGA 59.257 47.619 16.68 0.00 41.22 2.94
2092 3522 1.094785 ATTTGCATGCCACGTAGGAC 58.905 50.000 16.68 1.29 41.22 3.85
2094 3524 2.161078 TTGCATGCCACGTAGGACGA 62.161 55.000 16.68 0.00 46.05 4.20
2095 3525 1.878522 GCATGCCACGTAGGACGAG 60.879 63.158 6.36 0.00 46.05 4.18
2096 3526 1.807226 CATGCCACGTAGGACGAGA 59.193 57.895 5.94 0.00 46.05 4.04
2097 3527 0.525668 CATGCCACGTAGGACGAGAC 60.526 60.000 5.94 0.00 46.05 3.36
2098 3528 0.680280 ATGCCACGTAGGACGAGACT 60.680 55.000 5.94 0.00 46.05 3.24
2099 3529 1.136984 GCCACGTAGGACGAGACTG 59.863 63.158 5.94 0.00 46.05 3.51
2100 3530 1.801332 CCACGTAGGACGAGACTGG 59.199 63.158 5.94 0.00 46.05 4.00
2101 3531 0.959372 CCACGTAGGACGAGACTGGT 60.959 60.000 5.94 0.00 46.05 4.00
2102 3532 0.168348 CACGTAGGACGAGACTGGTG 59.832 60.000 5.94 0.00 46.05 4.17
2103 3533 0.250640 ACGTAGGACGAGACTGGTGT 60.251 55.000 5.94 0.00 46.05 4.16
2104 3534 0.168348 CGTAGGACGAGACTGGTGTG 59.832 60.000 0.00 0.00 46.05 3.82
2105 3535 1.245732 GTAGGACGAGACTGGTGTGT 58.754 55.000 0.00 0.00 0.00 3.72
2106 3536 1.068472 GTAGGACGAGACTGGTGTGTG 60.068 57.143 0.00 0.00 0.00 3.82
2107 3537 1.006102 GGACGAGACTGGTGTGTGG 60.006 63.158 0.00 0.00 0.00 4.17
2108 3538 1.006102 GACGAGACTGGTGTGTGGG 60.006 63.158 0.00 0.00 0.00 4.61
2109 3539 2.357517 CGAGACTGGTGTGTGGGC 60.358 66.667 0.00 0.00 0.00 5.36
2110 3540 2.357517 GAGACTGGTGTGTGGGCG 60.358 66.667 0.00 0.00 0.00 6.13
2111 3541 3.161450 AGACTGGTGTGTGGGCGT 61.161 61.111 0.00 0.00 0.00 5.68
2112 3542 2.203153 GACTGGTGTGTGGGCGTT 60.203 61.111 0.00 0.00 0.00 4.84
2113 3543 2.515991 ACTGGTGTGTGGGCGTTG 60.516 61.111 0.00 0.00 0.00 4.10
2114 3544 3.286751 CTGGTGTGTGGGCGTTGG 61.287 66.667 0.00 0.00 0.00 3.77
2115 3545 3.765894 CTGGTGTGTGGGCGTTGGA 62.766 63.158 0.00 0.00 0.00 3.53
2116 3546 2.978010 GGTGTGTGGGCGTTGGAG 60.978 66.667 0.00 0.00 0.00 3.86
2117 3547 2.110213 GTGTGTGGGCGTTGGAGA 59.890 61.111 0.00 0.00 0.00 3.71
2118 3548 1.961277 GTGTGTGGGCGTTGGAGAG 60.961 63.158 0.00 0.00 0.00 3.20
2119 3549 2.426023 GTGTGGGCGTTGGAGAGT 59.574 61.111 0.00 0.00 0.00 3.24
2120 3550 1.227853 GTGTGGGCGTTGGAGAGTT 60.228 57.895 0.00 0.00 0.00 3.01
2121 3551 0.818040 GTGTGGGCGTTGGAGAGTTT 60.818 55.000 0.00 0.00 0.00 2.66
2122 3552 0.817634 TGTGGGCGTTGGAGAGTTTG 60.818 55.000 0.00 0.00 0.00 2.93
2123 3553 1.896660 TGGGCGTTGGAGAGTTTGC 60.897 57.895 0.00 0.00 0.00 3.68
2124 3554 2.626780 GGGCGTTGGAGAGTTTGCC 61.627 63.158 0.00 0.00 41.72 4.52
2125 3555 2.626780 GGCGTTGGAGAGTTTGCCC 61.627 63.158 0.00 0.00 36.51 5.36
2126 3556 1.896660 GCGTTGGAGAGTTTGCCCA 60.897 57.895 0.00 0.00 0.00 5.36
2127 3557 1.949257 CGTTGGAGAGTTTGCCCAC 59.051 57.895 0.00 0.00 0.00 4.61
2128 3558 0.817634 CGTTGGAGAGTTTGCCCACA 60.818 55.000 0.00 0.00 0.00 4.17
2129 3559 0.668535 GTTGGAGAGTTTGCCCACAC 59.331 55.000 0.00 0.00 0.00 3.82
2130 3560 0.817634 TTGGAGAGTTTGCCCACACG 60.818 55.000 0.00 0.00 0.00 4.49
2131 3561 2.617274 GGAGAGTTTGCCCACACGC 61.617 63.158 0.00 0.00 0.00 5.34
2132 3562 2.594592 AGAGTTTGCCCACACGCC 60.595 61.111 0.00 0.00 0.00 5.68
2133 3563 3.670377 GAGTTTGCCCACACGCCC 61.670 66.667 0.00 0.00 0.00 6.13
2134 3564 4.204028 AGTTTGCCCACACGCCCT 62.204 61.111 0.00 0.00 0.00 5.19
2135 3565 3.977244 GTTTGCCCACACGCCCTG 61.977 66.667 0.00 0.00 0.00 4.45
2140 3570 4.720902 CCCACACGCCCTGCATCA 62.721 66.667 0.00 0.00 0.00 3.07
2141 3571 3.434319 CCACACGCCCTGCATCAC 61.434 66.667 0.00 0.00 0.00 3.06
2142 3572 3.792047 CACACGCCCTGCATCACG 61.792 66.667 0.00 0.00 0.00 4.35
2147 3577 3.058160 GCCCTGCATCACGCTGTT 61.058 61.111 0.00 0.00 43.06 3.16
2148 3578 2.629656 GCCCTGCATCACGCTGTTT 61.630 57.895 0.00 0.00 43.06 2.83
2149 3579 1.210931 CCCTGCATCACGCTGTTTG 59.789 57.895 0.00 0.00 43.06 2.93
2150 3580 1.443194 CCTGCATCACGCTGTTTGC 60.443 57.895 0.00 0.00 43.06 3.68
2151 3581 1.443194 CTGCATCACGCTGTTTGCC 60.443 57.895 0.00 0.00 43.06 4.52
2152 3582 2.132517 CTGCATCACGCTGTTTGCCA 62.133 55.000 0.00 0.00 43.06 4.92
2153 3583 1.443194 GCATCACGCTGTTTGCCAG 60.443 57.895 0.00 0.00 44.53 4.85
2160 3590 3.667282 CTGTTTGCCAGCTGCGCT 61.667 61.111 22.36 0.00 45.60 5.92
2175 3605 4.030452 GCTGTGTGGGCGAACTGC 62.030 66.667 0.00 0.00 45.38 4.40
2176 3606 2.281070 CTGTGTGGGCGAACTGCT 60.281 61.111 0.00 0.00 45.43 4.24
2177 3607 1.893808 CTGTGTGGGCGAACTGCTT 60.894 57.895 0.00 0.00 45.43 3.91
2178 3608 1.447317 CTGTGTGGGCGAACTGCTTT 61.447 55.000 0.00 0.00 45.43 3.51
2179 3609 1.034838 TGTGTGGGCGAACTGCTTTT 61.035 50.000 0.00 0.00 45.43 2.27
2180 3610 0.317854 GTGTGGGCGAACTGCTTTTC 60.318 55.000 0.00 0.00 45.43 2.29
2185 3615 3.339731 CGAACTGCTTTTCGCCCA 58.660 55.556 7.23 0.00 41.73 5.36
2186 3616 1.082104 CGAACTGCTTTTCGCCCAC 60.082 57.895 7.23 0.00 41.73 4.61
2187 3617 1.781025 CGAACTGCTTTTCGCCCACA 61.781 55.000 7.23 0.00 41.73 4.17
2188 3618 0.317854 GAACTGCTTTTCGCCCACAC 60.318 55.000 0.00 0.00 38.05 3.82
2189 3619 2.058829 AACTGCTTTTCGCCCACACG 62.059 55.000 0.00 0.00 38.05 4.49
2190 3620 2.203084 TGCTTTTCGCCCACACGA 60.203 55.556 0.00 0.00 41.04 4.35
2191 3621 2.251371 GCTTTTCGCCCACACGAC 59.749 61.111 0.00 0.00 42.78 4.34
2192 3622 2.539338 GCTTTTCGCCCACACGACA 61.539 57.895 0.00 0.00 42.78 4.35
2193 3623 1.278637 CTTTTCGCCCACACGACAC 59.721 57.895 0.00 0.00 42.78 3.67
2194 3624 1.153329 TTTTCGCCCACACGACACT 60.153 52.632 0.00 0.00 42.78 3.55
2195 3625 0.745128 TTTTCGCCCACACGACACTT 60.745 50.000 0.00 0.00 42.78 3.16
2196 3626 1.155424 TTTCGCCCACACGACACTTC 61.155 55.000 0.00 0.00 42.78 3.01
2197 3627 2.023414 TTCGCCCACACGACACTTCT 62.023 55.000 0.00 0.00 42.78 2.85
2198 3628 1.174078 TCGCCCACACGACACTTCTA 61.174 55.000 0.00 0.00 37.09 2.10
2199 3629 1.007336 CGCCCACACGACACTTCTAC 61.007 60.000 0.00 0.00 34.06 2.59
2200 3630 0.032952 GCCCACACGACACTTCTACA 59.967 55.000 0.00 0.00 0.00 2.74
2201 3631 1.337823 GCCCACACGACACTTCTACAT 60.338 52.381 0.00 0.00 0.00 2.29
2202 3632 2.870435 GCCCACACGACACTTCTACATT 60.870 50.000 0.00 0.00 0.00 2.71
2203 3633 2.736721 CCCACACGACACTTCTACATTG 59.263 50.000 0.00 0.00 0.00 2.82
2204 3634 3.390135 CCACACGACACTTCTACATTGT 58.610 45.455 0.00 0.00 0.00 2.71
2205 3635 3.184379 CCACACGACACTTCTACATTGTG 59.816 47.826 0.00 0.00 37.67 3.33
2206 3636 3.184379 CACACGACACTTCTACATTGTGG 59.816 47.826 0.00 0.00 36.16 4.17
2207 3637 3.069016 ACACGACACTTCTACATTGTGGA 59.931 43.478 0.00 0.00 36.16 4.02
2208 3638 4.245660 CACGACACTTCTACATTGTGGAT 58.754 43.478 3.51 0.00 36.16 3.41
2209 3639 4.091945 CACGACACTTCTACATTGTGGATG 59.908 45.833 12.58 12.58 41.71 3.51
2210 3640 3.618594 CGACACTTCTACATTGTGGATGG 59.381 47.826 16.76 10.11 40.21 3.51
2211 3641 3.347216 ACACTTCTACATTGTGGATGGC 58.653 45.455 16.76 0.00 40.21 4.40
2212 3642 3.244875 ACACTTCTACATTGTGGATGGCA 60.245 43.478 16.76 0.00 40.21 4.92
2213 3643 3.758023 CACTTCTACATTGTGGATGGCAA 59.242 43.478 16.76 0.00 40.21 4.52
2214 3644 3.758554 ACTTCTACATTGTGGATGGCAAC 59.241 43.478 16.76 0.00 40.21 4.17
2215 3645 3.719268 TCTACATTGTGGATGGCAACT 57.281 42.857 0.00 0.00 40.21 3.16
2216 3646 3.346315 TCTACATTGTGGATGGCAACTG 58.654 45.455 0.00 0.00 40.21 3.16
2217 3647 0.604578 ACATTGTGGATGGCAACTGC 59.395 50.000 0.00 0.00 40.21 4.40
2218 3648 0.604073 CATTGTGGATGGCAACTGCA 59.396 50.000 3.76 0.00 44.36 4.41
2219 3649 0.892755 ATTGTGGATGGCAACTGCAG 59.107 50.000 13.48 13.48 44.36 4.41
2220 3650 0.467844 TTGTGGATGGCAACTGCAGT 60.468 50.000 15.25 15.25 44.36 4.40
2221 3651 0.467844 TGTGGATGGCAACTGCAGTT 60.468 50.000 26.36 26.36 44.36 3.16
2222 3652 1.202867 TGTGGATGGCAACTGCAGTTA 60.203 47.619 30.67 16.98 44.36 2.24
2223 3653 1.200020 GTGGATGGCAACTGCAGTTAC 59.800 52.381 30.67 25.03 44.36 2.50
2224 3654 0.447801 GGATGGCAACTGCAGTTACG 59.552 55.000 30.67 20.47 44.36 3.18
2225 3655 0.179189 GATGGCAACTGCAGTTACGC 60.179 55.000 30.67 27.96 44.36 4.42
2226 3656 1.911293 ATGGCAACTGCAGTTACGCG 61.911 55.000 30.67 19.41 44.36 6.01
2227 3657 2.314647 GGCAACTGCAGTTACGCGA 61.315 57.895 30.67 0.00 44.36 5.87
2228 3658 1.567537 GCAACTGCAGTTACGCGAA 59.432 52.632 30.67 0.00 41.59 4.70
2229 3659 0.721483 GCAACTGCAGTTACGCGAAC 60.721 55.000 30.67 13.24 41.59 3.95
2230 3660 0.448861 CAACTGCAGTTACGCGAACG 60.449 55.000 30.67 12.86 43.37 3.95
2240 3670 2.769617 CGCGAACGTGGCAACTAG 59.230 61.111 0.00 0.00 37.61 2.57
2241 3671 2.726691 CGCGAACGTGGCAACTAGG 61.727 63.158 0.00 0.00 37.61 3.02
2242 3672 1.666872 GCGAACGTGGCAACTAGGT 60.667 57.895 6.96 0.00 37.61 3.08
2243 3673 0.388907 GCGAACGTGGCAACTAGGTA 60.389 55.000 6.96 0.00 37.61 3.08
2244 3674 1.936203 GCGAACGTGGCAACTAGGTAA 60.936 52.381 6.96 0.00 37.61 2.85
2245 3675 2.406130 CGAACGTGGCAACTAGGTAAA 58.594 47.619 0.00 0.00 37.61 2.01
2246 3676 2.156310 CGAACGTGGCAACTAGGTAAAC 59.844 50.000 0.00 0.00 37.61 2.01
2247 3677 2.914695 ACGTGGCAACTAGGTAAACA 57.085 45.000 0.00 0.00 37.61 2.83
2248 3678 2.486918 ACGTGGCAACTAGGTAAACAC 58.513 47.619 0.00 0.00 37.61 3.32
2249 3679 2.158928 ACGTGGCAACTAGGTAAACACA 60.159 45.455 8.73 0.00 37.61 3.72
2250 3680 2.222445 CGTGGCAACTAGGTAAACACAC 59.778 50.000 8.73 0.00 37.61 3.82
2251 3681 3.207778 GTGGCAACTAGGTAAACACACA 58.792 45.455 0.00 0.00 37.61 3.72
2252 3682 3.818773 GTGGCAACTAGGTAAACACACAT 59.181 43.478 0.00 0.00 37.61 3.21
2253 3683 3.818210 TGGCAACTAGGTAAACACACATG 59.182 43.478 0.00 0.00 37.61 3.21
2254 3684 3.190535 GGCAACTAGGTAAACACACATGG 59.809 47.826 0.00 0.00 0.00 3.66
2255 3685 3.365969 GCAACTAGGTAAACACACATGGC 60.366 47.826 0.00 0.00 0.00 4.40
2256 3686 3.780804 ACTAGGTAAACACACATGGCA 57.219 42.857 0.00 0.00 0.00 4.92
2257 3687 4.093472 ACTAGGTAAACACACATGGCAA 57.907 40.909 0.00 0.00 0.00 4.52
2258 3688 3.818773 ACTAGGTAAACACACATGGCAAC 59.181 43.478 0.00 0.00 0.00 4.17
2259 3689 2.944129 AGGTAAACACACATGGCAACT 58.056 42.857 0.00 0.00 37.61 3.16
2260 3690 2.622942 AGGTAAACACACATGGCAACTG 59.377 45.455 0.00 0.00 37.61 3.16
2261 3691 2.360801 GGTAAACACACATGGCAACTGT 59.639 45.455 0.00 0.00 37.61 3.55
2263 3693 1.761449 AACACACATGGCAACTGTGA 58.239 45.000 26.05 0.00 45.44 3.58
2264 3694 1.985473 ACACACATGGCAACTGTGAT 58.015 45.000 26.05 13.28 45.44 3.06
2265 3695 2.309613 ACACACATGGCAACTGTGATT 58.690 42.857 26.05 12.08 45.44 2.57
2266 3696 2.294233 ACACACATGGCAACTGTGATTC 59.706 45.455 26.05 0.00 45.44 2.52
2267 3697 2.555325 CACACATGGCAACTGTGATTCT 59.445 45.455 23.92 2.80 45.44 2.40
2268 3698 3.005050 CACACATGGCAACTGTGATTCTT 59.995 43.478 23.92 2.47 45.44 2.52
2269 3699 3.638160 ACACATGGCAACTGTGATTCTTT 59.362 39.130 23.92 1.82 45.44 2.52
2270 3700 3.985279 CACATGGCAACTGTGATTCTTTG 59.015 43.478 14.55 0.00 45.44 2.77
2271 3701 2.798976 TGGCAACTGTGATTCTTTGC 57.201 45.000 0.00 0.00 42.98 3.68
2272 3702 2.309613 TGGCAACTGTGATTCTTTGCT 58.690 42.857 5.25 0.00 43.20 3.91
2273 3703 3.485394 TGGCAACTGTGATTCTTTGCTA 58.515 40.909 5.25 0.00 43.20 3.49
2274 3704 3.503363 TGGCAACTGTGATTCTTTGCTAG 59.497 43.478 5.25 0.00 43.20 3.42
2275 3705 3.753272 GGCAACTGTGATTCTTTGCTAGA 59.247 43.478 0.00 0.00 43.20 2.43
2276 3706 4.378874 GGCAACTGTGATTCTTTGCTAGAC 60.379 45.833 0.00 0.00 43.20 2.59
2277 3707 4.667668 GCAACTGTGATTCTTTGCTAGACG 60.668 45.833 0.00 0.00 40.97 4.18
2278 3708 3.589988 ACTGTGATTCTTTGCTAGACGG 58.410 45.455 0.00 0.00 30.90 4.79
2279 3709 2.346803 TGTGATTCTTTGCTAGACGGC 58.653 47.619 0.00 0.00 30.90 5.68
2280 3710 2.289382 TGTGATTCTTTGCTAGACGGCA 60.289 45.455 0.00 0.00 40.74 5.69
2287 3717 2.363788 TTGCTAGACGGCAACTGTAG 57.636 50.000 0.00 0.00 45.64 2.74
2288 3718 1.254026 TGCTAGACGGCAACTGTAGT 58.746 50.000 0.00 0.00 39.43 2.73
2289 3719 1.616865 TGCTAGACGGCAACTGTAGTT 59.383 47.619 0.00 0.00 39.43 2.24
2298 3728 2.427360 AACTGTAGTTGCGCGTACG 58.573 52.632 11.84 11.84 44.07 3.67
2299 3729 0.318107 AACTGTAGTTGCGCGTACGT 60.318 50.000 17.90 0.00 42.83 3.57
2300 3730 1.000233 ACTGTAGTTGCGCGTACGTG 61.000 55.000 23.94 23.94 42.83 4.49
2301 3731 1.670971 CTGTAGTTGCGCGTACGTGG 61.671 60.000 28.26 16.26 42.83 4.94
2302 3732 2.806198 TAGTTGCGCGTACGTGGC 60.806 61.111 28.26 24.49 42.83 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.593770 GCACTGAAAGAAAAGGAAAGGAAAAA 59.406 34.615 0.00 0.00 37.43 1.94
129 149 8.584157 TGTATTCCTGTGCTTTTAAAATCATGT 58.416 29.630 7.66 0.00 0.00 3.21
194 1229 7.893124 ATTTCTATGATTGCCAATTCTCTGT 57.107 32.000 0.00 0.00 0.00 3.41
200 1235 8.070034 TGTCAGAATTTCTATGATTGCCAATT 57.930 30.769 0.00 0.00 0.00 2.32
223 1258 5.654650 TCCTGTAAACCAAACATCAAGTTGT 59.345 36.000 2.11 0.00 41.19 3.32
298 1333 9.037737 TGTTCTAACTATATATTTTCACGTGGC 57.962 33.333 17.00 0.00 0.00 5.01
328 1363 5.211973 AGACTGAGATCCTTAGTGGCATAA 58.788 41.667 0.00 0.00 30.44 1.90
527 1568 6.721208 TCAAAGGAAATGTAGAGGCAAAAGAT 59.279 34.615 0.00 0.00 0.00 2.40
547 1589 6.089249 ACTTATGCCTCTTTTGGTTCAAAG 57.911 37.500 0.00 0.00 34.72 2.77
588 1630 2.359850 GGCATGTCTCCAACGCCA 60.360 61.111 0.00 0.00 40.93 5.69
589 1631 1.523154 TTTGGCATGTCTCCAACGCC 61.523 55.000 0.00 0.00 42.75 5.68
590 1632 0.313672 TTTTGGCATGTCTCCAACGC 59.686 50.000 0.00 0.00 42.75 4.84
591 1633 1.608590 ACTTTTGGCATGTCTCCAACG 59.391 47.619 0.00 0.00 42.75 4.10
600 1642 4.202040 TGAGTCAGTTGAACTTTTGGCATG 60.202 41.667 0.00 0.00 0.00 4.06
644 1687 5.970023 AGTTACTATACGACAGCGATTTGTC 59.030 40.000 0.00 5.40 43.14 3.18
668 1711 7.194962 ACGACCGCTTTTATTTTGTTTCTTTA 58.805 30.769 0.00 0.00 0.00 1.85
669 1712 6.037726 ACGACCGCTTTTATTTTGTTTCTTT 58.962 32.000 0.00 0.00 0.00 2.52
671 1714 5.177725 ACGACCGCTTTTATTTTGTTTCT 57.822 34.783 0.00 0.00 0.00 2.52
672 1715 6.365050 TCTACGACCGCTTTTATTTTGTTTC 58.635 36.000 0.00 0.00 0.00 2.78
674 1717 5.697633 TCTCTACGACCGCTTTTATTTTGTT 59.302 36.000 0.00 0.00 0.00 2.83
676 1719 5.773239 TCTCTACGACCGCTTTTATTTTG 57.227 39.130 0.00 0.00 0.00 2.44
697 1740 5.652891 ACATATGACCGACCTGGAGTATATC 59.347 44.000 10.38 0.00 42.00 1.63
827 1870 7.556275 TCACATAGAAATTCCCTCATTAACCAC 59.444 37.037 0.00 0.00 0.00 4.16
929 1972 0.607489 GGATGAATGGGGATGGCGAG 60.607 60.000 0.00 0.00 0.00 5.03
972 2015 5.220951 CGACCTAGCTGCTGGAGTATATATG 60.221 48.000 15.12 0.00 0.00 1.78
973 2016 4.884744 CGACCTAGCTGCTGGAGTATATAT 59.115 45.833 15.12 0.00 0.00 0.86
985 2031 2.197577 GAACATCTTCGACCTAGCTGC 58.802 52.381 0.00 0.00 0.00 5.25
1065 2111 3.055747 GGAACTCGATCTTCTCCACCTTT 60.056 47.826 0.00 0.00 0.00 3.11
1096 2142 1.211457 GACAGGAGGCTTGATGTGGAT 59.789 52.381 5.12 0.00 0.00 3.41
1404 2455 7.094634 GCCGGCTAACACTTACATATAGTAGTA 60.095 40.741 22.15 0.00 33.43 1.82
1405 2456 6.294397 GCCGGCTAACACTTACATATAGTAGT 60.294 42.308 22.15 0.00 33.43 2.73
1406 2457 6.091437 GCCGGCTAACACTTACATATAGTAG 58.909 44.000 22.15 0.00 33.43 2.57
1512 2563 5.614923 TTAACAAACCACACCGTATCATG 57.385 39.130 0.00 0.00 0.00 3.07
1513 2564 6.827586 ATTTAACAAACCACACCGTATCAT 57.172 33.333 0.00 0.00 0.00 2.45
1514 2565 6.262496 TGAATTTAACAAACCACACCGTATCA 59.738 34.615 0.00 0.00 0.00 2.15
1515 2566 6.670233 TGAATTTAACAAACCACACCGTATC 58.330 36.000 0.00 0.00 0.00 2.24
1542 2593 7.544804 AGCTGGTATATTCATCAGTCATACA 57.455 36.000 0.00 0.00 0.00 2.29
1740 2994 2.525877 ACGGCACCACCTACCACT 60.526 61.111 0.00 0.00 35.61 4.00
1796 3050 9.485591 GTTTACATTATTACCAACTGTTGATCG 57.514 33.333 21.49 7.81 0.00 3.69
1880 3308 6.482898 AATTGGGCTATAAACATCATGCAA 57.517 33.333 0.00 0.00 0.00 4.08
1882 3310 9.793252 CTAATAATTGGGCTATAAACATCATGC 57.207 33.333 0.00 0.00 0.00 4.06
1888 3316 9.800572 TGCATACTAATAATTGGGCTATAAACA 57.199 29.630 0.00 0.00 0.00 2.83
1941 3371 7.172342 AGTAATACAGTGATTGGGCTAACAAA 58.828 34.615 0.00 0.00 33.48 2.83
1948 3378 6.027749 CGAAAAAGTAATACAGTGATTGGGC 58.972 40.000 0.00 0.00 0.00 5.36
1962 3392 8.794553 TGGGCATTAGTATTTTCGAAAAAGTAA 58.205 29.630 25.77 23.13 0.00 2.24
1964 3394 7.088272 GTGGGCATTAGTATTTTCGAAAAAGT 58.912 34.615 25.77 18.51 0.00 2.66
1970 3400 3.619483 CGTGTGGGCATTAGTATTTTCGA 59.381 43.478 0.00 0.00 0.00 3.71
1971 3401 3.372822 ACGTGTGGGCATTAGTATTTTCG 59.627 43.478 0.00 0.00 0.00 3.46
1972 3402 4.155280 ACACGTGTGGGCATTAGTATTTTC 59.845 41.667 22.71 0.00 34.19 2.29
1973 3403 4.076394 ACACGTGTGGGCATTAGTATTTT 58.924 39.130 22.71 0.00 34.19 1.82
1974 3404 3.438781 CACACGTGTGGGCATTAGTATTT 59.561 43.478 35.65 0.00 42.10 1.40
1975 3405 3.006940 CACACGTGTGGGCATTAGTATT 58.993 45.455 35.65 0.00 42.10 1.89
1976 3406 2.627945 CACACGTGTGGGCATTAGTAT 58.372 47.619 35.65 0.33 42.10 2.12
1977 3407 2.087501 CACACGTGTGGGCATTAGTA 57.912 50.000 35.65 0.00 42.10 1.82
1978 3408 2.927004 CACACGTGTGGGCATTAGT 58.073 52.632 35.65 1.12 42.10 2.24
1987 3417 1.139226 GCAAAACTGCCACACGTGTG 61.139 55.000 36.13 36.13 45.23 3.82
1988 3418 1.138671 GCAAAACTGCCACACGTGT 59.861 52.632 17.22 17.22 0.00 4.49
1989 3419 0.457509 TTGCAAAACTGCCACACGTG 60.458 50.000 15.48 15.48 0.00 4.49
1990 3420 0.457681 GTTGCAAAACTGCCACACGT 60.458 50.000 0.00 0.00 31.68 4.49
1991 3421 0.179140 AGTTGCAAAACTGCCACACG 60.179 50.000 0.00 0.00 33.50 4.49
1992 3422 1.559831 GAGTTGCAAAACTGCCACAC 58.440 50.000 0.00 0.00 33.50 3.82
1993 3423 0.100325 CGAGTTGCAAAACTGCCACA 59.900 50.000 0.00 0.00 33.50 4.17
1994 3424 1.208642 GCGAGTTGCAAAACTGCCAC 61.209 55.000 0.00 0.00 45.45 5.01
1995 3425 1.065600 GCGAGTTGCAAAACTGCCA 59.934 52.632 0.00 0.00 45.45 4.92
1996 3426 3.922175 GCGAGTTGCAAAACTGCC 58.078 55.556 0.00 0.00 45.45 4.85
2005 3435 4.012895 CACGTGTGGGCGAGTTGC 62.013 66.667 7.58 0.00 45.38 4.17
2006 3436 2.587753 ACACGTGTGGGCGAGTTG 60.588 61.111 22.71 0.00 32.21 3.16
2007 3437 2.587753 CACACGTGTGGGCGAGTT 60.588 61.111 35.65 1.93 42.10 3.01
2015 3445 1.458064 GGACGATAAACCACACGTGTG 59.542 52.381 36.13 36.13 45.23 3.82
2016 3446 1.068895 TGGACGATAAACCACACGTGT 59.931 47.619 17.22 17.22 39.04 4.49
2017 3447 1.724623 CTGGACGATAAACCACACGTG 59.275 52.381 15.48 15.48 39.04 4.49
2018 3448 1.342174 ACTGGACGATAAACCACACGT 59.658 47.619 0.00 0.00 41.57 4.49
2019 3449 1.724623 CACTGGACGATAAACCACACG 59.275 52.381 0.00 0.00 32.44 4.49
2020 3450 1.463444 GCACTGGACGATAAACCACAC 59.537 52.381 0.00 0.00 32.44 3.82
2021 3451 1.070914 TGCACTGGACGATAAACCACA 59.929 47.619 0.00 0.00 32.44 4.17
2022 3452 1.732259 CTGCACTGGACGATAAACCAC 59.268 52.381 0.00 0.00 32.44 4.16
2023 3453 1.346395 ACTGCACTGGACGATAAACCA 59.654 47.619 0.00 0.00 34.81 3.67
2024 3454 2.094762 ACTGCACTGGACGATAAACC 57.905 50.000 0.00 0.00 0.00 3.27
2025 3455 3.810373 CAAACTGCACTGGACGATAAAC 58.190 45.455 0.00 0.00 0.00 2.01
2026 3456 2.225491 GCAAACTGCACTGGACGATAAA 59.775 45.455 0.00 0.00 44.26 1.40
2027 3457 1.804151 GCAAACTGCACTGGACGATAA 59.196 47.619 0.00 0.00 44.26 1.75
2028 3458 1.438651 GCAAACTGCACTGGACGATA 58.561 50.000 0.00 0.00 44.26 2.92
2029 3459 2.247790 GCAAACTGCACTGGACGAT 58.752 52.632 0.00 0.00 44.26 3.73
2030 3460 3.731136 GCAAACTGCACTGGACGA 58.269 55.556 0.00 0.00 44.26 4.20
2039 3469 2.286950 TGTCAAGATTCGTGCAAACTGC 60.287 45.455 0.00 0.00 45.29 4.40
2040 3470 3.242706 TGTGTCAAGATTCGTGCAAACTG 60.243 43.478 0.00 0.00 0.00 3.16
2041 3471 2.942376 TGTGTCAAGATTCGTGCAAACT 59.058 40.909 0.00 0.00 0.00 2.66
2042 3472 3.332761 TGTGTCAAGATTCGTGCAAAC 57.667 42.857 0.00 0.00 0.00 2.93
2043 3473 4.036144 TCAATGTGTCAAGATTCGTGCAAA 59.964 37.500 0.00 0.00 0.00 3.68
2044 3474 3.563390 TCAATGTGTCAAGATTCGTGCAA 59.437 39.130 0.00 0.00 0.00 4.08
2045 3475 3.137533 TCAATGTGTCAAGATTCGTGCA 58.862 40.909 0.00 0.00 0.00 4.57
2046 3476 3.433274 TCTCAATGTGTCAAGATTCGTGC 59.567 43.478 0.00 0.00 0.00 5.34
2047 3477 4.448732 TGTCTCAATGTGTCAAGATTCGTG 59.551 41.667 0.00 0.00 0.00 4.35
2048 3478 4.631131 TGTCTCAATGTGTCAAGATTCGT 58.369 39.130 0.00 0.00 0.00 3.85
2049 3479 4.925646 TCTGTCTCAATGTGTCAAGATTCG 59.074 41.667 0.00 0.00 0.00 3.34
2050 3480 6.791887 TTCTGTCTCAATGTGTCAAGATTC 57.208 37.500 0.00 0.00 0.00 2.52
2051 3481 7.756395 AATTCTGTCTCAATGTGTCAAGATT 57.244 32.000 0.00 0.00 0.00 2.40
2052 3482 7.591165 CAAATTCTGTCTCAATGTGTCAAGAT 58.409 34.615 0.00 0.00 0.00 2.40
2053 3483 6.513884 GCAAATTCTGTCTCAATGTGTCAAGA 60.514 38.462 0.00 0.00 0.00 3.02
2054 3484 5.628193 GCAAATTCTGTCTCAATGTGTCAAG 59.372 40.000 0.00 0.00 0.00 3.02
2055 3485 5.067544 TGCAAATTCTGTCTCAATGTGTCAA 59.932 36.000 0.00 0.00 0.00 3.18
2056 3486 4.579753 TGCAAATTCTGTCTCAATGTGTCA 59.420 37.500 0.00 0.00 0.00 3.58
2057 3487 5.112220 TGCAAATTCTGTCTCAATGTGTC 57.888 39.130 0.00 0.00 0.00 3.67
2058 3488 5.466819 CATGCAAATTCTGTCTCAATGTGT 58.533 37.500 0.00 0.00 0.00 3.72
2059 3489 4.326278 GCATGCAAATTCTGTCTCAATGTG 59.674 41.667 14.21 0.00 0.00 3.21
2060 3490 4.491676 GCATGCAAATTCTGTCTCAATGT 58.508 39.130 14.21 0.00 0.00 2.71
2061 3491 3.863424 GGCATGCAAATTCTGTCTCAATG 59.137 43.478 21.36 0.00 0.00 2.82
2062 3492 3.512329 TGGCATGCAAATTCTGTCTCAAT 59.488 39.130 21.36 0.00 0.00 2.57
2063 3493 2.892215 TGGCATGCAAATTCTGTCTCAA 59.108 40.909 21.36 0.00 0.00 3.02
2064 3494 2.229543 GTGGCATGCAAATTCTGTCTCA 59.770 45.455 21.36 0.00 0.00 3.27
2065 3495 2.730090 CGTGGCATGCAAATTCTGTCTC 60.730 50.000 21.36 0.00 0.00 3.36
2066 3496 1.200716 CGTGGCATGCAAATTCTGTCT 59.799 47.619 21.36 0.00 0.00 3.41
2067 3497 1.068333 ACGTGGCATGCAAATTCTGTC 60.068 47.619 21.36 0.00 0.00 3.51
2068 3498 0.961019 ACGTGGCATGCAAATTCTGT 59.039 45.000 21.36 4.63 0.00 3.41
2069 3499 2.478370 CCTACGTGGCATGCAAATTCTG 60.478 50.000 21.36 3.97 0.00 3.02
2070 3500 1.745087 CCTACGTGGCATGCAAATTCT 59.255 47.619 21.36 0.00 0.00 2.40
2071 3501 1.742831 TCCTACGTGGCATGCAAATTC 59.257 47.619 21.36 1.47 35.26 2.17
2072 3502 1.472480 GTCCTACGTGGCATGCAAATT 59.528 47.619 21.36 0.40 35.26 1.82
2073 3503 1.094785 GTCCTACGTGGCATGCAAAT 58.905 50.000 21.36 2.31 35.26 2.32
2074 3504 1.295357 CGTCCTACGTGGCATGCAAA 61.295 55.000 21.36 3.78 36.74 3.68
2075 3505 1.739929 CGTCCTACGTGGCATGCAA 60.740 57.895 21.36 4.92 36.74 4.08
2076 3506 2.125713 CGTCCTACGTGGCATGCA 60.126 61.111 21.36 2.54 36.74 3.96
2077 3507 1.878522 CTCGTCCTACGTGGCATGC 60.879 63.158 9.90 9.90 43.14 4.06
2078 3508 0.525668 GTCTCGTCCTACGTGGCATG 60.526 60.000 4.87 4.87 43.14 4.06
2079 3509 0.680280 AGTCTCGTCCTACGTGGCAT 60.680 55.000 0.00 0.00 41.48 4.40
2080 3510 1.303074 AGTCTCGTCCTACGTGGCA 60.303 57.895 0.00 0.00 41.48 4.92
2081 3511 1.136984 CAGTCTCGTCCTACGTGGC 59.863 63.158 0.00 0.00 43.14 5.01
2082 3512 0.959372 ACCAGTCTCGTCCTACGTGG 60.959 60.000 0.00 0.00 43.14 4.94
2083 3513 0.168348 CACCAGTCTCGTCCTACGTG 59.832 60.000 0.00 0.00 43.14 4.49
2084 3514 0.250640 ACACCAGTCTCGTCCTACGT 60.251 55.000 0.00 0.00 43.14 3.57
2085 3515 0.168348 CACACCAGTCTCGTCCTACG 59.832 60.000 0.00 0.00 44.19 3.51
2086 3516 1.068472 CACACACCAGTCTCGTCCTAC 60.068 57.143 0.00 0.00 0.00 3.18
2087 3517 1.244816 CACACACCAGTCTCGTCCTA 58.755 55.000 0.00 0.00 0.00 2.94
2088 3518 1.464376 CCACACACCAGTCTCGTCCT 61.464 60.000 0.00 0.00 0.00 3.85
2089 3519 1.006102 CCACACACCAGTCTCGTCC 60.006 63.158 0.00 0.00 0.00 4.79
2090 3520 1.006102 CCCACACACCAGTCTCGTC 60.006 63.158 0.00 0.00 0.00 4.20
2091 3521 3.138625 CCCACACACCAGTCTCGT 58.861 61.111 0.00 0.00 0.00 4.18
2092 3522 2.357517 GCCCACACACCAGTCTCG 60.358 66.667 0.00 0.00 0.00 4.04
2093 3523 2.357517 CGCCCACACACCAGTCTC 60.358 66.667 0.00 0.00 0.00 3.36
2094 3524 2.742116 AACGCCCACACACCAGTCT 61.742 57.895 0.00 0.00 0.00 3.24
2095 3525 2.203153 AACGCCCACACACCAGTC 60.203 61.111 0.00 0.00 0.00 3.51
2096 3526 2.515991 CAACGCCCACACACCAGT 60.516 61.111 0.00 0.00 0.00 4.00
2097 3527 3.286751 CCAACGCCCACACACCAG 61.287 66.667 0.00 0.00 0.00 4.00
2098 3528 3.765894 CTCCAACGCCCACACACCA 62.766 63.158 0.00 0.00 0.00 4.17
2099 3529 2.978010 CTCCAACGCCCACACACC 60.978 66.667 0.00 0.00 0.00 4.16
2100 3530 1.961277 CTCTCCAACGCCCACACAC 60.961 63.158 0.00 0.00 0.00 3.82
2101 3531 1.978455 AACTCTCCAACGCCCACACA 61.978 55.000 0.00 0.00 0.00 3.72
2102 3532 0.818040 AAACTCTCCAACGCCCACAC 60.818 55.000 0.00 0.00 0.00 3.82
2103 3533 0.817634 CAAACTCTCCAACGCCCACA 60.818 55.000 0.00 0.00 0.00 4.17
2104 3534 1.949257 CAAACTCTCCAACGCCCAC 59.051 57.895 0.00 0.00 0.00 4.61
2105 3535 1.896660 GCAAACTCTCCAACGCCCA 60.897 57.895 0.00 0.00 0.00 5.36
2106 3536 2.626780 GGCAAACTCTCCAACGCCC 61.627 63.158 0.00 0.00 33.31 6.13
2107 3537 2.626780 GGGCAAACTCTCCAACGCC 61.627 63.158 0.00 0.00 38.85 5.68
2108 3538 1.896660 TGGGCAAACTCTCCAACGC 60.897 57.895 0.00 0.00 0.00 4.84
2109 3539 0.817634 TGTGGGCAAACTCTCCAACG 60.818 55.000 0.00 0.00 31.73 4.10
2110 3540 0.668535 GTGTGGGCAAACTCTCCAAC 59.331 55.000 0.00 0.00 31.73 3.77
2111 3541 0.817634 CGTGTGGGCAAACTCTCCAA 60.818 55.000 0.00 0.00 31.73 3.53
2112 3542 1.227823 CGTGTGGGCAAACTCTCCA 60.228 57.895 0.00 0.00 0.00 3.86
2113 3543 2.617274 GCGTGTGGGCAAACTCTCC 61.617 63.158 0.00 0.00 0.00 3.71
2114 3544 2.617274 GGCGTGTGGGCAAACTCTC 61.617 63.158 0.00 0.00 41.77 3.20
2115 3545 2.594592 GGCGTGTGGGCAAACTCT 60.595 61.111 0.00 0.00 41.77 3.24
2116 3546 3.670377 GGGCGTGTGGGCAAACTC 61.670 66.667 0.00 0.00 44.56 3.01
2117 3547 4.204028 AGGGCGTGTGGGCAAACT 62.204 61.111 0.00 0.00 44.56 2.66
2118 3548 3.977244 CAGGGCGTGTGGGCAAAC 61.977 66.667 0.00 0.00 44.56 2.93
2123 3553 4.720902 TGATGCAGGGCGTGTGGG 62.721 66.667 9.16 0.00 0.00 4.61
2124 3554 3.434319 GTGATGCAGGGCGTGTGG 61.434 66.667 9.16 0.00 0.00 4.17
2125 3555 3.792047 CGTGATGCAGGGCGTGTG 61.792 66.667 9.16 0.00 0.00 3.82
2158 3588 4.030452 GCAGTTCGCCCACACAGC 62.030 66.667 0.00 0.00 32.94 4.40
2159 3589 1.447317 AAAGCAGTTCGCCCACACAG 61.447 55.000 0.00 0.00 44.04 3.66
2160 3590 1.034838 AAAAGCAGTTCGCCCACACA 61.035 50.000 0.00 0.00 44.04 3.72
2161 3591 0.317854 GAAAAGCAGTTCGCCCACAC 60.318 55.000 0.00 0.00 44.04 3.82
2162 3592 1.781025 CGAAAAGCAGTTCGCCCACA 61.781 55.000 8.58 0.00 43.38 4.17
2163 3593 1.082104 CGAAAAGCAGTTCGCCCAC 60.082 57.895 8.58 0.00 43.38 4.61
2164 3594 3.339731 CGAAAAGCAGTTCGCCCA 58.660 55.556 8.58 0.00 43.38 5.36
2174 3604 2.251371 GTCGTGTGGGCGAAAAGC 59.749 61.111 0.00 0.00 42.82 3.51
2175 3605 1.157870 AGTGTCGTGTGGGCGAAAAG 61.158 55.000 0.00 0.00 42.82 2.27
2176 3606 0.745128 AAGTGTCGTGTGGGCGAAAA 60.745 50.000 0.00 0.00 42.82 2.29
2177 3607 1.153329 AAGTGTCGTGTGGGCGAAA 60.153 52.632 0.00 0.00 42.82 3.46
2178 3608 1.593209 GAAGTGTCGTGTGGGCGAA 60.593 57.895 0.00 0.00 42.82 4.70
2179 3609 1.174078 TAGAAGTGTCGTGTGGGCGA 61.174 55.000 0.00 0.00 38.68 5.54
2180 3610 1.007336 GTAGAAGTGTCGTGTGGGCG 61.007 60.000 0.00 0.00 0.00 6.13
2181 3611 0.032952 TGTAGAAGTGTCGTGTGGGC 59.967 55.000 0.00 0.00 0.00 5.36
2182 3612 2.736721 CAATGTAGAAGTGTCGTGTGGG 59.263 50.000 0.00 0.00 0.00 4.61
2183 3613 3.184379 CACAATGTAGAAGTGTCGTGTGG 59.816 47.826 0.00 0.00 34.08 4.17
2184 3614 3.184379 CCACAATGTAGAAGTGTCGTGTG 59.816 47.826 0.00 0.00 34.08 3.82
2185 3615 3.069016 TCCACAATGTAGAAGTGTCGTGT 59.931 43.478 0.00 0.00 34.08 4.49
2186 3616 3.649073 TCCACAATGTAGAAGTGTCGTG 58.351 45.455 0.00 0.00 34.08 4.35
2187 3617 4.245660 CATCCACAATGTAGAAGTGTCGT 58.754 43.478 0.00 0.00 34.08 4.34
2188 3618 3.618594 CCATCCACAATGTAGAAGTGTCG 59.381 47.826 0.00 0.00 34.08 4.35
2189 3619 3.375299 GCCATCCACAATGTAGAAGTGTC 59.625 47.826 0.00 0.00 34.08 3.67
2190 3620 3.244875 TGCCATCCACAATGTAGAAGTGT 60.245 43.478 0.00 0.00 37.65 3.55
2191 3621 3.346315 TGCCATCCACAATGTAGAAGTG 58.654 45.455 0.00 0.00 33.13 3.16
2192 3622 3.719268 TGCCATCCACAATGTAGAAGT 57.281 42.857 0.00 0.00 33.13 3.01
2193 3623 4.012374 AGTTGCCATCCACAATGTAGAAG 58.988 43.478 0.00 0.00 33.13 2.85
2194 3624 3.758023 CAGTTGCCATCCACAATGTAGAA 59.242 43.478 0.00 0.00 33.13 2.10
2195 3625 3.346315 CAGTTGCCATCCACAATGTAGA 58.654 45.455 0.00 0.00 33.13 2.59
2196 3626 2.159338 GCAGTTGCCATCCACAATGTAG 60.159 50.000 0.00 0.00 33.13 2.74
2197 3627 1.818060 GCAGTTGCCATCCACAATGTA 59.182 47.619 0.00 0.00 33.13 2.29
2198 3628 0.604578 GCAGTTGCCATCCACAATGT 59.395 50.000 0.00 0.00 33.13 2.71
2199 3629 0.604073 TGCAGTTGCCATCCACAATG 59.396 50.000 1.06 0.00 41.18 2.82
2200 3630 0.892755 CTGCAGTTGCCATCCACAAT 59.107 50.000 5.25 0.00 41.18 2.71
2201 3631 0.467844 ACTGCAGTTGCCATCCACAA 60.468 50.000 15.25 0.00 41.18 3.33
2202 3632 0.467844 AACTGCAGTTGCCATCCACA 60.468 50.000 30.66 0.00 41.18 4.17
2203 3633 1.200020 GTAACTGCAGTTGCCATCCAC 59.800 52.381 36.50 22.95 41.18 4.02
2204 3634 1.533625 GTAACTGCAGTTGCCATCCA 58.466 50.000 36.50 16.24 41.18 3.41
2205 3635 0.447801 CGTAACTGCAGTTGCCATCC 59.552 55.000 36.50 17.91 41.18 3.51
2206 3636 0.179189 GCGTAACTGCAGTTGCCATC 60.179 55.000 36.50 22.68 41.18 3.51
2207 3637 1.875963 GCGTAACTGCAGTTGCCAT 59.124 52.632 36.50 17.03 41.18 4.40
2208 3638 2.603247 CGCGTAACTGCAGTTGCCA 61.603 57.895 36.50 18.43 41.18 4.92
2209 3639 1.837538 TTCGCGTAACTGCAGTTGCC 61.838 55.000 36.50 26.63 41.18 4.52
2210 3640 0.721483 GTTCGCGTAACTGCAGTTGC 60.721 55.000 36.50 33.57 38.90 4.17
2211 3641 0.448861 CGTTCGCGTAACTGCAGTTG 60.449 55.000 36.50 24.02 38.90 3.16
2212 3642 1.850640 CGTTCGCGTAACTGCAGTT 59.149 52.632 32.97 32.97 41.73 3.16
2213 3643 3.534160 CGTTCGCGTAACTGCAGT 58.466 55.556 15.25 15.25 35.81 4.40
2224 3654 0.388907 TACCTAGTTGCCACGTTCGC 60.389 55.000 0.00 0.00 0.00 4.70
2225 3655 2.068837 TTACCTAGTTGCCACGTTCG 57.931 50.000 0.00 0.00 0.00 3.95
2226 3656 3.059393 GTGTTTACCTAGTTGCCACGTTC 60.059 47.826 0.00 0.00 0.00 3.95
2227 3657 2.874086 GTGTTTACCTAGTTGCCACGTT 59.126 45.455 0.00 0.00 0.00 3.99
2228 3658 2.158928 TGTGTTTACCTAGTTGCCACGT 60.159 45.455 0.00 0.00 0.00 4.49
2229 3659 2.222445 GTGTGTTTACCTAGTTGCCACG 59.778 50.000 0.00 0.00 0.00 4.94
2230 3660 3.207778 TGTGTGTTTACCTAGTTGCCAC 58.792 45.455 0.00 0.00 0.00 5.01
2231 3661 3.562343 TGTGTGTTTACCTAGTTGCCA 57.438 42.857 0.00 0.00 0.00 4.92
2232 3662 3.190535 CCATGTGTGTTTACCTAGTTGCC 59.809 47.826 0.00 0.00 0.00 4.52
2233 3663 3.365969 GCCATGTGTGTTTACCTAGTTGC 60.366 47.826 0.00 0.00 0.00 4.17
2234 3664 3.818210 TGCCATGTGTGTTTACCTAGTTG 59.182 43.478 0.00 0.00 0.00 3.16
2235 3665 4.093472 TGCCATGTGTGTTTACCTAGTT 57.907 40.909 0.00 0.00 0.00 2.24
2236 3666 3.780804 TGCCATGTGTGTTTACCTAGT 57.219 42.857 0.00 0.00 0.00 2.57
2237 3667 4.072131 AGTTGCCATGTGTGTTTACCTAG 58.928 43.478 0.00 0.00 0.00 3.02
2238 3668 3.818210 CAGTTGCCATGTGTGTTTACCTA 59.182 43.478 0.00 0.00 0.00 3.08
2239 3669 2.622942 CAGTTGCCATGTGTGTTTACCT 59.377 45.455 0.00 0.00 0.00 3.08
2240 3670 2.360801 ACAGTTGCCATGTGTGTTTACC 59.639 45.455 0.00 0.00 0.00 2.85
2241 3671 3.066064 TCACAGTTGCCATGTGTGTTTAC 59.934 43.478 11.76 0.00 46.49 2.01
2242 3672 3.282885 TCACAGTTGCCATGTGTGTTTA 58.717 40.909 11.76 0.00 46.49 2.01
2243 3673 2.098614 TCACAGTTGCCATGTGTGTTT 58.901 42.857 11.76 0.00 46.49 2.83
2244 3674 1.761449 TCACAGTTGCCATGTGTGTT 58.239 45.000 11.76 0.00 46.49 3.32
2245 3675 1.985473 ATCACAGTTGCCATGTGTGT 58.015 45.000 11.76 0.06 46.49 3.72
2246 3676 2.555325 AGAATCACAGTTGCCATGTGTG 59.445 45.455 11.40 6.99 46.49 3.82
2247 3677 2.867624 AGAATCACAGTTGCCATGTGT 58.132 42.857 11.40 0.00 46.49 3.72
2248 3678 7.738227 AGCAAAGAATCACAGTTGCCATGTG 62.738 44.000 6.69 6.69 45.93 3.21
2249 3679 3.553508 GCAAAGAATCACAGTTGCCATGT 60.554 43.478 0.00 0.00 40.35 3.21
2250 3680 2.991190 GCAAAGAATCACAGTTGCCATG 59.009 45.455 0.00 0.00 40.35 3.66
2251 3681 2.895404 AGCAAAGAATCACAGTTGCCAT 59.105 40.909 3.75 0.00 45.93 4.40
2252 3682 2.309613 AGCAAAGAATCACAGTTGCCA 58.690 42.857 3.75 0.00 45.93 4.92
2253 3683 3.753272 TCTAGCAAAGAATCACAGTTGCC 59.247 43.478 3.75 0.00 45.93 4.52
2254 3684 4.667668 CGTCTAGCAAAGAATCACAGTTGC 60.668 45.833 0.00 0.00 45.29 4.17
2255 3685 4.143030 CCGTCTAGCAAAGAATCACAGTTG 60.143 45.833 0.00 0.00 35.47 3.16
2256 3686 3.997021 CCGTCTAGCAAAGAATCACAGTT 59.003 43.478 0.00 0.00 35.47 3.16
2257 3687 3.589988 CCGTCTAGCAAAGAATCACAGT 58.410 45.455 0.00 0.00 35.47 3.55
2258 3688 2.349886 GCCGTCTAGCAAAGAATCACAG 59.650 50.000 0.00 0.00 35.47 3.66
2259 3689 2.289382 TGCCGTCTAGCAAAGAATCACA 60.289 45.455 0.00 0.00 40.56 3.58
2260 3690 2.346803 TGCCGTCTAGCAAAGAATCAC 58.653 47.619 0.00 0.00 40.56 3.06
2261 3691 2.760634 TGCCGTCTAGCAAAGAATCA 57.239 45.000 0.00 0.00 40.56 2.57
2269 3699 1.254026 ACTACAGTTGCCGTCTAGCA 58.746 50.000 0.00 0.00 42.17 3.49
2270 3700 2.365408 AACTACAGTTGCCGTCTAGC 57.635 50.000 0.00 0.00 36.80 3.42
2280 3710 0.318107 ACGTACGCGCAACTACAGTT 60.318 50.000 16.72 0.00 42.83 3.16
2281 3711 1.000233 CACGTACGCGCAACTACAGT 61.000 55.000 16.72 0.00 42.83 3.55
2282 3712 1.670971 CCACGTACGCGCAACTACAG 61.671 60.000 16.72 0.73 42.83 2.74
2283 3713 1.730192 CCACGTACGCGCAACTACA 60.730 57.895 16.72 0.00 42.83 2.74
2284 3714 3.063052 GCCACGTACGCGCAACTAC 62.063 63.158 16.72 0.00 42.83 2.73
2285 3715 2.806198 GCCACGTACGCGCAACTA 60.806 61.111 16.72 0.00 42.83 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.