Multiple sequence alignment - TraesCS1A01G082500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G082500 chr1A 100.000 2329 0 0 1 2329 65760553 65758225 0.000000e+00 4301.0
1 TraesCS1A01G082500 chr1A 84.500 200 27 3 522 718 267262521 267262323 6.570000e-46 195.0
2 TraesCS1A01G082500 chr4B 98.887 719 8 0 1 719 75737280 75737998 0.000000e+00 1284.0
3 TraesCS1A01G082500 chr4B 84.097 371 44 7 358 717 306613052 306612686 6.160000e-91 344.0
4 TraesCS1A01G082500 chr4B 94.444 36 2 0 2229 2264 145842027 145841992 3.230000e-04 56.5
5 TraesCS1A01G082500 chr5A 98.812 589 6 1 1 588 531216709 531217297 0.000000e+00 1048.0
6 TraesCS1A01G082500 chr5A 93.782 386 22 2 335 718 667027252 667026867 1.550000e-161 579.0
7 TraesCS1A01G082500 chr5A 93.567 342 17 2 1 338 6462888 6462548 2.670000e-139 505.0
8 TraesCS1A01G082500 chr5A 93.567 342 17 2 1 338 6469506 6469166 2.670000e-139 505.0
9 TraesCS1A01G082500 chr5A 85.915 355 41 8 368 718 328800862 328800513 1.020000e-98 370.0
10 TraesCS1A01G082500 chr5A 98.582 141 2 0 577 717 531218638 531218778 1.380000e-62 250.0
11 TraesCS1A01G082500 chr5A 88.372 43 5 0 2229 2271 622768457 622768415 4.000000e-03 52.8
12 TraesCS1A01G082500 chr1D 86.249 909 38 39 730 1567 66988138 66987246 0.000000e+00 905.0
13 TraesCS1A01G082500 chr1D 90.201 398 14 10 1849 2232 66987242 66986856 1.610000e-136 496.0
14 TraesCS1A01G082500 chr1B 87.500 688 49 25 859 1519 108210807 108210130 0.000000e+00 760.0
15 TraesCS1A01G082500 chr1B 94.643 280 14 1 1563 1841 167110531 167110252 1.280000e-117 433.0
16 TraesCS1A01G082500 chr1B 86.029 408 17 6 1852 2232 108210070 108209676 3.600000e-108 401.0
17 TraesCS1A01G082500 chr1B 94.783 115 6 0 749 863 108210948 108210834 1.840000e-41 180.0
18 TraesCS1A01G082500 chr1B 94.286 35 2 0 2229 2263 476018840 476018874 1.000000e-03 54.7
19 TraesCS1A01G082500 chr7A 96.793 343 6 2 1 339 735625195 735624854 3.360000e-158 568.0
20 TraesCS1A01G082500 chr7A 94.326 282 15 1 1564 1844 182858278 182857997 4.600000e-117 431.0
21 TraesCS1A01G082500 chr7A 84.577 201 28 3 522 720 675413911 675414110 1.830000e-46 196.0
22 TraesCS1A01G082500 chr3B 91.667 384 28 4 332 714 216873768 216874148 1.580000e-146 529.0
23 TraesCS1A01G082500 chr3B 91.860 86 7 0 1006 1091 245922878 245922793 1.130000e-23 121.0
24 TraesCS1A01G082500 chr3B 94.444 36 2 0 2229 2264 481914116 481914081 3.230000e-04 56.5
25 TraesCS1A01G082500 chrUn 93.567 342 17 2 1 338 345871140 345870800 2.670000e-139 505.0
26 TraesCS1A01G082500 chrUn 94.056 286 15 2 1564 1848 13888550 13888266 1.280000e-117 433.0
27 TraesCS1A01G082500 chr2D 93.787 338 17 1 1 334 35816985 35817322 2.670000e-139 505.0
28 TraesCS1A01G082500 chr2D 93.023 86 6 0 1006 1091 100318439 100318354 2.430000e-25 126.0
29 TraesCS1A01G082500 chr2D 91.358 81 7 0 1006 1086 54392651 54392731 6.800000e-21 111.0
30 TraesCS1A01G082500 chr2D 92.308 78 6 0 1012 1089 397962807 397962730 6.800000e-21 111.0
31 TraesCS1A01G082500 chr5B 91.642 335 23 2 1 331 311775606 311775939 2.110000e-125 459.0
32 TraesCS1A01G082500 chr5B 87.571 354 36 8 368 718 278008003 278007655 1.000000e-108 403.0
33 TraesCS1A01G082500 chr7B 95.636 275 11 1 1566 1839 283010550 283010824 7.640000e-120 440.0
34 TraesCS1A01G082500 chr4A 94.982 279 13 1 1564 1841 11322917 11322639 9.880000e-119 436.0
35 TraesCS1A01G082500 chr3A 94.662 281 13 2 1563 1841 601344360 601344640 3.550000e-118 435.0
36 TraesCS1A01G082500 chr3A 87.870 338 37 1 1 334 584014102 584013765 6.030000e-106 394.0
37 TraesCS1A01G082500 chr2A 94.366 284 14 2 1561 1842 70704308 70704025 3.550000e-118 435.0
38 TraesCS1A01G082500 chr2A 92.857 84 6 0 1006 1089 100129663 100129580 3.140000e-24 122.0
39 TraesCS1A01G082500 chr6B 94.643 280 14 1 1564 1842 143176106 143176385 1.280000e-117 433.0
40 TraesCS1A01G082500 chr6B 89.130 46 4 1 2229 2273 9570473 9570518 3.230000e-04 56.5
41 TraesCS1A01G082500 chr6B 94.444 36 2 0 2229 2264 18726743 18726708 3.230000e-04 56.5
42 TraesCS1A01G082500 chr6A 94.014 284 16 1 1559 1841 469114109 469114392 1.650000e-116 429.0
43 TraesCS1A01G082500 chr5D 87.324 355 37 7 368 718 244620260 244619910 1.300000e-107 399.0
44 TraesCS1A01G082500 chr3D 91.860 86 7 0 1006 1091 284206151 284206066 1.130000e-23 121.0
45 TraesCS1A01G082500 chr3D 88.235 51 3 3 2229 2277 261534231 261534280 8.990000e-05 58.4
46 TraesCS1A01G082500 chr2B 90.909 88 8 0 1006 1093 152175954 152175867 4.070000e-23 119.0
47 TraesCS1A01G082500 chr2B 89.130 46 4 1 2229 2273 779647324 779647369 3.230000e-04 56.5
48 TraesCS1A01G082500 chr4D 81.928 83 8 7 2229 2308 11573341 11573419 1.930000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G082500 chr1A 65758225 65760553 2328 True 4301.0 4301 100.000000 1 2329 1 chr1A.!!$R1 2328
1 TraesCS1A01G082500 chr4B 75737280 75737998 718 False 1284.0 1284 98.887000 1 719 1 chr4B.!!$F1 718
2 TraesCS1A01G082500 chr5A 531216709 531218778 2069 False 649.0 1048 98.697000 1 717 2 chr5A.!!$F1 716
3 TraesCS1A01G082500 chr1D 66986856 66988138 1282 True 700.5 905 88.225000 730 2232 2 chr1D.!!$R1 1502
4 TraesCS1A01G082500 chr1B 108209676 108210948 1272 True 447.0 760 89.437333 749 2232 3 chr1B.!!$R2 1483

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
939 2328 0.817013 GCTCTGCTCAGCTCTAGTGT 59.183 55.0 0.0 0.0 36.38 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2308 3797 0.251165 ATAGGTTGCAGCCGGTGTTT 60.251 50.0 14.49 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
375 377 3.995199 TGAAAGACTGTCTGGATGTCAC 58.005 45.455 11.71 0.00 33.56 3.67
719 2073 2.166664 GCACAAACCAAACACACCCTAA 59.833 45.455 0.00 0.00 0.00 2.69
720 2074 3.181470 GCACAAACCAAACACACCCTAAT 60.181 43.478 0.00 0.00 0.00 1.73
721 2075 4.682050 GCACAAACCAAACACACCCTAATT 60.682 41.667 0.00 0.00 0.00 1.40
722 2076 4.808364 CACAAACCAAACACACCCTAATTG 59.192 41.667 0.00 0.00 0.00 2.32
723 2077 4.141824 ACAAACCAAACACACCCTAATTGG 60.142 41.667 0.00 0.00 44.75 3.16
724 2078 3.322191 ACCAAACACACCCTAATTGGT 57.678 42.857 2.79 2.79 46.62 3.67
914 2303 2.617215 ACCACCCCTTCCCATCCC 60.617 66.667 0.00 0.00 0.00 3.85
915 2304 2.616893 CCACCCCTTCCCATCCCA 60.617 66.667 0.00 0.00 0.00 4.37
916 2305 2.014550 CCACCCCTTCCCATCCCAT 61.015 63.158 0.00 0.00 0.00 4.00
917 2306 1.538666 CACCCCTTCCCATCCCATC 59.461 63.158 0.00 0.00 0.00 3.51
919 2308 2.473365 CCCCTTCCCATCCCATCCC 61.473 68.421 0.00 0.00 0.00 3.85
936 2325 1.359833 CCGCTCTGCTCAGCTCTAG 59.640 63.158 0.00 0.00 37.25 2.43
939 2328 0.817013 GCTCTGCTCAGCTCTAGTGT 59.183 55.000 0.00 0.00 36.38 3.55
942 2331 3.864160 GCTCTGCTCAGCTCTAGTGTTTT 60.864 47.826 0.00 0.00 36.38 2.43
944 2333 3.576118 TCTGCTCAGCTCTAGTGTTTTCT 59.424 43.478 0.00 0.00 0.00 2.52
1118 2510 3.944650 GCCAGATTCTTTCCTCTTTCTCC 59.055 47.826 0.00 0.00 0.00 3.71
1120 2512 4.522114 CAGATTCTTTCCTCTTTCTCCCC 58.478 47.826 0.00 0.00 0.00 4.81
1123 2515 2.180276 TCTTTCCTCTTTCTCCCCTCG 58.820 52.381 0.00 0.00 0.00 4.63
1180 2576 8.339714 GGTTGATAGATGCGTAGATAGATAGAC 58.660 40.741 0.00 0.00 0.00 2.59
1183 2579 8.261522 TGATAGATGCGTAGATAGATAGACAGT 58.738 37.037 0.00 0.00 0.00 3.55
1184 2580 6.735678 AGATGCGTAGATAGATAGACAGTG 57.264 41.667 0.00 0.00 0.00 3.66
1186 2582 5.926214 TGCGTAGATAGATAGACAGTGAC 57.074 43.478 0.00 0.00 0.00 3.67
1187 2583 5.365619 TGCGTAGATAGATAGACAGTGACA 58.634 41.667 0.00 0.00 0.00 3.58
1188 2584 5.998363 TGCGTAGATAGATAGACAGTGACAT 59.002 40.000 0.00 0.00 0.00 3.06
1190 2586 7.332182 TGCGTAGATAGATAGACAGTGACATAG 59.668 40.741 0.00 0.00 0.00 2.23
1231 2653 7.224753 TCTGATTACTGATAATCGTTTCTTGGC 59.775 37.037 3.33 0.00 46.76 4.52
1236 2658 5.352569 ACTGATAATCGTTTCTTGGCTTCTG 59.647 40.000 0.00 0.00 0.00 3.02
1330 2752 3.592059 TCTACGCCATCACCAAGTAAAC 58.408 45.455 0.00 0.00 0.00 2.01
1331 2753 2.561478 ACGCCATCACCAAGTAAACT 57.439 45.000 0.00 0.00 0.00 2.66
1333 2755 3.596214 ACGCCATCACCAAGTAAACTAG 58.404 45.455 0.00 0.00 0.00 2.57
1357 2779 1.597027 AAGCCGTCCCAAGTGTTCG 60.597 57.895 0.00 0.00 0.00 3.95
1422 2862 0.817634 TCCTTGCTTGTGTGGGTTCG 60.818 55.000 0.00 0.00 0.00 3.95
1436 2876 6.095720 TGTGTGGGTTCGTTTAATTCTTTTCT 59.904 34.615 0.00 0.00 0.00 2.52
1463 2903 2.032549 CGTTGATGATGCGAATTCCTCC 60.033 50.000 0.00 0.00 0.00 4.30
1473 2913 1.084289 GAATTCCTCCGTGGTTTCCG 58.916 55.000 0.00 0.00 37.07 4.30
1495 2936 1.406069 GGACCGTGTGAAGAGCATCAT 60.406 52.381 0.00 0.00 37.82 2.45
1567 3027 9.163899 GTGGGAATACTTCTTCTTAAAGTTAGG 57.836 37.037 0.00 0.00 38.00 2.69
1568 3028 7.827729 TGGGAATACTTCTTCTTAAAGTTAGGC 59.172 37.037 0.00 0.00 38.00 3.93
1570 3030 8.884726 GGAATACTTCTTCTTAAAGTTAGGCTG 58.115 37.037 0.00 0.00 38.00 4.85
1571 3031 8.794335 AATACTTCTTCTTAAAGTTAGGCTGG 57.206 34.615 0.00 0.00 38.00 4.85
1572 3032 6.189036 ACTTCTTCTTAAAGTTAGGCTGGT 57.811 37.500 0.00 0.00 33.19 4.00
1573 3033 6.231951 ACTTCTTCTTAAAGTTAGGCTGGTC 58.768 40.000 0.00 0.00 33.19 4.02
1574 3034 5.818678 TCTTCTTAAAGTTAGGCTGGTCA 57.181 39.130 0.00 0.00 33.95 4.02
1575 3035 5.548406 TCTTCTTAAAGTTAGGCTGGTCAC 58.452 41.667 0.00 0.00 33.95 3.67
1576 3036 4.967084 TCTTAAAGTTAGGCTGGTCACA 57.033 40.909 0.00 0.00 0.00 3.58
1577 3037 5.298989 TCTTAAAGTTAGGCTGGTCACAA 57.701 39.130 0.00 0.00 0.00 3.33
1578 3038 5.876357 TCTTAAAGTTAGGCTGGTCACAAT 58.124 37.500 0.00 0.00 0.00 2.71
1579 3039 5.705441 TCTTAAAGTTAGGCTGGTCACAATG 59.295 40.000 0.00 0.00 0.00 2.82
1580 3040 2.496899 AGTTAGGCTGGTCACAATGG 57.503 50.000 0.00 0.00 0.00 3.16
1581 3041 1.004745 AGTTAGGCTGGTCACAATGGG 59.995 52.381 0.00 0.00 0.00 4.00
1582 3042 0.323360 TTAGGCTGGTCACAATGGGC 60.323 55.000 0.00 0.00 0.00 5.36
1583 3043 1.496444 TAGGCTGGTCACAATGGGCA 61.496 55.000 0.00 0.00 0.00 5.36
1584 3044 1.907807 GGCTGGTCACAATGGGCAA 60.908 57.895 0.00 0.00 0.00 4.52
1585 3045 1.588082 GCTGGTCACAATGGGCAAG 59.412 57.895 0.00 0.00 0.00 4.01
1586 3046 0.895100 GCTGGTCACAATGGGCAAGA 60.895 55.000 0.00 0.00 0.00 3.02
1587 3047 1.619654 CTGGTCACAATGGGCAAGAA 58.380 50.000 0.00 0.00 0.00 2.52
1588 3048 1.270550 CTGGTCACAATGGGCAAGAAC 59.729 52.381 0.00 0.00 0.00 3.01
1589 3049 1.327303 GGTCACAATGGGCAAGAACA 58.673 50.000 0.00 0.00 0.00 3.18
1590 3050 1.895131 GGTCACAATGGGCAAGAACAT 59.105 47.619 0.00 0.00 0.00 2.71
1591 3051 3.088532 GGTCACAATGGGCAAGAACATA 58.911 45.455 0.00 0.00 0.00 2.29
1592 3052 3.509575 GGTCACAATGGGCAAGAACATAA 59.490 43.478 0.00 0.00 0.00 1.90
1593 3053 4.380867 GGTCACAATGGGCAAGAACATAAG 60.381 45.833 0.00 0.00 0.00 1.73
1594 3054 3.193267 TCACAATGGGCAAGAACATAAGC 59.807 43.478 0.00 0.00 0.00 3.09
1595 3055 3.194116 CACAATGGGCAAGAACATAAGCT 59.806 43.478 0.00 0.00 0.00 3.74
1596 3056 4.398988 CACAATGGGCAAGAACATAAGCTA 59.601 41.667 0.00 0.00 0.00 3.32
1597 3057 4.641989 ACAATGGGCAAGAACATAAGCTAG 59.358 41.667 0.00 0.00 0.00 3.42
1598 3058 4.510167 ATGGGCAAGAACATAAGCTAGT 57.490 40.909 0.00 0.00 0.00 2.57
1599 3059 5.630415 ATGGGCAAGAACATAAGCTAGTA 57.370 39.130 0.00 0.00 0.00 1.82
1600 3060 5.429681 TGGGCAAGAACATAAGCTAGTAA 57.570 39.130 0.00 0.00 0.00 2.24
1601 3061 5.183228 TGGGCAAGAACATAAGCTAGTAAC 58.817 41.667 0.00 0.00 0.00 2.50
1602 3062 5.045869 TGGGCAAGAACATAAGCTAGTAACT 60.046 40.000 0.00 0.00 0.00 2.24
1603 3063 5.880887 GGGCAAGAACATAAGCTAGTAACTT 59.119 40.000 0.00 0.00 0.00 2.66
1604 3064 7.046033 GGGCAAGAACATAAGCTAGTAACTTA 58.954 38.462 0.00 0.00 34.29 2.24
1605 3065 7.011202 GGGCAAGAACATAAGCTAGTAACTTAC 59.989 40.741 0.00 0.00 32.67 2.34
1606 3066 7.548075 GGCAAGAACATAAGCTAGTAACTTACA 59.452 37.037 1.79 0.00 32.67 2.41
1607 3067 8.381387 GCAAGAACATAAGCTAGTAACTTACAC 58.619 37.037 1.79 0.00 32.67 2.90
1608 3068 9.419297 CAAGAACATAAGCTAGTAACTTACACA 57.581 33.333 1.79 0.00 32.67 3.72
1609 3069 8.983307 AGAACATAAGCTAGTAACTTACACAC 57.017 34.615 1.79 0.00 32.67 3.82
1610 3070 8.804204 AGAACATAAGCTAGTAACTTACACACT 58.196 33.333 1.79 0.00 32.67 3.55
1611 3071 9.420551 GAACATAAGCTAGTAACTTACACACTT 57.579 33.333 1.79 4.31 32.67 3.16
1612 3072 9.774413 AACATAAGCTAGTAACTTACACACTTT 57.226 29.630 1.79 0.00 32.67 2.66
1613 3073 9.420551 ACATAAGCTAGTAACTTACACACTTTC 57.579 33.333 1.79 0.00 32.67 2.62
1614 3074 8.870879 CATAAGCTAGTAACTTACACACTTTCC 58.129 37.037 1.79 0.00 32.67 3.13
1615 3075 6.667558 AGCTAGTAACTTACACACTTTCCT 57.332 37.500 1.79 0.00 0.00 3.36
1616 3076 7.771927 AGCTAGTAACTTACACACTTTCCTA 57.228 36.000 1.79 0.00 0.00 2.94
1617 3077 7.828712 AGCTAGTAACTTACACACTTTCCTAG 58.171 38.462 1.79 0.00 0.00 3.02
1618 3078 7.668886 AGCTAGTAACTTACACACTTTCCTAGA 59.331 37.037 1.79 0.00 0.00 2.43
1619 3079 8.468399 GCTAGTAACTTACACACTTTCCTAGAT 58.532 37.037 1.79 0.00 0.00 1.98
1667 3127 9.914131 TGTAAGAACATCTATATAGTGTCATGC 57.086 33.333 9.58 7.49 0.00 4.06
1668 3128 9.914131 GTAAGAACATCTATATAGTGTCATGCA 57.086 33.333 9.58 0.00 0.00 3.96
1670 3130 8.824159 AGAACATCTATATAGTGTCATGCAAC 57.176 34.615 9.58 0.00 0.00 4.17
1671 3131 7.596621 AGAACATCTATATAGTGTCATGCAACG 59.403 37.037 9.58 0.00 0.00 4.10
1672 3132 6.981722 ACATCTATATAGTGTCATGCAACGA 58.018 36.000 9.58 0.00 0.00 3.85
1673 3133 7.606349 ACATCTATATAGTGTCATGCAACGAT 58.394 34.615 9.58 0.00 0.00 3.73
1674 3134 7.543520 ACATCTATATAGTGTCATGCAACGATG 59.456 37.037 9.58 4.42 0.00 3.84
1675 3135 6.981722 TCTATATAGTGTCATGCAACGATGT 58.018 36.000 9.58 0.00 0.00 3.06
1676 3136 8.106247 TCTATATAGTGTCATGCAACGATGTA 57.894 34.615 9.58 0.00 0.00 2.29
1677 3137 8.739972 TCTATATAGTGTCATGCAACGATGTAT 58.260 33.333 9.58 0.00 31.41 2.29
1678 3138 9.358872 CTATATAGTGTCATGCAACGATGTATT 57.641 33.333 1.21 0.00 28.42 1.89
1679 3139 6.925610 ATAGTGTCATGCAACGATGTATTT 57.074 33.333 0.00 0.00 28.42 1.40
1680 3140 9.705290 ATATAGTGTCATGCAACGATGTATTTA 57.295 29.630 0.00 0.00 28.42 1.40
1681 3141 6.925610 AGTGTCATGCAACGATGTATTTAT 57.074 33.333 0.00 0.00 28.42 1.40
1682 3142 7.320443 AGTGTCATGCAACGATGTATTTATT 57.680 32.000 0.00 0.00 28.42 1.40
1683 3143 8.432110 AGTGTCATGCAACGATGTATTTATTA 57.568 30.769 0.00 0.00 28.42 0.98
1684 3144 8.551205 AGTGTCATGCAACGATGTATTTATTAG 58.449 33.333 0.00 0.00 28.42 1.73
1685 3145 7.798516 GTGTCATGCAACGATGTATTTATTAGG 59.201 37.037 0.00 0.00 28.42 2.69
1686 3146 7.497579 TGTCATGCAACGATGTATTTATTAGGT 59.502 33.333 0.00 0.00 28.42 3.08
1687 3147 8.342634 GTCATGCAACGATGTATTTATTAGGTT 58.657 33.333 0.00 0.00 28.42 3.50
1688 3148 9.549078 TCATGCAACGATGTATTTATTAGGTTA 57.451 29.630 0.00 0.00 28.42 2.85
1724 3184 5.821516 TTTTAAGTGTGTGATGTTTCGGT 57.178 34.783 0.00 0.00 0.00 4.69
1725 3185 6.922247 TTTTAAGTGTGTGATGTTTCGGTA 57.078 33.333 0.00 0.00 0.00 4.02
1726 3186 6.922247 TTTAAGTGTGTGATGTTTCGGTAA 57.078 33.333 0.00 0.00 0.00 2.85
1727 3187 4.806342 AAGTGTGTGATGTTTCGGTAAC 57.194 40.909 0.00 0.00 37.26 2.50
1728 3188 4.067972 AGTGTGTGATGTTTCGGTAACT 57.932 40.909 0.00 0.00 37.64 2.24
1729 3189 4.448210 AGTGTGTGATGTTTCGGTAACTT 58.552 39.130 0.00 0.00 37.64 2.66
1730 3190 5.603596 AGTGTGTGATGTTTCGGTAACTTA 58.396 37.500 0.00 0.00 37.64 2.24
1731 3191 5.694910 AGTGTGTGATGTTTCGGTAACTTAG 59.305 40.000 0.00 0.00 37.64 2.18
1732 3192 4.449743 TGTGTGATGTTTCGGTAACTTAGC 59.550 41.667 0.00 0.00 37.64 3.09
1733 3193 4.689345 GTGTGATGTTTCGGTAACTTAGCT 59.311 41.667 0.00 0.00 37.64 3.32
1734 3194 5.865552 GTGTGATGTTTCGGTAACTTAGCTA 59.134 40.000 0.00 0.00 37.64 3.32
1735 3195 6.034683 GTGTGATGTTTCGGTAACTTAGCTAG 59.965 42.308 0.00 0.00 37.64 3.42
1736 3196 6.098017 GTGATGTTTCGGTAACTTAGCTAGT 58.902 40.000 0.00 0.00 39.32 2.57
1738 3198 7.756722 GTGATGTTTCGGTAACTTAGCTAGTTA 59.243 37.037 10.09 10.09 45.22 2.24
1747 3207 4.884668 ACTTAGCTAGTTACCACAAGCA 57.115 40.909 0.00 0.00 37.44 3.91
1748 3208 4.566987 ACTTAGCTAGTTACCACAAGCAC 58.433 43.478 0.00 0.00 37.44 4.40
1749 3209 2.474410 AGCTAGTTACCACAAGCACC 57.526 50.000 0.00 0.00 37.44 5.01
1750 3210 1.978580 AGCTAGTTACCACAAGCACCT 59.021 47.619 0.00 0.00 37.44 4.00
1751 3211 2.028020 AGCTAGTTACCACAAGCACCTC 60.028 50.000 0.00 0.00 37.44 3.85
1752 3212 2.028020 GCTAGTTACCACAAGCACCTCT 60.028 50.000 0.00 0.00 35.05 3.69
1753 3213 2.841442 AGTTACCACAAGCACCTCTC 57.159 50.000 0.00 0.00 0.00 3.20
1754 3214 2.330216 AGTTACCACAAGCACCTCTCT 58.670 47.619 0.00 0.00 0.00 3.10
1755 3215 2.300437 AGTTACCACAAGCACCTCTCTC 59.700 50.000 0.00 0.00 0.00 3.20
1756 3216 2.300437 GTTACCACAAGCACCTCTCTCT 59.700 50.000 0.00 0.00 0.00 3.10
1757 3217 1.428869 ACCACAAGCACCTCTCTCTT 58.571 50.000 0.00 0.00 0.00 2.85
1758 3218 1.346068 ACCACAAGCACCTCTCTCTTC 59.654 52.381 0.00 0.00 0.00 2.87
1759 3219 1.345741 CCACAAGCACCTCTCTCTTCA 59.654 52.381 0.00 0.00 0.00 3.02
1760 3220 2.027377 CCACAAGCACCTCTCTCTTCAT 60.027 50.000 0.00 0.00 0.00 2.57
1761 3221 3.558746 CCACAAGCACCTCTCTCTTCATT 60.559 47.826 0.00 0.00 0.00 2.57
1762 3222 4.323028 CCACAAGCACCTCTCTCTTCATTA 60.323 45.833 0.00 0.00 0.00 1.90
1763 3223 5.240891 CACAAGCACCTCTCTCTTCATTAA 58.759 41.667 0.00 0.00 0.00 1.40
1764 3224 5.702670 CACAAGCACCTCTCTCTTCATTAAA 59.297 40.000 0.00 0.00 0.00 1.52
1765 3225 6.373774 CACAAGCACCTCTCTCTTCATTAAAT 59.626 38.462 0.00 0.00 0.00 1.40
1766 3226 7.550551 CACAAGCACCTCTCTCTTCATTAAATA 59.449 37.037 0.00 0.00 0.00 1.40
1767 3227 8.270744 ACAAGCACCTCTCTCTTCATTAAATAT 58.729 33.333 0.00 0.00 0.00 1.28
1768 3228 8.557864 CAAGCACCTCTCTCTTCATTAAATATG 58.442 37.037 0.00 0.00 0.00 1.78
1769 3229 7.800092 AGCACCTCTCTCTTCATTAAATATGT 58.200 34.615 0.00 0.00 0.00 2.29
1770 3230 7.714377 AGCACCTCTCTCTTCATTAAATATGTG 59.286 37.037 0.00 0.00 0.00 3.21
1771 3231 7.519649 GCACCTCTCTCTTCATTAAATATGTGC 60.520 40.741 0.00 0.00 35.67 4.57
1772 3232 6.995091 ACCTCTCTCTTCATTAAATATGTGCC 59.005 38.462 0.00 0.00 0.00 5.01
1773 3233 6.994496 CCTCTCTCTTCATTAAATATGTGCCA 59.006 38.462 0.00 0.00 0.00 4.92
1774 3234 7.041508 CCTCTCTCTTCATTAAATATGTGCCAC 60.042 40.741 0.00 0.00 0.00 5.01
1775 3235 7.337938 TCTCTCTTCATTAAATATGTGCCACA 58.662 34.615 0.00 0.00 0.00 4.17
1776 3236 7.994911 TCTCTCTTCATTAAATATGTGCCACAT 59.005 33.333 15.69 15.69 42.35 3.21
1777 3237 9.276590 CTCTCTTCATTAAATATGTGCCACATA 57.723 33.333 19.16 19.16 44.29 2.29
1778 3238 9.625747 TCTCTTCATTAAATATGTGCCACATAA 57.374 29.630 20.57 7.37 43.50 1.90
1779 3239 9.888878 CTCTTCATTAAATATGTGCCACATAAG 57.111 33.333 20.57 12.73 43.50 1.73
1780 3240 8.352201 TCTTCATTAAATATGTGCCACATAAGC 58.648 33.333 20.57 0.00 43.50 3.09
1781 3241 7.579761 TCATTAAATATGTGCCACATAAGCA 57.420 32.000 20.57 6.59 43.50 3.91
1782 3242 8.005192 TCATTAAATATGTGCCACATAAGCAA 57.995 30.769 20.57 14.07 43.50 3.91
1783 3243 8.473219 TCATTAAATATGTGCCACATAAGCAAA 58.527 29.630 20.57 12.83 43.50 3.68
1784 3244 8.757789 CATTAAATATGTGCCACATAAGCAAAG 58.242 33.333 20.57 8.50 43.50 2.77
1785 3245 5.920193 AATATGTGCCACATAAGCAAAGT 57.080 34.783 20.57 0.54 43.50 2.66
1786 3246 5.920193 ATATGTGCCACATAAGCAAAGTT 57.080 34.783 20.57 0.00 43.50 2.66
1787 3247 7.403312 AATATGTGCCACATAAGCAAAGTTA 57.597 32.000 20.57 0.00 43.50 2.24
1788 3248 5.920193 ATGTGCCACATAAGCAAAGTTAT 57.080 34.783 8.96 0.00 43.02 1.89
1789 3249 8.690203 ATATGTGCCACATAAGCAAAGTTATA 57.310 30.769 20.57 0.00 43.50 0.98
1790 3250 7.587037 ATGTGCCACATAAGCAAAGTTATAT 57.413 32.000 8.96 0.00 43.02 0.86
1791 3251 7.403312 TGTGCCACATAAGCAAAGTTATATT 57.597 32.000 0.00 0.00 43.02 1.28
1792 3252 8.512966 TGTGCCACATAAGCAAAGTTATATTA 57.487 30.769 0.00 0.00 43.02 0.98
1793 3253 8.620416 TGTGCCACATAAGCAAAGTTATATTAG 58.380 33.333 0.00 0.00 43.02 1.73
1794 3254 8.836413 GTGCCACATAAGCAAAGTTATATTAGA 58.164 33.333 0.00 0.00 43.02 2.10
1795 3255 9.056005 TGCCACATAAGCAAAGTTATATTAGAG 57.944 33.333 0.00 0.00 37.28 2.43
1796 3256 9.057089 GCCACATAAGCAAAGTTATATTAGAGT 57.943 33.333 0.00 0.00 0.00 3.24
1803 3263 9.672673 AAGCAAAGTTATATTAGAGTGTGTGAT 57.327 29.630 0.00 0.00 0.00 3.06
1804 3264 9.102757 AGCAAAGTTATATTAGAGTGTGTGATG 57.897 33.333 0.00 0.00 0.00 3.07
1805 3265 8.883731 GCAAAGTTATATTAGAGTGTGTGATGT 58.116 33.333 0.00 0.00 0.00 3.06
1812 3272 6.859112 ATTAGAGTGTGTGATGTTACTCCT 57.141 37.500 0.00 0.00 40.21 3.69
1813 3273 7.956328 ATTAGAGTGTGTGATGTTACTCCTA 57.044 36.000 0.00 0.00 40.21 2.94
1814 3274 7.770366 TTAGAGTGTGTGATGTTACTCCTAA 57.230 36.000 0.00 0.00 40.21 2.69
1815 3275 6.274157 AGAGTGTGTGATGTTACTCCTAAG 57.726 41.667 0.00 0.00 40.21 2.18
1816 3276 5.775701 AGAGTGTGTGATGTTACTCCTAAGT 59.224 40.000 0.00 0.00 40.21 2.24
1817 3277 6.267928 AGAGTGTGTGATGTTACTCCTAAGTT 59.732 38.462 0.00 0.00 40.21 2.66
1818 3278 6.456501 AGTGTGTGATGTTACTCCTAAGTTC 58.543 40.000 0.00 0.00 36.92 3.01
1819 3279 5.638234 GTGTGTGATGTTACTCCTAAGTTCC 59.362 44.000 0.00 0.00 36.92 3.62
1820 3280 5.542635 TGTGTGATGTTACTCCTAAGTTCCT 59.457 40.000 0.00 0.00 36.92 3.36
1821 3281 6.100668 GTGTGATGTTACTCCTAAGTTCCTC 58.899 44.000 0.00 0.00 36.92 3.71
1822 3282 5.187186 TGTGATGTTACTCCTAAGTTCCTCC 59.813 44.000 0.00 0.00 36.92 4.30
1823 3283 4.715297 TGATGTTACTCCTAAGTTCCTCCC 59.285 45.833 0.00 0.00 36.92 4.30
1824 3284 3.447950 TGTTACTCCTAAGTTCCTCCCC 58.552 50.000 0.00 0.00 36.92 4.81
1825 3285 3.181404 TGTTACTCCTAAGTTCCTCCCCA 60.181 47.826 0.00 0.00 36.92 4.96
1826 3286 2.972153 ACTCCTAAGTTCCTCCCCAT 57.028 50.000 0.00 0.00 28.74 4.00
1827 3287 3.222394 ACTCCTAAGTTCCTCCCCATT 57.778 47.619 0.00 0.00 28.74 3.16
1828 3288 2.846827 ACTCCTAAGTTCCTCCCCATTG 59.153 50.000 0.00 0.00 28.74 2.82
1829 3289 2.846827 CTCCTAAGTTCCTCCCCATTGT 59.153 50.000 0.00 0.00 0.00 2.71
1830 3290 2.576191 TCCTAAGTTCCTCCCCATTGTG 59.424 50.000 0.00 0.00 0.00 3.33
1831 3291 2.576191 CCTAAGTTCCTCCCCATTGTGA 59.424 50.000 0.00 0.00 0.00 3.58
1832 3292 2.586648 AAGTTCCTCCCCATTGTGAC 57.413 50.000 0.00 0.00 0.00 3.67
1833 3293 0.698818 AGTTCCTCCCCATTGTGACC 59.301 55.000 0.00 0.00 0.00 4.02
1834 3294 0.404040 GTTCCTCCCCATTGTGACCA 59.596 55.000 0.00 0.00 0.00 4.02
1835 3295 0.698238 TTCCTCCCCATTGTGACCAG 59.302 55.000 0.00 0.00 0.00 4.00
1836 3296 1.379044 CCTCCCCATTGTGACCAGC 60.379 63.158 0.00 0.00 0.00 4.85
1837 3297 1.379044 CTCCCCATTGTGACCAGCC 60.379 63.158 0.00 0.00 0.00 4.85
1838 3298 1.852157 TCCCCATTGTGACCAGCCT 60.852 57.895 0.00 0.00 0.00 4.58
1839 3299 1.077265 CCCCATTGTGACCAGCCTT 59.923 57.895 0.00 0.00 0.00 4.35
1840 3300 0.331278 CCCCATTGTGACCAGCCTTA 59.669 55.000 0.00 0.00 0.00 2.69
1841 3301 1.683011 CCCCATTGTGACCAGCCTTAG 60.683 57.143 0.00 0.00 0.00 2.18
1842 3302 1.281867 CCCATTGTGACCAGCCTTAGA 59.718 52.381 0.00 0.00 0.00 2.10
1843 3303 2.092212 CCCATTGTGACCAGCCTTAGAT 60.092 50.000 0.00 0.00 0.00 1.98
1844 3304 3.209410 CCATTGTGACCAGCCTTAGATC 58.791 50.000 0.00 0.00 0.00 2.75
1845 3305 3.370846 CCATTGTGACCAGCCTTAGATCA 60.371 47.826 0.00 0.00 0.00 2.92
1846 3306 4.458397 CATTGTGACCAGCCTTAGATCAT 58.542 43.478 0.00 0.00 0.00 2.45
1847 3307 3.827008 TGTGACCAGCCTTAGATCATC 57.173 47.619 0.00 0.00 0.00 2.92
1878 3338 1.087501 GTTCAAGTCTGGAATCGGCC 58.912 55.000 0.00 0.00 0.00 6.13
1886 3346 2.230508 GTCTGGAATCGGCCGTGATATA 59.769 50.000 27.15 4.32 0.00 0.86
1887 3347 3.096852 TCTGGAATCGGCCGTGATATAT 58.903 45.455 27.15 7.04 0.00 0.86
1888 3348 4.097437 GTCTGGAATCGGCCGTGATATATA 59.903 45.833 27.15 2.48 0.00 0.86
1889 3349 4.097437 TCTGGAATCGGCCGTGATATATAC 59.903 45.833 27.15 7.41 0.00 1.47
1890 3350 4.021229 TGGAATCGGCCGTGATATATACT 58.979 43.478 27.15 0.00 0.00 2.12
1973 3445 4.023980 CAGGTTCTACTGGGATGTAGTGA 58.976 47.826 0.00 0.00 40.39 3.41
1974 3446 4.098654 CAGGTTCTACTGGGATGTAGTGAG 59.901 50.000 0.00 0.00 40.39 3.51
1975 3447 4.024670 GGTTCTACTGGGATGTAGTGAGT 58.975 47.826 0.00 0.00 40.39 3.41
1976 3448 4.142138 GGTTCTACTGGGATGTAGTGAGTG 60.142 50.000 0.00 0.00 40.39 3.51
2105 3594 1.370437 CTGTCTCAGCTGTGGCAGT 59.630 57.895 32.23 0.00 41.70 4.40
2106 3595 0.669932 CTGTCTCAGCTGTGGCAGTC 60.670 60.000 32.23 14.27 41.70 3.51
2107 3596 1.375268 GTCTCAGCTGTGGCAGTCC 60.375 63.158 15.19 0.00 41.70 3.85
2108 3597 1.838396 TCTCAGCTGTGGCAGTCCA 60.838 57.895 14.67 0.00 41.70 4.02
2123 3612 1.001020 TCCATGCGTTCCATTGGCT 60.001 52.632 0.00 0.00 29.71 4.75
2232 3721 1.223187 TGATCGAGCACGCGTATCTA 58.777 50.000 13.44 5.83 39.58 1.98
2233 3722 1.600485 TGATCGAGCACGCGTATCTAA 59.400 47.619 13.44 4.81 39.58 2.10
2234 3723 2.032426 TGATCGAGCACGCGTATCTAAA 59.968 45.455 13.44 4.28 39.58 1.85
2235 3724 1.818850 TCGAGCACGCGTATCTAAAC 58.181 50.000 13.44 0.00 39.58 2.01
2236 3725 0.493146 CGAGCACGCGTATCTAAACG 59.507 55.000 13.44 8.52 45.58 3.60
2250 3739 8.967552 CGTATCTAAACGCTCCTATATTTCTT 57.032 34.615 0.00 0.00 35.87 2.52
2251 3740 9.408069 CGTATCTAAACGCTCCTATATTTCTTT 57.592 33.333 0.00 0.00 35.87 2.52
2255 3744 9.745880 TCTAAACGCTCCTATATTTCTTTACAG 57.254 33.333 0.00 0.00 0.00 2.74
2256 3745 6.846325 AACGCTCCTATATTTCTTTACAGC 57.154 37.500 0.00 0.00 0.00 4.40
2257 3746 5.502214 CGCTCCTATATTTCTTTACAGCG 57.498 43.478 0.00 0.00 40.98 5.18
2258 3747 4.386049 CGCTCCTATATTTCTTTACAGCGG 59.614 45.833 0.00 0.00 42.64 5.52
2259 3748 5.539048 GCTCCTATATTTCTTTACAGCGGA 58.461 41.667 0.00 0.00 0.00 5.54
2260 3749 5.989777 GCTCCTATATTTCTTTACAGCGGAA 59.010 40.000 0.00 0.00 0.00 4.30
2261 3750 6.146347 GCTCCTATATTTCTTTACAGCGGAAG 59.854 42.308 0.00 0.00 0.00 3.46
2262 3751 7.120923 TCCTATATTTCTTTACAGCGGAAGT 57.879 36.000 0.00 0.00 0.00 3.01
2263 3752 8.241497 TCCTATATTTCTTTACAGCGGAAGTA 57.759 34.615 0.00 0.00 0.00 2.24
2264 3753 8.867097 TCCTATATTTCTTTACAGCGGAAGTAT 58.133 33.333 0.00 0.00 0.00 2.12
2265 3754 9.141400 CCTATATTTCTTTACAGCGGAAGTATC 57.859 37.037 0.00 0.00 0.00 2.24
2266 3755 9.915629 CTATATTTCTTTACAGCGGAAGTATCT 57.084 33.333 0.00 0.00 0.00 1.98
2267 3756 8.819643 ATATTTCTTTACAGCGGAAGTATCTC 57.180 34.615 0.00 0.00 0.00 2.75
2268 3757 5.916661 TTCTTTACAGCGGAAGTATCTCT 57.083 39.130 0.00 0.00 0.00 3.10
2269 3758 5.916661 TCTTTACAGCGGAAGTATCTCTT 57.083 39.130 0.00 0.00 39.32 2.85
2270 3759 6.282199 TCTTTACAGCGGAAGTATCTCTTT 57.718 37.500 0.00 0.00 36.40 2.52
2271 3760 6.698380 TCTTTACAGCGGAAGTATCTCTTTT 58.302 36.000 0.00 0.00 36.40 2.27
2272 3761 7.159372 TCTTTACAGCGGAAGTATCTCTTTTT 58.841 34.615 0.00 0.00 36.40 1.94
2298 3787 4.522722 TGGAAACAAAGACGTTTTGGTT 57.477 36.364 19.44 19.44 41.51 3.67
2299 3788 4.884247 TGGAAACAAAGACGTTTTGGTTT 58.116 34.783 20.80 20.80 39.20 3.27
2300 3789 4.924462 TGGAAACAAAGACGTTTTGGTTTC 59.076 37.500 30.13 30.13 39.20 2.78
2301 3790 5.165676 GGAAACAAAGACGTTTTGGTTTCT 58.834 37.500 33.40 14.62 39.20 2.52
2302 3791 5.636121 GGAAACAAAGACGTTTTGGTTTCTT 59.364 36.000 33.40 14.04 39.20 2.52
2303 3792 6.146510 GGAAACAAAGACGTTTTGGTTTCTTT 59.853 34.615 33.40 20.25 39.20 2.52
2304 3793 7.307514 GGAAACAAAGACGTTTTGGTTTCTTTT 60.308 33.333 33.40 19.79 39.20 2.27
2305 3794 7.485418 AACAAAGACGTTTTGGTTTCTTTTT 57.515 28.000 19.92 2.82 36.40 1.94
2306 3795 8.590719 AACAAAGACGTTTTGGTTTCTTTTTA 57.409 26.923 19.92 0.00 36.40 1.52
2307 3796 8.234887 ACAAAGACGTTTTGGTTTCTTTTTAG 57.765 30.769 19.92 3.63 36.40 1.85
2308 3797 8.083462 ACAAAGACGTTTTGGTTTCTTTTTAGA 58.917 29.630 19.92 0.00 36.40 2.10
2309 3798 8.917655 CAAAGACGTTTTGGTTTCTTTTTAGAA 58.082 29.630 12.51 0.00 36.40 2.10
2310 3799 9.478768 AAAGACGTTTTGGTTTCTTTTTAGAAA 57.521 25.926 0.00 0.00 35.26 2.52
2319 3808 4.561735 TTCTTTTTAGAAACACCGGCTG 57.438 40.909 0.00 1.20 0.00 4.85
2320 3809 2.292292 TCTTTTTAGAAACACCGGCTGC 59.708 45.455 0.00 0.00 0.00 5.25
2321 3810 1.681538 TTTTAGAAACACCGGCTGCA 58.318 45.000 0.00 0.00 0.00 4.41
2322 3811 1.681538 TTTAGAAACACCGGCTGCAA 58.318 45.000 0.00 0.00 0.00 4.08
2323 3812 0.948678 TTAGAAACACCGGCTGCAAC 59.051 50.000 0.00 0.00 0.00 4.17
2324 3813 0.887387 TAGAAACACCGGCTGCAACC 60.887 55.000 0.00 0.00 0.00 3.77
2325 3814 2.123897 AAACACCGGCTGCAACCT 60.124 55.556 0.00 0.00 0.00 3.50
2326 3815 0.887387 GAAACACCGGCTGCAACCTA 60.887 55.000 0.00 0.00 0.00 3.08
2327 3816 0.251165 AAACACCGGCTGCAACCTAT 60.251 50.000 0.00 0.00 0.00 2.57
2328 3817 0.960364 AACACCGGCTGCAACCTATG 60.960 55.000 0.00 4.86 0.00 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
490 492 6.222389 TGGTTTGATTGCAATCCAGTTTTAG 58.778 36.000 31.35 0.00 44.76 1.85
649 2003 1.565759 TGACCAAAGCTAGGGCATGAT 59.434 47.619 9.53 0.00 39.89 2.45
683 2037 1.386550 GTGCCCCAACTAACCCCAT 59.613 57.895 0.00 0.00 0.00 4.00
727 2081 7.799914 CGCGTTGTTATAATAAAAGGGATAACC 59.200 37.037 0.00 0.00 35.02 2.85
728 2082 8.337532 ACGCGTTGTTATAATAAAAGGGATAAC 58.662 33.333 5.58 0.00 35.99 1.89
738 2092 3.185330 TGGCGACGCGTTGTTATAATAA 58.815 40.909 26.48 2.47 0.00 1.40
739 2093 2.807044 TGGCGACGCGTTGTTATAATA 58.193 42.857 26.48 4.21 0.00 0.98
740 2094 1.642728 TGGCGACGCGTTGTTATAAT 58.357 45.000 26.48 0.00 0.00 1.28
814 2168 1.617839 AAGGCAGGGAGGGAGGAAG 60.618 63.158 0.00 0.00 0.00 3.46
837 2191 4.101448 AGGGTGAGGTGCGATGGC 62.101 66.667 0.00 0.00 40.52 4.40
914 2303 2.588314 GCTGAGCAGAGCGGGATG 60.588 66.667 0.00 0.00 0.00 3.51
915 2304 2.763292 AGCTGAGCAGAGCGGGAT 60.763 61.111 7.39 0.00 44.24 3.85
916 2305 2.558380 TAGAGCTGAGCAGAGCGGGA 62.558 60.000 7.39 0.00 44.24 5.14
917 2306 2.074230 CTAGAGCTGAGCAGAGCGGG 62.074 65.000 7.39 0.00 44.24 6.13
919 2308 0.248580 CACTAGAGCTGAGCAGAGCG 60.249 60.000 7.39 0.00 44.24 5.03
936 2325 2.076863 CGGTGGATGGAGAGAAAACAC 58.923 52.381 0.00 0.00 0.00 3.32
939 2328 2.159099 CGATCGGTGGATGGAGAGAAAA 60.159 50.000 7.38 0.00 31.51 2.29
942 2331 0.182775 TCGATCGGTGGATGGAGAGA 59.817 55.000 16.41 0.00 33.16 3.10
984 2376 1.200483 CCATGGTCGTCGATCTTTCG 58.800 55.000 7.10 0.00 46.87 3.46
986 2378 0.806102 CGCCATGGTCGTCGATCTTT 60.806 55.000 14.67 0.00 0.00 2.52
987 2379 1.226974 CGCCATGGTCGTCGATCTT 60.227 57.895 14.67 0.00 0.00 2.40
988 2380 2.413351 CGCCATGGTCGTCGATCT 59.587 61.111 14.67 0.00 0.00 2.75
989 2381 2.658593 CCGCCATGGTCGTCGATC 60.659 66.667 21.61 0.00 0.00 3.69
1090 2482 1.706287 GGAAAGAATCTGGCGCCGAC 61.706 60.000 23.90 10.83 0.00 4.79
1096 2488 3.944650 GGAGAAAGAGGAAAGAATCTGGC 59.055 47.826 0.00 0.00 0.00 4.85
1118 2510 0.320697 AAAGGGAAGACGAACGAGGG 59.679 55.000 0.14 0.00 0.00 4.30
1120 2512 2.731976 CAGAAAAGGGAAGACGAACGAG 59.268 50.000 0.14 0.00 0.00 4.18
1123 2515 1.535896 GCCAGAAAAGGGAAGACGAAC 59.464 52.381 0.00 0.00 0.00 3.95
1180 2576 9.376075 GAATTCCATCCATATACTATGTCACTG 57.624 37.037 0.00 0.00 0.00 3.66
1183 2579 9.325248 TCAGAATTCCATCCATATACTATGTCA 57.675 33.333 0.65 0.00 0.00 3.58
1236 2658 0.510359 CAGAACTCGTGCTGCAAGAC 59.490 55.000 14.20 5.46 34.07 3.01
1330 2752 1.068250 GGGACGGCTTGCTAGCTAG 59.932 63.158 20.17 20.17 46.90 3.42
1331 2753 1.261938 TTGGGACGGCTTGCTAGCTA 61.262 55.000 19.45 7.59 46.90 3.32
1357 2779 4.335315 TCATCCTGAAAATATTGTGTCGCC 59.665 41.667 0.00 0.00 0.00 5.54
1389 2817 1.208293 GCAAGGAGGGACTAGACCAAG 59.792 57.143 13.36 0.00 41.55 3.61
1390 2818 1.203313 AGCAAGGAGGGACTAGACCAA 60.203 52.381 13.36 0.00 41.55 3.67
1391 2819 0.413832 AGCAAGGAGGGACTAGACCA 59.586 55.000 13.36 0.00 41.55 4.02
1392 2820 1.208293 CAAGCAAGGAGGGACTAGACC 59.792 57.143 2.23 2.23 41.55 3.85
1422 2862 6.470877 TCAACGCACACAGAAAAGAATTAAAC 59.529 34.615 0.00 0.00 0.00 2.01
1436 2876 0.948141 TCGCATCATCAACGCACACA 60.948 50.000 0.00 0.00 0.00 3.72
1463 2903 3.039588 CGGTCCACGGAAACCACG 61.040 66.667 3.71 0.00 39.42 4.94
1473 2913 0.320771 ATGCTCTTCACACGGTCCAC 60.321 55.000 0.00 0.00 0.00 4.02
1556 3016 5.106157 CCATTGTGACCAGCCTAACTTTAAG 60.106 44.000 0.00 0.00 0.00 1.85
1567 3027 0.895100 TCTTGCCCATTGTGACCAGC 60.895 55.000 0.00 0.00 0.00 4.85
1568 3028 1.270550 GTTCTTGCCCATTGTGACCAG 59.729 52.381 0.00 0.00 0.00 4.00
1570 3030 1.327303 TGTTCTTGCCCATTGTGACC 58.673 50.000 0.00 0.00 0.00 4.02
1571 3031 4.737054 CTTATGTTCTTGCCCATTGTGAC 58.263 43.478 0.00 0.00 0.00 3.67
1572 3032 3.193267 GCTTATGTTCTTGCCCATTGTGA 59.807 43.478 0.00 0.00 0.00 3.58
1573 3033 3.194116 AGCTTATGTTCTTGCCCATTGTG 59.806 43.478 0.00 0.00 0.00 3.33
1574 3034 3.434309 AGCTTATGTTCTTGCCCATTGT 58.566 40.909 0.00 0.00 0.00 2.71
1575 3035 4.641989 ACTAGCTTATGTTCTTGCCCATTG 59.358 41.667 0.00 0.00 0.00 2.82
1576 3036 4.860022 ACTAGCTTATGTTCTTGCCCATT 58.140 39.130 0.00 0.00 0.00 3.16
1577 3037 4.510167 ACTAGCTTATGTTCTTGCCCAT 57.490 40.909 0.00 0.00 0.00 4.00
1578 3038 5.045869 AGTTACTAGCTTATGTTCTTGCCCA 60.046 40.000 0.00 0.00 0.00 5.36
1579 3039 5.429130 AGTTACTAGCTTATGTTCTTGCCC 58.571 41.667 0.00 0.00 0.00 5.36
1580 3040 6.986904 AAGTTACTAGCTTATGTTCTTGCC 57.013 37.500 0.00 0.00 0.00 4.52
1581 3041 8.381387 GTGTAAGTTACTAGCTTATGTTCTTGC 58.619 37.037 14.00 3.08 32.01 4.01
1582 3042 9.419297 TGTGTAAGTTACTAGCTTATGTTCTTG 57.581 33.333 14.00 0.00 32.01 3.02
1583 3043 9.420551 GTGTGTAAGTTACTAGCTTATGTTCTT 57.579 33.333 14.00 1.42 32.01 2.52
1584 3044 8.804204 AGTGTGTAAGTTACTAGCTTATGTTCT 58.196 33.333 14.00 0.00 32.01 3.01
1585 3045 8.983307 AGTGTGTAAGTTACTAGCTTATGTTC 57.017 34.615 14.00 0.00 32.01 3.18
1586 3046 9.774413 AAAGTGTGTAAGTTACTAGCTTATGTT 57.226 29.630 14.00 0.00 32.01 2.71
1587 3047 9.420551 GAAAGTGTGTAAGTTACTAGCTTATGT 57.579 33.333 14.00 0.00 32.01 2.29
1588 3048 8.870879 GGAAAGTGTGTAAGTTACTAGCTTATG 58.129 37.037 14.00 0.00 32.01 1.90
1589 3049 8.813951 AGGAAAGTGTGTAAGTTACTAGCTTAT 58.186 33.333 14.00 6.54 32.01 1.73
1590 3050 8.186709 AGGAAAGTGTGTAAGTTACTAGCTTA 57.813 34.615 14.00 0.00 0.00 3.09
1591 3051 7.063934 AGGAAAGTGTGTAAGTTACTAGCTT 57.936 36.000 14.00 11.19 0.00 3.74
1592 3052 6.667558 AGGAAAGTGTGTAAGTTACTAGCT 57.332 37.500 14.00 6.35 0.00 3.32
1593 3053 7.824672 TCTAGGAAAGTGTGTAAGTTACTAGC 58.175 38.462 14.00 5.48 33.28 3.42
1641 3101 9.914131 GCATGACACTATATAGATGTTCTTACA 57.086 33.333 16.79 10.16 38.95 2.41
1642 3102 9.914131 TGCATGACACTATATAGATGTTCTTAC 57.086 33.333 16.79 5.74 0.00 2.34
1644 3104 9.265901 GTTGCATGACACTATATAGATGTTCTT 57.734 33.333 16.79 2.96 0.00 2.52
1645 3105 7.596621 CGTTGCATGACACTATATAGATGTTCT 59.403 37.037 16.79 6.03 0.00 3.01
1646 3106 7.595130 TCGTTGCATGACACTATATAGATGTTC 59.405 37.037 16.79 7.11 0.00 3.18
1647 3107 7.433680 TCGTTGCATGACACTATATAGATGTT 58.566 34.615 16.79 1.40 0.00 2.71
1648 3108 6.981722 TCGTTGCATGACACTATATAGATGT 58.018 36.000 16.79 15.20 0.00 3.06
1649 3109 7.543520 ACATCGTTGCATGACACTATATAGATG 59.456 37.037 16.79 12.42 36.35 2.90
1650 3110 7.606349 ACATCGTTGCATGACACTATATAGAT 58.394 34.615 16.79 3.99 0.00 1.98
1651 3111 6.981722 ACATCGTTGCATGACACTATATAGA 58.018 36.000 16.79 0.00 0.00 1.98
1652 3112 8.917415 ATACATCGTTGCATGACACTATATAG 57.083 34.615 8.27 8.27 0.00 1.31
1653 3113 9.705290 AAATACATCGTTGCATGACACTATATA 57.295 29.630 0.00 0.00 0.00 0.86
1654 3114 8.607441 AAATACATCGTTGCATGACACTATAT 57.393 30.769 0.00 0.00 0.00 0.86
1655 3115 9.705290 ATAAATACATCGTTGCATGACACTATA 57.295 29.630 0.00 0.00 0.00 1.31
1656 3116 6.925610 AAATACATCGTTGCATGACACTAT 57.074 33.333 0.00 0.00 0.00 2.12
1657 3117 8.432110 AATAAATACATCGTTGCATGACACTA 57.568 30.769 0.00 0.00 0.00 2.74
1658 3118 6.925610 ATAAATACATCGTTGCATGACACT 57.074 33.333 0.00 0.00 0.00 3.55
1659 3119 7.798516 CCTAATAAATACATCGTTGCATGACAC 59.201 37.037 0.00 0.00 0.00 3.67
1660 3120 7.497579 ACCTAATAAATACATCGTTGCATGACA 59.502 33.333 0.00 0.00 0.00 3.58
1661 3121 7.861630 ACCTAATAAATACATCGTTGCATGAC 58.138 34.615 0.00 0.00 0.00 3.06
1662 3122 8.445275 AACCTAATAAATACATCGTTGCATGA 57.555 30.769 0.00 0.00 0.00 3.07
1701 3161 6.197364 ACCGAAACATCACACACTTAAAAA 57.803 33.333 0.00 0.00 0.00 1.94
1702 3162 5.821516 ACCGAAACATCACACACTTAAAA 57.178 34.783 0.00 0.00 0.00 1.52
1703 3163 6.539464 AGTTACCGAAACATCACACACTTAAA 59.461 34.615 3.87 0.00 40.83 1.52
1704 3164 6.050432 AGTTACCGAAACATCACACACTTAA 58.950 36.000 3.87 0.00 40.83 1.85
1705 3165 5.603596 AGTTACCGAAACATCACACACTTA 58.396 37.500 3.87 0.00 40.83 2.24
1706 3166 4.448210 AGTTACCGAAACATCACACACTT 58.552 39.130 3.87 0.00 40.83 3.16
1707 3167 4.067972 AGTTACCGAAACATCACACACT 57.932 40.909 3.87 0.00 40.83 3.55
1708 3168 4.806342 AAGTTACCGAAACATCACACAC 57.194 40.909 3.87 0.00 40.83 3.82
1709 3169 4.449743 GCTAAGTTACCGAAACATCACACA 59.550 41.667 3.87 0.00 40.83 3.72
1710 3170 4.689345 AGCTAAGTTACCGAAACATCACAC 59.311 41.667 0.00 0.00 40.83 3.82
1711 3171 4.890088 AGCTAAGTTACCGAAACATCACA 58.110 39.130 0.00 0.00 40.83 3.58
1712 3172 6.098017 ACTAGCTAAGTTACCGAAACATCAC 58.902 40.000 0.00 0.00 40.83 3.06
1713 3173 6.276832 ACTAGCTAAGTTACCGAAACATCA 57.723 37.500 0.00 0.00 40.83 3.07
1732 3192 3.511934 AGAGAGGTGCTTGTGGTAACTAG 59.488 47.826 0.00 0.00 37.61 2.57
1733 3193 3.507411 AGAGAGGTGCTTGTGGTAACTA 58.493 45.455 0.00 0.00 37.61 2.24
1734 3194 2.300437 GAGAGAGGTGCTTGTGGTAACT 59.700 50.000 0.00 0.00 37.61 2.24
1735 3195 2.300437 AGAGAGAGGTGCTTGTGGTAAC 59.700 50.000 0.00 0.00 0.00 2.50
1736 3196 2.609747 AGAGAGAGGTGCTTGTGGTAA 58.390 47.619 0.00 0.00 0.00 2.85
1737 3197 2.310779 AGAGAGAGGTGCTTGTGGTA 57.689 50.000 0.00 0.00 0.00 3.25
1738 3198 1.346068 GAAGAGAGAGGTGCTTGTGGT 59.654 52.381 0.00 0.00 0.00 4.16
1739 3199 1.345741 TGAAGAGAGAGGTGCTTGTGG 59.654 52.381 0.00 0.00 0.00 4.17
1740 3200 2.827800 TGAAGAGAGAGGTGCTTGTG 57.172 50.000 0.00 0.00 0.00 3.33
1741 3201 5.489792 TTAATGAAGAGAGAGGTGCTTGT 57.510 39.130 0.00 0.00 0.00 3.16
1742 3202 6.998968 ATTTAATGAAGAGAGAGGTGCTTG 57.001 37.500 0.00 0.00 0.00 4.01
1743 3203 8.270744 ACATATTTAATGAAGAGAGAGGTGCTT 58.729 33.333 0.00 0.00 0.00 3.91
1744 3204 7.714377 CACATATTTAATGAAGAGAGAGGTGCT 59.286 37.037 0.00 0.00 0.00 4.40
1745 3205 7.519649 GCACATATTTAATGAAGAGAGAGGTGC 60.520 40.741 0.00 0.00 37.76 5.01
1746 3206 7.041508 GGCACATATTTAATGAAGAGAGAGGTG 60.042 40.741 0.00 0.00 0.00 4.00
1747 3207 6.995091 GGCACATATTTAATGAAGAGAGAGGT 59.005 38.462 0.00 0.00 0.00 3.85
1748 3208 6.994496 TGGCACATATTTAATGAAGAGAGAGG 59.006 38.462 0.00 0.00 0.00 3.69
1749 3209 7.496920 TGTGGCACATATTTAATGAAGAGAGAG 59.503 37.037 17.96 0.00 44.52 3.20
1750 3210 7.337938 TGTGGCACATATTTAATGAAGAGAGA 58.662 34.615 17.96 0.00 44.52 3.10
1751 3211 7.558161 TGTGGCACATATTTAATGAAGAGAG 57.442 36.000 17.96 0.00 44.52 3.20
1752 3212 9.625747 TTATGTGGCACATATTTAATGAAGAGA 57.374 29.630 33.89 16.11 44.52 3.10
1753 3213 9.888878 CTTATGTGGCACATATTTAATGAAGAG 57.111 33.333 33.89 22.09 44.52 2.85
1754 3214 8.352201 GCTTATGTGGCACATATTTAATGAAGA 58.648 33.333 33.89 17.83 44.52 2.87
1755 3215 8.136800 TGCTTATGTGGCACATATTTAATGAAG 58.863 33.333 33.89 27.40 44.52 3.02
1756 3216 8.005192 TGCTTATGTGGCACATATTTAATGAA 57.995 30.769 33.89 20.49 44.52 2.57
1757 3217 7.579761 TGCTTATGTGGCACATATTTAATGA 57.420 32.000 33.89 19.68 44.52 2.57
1758 3218 8.645730 TTTGCTTATGTGGCACATATTTAATG 57.354 30.769 33.89 20.34 44.52 1.90
1759 3219 8.477256 ACTTTGCTTATGTGGCACATATTTAAT 58.523 29.630 33.89 15.77 44.52 1.40
1760 3220 7.835822 ACTTTGCTTATGTGGCACATATTTAA 58.164 30.769 33.89 25.24 44.52 1.52
1761 3221 7.403312 ACTTTGCTTATGTGGCACATATTTA 57.597 32.000 33.89 21.55 44.52 1.40
1762 3222 6.284891 ACTTTGCTTATGTGGCACATATTT 57.715 33.333 33.89 17.52 44.52 1.40
1763 3223 5.920193 ACTTTGCTTATGTGGCACATATT 57.080 34.783 33.89 17.87 44.52 1.28
1764 3224 5.920193 AACTTTGCTTATGTGGCACATAT 57.080 34.783 33.89 18.57 44.52 1.78
1765 3225 8.690203 ATATAACTTTGCTTATGTGGCACATA 57.310 30.769 31.06 31.06 44.52 2.29
1766 3226 5.920193 ATAACTTTGCTTATGTGGCACAT 57.080 34.783 33.18 33.18 44.52 3.21
1767 3227 7.403312 AATATAACTTTGCTTATGTGGCACA 57.597 32.000 24.36 24.36 39.55 4.57
1768 3228 8.836413 TCTAATATAACTTTGCTTATGTGGCAC 58.164 33.333 11.55 11.55 39.55 5.01
1769 3229 8.972458 TCTAATATAACTTTGCTTATGTGGCA 57.028 30.769 0.00 0.00 37.97 4.92
1770 3230 9.057089 ACTCTAATATAACTTTGCTTATGTGGC 57.943 33.333 0.00 0.00 0.00 5.01
1777 3237 9.672673 ATCACACACTCTAATATAACTTTGCTT 57.327 29.630 0.00 0.00 0.00 3.91
1778 3238 9.102757 CATCACACACTCTAATATAACTTTGCT 57.897 33.333 0.00 0.00 0.00 3.91
1779 3239 8.883731 ACATCACACACTCTAATATAACTTTGC 58.116 33.333 0.00 0.00 0.00 3.68
1786 3246 9.642343 AGGAGTAACATCACACACTCTAATATA 57.358 33.333 0.00 0.00 37.99 0.86
1787 3247 8.540507 AGGAGTAACATCACACACTCTAATAT 57.459 34.615 0.00 0.00 37.99 1.28
1788 3248 7.956328 AGGAGTAACATCACACACTCTAATA 57.044 36.000 0.00 0.00 37.99 0.98
1789 3249 6.859112 AGGAGTAACATCACACACTCTAAT 57.141 37.500 0.00 0.00 37.99 1.73
1790 3250 7.450634 ACTTAGGAGTAACATCACACACTCTAA 59.549 37.037 0.00 0.00 37.99 2.10
1791 3251 6.946583 ACTTAGGAGTAACATCACACACTCTA 59.053 38.462 0.00 0.00 37.99 2.43
1792 3252 5.775701 ACTTAGGAGTAACATCACACACTCT 59.224 40.000 0.00 0.00 37.99 3.24
1793 3253 6.026947 ACTTAGGAGTAACATCACACACTC 57.973 41.667 0.00 0.00 37.32 3.51
1794 3254 6.420913 AACTTAGGAGTAACATCACACACT 57.579 37.500 0.00 0.00 34.21 3.55
1795 3255 5.638234 GGAACTTAGGAGTAACATCACACAC 59.362 44.000 0.00 0.00 34.21 3.82
1796 3256 5.542635 AGGAACTTAGGAGTAACATCACACA 59.457 40.000 0.00 0.00 34.21 3.72
1797 3257 6.038997 AGGAACTTAGGAGTAACATCACAC 57.961 41.667 0.00 0.00 34.21 3.82
1798 3258 5.187186 GGAGGAACTTAGGAGTAACATCACA 59.813 44.000 0.00 0.00 41.55 3.58
1799 3259 5.395435 GGGAGGAACTTAGGAGTAACATCAC 60.395 48.000 0.00 0.00 41.55 3.06
1800 3260 4.715297 GGGAGGAACTTAGGAGTAACATCA 59.285 45.833 0.00 0.00 41.55 3.07
1801 3261 4.101274 GGGGAGGAACTTAGGAGTAACATC 59.899 50.000 0.00 0.00 41.55 3.06
1802 3262 4.038633 GGGGAGGAACTTAGGAGTAACAT 58.961 47.826 0.00 0.00 41.55 2.71
1803 3263 3.181404 TGGGGAGGAACTTAGGAGTAACA 60.181 47.826 0.00 0.00 41.55 2.41
1804 3264 3.447950 TGGGGAGGAACTTAGGAGTAAC 58.552 50.000 0.00 0.00 41.55 2.50
1805 3265 3.858696 TGGGGAGGAACTTAGGAGTAA 57.141 47.619 0.00 0.00 41.55 2.24
1806 3266 4.037927 CAATGGGGAGGAACTTAGGAGTA 58.962 47.826 0.00 0.00 41.55 2.59
1807 3267 2.846827 CAATGGGGAGGAACTTAGGAGT 59.153 50.000 0.00 0.00 41.55 3.85
1808 3268 2.846827 ACAATGGGGAGGAACTTAGGAG 59.153 50.000 0.00 0.00 41.55 3.69
1809 3269 2.576191 CACAATGGGGAGGAACTTAGGA 59.424 50.000 0.00 0.00 41.55 2.94
1810 3270 2.576191 TCACAATGGGGAGGAACTTAGG 59.424 50.000 0.00 0.00 41.55 2.69
1811 3271 3.610911 GTCACAATGGGGAGGAACTTAG 58.389 50.000 0.00 0.00 41.55 2.18
1812 3272 2.307686 GGTCACAATGGGGAGGAACTTA 59.692 50.000 0.00 0.00 41.55 2.24
1813 3273 1.075536 GGTCACAATGGGGAGGAACTT 59.924 52.381 0.00 0.00 41.55 2.66
1815 3275 0.404040 TGGTCACAATGGGGAGGAAC 59.596 55.000 0.00 0.00 0.00 3.62
1816 3276 0.698238 CTGGTCACAATGGGGAGGAA 59.302 55.000 0.00 0.00 0.00 3.36
1817 3277 1.852157 GCTGGTCACAATGGGGAGGA 61.852 60.000 0.00 0.00 0.00 3.71
1818 3278 1.379044 GCTGGTCACAATGGGGAGG 60.379 63.158 0.00 0.00 0.00 4.30
1819 3279 1.379044 GGCTGGTCACAATGGGGAG 60.379 63.158 0.00 0.00 0.00 4.30
1820 3280 1.434513 AAGGCTGGTCACAATGGGGA 61.435 55.000 0.00 0.00 0.00 4.81
1821 3281 0.331278 TAAGGCTGGTCACAATGGGG 59.669 55.000 0.00 0.00 0.00 4.96
1822 3282 1.281867 TCTAAGGCTGGTCACAATGGG 59.718 52.381 0.00 0.00 0.00 4.00
1823 3283 2.787473 TCTAAGGCTGGTCACAATGG 57.213 50.000 0.00 0.00 0.00 3.16
1824 3284 3.877559 TGATCTAAGGCTGGTCACAATG 58.122 45.455 0.00 0.00 0.00 2.82
1825 3285 4.164796 TGATGATCTAAGGCTGGTCACAAT 59.835 41.667 0.00 0.00 0.00 2.71
1826 3286 3.519107 TGATGATCTAAGGCTGGTCACAA 59.481 43.478 0.00 0.00 0.00 3.33
1827 3287 3.106827 TGATGATCTAAGGCTGGTCACA 58.893 45.455 0.00 0.00 0.00 3.58
1828 3288 3.827008 TGATGATCTAAGGCTGGTCAC 57.173 47.619 0.00 0.00 0.00 3.67
1829 3289 4.711399 CAATGATGATCTAAGGCTGGTCA 58.289 43.478 0.00 0.00 0.00 4.02
1830 3290 3.501445 GCAATGATGATCTAAGGCTGGTC 59.499 47.826 0.00 0.00 0.00 4.02
1831 3291 3.484407 GCAATGATGATCTAAGGCTGGT 58.516 45.455 0.00 0.00 0.00 4.00
1832 3292 2.818432 GGCAATGATGATCTAAGGCTGG 59.182 50.000 0.00 0.00 0.00 4.85
1833 3293 3.752222 GAGGCAATGATGATCTAAGGCTG 59.248 47.826 10.97 0.00 0.00 4.85
1834 3294 3.244840 GGAGGCAATGATGATCTAAGGCT 60.245 47.826 7.19 7.19 0.00 4.58
1835 3295 3.080319 GGAGGCAATGATGATCTAAGGC 58.920 50.000 0.00 0.00 0.00 4.35
1836 3296 3.330110 AGGGAGGCAATGATGATCTAAGG 59.670 47.826 0.00 0.00 0.00 2.69
1837 3297 4.202440 ACAGGGAGGCAATGATGATCTAAG 60.202 45.833 0.00 0.00 0.00 2.18
1838 3298 3.718434 ACAGGGAGGCAATGATGATCTAA 59.282 43.478 0.00 0.00 0.00 2.10
1839 3299 3.321039 ACAGGGAGGCAATGATGATCTA 58.679 45.455 0.00 0.00 0.00 1.98
1840 3300 2.133520 ACAGGGAGGCAATGATGATCT 58.866 47.619 0.00 0.00 0.00 2.75
1841 3301 2.653234 ACAGGGAGGCAATGATGATC 57.347 50.000 0.00 0.00 0.00 2.92
1842 3302 2.242965 TGAACAGGGAGGCAATGATGAT 59.757 45.455 0.00 0.00 0.00 2.45
1843 3303 1.634973 TGAACAGGGAGGCAATGATGA 59.365 47.619 0.00 0.00 0.00 2.92
1844 3304 2.133281 TGAACAGGGAGGCAATGATG 57.867 50.000 0.00 0.00 0.00 3.07
1845 3305 2.042162 ACTTGAACAGGGAGGCAATGAT 59.958 45.455 0.00 0.00 0.00 2.45
1846 3306 1.425066 ACTTGAACAGGGAGGCAATGA 59.575 47.619 0.00 0.00 0.00 2.57
1847 3307 1.815003 GACTTGAACAGGGAGGCAATG 59.185 52.381 0.00 0.00 0.00 2.82
1878 3338 7.279536 ACCCGACTACATACAGTATATATCACG 59.720 40.741 0.00 0.00 30.93 4.35
1886 3346 5.889853 TGAGAAACCCGACTACATACAGTAT 59.110 40.000 0.00 0.00 30.93 2.12
1887 3347 5.255687 TGAGAAACCCGACTACATACAGTA 58.744 41.667 0.00 0.00 0.00 2.74
1888 3348 4.084287 TGAGAAACCCGACTACATACAGT 58.916 43.478 0.00 0.00 0.00 3.55
1889 3349 4.713824 TGAGAAACCCGACTACATACAG 57.286 45.455 0.00 0.00 0.00 2.74
1890 3350 5.670792 AATGAGAAACCCGACTACATACA 57.329 39.130 0.00 0.00 0.00 2.29
1973 3445 4.605640 ACCAAATTTGCATAACAGCACT 57.394 36.364 12.92 0.00 45.61 4.40
1974 3446 4.625311 GGTACCAAATTTGCATAACAGCAC 59.375 41.667 12.92 0.00 45.61 4.40
1975 3447 4.526262 AGGTACCAAATTTGCATAACAGCA 59.474 37.500 15.94 0.00 43.99 4.41
1976 3448 4.864247 CAGGTACCAAATTTGCATAACAGC 59.136 41.667 15.94 3.49 0.00 4.40
2027 3516 0.310543 TTGTTCCTCATGCAACACGC 59.689 50.000 0.00 0.00 42.89 5.34
2105 3594 1.001020 AGCCAATGGAACGCATGGA 60.001 52.632 2.05 0.00 34.82 3.41
2106 3595 1.140161 CAGCCAATGGAACGCATGG 59.860 57.895 2.05 0.00 36.00 3.66
2107 3596 4.798288 CAGCCAATGGAACGCATG 57.202 55.556 2.05 0.00 0.00 4.06
2123 3612 4.641645 CCACTTGACAGGCGGCCA 62.642 66.667 23.09 0.00 0.00 5.36
2198 3687 1.393539 CGATCATTTTCGACGCTTGGT 59.606 47.619 0.00 0.00 41.62 3.67
2200 3689 2.843542 GCTCGATCATTTTCGACGCTTG 60.844 50.000 0.00 0.00 42.81 4.01
2205 3694 1.589968 GCGTGCTCGATCATTTTCGAC 60.590 52.381 13.13 0.00 42.81 4.20
2232 3721 6.018994 CGCTGTAAAGAAATATAGGAGCGTTT 60.019 38.462 0.00 0.00 41.31 3.60
2233 3722 5.462398 CGCTGTAAAGAAATATAGGAGCGTT 59.538 40.000 0.00 0.00 41.31 4.84
2234 3723 4.982916 CGCTGTAAAGAAATATAGGAGCGT 59.017 41.667 0.00 0.00 41.31 5.07
2235 3724 4.386049 CCGCTGTAAAGAAATATAGGAGCG 59.614 45.833 0.00 0.00 44.77 5.03
2236 3725 5.539048 TCCGCTGTAAAGAAATATAGGAGC 58.461 41.667 0.00 0.00 0.00 4.70
2237 3726 7.210873 ACTTCCGCTGTAAAGAAATATAGGAG 58.789 38.462 0.00 0.00 0.00 3.69
2238 3727 7.120923 ACTTCCGCTGTAAAGAAATATAGGA 57.879 36.000 0.00 0.00 0.00 2.94
2239 3728 9.141400 GATACTTCCGCTGTAAAGAAATATAGG 57.859 37.037 0.00 0.00 0.00 2.57
2240 3729 9.915629 AGATACTTCCGCTGTAAAGAAATATAG 57.084 33.333 0.00 0.00 0.00 1.31
2241 3730 9.909644 GAGATACTTCCGCTGTAAAGAAATATA 57.090 33.333 0.00 0.00 0.00 0.86
2242 3731 8.643324 AGAGATACTTCCGCTGTAAAGAAATAT 58.357 33.333 0.00 0.00 0.00 1.28
2243 3732 8.008513 AGAGATACTTCCGCTGTAAAGAAATA 57.991 34.615 0.00 0.00 0.00 1.40
2244 3733 6.879400 AGAGATACTTCCGCTGTAAAGAAAT 58.121 36.000 0.00 0.00 0.00 2.17
2245 3734 6.282199 AGAGATACTTCCGCTGTAAAGAAA 57.718 37.500 0.00 0.00 0.00 2.52
2246 3735 5.916661 AGAGATACTTCCGCTGTAAAGAA 57.083 39.130 0.00 0.00 0.00 2.52
2247 3736 5.916661 AAGAGATACTTCCGCTGTAAAGA 57.083 39.130 0.00 0.00 32.91 2.52
2248 3737 6.969828 AAAAGAGATACTTCCGCTGTAAAG 57.030 37.500 0.00 0.00 37.93 1.85
2270 3759 7.307455 CCAAAACGTCTTTGTTTCCAAGAAAAA 60.307 33.333 16.53 0.00 41.01 1.94
2271 3760 6.146347 CCAAAACGTCTTTGTTTCCAAGAAAA 59.854 34.615 16.53 0.00 41.01 2.29
2272 3761 5.635700 CCAAAACGTCTTTGTTTCCAAGAAA 59.364 36.000 16.53 0.00 41.01 2.52
2273 3762 5.164954 CCAAAACGTCTTTGTTTCCAAGAA 58.835 37.500 16.53 0.00 41.01 2.52
2274 3763 4.218852 ACCAAAACGTCTTTGTTTCCAAGA 59.781 37.500 16.53 0.00 41.01 3.02
2275 3764 4.490743 ACCAAAACGTCTTTGTTTCCAAG 58.509 39.130 16.53 6.94 41.01 3.61
2276 3765 4.522722 ACCAAAACGTCTTTGTTTCCAA 57.477 36.364 16.53 0.00 41.01 3.53
2277 3766 4.522722 AACCAAAACGTCTTTGTTTCCA 57.477 36.364 16.53 0.00 41.01 3.53
2278 3767 5.165676 AGAAACCAAAACGTCTTTGTTTCC 58.834 37.500 21.23 9.04 41.01 3.13
2279 3768 6.699895 AAGAAACCAAAACGTCTTTGTTTC 57.300 33.333 18.64 18.64 41.01 2.78
2280 3769 7.485418 AAAAGAAACCAAAACGTCTTTGTTT 57.515 28.000 3.68 3.68 43.60 2.83
2281 3770 7.485418 AAAAAGAAACCAAAACGTCTTTGTT 57.515 28.000 16.53 4.36 39.60 2.83
2282 3771 8.083462 TCTAAAAAGAAACCAAAACGTCTTTGT 58.917 29.630 16.53 6.34 39.60 2.83
2283 3772 8.455598 TCTAAAAAGAAACCAAAACGTCTTTG 57.544 30.769 13.08 13.08 39.60 2.77
2284 3773 9.478768 TTTCTAAAAAGAAACCAAAACGTCTTT 57.521 25.926 0.00 0.00 41.02 2.52
2297 3786 4.735283 GCAGCCGGTGTTTCTAAAAAGAAA 60.735 41.667 1.90 0.00 35.67 2.52
2298 3787 3.243267 GCAGCCGGTGTTTCTAAAAAGAA 60.243 43.478 1.90 0.00 0.00 2.52
2299 3788 2.292292 GCAGCCGGTGTTTCTAAAAAGA 59.708 45.455 1.90 0.00 0.00 2.52
2300 3789 2.034053 TGCAGCCGGTGTTTCTAAAAAG 59.966 45.455 1.90 0.00 0.00 2.27
2301 3790 2.025155 TGCAGCCGGTGTTTCTAAAAA 58.975 42.857 1.90 0.00 0.00 1.94
2302 3791 1.681538 TGCAGCCGGTGTTTCTAAAA 58.318 45.000 1.90 0.00 0.00 1.52
2303 3792 1.335496 GTTGCAGCCGGTGTTTCTAAA 59.665 47.619 1.90 0.00 0.00 1.85
2304 3793 0.948678 GTTGCAGCCGGTGTTTCTAA 59.051 50.000 1.90 0.00 0.00 2.10
2305 3794 0.887387 GGTTGCAGCCGGTGTTTCTA 60.887 55.000 2.95 0.00 0.00 2.10
2306 3795 2.193536 GGTTGCAGCCGGTGTTTCT 61.194 57.895 2.95 0.00 0.00 2.52
2307 3796 0.887387 TAGGTTGCAGCCGGTGTTTC 60.887 55.000 14.49 0.00 0.00 2.78
2308 3797 0.251165 ATAGGTTGCAGCCGGTGTTT 60.251 50.000 14.49 0.00 0.00 2.83
2309 3798 0.960364 CATAGGTTGCAGCCGGTGTT 60.960 55.000 14.49 0.00 0.00 3.32
2310 3799 1.377202 CATAGGTTGCAGCCGGTGT 60.377 57.895 14.49 0.00 0.00 4.16
2311 3800 3.501396 CATAGGTTGCAGCCGGTG 58.499 61.111 14.49 12.78 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.