Multiple sequence alignment - TraesCS1A01G082400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G082400 chr1A 100.000 2994 0 0 1 2994 65662585 65665578 0.000000e+00 5529.0
1 TraesCS1A01G082400 chr1B 89.842 1644 117 29 563 2185 108094339 108092725 0.000000e+00 2065.0
2 TraesCS1A01G082400 chr1B 95.122 82 4 0 2913 2994 108193326 108193407 2.420000e-26 130.0
3 TraesCS1A01G082400 chr1D 91.046 1262 87 15 993 2243 66763913 66765159 0.000000e+00 1681.0
4 TraesCS1A01G082400 chr1D 95.226 398 17 2 563 959 66763515 66763911 1.960000e-176 628.0
5 TraesCS1A01G082400 chr1D 82.463 536 44 26 5 531 66763022 66763516 9.920000e-115 424.0
6 TraesCS1A01G082400 chr1D 82.374 278 28 13 2240 2512 66767160 66767421 3.880000e-54 222.0
7 TraesCS1A01G082400 chr1D 85.022 227 20 8 2599 2811 66779307 66779533 5.030000e-53 219.0
8 TraesCS1A01G082400 chr3B 90.604 596 52 2 966 1561 391787190 391786599 0.000000e+00 787.0
9 TraesCS1A01G082400 chr3B 76.733 202 39 7 1674 1871 472306268 472306071 4.080000e-19 106.0
10 TraesCS1A01G082400 chr2B 84.034 119 15 4 1621 1737 526670309 526670193 8.770000e-21 111.0
11 TraesCS1A01G082400 chr2B 91.111 45 4 0 1827 1871 796278198 796278242 8.960000e-06 62.1
12 TraesCS1A01G082400 chr2B 88.889 45 5 0 1827 1871 795643141 795643185 4.170000e-04 56.5
13 TraesCS1A01G082400 chr3D 74.704 253 56 7 1623 1871 362424014 362423766 4.080000e-19 106.0
14 TraesCS1A01G082400 chr5A 75.510 196 44 4 1677 1870 597279404 597279211 3.180000e-15 93.5
15 TraesCS1A01G082400 chr2A 73.946 261 48 14 1621 1871 761541640 761541390 1.480000e-13 87.9
16 TraesCS1A01G082400 chr2A 100.000 28 0 0 21 48 773068608 773068635 5.000000e-03 52.8
17 TraesCS1A01G082400 chr5D 72.656 256 56 12 1623 1871 478000422 478000174 4.140000e-09 73.1
18 TraesCS1A01G082400 chr5B 71.713 251 65 6 1623 1870 585495307 585495060 6.930000e-07 65.8
19 TraesCS1A01G082400 chrUn 91.111 45 4 0 1827 1871 22889142 22889186 8.960000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G082400 chr1A 65662585 65665578 2993 False 5529.00 5529 100.00000 1 2994 1 chr1A.!!$F1 2993
1 TraesCS1A01G082400 chr1B 108092725 108094339 1614 True 2065.00 2065 89.84200 563 2185 1 chr1B.!!$R1 1622
2 TraesCS1A01G082400 chr1D 66763022 66767421 4399 False 738.75 1681 87.77725 5 2512 4 chr1D.!!$F2 2507
3 TraesCS1A01G082400 chr3B 391786599 391787190 591 True 787.00 787 90.60400 966 1561 1 chr3B.!!$R1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
693 711 0.464036 TATGCCTCCGCTTCGTTGAT 59.536 50.0 0.0 0.0 35.36 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2563 4610 0.035439 CGTAGGGGCCACAACTTCAT 60.035 55.0 8.31 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.823647 TGTATGAAGAACTATGAAATCTTCCTC 57.176 33.333 11.08 4.17 45.36 3.71
138 139 8.739972 ACATGACAACATCCTTTTCCTAAATAC 58.260 33.333 0.00 0.00 34.15 1.89
212 216 6.867550 ACGAGATGTCATGTATCTCAGAAAA 58.132 36.000 26.85 0.00 46.94 2.29
232 236 5.869649 AAAAATAGTTTTGTGTGGCTCCT 57.130 34.783 0.00 0.00 35.58 3.69
263 268 7.906199 AGAACTGCTAGGACTTTATGTATCT 57.094 36.000 0.00 0.00 0.00 1.98
264 269 7.947282 AGAACTGCTAGGACTTTATGTATCTC 58.053 38.462 0.00 0.00 0.00 2.75
265 270 7.561722 AGAACTGCTAGGACTTTATGTATCTCA 59.438 37.037 0.00 0.00 0.00 3.27
266 271 7.847711 ACTGCTAGGACTTTATGTATCTCAT 57.152 36.000 0.00 0.00 40.25 2.90
267 272 7.891561 ACTGCTAGGACTTTATGTATCTCATC 58.108 38.462 0.00 0.00 37.91 2.92
268 273 7.507277 ACTGCTAGGACTTTATGTATCTCATCA 59.493 37.037 0.00 0.00 37.91 3.07
269 274 8.427902 TGCTAGGACTTTATGTATCTCATCAT 57.572 34.615 0.00 0.00 37.91 2.45
270 275 9.533831 TGCTAGGACTTTATGTATCTCATCATA 57.466 33.333 0.00 0.00 37.91 2.15
275 280 9.950496 GGACTTTATGTATCTCATCATAATGGT 57.050 33.333 0.00 0.00 36.72 3.55
279 284 9.440773 TTTATGTATCTCATCATAATGGTCTGC 57.559 33.333 0.00 0.00 36.72 4.26
280 285 6.676990 TGTATCTCATCATAATGGTCTGCT 57.323 37.500 0.00 0.00 33.42 4.24
281 286 6.461640 TGTATCTCATCATAATGGTCTGCTG 58.538 40.000 0.00 0.00 33.42 4.41
282 287 5.563876 ATCTCATCATAATGGTCTGCTGT 57.436 39.130 0.00 0.00 33.42 4.40
283 288 4.700700 TCTCATCATAATGGTCTGCTGTG 58.299 43.478 0.00 0.00 33.42 3.66
284 289 4.162888 TCTCATCATAATGGTCTGCTGTGT 59.837 41.667 0.00 0.00 33.42 3.72
285 290 4.847198 TCATCATAATGGTCTGCTGTGTT 58.153 39.130 0.00 0.00 33.42 3.32
286 291 5.255687 TCATCATAATGGTCTGCTGTGTTT 58.744 37.500 0.00 0.00 33.42 2.83
287 292 6.413892 TCATCATAATGGTCTGCTGTGTTTA 58.586 36.000 0.00 0.00 33.42 2.01
288 293 7.056006 TCATCATAATGGTCTGCTGTGTTTAT 58.944 34.615 0.00 0.00 33.42 1.40
289 294 6.925610 TCATAATGGTCTGCTGTGTTTATC 57.074 37.500 0.00 0.00 0.00 1.75
305 310 2.071844 TATCGCCTCTGCTACCACGC 62.072 60.000 0.00 0.00 34.43 5.34
335 342 2.758009 TGTCACTAACAACCTAACCGC 58.242 47.619 0.00 0.00 34.03 5.68
339 346 1.695788 ACTAACAACCTAACCGCACCT 59.304 47.619 0.00 0.00 0.00 4.00
340 347 2.073816 CTAACAACCTAACCGCACCTG 58.926 52.381 0.00 0.00 0.00 4.00
345 352 1.198759 ACCTAACCGCACCTGACCAT 61.199 55.000 0.00 0.00 0.00 3.55
347 354 0.537188 CTAACCGCACCTGACCATCT 59.463 55.000 0.00 0.00 0.00 2.90
397 409 5.843673 TCTGCACATGTTTTCAGGTTTTA 57.156 34.783 15.48 0.00 42.35 1.52
402 414 6.259608 TGCACATGTTTTCAGGTTTTATTTGG 59.740 34.615 0.00 0.00 42.35 3.28
403 415 6.293353 GCACATGTTTTCAGGTTTTATTTGGG 60.293 38.462 0.00 0.00 42.35 4.12
404 416 5.762711 ACATGTTTTCAGGTTTTATTTGGGC 59.237 36.000 0.00 0.00 42.35 5.36
447 459 2.961522 TTAGCTTTCCGTTTTCGCTG 57.038 45.000 0.00 0.00 42.58 5.18
465 477 3.316868 CGCTGGTTTTCCTTAGGTTTTGA 59.683 43.478 0.00 0.00 41.38 2.69
466 478 4.202070 CGCTGGTTTTCCTTAGGTTTTGAA 60.202 41.667 0.00 0.00 41.38 2.69
467 479 5.289595 GCTGGTTTTCCTTAGGTTTTGAAG 58.710 41.667 0.00 0.00 41.38 3.02
468 480 5.739070 GCTGGTTTTCCTTAGGTTTTGAAGG 60.739 44.000 0.00 0.00 43.17 3.46
469 481 4.651962 TGGTTTTCCTTAGGTTTTGAAGGG 59.348 41.667 0.00 0.00 42.25 3.95
474 486 7.684317 TTTCCTTAGGTTTTGAAGGGAAAAT 57.316 32.000 0.00 0.00 42.25 1.82
475 487 7.684317 TTCCTTAGGTTTTGAAGGGAAAATT 57.316 32.000 0.00 0.00 42.25 1.82
476 488 7.061566 TCCTTAGGTTTTGAAGGGAAAATTG 57.938 36.000 0.00 0.00 42.25 2.32
480 492 8.499403 TTAGGTTTTGAAGGGAAAATTGTTTG 57.501 30.769 0.00 0.00 0.00 2.93
483 495 7.120579 AGGTTTTGAAGGGAAAATTGTTTGTTC 59.879 33.333 0.00 0.00 0.00 3.18
484 496 7.120579 GGTTTTGAAGGGAAAATTGTTTGTTCT 59.879 33.333 0.00 0.00 0.00 3.01
543 558 5.408204 CACAATATGTGCTTATGCGAGAA 57.592 39.130 0.00 0.00 41.89 2.87
544 559 5.809464 CACAATATGTGCTTATGCGAGAAA 58.191 37.500 0.00 0.00 41.89 2.52
545 560 5.678483 CACAATATGTGCTTATGCGAGAAAC 59.322 40.000 0.00 0.00 41.89 2.78
546 561 5.353956 ACAATATGTGCTTATGCGAGAAACA 59.646 36.000 0.00 0.00 43.34 2.83
547 562 3.747099 ATGTGCTTATGCGAGAAACAC 57.253 42.857 0.00 0.00 43.34 3.32
548 563 2.488952 TGTGCTTATGCGAGAAACACA 58.511 42.857 0.00 0.00 43.34 3.72
549 564 2.875317 TGTGCTTATGCGAGAAACACAA 59.125 40.909 0.00 0.00 43.34 3.33
550 565 3.501828 TGTGCTTATGCGAGAAACACAAT 59.498 39.130 0.00 0.00 43.34 2.71
551 566 4.023279 TGTGCTTATGCGAGAAACACAATT 60.023 37.500 0.00 0.00 43.34 2.32
552 567 4.321745 GTGCTTATGCGAGAAACACAATTG 59.678 41.667 3.24 3.24 43.34 2.32
553 568 4.023279 TGCTTATGCGAGAAACACAATTGT 60.023 37.500 4.92 4.92 43.34 2.71
554 569 6.068312 TGCTTATGCGAGAAACACAATTGTG 61.068 40.000 32.03 32.03 46.13 3.33
567 582 4.854399 CACAATTGTGCTTCTCCGTAAAA 58.146 39.130 24.69 0.00 39.39 1.52
579 594 2.803956 CTCCGTAAAAGGAAAAGCACGA 59.196 45.455 0.00 0.00 40.25 4.35
586 601 1.280457 AGGAAAAGCACGATCCTCCT 58.720 50.000 0.00 0.00 39.36 3.69
596 611 0.665835 CGATCCTCCTCAGACCGAAG 59.334 60.000 0.00 0.00 0.00 3.79
613 629 2.375146 GAAGGTTTGGGCATTATCGGT 58.625 47.619 0.00 0.00 0.00 4.69
627 644 5.572896 GCATTATCGGTGTCCAAAGAAAAAG 59.427 40.000 0.00 0.00 0.00 2.27
659 676 2.223900 TGAGCTAACATGGAGCATCTCG 60.224 50.000 20.24 0.00 42.69 4.04
693 711 0.464036 TATGCCTCCGCTTCGTTGAT 59.536 50.000 0.00 0.00 35.36 2.57
702 720 2.607187 CGCTTCGTTGATCCACTAAGT 58.393 47.619 11.39 0.00 0.00 2.24
762 780 6.375174 CCAGAACAATTATTGTCACCAGATCA 59.625 38.462 11.24 0.00 44.59 2.92
781 799 2.176798 TCAAAGTCAAACCCCATCACCT 59.823 45.455 0.00 0.00 0.00 4.00
930 951 2.587522 TGCGTCCTCTACATATGCTCT 58.412 47.619 1.58 0.00 0.00 4.09
944 965 2.752358 CTCTGGCTTCCCACTGCA 59.248 61.111 0.00 0.00 35.79 4.41
972 996 1.973281 CCCTTGCCGCTGTCAATGT 60.973 57.895 0.00 0.00 0.00 2.71
1099 1123 1.153958 GAGGCATTTTCGTGGCAGC 60.154 57.895 3.31 0.00 46.19 5.25
1103 1127 2.983030 ATTTTCGTGGCAGCGGCA 60.983 55.556 11.88 5.90 43.71 5.69
1104 1128 2.560119 ATTTTCGTGGCAGCGGCAA 61.560 52.632 11.88 0.00 43.71 4.52
1211 1235 0.874175 CTGCACAAGGACAACGACGA 60.874 55.000 0.00 0.00 0.00 4.20
1535 1559 0.036732 TCCTGGTGAGCATTCCACAC 59.963 55.000 0.00 0.00 36.31 3.82
1536 1560 0.250858 CCTGGTGAGCATTCCACACA 60.251 55.000 0.00 0.00 36.31 3.72
1537 1561 1.608055 CTGGTGAGCATTCCACACAA 58.392 50.000 0.00 0.00 36.31 3.33
1538 1562 1.955778 CTGGTGAGCATTCCACACAAA 59.044 47.619 0.00 0.00 36.31 2.83
1597 1627 2.809601 GTACAGCCGCACTCCACG 60.810 66.667 0.00 0.00 0.00 4.94
1603 1633 0.750546 AGCCGCACTCCACGTATCTA 60.751 55.000 0.00 0.00 0.00 1.98
1607 1637 3.255725 CCGCACTCCACGTATCTAAAAA 58.744 45.455 0.00 0.00 0.00 1.94
1819 1853 4.373116 GACAGGCAGGCGAACCGA 62.373 66.667 0.00 0.00 42.76 4.69
1875 1909 4.379243 CGGGCTCGAGTGCAACCT 62.379 66.667 15.13 0.00 37.80 3.50
1881 1915 2.743928 CGAGTGCAACCTCCCTGC 60.744 66.667 0.00 0.00 37.80 4.85
1886 1920 2.044946 GCAACCTCCCTGCCGATT 60.045 61.111 0.00 0.00 33.51 3.34
1895 1929 2.721167 CCTGCCGATTCGAGGGTGA 61.721 63.158 7.83 0.00 0.00 4.02
1927 1961 1.032114 GGTACTACCGCCGGTACTGT 61.032 60.000 12.92 12.47 38.52 3.55
1937 1971 1.763968 CCGGTACTGTGAGATCCTCA 58.236 55.000 0.00 0.00 38.25 3.86
1939 1973 2.099921 CCGGTACTGTGAGATCCTCAAG 59.900 54.545 0.00 2.42 42.46 3.02
1943 1977 1.821753 ACTGTGAGATCCTCAAGGTCG 59.178 52.381 0.00 0.00 42.46 4.79
1945 1979 1.819288 TGTGAGATCCTCAAGGTCGAC 59.181 52.381 7.13 7.13 42.46 4.20
2000 2034 0.107993 GCCCTACTCGTAACCAACCC 60.108 60.000 0.00 0.00 0.00 4.11
2003 2037 3.033184 CCCTACTCGTAACCAACCCATA 58.967 50.000 0.00 0.00 0.00 2.74
2004 2038 3.451902 CCCTACTCGTAACCAACCCATAA 59.548 47.826 0.00 0.00 0.00 1.90
2005 2039 4.080975 CCCTACTCGTAACCAACCCATAAA 60.081 45.833 0.00 0.00 0.00 1.40
2006 2040 4.872124 CCTACTCGTAACCAACCCATAAAC 59.128 45.833 0.00 0.00 0.00 2.01
2007 2041 4.628963 ACTCGTAACCAACCCATAAACT 57.371 40.909 0.00 0.00 0.00 2.66
2008 2042 4.976864 ACTCGTAACCAACCCATAAACTT 58.023 39.130 0.00 0.00 0.00 2.66
2009 2043 4.758165 ACTCGTAACCAACCCATAAACTTG 59.242 41.667 0.00 0.00 0.00 3.16
2015 2049 5.313280 ACCAACCCATAAACTTGACACTA 57.687 39.130 0.00 0.00 0.00 2.74
2024 2058 8.258007 CCCATAAACTTGACACTAATCAGTCTA 58.742 37.037 0.00 0.00 35.81 2.59
2132 2167 7.953005 TGCAAATCTTATGGATGAAACCTTA 57.047 32.000 0.00 0.00 34.45 2.69
2152 2191 8.263854 ACCTTATGGCTTCTAGCTAATTTAGA 57.736 34.615 7.63 0.00 41.99 2.10
2158 2197 6.263168 TGGCTTCTAGCTAATTTAGAAATGCC 59.737 38.462 14.94 14.94 42.73 4.40
2163 2202 8.158169 TCTAGCTAATTTAGAAATGCCATGTG 57.842 34.615 7.63 0.00 0.00 3.21
2185 2224 2.549329 TCGGGAAAACCTTTTTACTCGC 59.451 45.455 0.00 0.00 36.97 5.03
2206 2246 4.988540 CGCAATCTTTTCCCGTCTATATGA 59.011 41.667 0.00 0.00 0.00 2.15
2210 2250 5.272283 TCTTTTCCCGTCTATATGACACC 57.728 43.478 0.00 0.00 45.60 4.16
2211 2251 3.720949 TTTCCCGTCTATATGACACCG 57.279 47.619 0.00 0.00 45.60 4.94
2212 2252 2.643995 TCCCGTCTATATGACACCGA 57.356 50.000 0.00 0.00 45.60 4.69
2257 4301 8.686334 GCTATTCATAAGTTTCCTGAAATTCCA 58.314 33.333 0.00 0.00 33.03 3.53
2261 4305 9.927668 TTCATAAGTTTCCTGAAATTCCAATTC 57.072 29.630 0.00 0.00 32.36 2.17
2263 4307 9.933723 CATAAGTTTCCTGAAATTCCAATTCTT 57.066 29.630 0.00 0.00 32.36 2.52
2279 4323 5.797934 CCAATTCTTAATTTTGCGCGAAGTA 59.202 36.000 12.10 4.82 0.00 2.24
2330 4374 3.775654 CCGAGCCAGGAGTGGTCC 61.776 72.222 0.00 0.00 46.96 4.46
2341 4385 1.542547 GGAGTGGTCCGACAACATTGT 60.543 52.381 8.80 0.00 37.31 2.71
2366 4413 1.394618 CTAGAGGAGTCGGAGGTTGG 58.605 60.000 0.00 0.00 0.00 3.77
2368 4415 2.203788 AGGAGTCGGAGGTTGGCA 60.204 61.111 0.00 0.00 0.00 4.92
2369 4416 2.232298 GAGGAGTCGGAGGTTGGCAG 62.232 65.000 0.00 0.00 0.00 4.85
2373 4420 1.671379 GTCGGAGGTTGGCAGGTTC 60.671 63.158 0.00 0.00 0.00 3.62
2374 4421 2.144078 TCGGAGGTTGGCAGGTTCA 61.144 57.895 0.00 0.00 0.00 3.18
2375 4422 1.228124 CGGAGGTTGGCAGGTTCAA 60.228 57.895 0.00 0.00 0.00 2.69
2379 4426 0.468029 AGGTTGGCAGGTTCAAGTGG 60.468 55.000 0.00 0.00 0.00 4.00
2381 4428 0.755327 GTTGGCAGGTTCAAGTGGGT 60.755 55.000 0.00 0.00 0.00 4.51
2382 4429 0.754957 TTGGCAGGTTCAAGTGGGTG 60.755 55.000 0.00 0.00 0.00 4.61
2383 4430 1.903404 GGCAGGTTCAAGTGGGTGG 60.903 63.158 0.00 0.00 0.00 4.61
2384 4431 1.903404 GCAGGTTCAAGTGGGTGGG 60.903 63.158 0.00 0.00 0.00 4.61
2385 4432 1.903404 CAGGTTCAAGTGGGTGGGC 60.903 63.158 0.00 0.00 0.00 5.36
2386 4433 2.983592 GGTTCAAGTGGGTGGGCG 60.984 66.667 0.00 0.00 0.00 6.13
2387 4434 2.983592 GTTCAAGTGGGTGGGCGG 60.984 66.667 0.00 0.00 0.00 6.13
2388 4435 3.494254 TTCAAGTGGGTGGGCGGT 61.494 61.111 0.00 0.00 0.00 5.68
2389 4436 3.783362 TTCAAGTGGGTGGGCGGTG 62.783 63.158 0.00 0.00 0.00 4.94
2426 4473 2.108075 TCACAGGTGATGGAATTGTGGT 59.892 45.455 0.00 0.00 39.56 4.16
2444 4491 6.894735 TGTGGTTGATTATTTAGAGGGGTA 57.105 37.500 0.00 0.00 0.00 3.69
2445 4492 6.895782 TGTGGTTGATTATTTAGAGGGGTAG 58.104 40.000 0.00 0.00 0.00 3.18
2448 4495 5.314529 GTTGATTATTTAGAGGGGTAGCCC 58.685 45.833 23.15 23.15 44.51 5.19
2465 4512 2.660064 CCGCTAGCTGGGACAAGGT 61.660 63.158 13.93 0.00 38.70 3.50
2466 4513 1.448540 CGCTAGCTGGGACAAGGTG 60.449 63.158 13.93 0.00 38.70 4.00
2517 4564 4.759205 GGCCGCATGGGGAAGGTT 62.759 66.667 31.50 0.00 35.78 3.50
2518 4565 3.451894 GCCGCATGGGGAAGGTTG 61.452 66.667 31.50 4.30 35.78 3.77
2519 4566 2.755469 CCGCATGGGGAAGGTTGG 60.755 66.667 23.98 0.00 0.00 3.77
2520 4567 3.451894 CGCATGGGGAAGGTTGGC 61.452 66.667 0.89 0.00 0.00 4.52
2521 4568 2.283821 GCATGGGGAAGGTTGGCA 60.284 61.111 0.00 0.00 0.00 4.92
2522 4569 2.353610 GCATGGGGAAGGTTGGCAG 61.354 63.158 0.00 0.00 0.00 4.85
2523 4570 2.037847 ATGGGGAAGGTTGGCAGC 59.962 61.111 0.00 0.00 0.00 5.25
2524 4571 2.551413 ATGGGGAAGGTTGGCAGCT 61.551 57.895 0.24 0.00 0.00 4.24
2525 4572 1.214305 ATGGGGAAGGTTGGCAGCTA 61.214 55.000 0.24 0.00 0.00 3.32
2526 4573 1.077429 GGGGAAGGTTGGCAGCTAG 60.077 63.158 0.24 0.00 0.00 3.42
2527 4574 1.562672 GGGGAAGGTTGGCAGCTAGA 61.563 60.000 0.24 0.00 0.00 2.43
2528 4575 0.107459 GGGAAGGTTGGCAGCTAGAG 60.107 60.000 0.24 0.00 0.00 2.43
2529 4576 0.107459 GGAAGGTTGGCAGCTAGAGG 60.107 60.000 0.24 0.00 0.00 3.69
2530 4577 0.905357 GAAGGTTGGCAGCTAGAGGA 59.095 55.000 0.24 0.00 0.00 3.71
2531 4578 0.908198 AAGGTTGGCAGCTAGAGGAG 59.092 55.000 0.24 0.00 0.00 3.69
2532 4579 0.980231 AGGTTGGCAGCTAGAGGAGG 60.980 60.000 0.24 0.00 0.00 4.30
2533 4580 0.978146 GGTTGGCAGCTAGAGGAGGA 60.978 60.000 0.24 0.00 0.00 3.71
2534 4581 0.905357 GTTGGCAGCTAGAGGAGGAA 59.095 55.000 0.00 0.00 0.00 3.36
2535 4582 1.134551 GTTGGCAGCTAGAGGAGGAAG 60.135 57.143 0.00 0.00 0.00 3.46
2536 4583 0.336392 TGGCAGCTAGAGGAGGAAGA 59.664 55.000 0.00 0.00 0.00 2.87
2537 4584 1.062581 TGGCAGCTAGAGGAGGAAGAT 60.063 52.381 0.00 0.00 0.00 2.40
2538 4585 1.618343 GGCAGCTAGAGGAGGAAGATC 59.382 57.143 0.00 0.00 0.00 2.75
2539 4586 2.315176 GCAGCTAGAGGAGGAAGATCA 58.685 52.381 0.00 0.00 0.00 2.92
2540 4587 2.697751 GCAGCTAGAGGAGGAAGATCAA 59.302 50.000 0.00 0.00 0.00 2.57
2541 4588 3.324556 GCAGCTAGAGGAGGAAGATCAAT 59.675 47.826 0.00 0.00 0.00 2.57
2542 4589 4.526262 GCAGCTAGAGGAGGAAGATCAATA 59.474 45.833 0.00 0.00 0.00 1.90
2543 4590 5.336690 GCAGCTAGAGGAGGAAGATCAATAG 60.337 48.000 0.00 0.00 0.00 1.73
2544 4591 5.774690 CAGCTAGAGGAGGAAGATCAATAGT 59.225 44.000 0.00 0.00 0.00 2.12
2545 4592 6.945435 CAGCTAGAGGAGGAAGATCAATAGTA 59.055 42.308 0.00 0.00 0.00 1.82
2546 4593 7.615365 CAGCTAGAGGAGGAAGATCAATAGTAT 59.385 40.741 0.00 0.00 0.00 2.12
2547 4594 7.615365 AGCTAGAGGAGGAAGATCAATAGTATG 59.385 40.741 0.00 0.00 0.00 2.39
2548 4595 7.396055 GCTAGAGGAGGAAGATCAATAGTATGT 59.604 40.741 0.00 0.00 0.00 2.29
2549 4596 7.537596 AGAGGAGGAAGATCAATAGTATGTG 57.462 40.000 0.00 0.00 0.00 3.21
2550 4597 7.301420 AGAGGAGGAAGATCAATAGTATGTGA 58.699 38.462 0.00 0.00 0.00 3.58
2551 4598 7.451255 AGAGGAGGAAGATCAATAGTATGTGAG 59.549 40.741 0.00 0.00 0.00 3.51
2552 4599 7.301420 AGGAGGAAGATCAATAGTATGTGAGA 58.699 38.462 0.00 0.00 0.00 3.27
2553 4600 7.451255 AGGAGGAAGATCAATAGTATGTGAGAG 59.549 40.741 0.00 0.00 0.00 3.20
2554 4601 7.450014 GGAGGAAGATCAATAGTATGTGAGAGA 59.550 40.741 0.00 0.00 0.00 3.10
2555 4602 8.954834 AGGAAGATCAATAGTATGTGAGAGAT 57.045 34.615 0.00 0.00 0.00 2.75
2556 4603 8.805175 AGGAAGATCAATAGTATGTGAGAGATG 58.195 37.037 0.00 0.00 0.00 2.90
2557 4604 7.545265 GGAAGATCAATAGTATGTGAGAGATGC 59.455 40.741 0.00 0.00 0.00 3.91
2558 4605 6.619744 AGATCAATAGTATGTGAGAGATGCG 58.380 40.000 0.00 0.00 0.00 4.73
2559 4606 5.126396 TCAATAGTATGTGAGAGATGCGG 57.874 43.478 0.00 0.00 0.00 5.69
2560 4607 4.827284 TCAATAGTATGTGAGAGATGCGGA 59.173 41.667 0.00 0.00 0.00 5.54
2561 4608 5.301805 TCAATAGTATGTGAGAGATGCGGAA 59.698 40.000 0.00 0.00 0.00 4.30
2562 4609 3.724508 AGTATGTGAGAGATGCGGAAG 57.275 47.619 0.00 0.00 0.00 3.46
2563 4610 3.291584 AGTATGTGAGAGATGCGGAAGA 58.708 45.455 0.00 0.00 0.00 2.87
2564 4611 3.894427 AGTATGTGAGAGATGCGGAAGAT 59.106 43.478 0.00 0.00 0.00 2.40
2565 4612 2.591571 TGTGAGAGATGCGGAAGATG 57.408 50.000 0.00 0.00 0.00 2.90
2566 4613 2.102578 TGTGAGAGATGCGGAAGATGA 58.897 47.619 0.00 0.00 0.00 2.92
2567 4614 2.497273 TGTGAGAGATGCGGAAGATGAA 59.503 45.455 0.00 0.00 0.00 2.57
2568 4615 3.122297 GTGAGAGATGCGGAAGATGAAG 58.878 50.000 0.00 0.00 0.00 3.02
2569 4616 2.762887 TGAGAGATGCGGAAGATGAAGT 59.237 45.455 0.00 0.00 0.00 3.01
2570 4617 3.196469 TGAGAGATGCGGAAGATGAAGTT 59.804 43.478 0.00 0.00 0.00 2.66
2571 4618 3.529533 AGAGATGCGGAAGATGAAGTTG 58.470 45.455 0.00 0.00 0.00 3.16
2572 4619 3.055530 AGAGATGCGGAAGATGAAGTTGT 60.056 43.478 0.00 0.00 0.00 3.32
2573 4620 3.005554 AGATGCGGAAGATGAAGTTGTG 58.994 45.455 0.00 0.00 0.00 3.33
2574 4621 1.522668 TGCGGAAGATGAAGTTGTGG 58.477 50.000 0.00 0.00 0.00 4.17
2575 4622 0.169009 GCGGAAGATGAAGTTGTGGC 59.831 55.000 0.00 0.00 0.00 5.01
2576 4623 0.804989 CGGAAGATGAAGTTGTGGCC 59.195 55.000 0.00 0.00 0.00 5.36
2577 4624 1.177401 GGAAGATGAAGTTGTGGCCC 58.823 55.000 0.00 0.00 0.00 5.80
2578 4625 1.177401 GAAGATGAAGTTGTGGCCCC 58.823 55.000 0.00 0.00 0.00 5.80
2579 4626 0.779997 AAGATGAAGTTGTGGCCCCT 59.220 50.000 0.00 0.00 0.00 4.79
2580 4627 1.668826 AGATGAAGTTGTGGCCCCTA 58.331 50.000 0.00 0.00 0.00 3.53
2581 4628 1.282157 AGATGAAGTTGTGGCCCCTAC 59.718 52.381 0.00 0.00 0.00 3.18
2582 4629 0.035439 ATGAAGTTGTGGCCCCTACG 60.035 55.000 0.00 0.00 0.00 3.51
2583 4630 1.373812 GAAGTTGTGGCCCCTACGT 59.626 57.895 0.00 0.00 0.00 3.57
2584 4631 0.672711 GAAGTTGTGGCCCCTACGTC 60.673 60.000 0.00 0.00 0.00 4.34
2585 4632 1.125711 AAGTTGTGGCCCCTACGTCT 61.126 55.000 0.00 0.00 0.00 4.18
2586 4633 0.251922 AGTTGTGGCCCCTACGTCTA 60.252 55.000 0.00 0.00 0.00 2.59
2587 4634 0.609662 GTTGTGGCCCCTACGTCTAA 59.390 55.000 0.00 0.00 0.00 2.10
2588 4635 1.002315 GTTGTGGCCCCTACGTCTAAA 59.998 52.381 0.00 0.00 0.00 1.85
2589 4636 1.575419 TGTGGCCCCTACGTCTAAAT 58.425 50.000 0.00 0.00 0.00 1.40
2590 4637 1.910671 TGTGGCCCCTACGTCTAAATT 59.089 47.619 0.00 0.00 0.00 1.82
2591 4638 3.106054 TGTGGCCCCTACGTCTAAATTA 58.894 45.455 0.00 0.00 0.00 1.40
2592 4639 3.133362 TGTGGCCCCTACGTCTAAATTAG 59.867 47.826 0.00 0.00 0.00 1.73
2593 4640 3.385755 GTGGCCCCTACGTCTAAATTAGA 59.614 47.826 0.00 0.00 0.00 2.10
2594 4641 4.040095 GTGGCCCCTACGTCTAAATTAGAT 59.960 45.833 5.96 0.00 37.13 1.98
2595 4642 4.039973 TGGCCCCTACGTCTAAATTAGATG 59.960 45.833 17.94 17.94 45.25 2.90
2596 4643 4.562963 GGCCCCTACGTCTAAATTAGATGG 60.563 50.000 21.99 12.78 44.29 3.51
2597 4644 4.040095 GCCCCTACGTCTAAATTAGATGGT 59.960 45.833 21.99 16.82 44.29 3.55
2598 4645 5.454329 GCCCCTACGTCTAAATTAGATGGTT 60.454 44.000 21.99 8.38 44.29 3.67
2599 4646 6.239402 GCCCCTACGTCTAAATTAGATGGTTA 60.239 42.308 21.99 8.96 44.29 2.85
2600 4647 7.687592 GCCCCTACGTCTAAATTAGATGGTTAA 60.688 40.741 21.99 7.56 44.29 2.01
2601 4648 7.654923 CCCCTACGTCTAAATTAGATGGTTAAC 59.345 40.741 21.99 0.00 44.29 2.01
2602 4649 8.199449 CCCTACGTCTAAATTAGATGGTTAACA 58.801 37.037 21.99 3.39 44.29 2.41
2603 4650 9.590451 CCTACGTCTAAATTAGATGGTTAACAA 57.410 33.333 21.99 0.00 44.29 2.83
2617 4664 9.212641 AGATGGTTAACAATATCGATTGAGATG 57.787 33.333 1.71 0.00 44.59 2.90
2618 4665 9.208022 GATGGTTAACAATATCGATTGAGATGA 57.792 33.333 1.71 0.00 44.59 2.92
2619 4666 8.593492 TGGTTAACAATATCGATTGAGATGAG 57.407 34.615 1.71 0.00 44.59 2.90
2620 4667 8.421002 TGGTTAACAATATCGATTGAGATGAGA 58.579 33.333 1.71 0.00 44.59 3.27
2621 4668 8.920665 GGTTAACAATATCGATTGAGATGAGAG 58.079 37.037 1.71 0.00 44.59 3.20
2622 4669 9.469807 GTTAACAATATCGATTGAGATGAGAGT 57.530 33.333 1.71 0.00 44.59 3.24
2625 4672 9.853555 AACAATATCGATTGAGATGAGAGTATC 57.146 33.333 1.71 0.00 44.59 2.24
2626 4673 9.018582 ACAATATCGATTGAGATGAGAGTATCA 57.981 33.333 1.71 0.00 44.59 2.15
2647 4694 9.689976 GTATCATAGATAGTATCATGTGATGCC 57.310 37.037 22.28 14.62 37.80 4.40
2648 4695 7.722949 TCATAGATAGTATCATGTGATGCCA 57.277 36.000 12.66 0.00 37.80 4.92
2649 4696 8.137745 TCATAGATAGTATCATGTGATGCCAA 57.862 34.615 12.66 0.00 37.80 4.52
2650 4697 8.037166 TCATAGATAGTATCATGTGATGCCAAC 58.963 37.037 12.66 0.00 37.80 3.77
2651 4698 6.430962 AGATAGTATCATGTGATGCCAACT 57.569 37.500 12.66 4.04 37.80 3.16
2652 4699 7.544804 AGATAGTATCATGTGATGCCAACTA 57.455 36.000 12.66 5.94 37.80 2.24
2653 4700 7.966812 AGATAGTATCATGTGATGCCAACTAA 58.033 34.615 12.66 0.00 37.80 2.24
2654 4701 8.093307 AGATAGTATCATGTGATGCCAACTAAG 58.907 37.037 12.66 0.00 37.80 2.18
2655 4702 4.818546 AGTATCATGTGATGCCAACTAAGC 59.181 41.667 5.78 0.00 37.80 3.09
2656 4703 3.070476 TCATGTGATGCCAACTAAGCA 57.930 42.857 0.00 0.00 45.94 3.91
2677 4724 6.122850 GCATGAAGCTAACATTACATGTCA 57.877 37.500 0.00 0.00 40.91 3.58
2678 4725 6.732154 GCATGAAGCTAACATTACATGTCAT 58.268 36.000 0.00 0.00 40.91 3.06
2679 4726 7.198390 GCATGAAGCTAACATTACATGTCATT 58.802 34.615 0.00 0.00 40.91 2.57
2680 4727 8.344831 GCATGAAGCTAACATTACATGTCATTA 58.655 33.333 0.00 0.00 40.91 1.90
2740 4787 7.316544 TGACATCGTATCATAGCATATACGT 57.683 36.000 12.84 0.00 46.83 3.57
2741 4788 7.186804 TGACATCGTATCATAGCATATACGTG 58.813 38.462 12.84 12.31 46.83 4.49
2742 4789 6.495706 ACATCGTATCATAGCATATACGTGG 58.504 40.000 12.84 9.53 46.83 4.94
2743 4790 6.317893 ACATCGTATCATAGCATATACGTGGA 59.682 38.462 12.84 0.00 46.83 4.02
2744 4791 6.746745 TCGTATCATAGCATATACGTGGAA 57.253 37.500 12.84 0.00 46.83 3.53
2745 4792 6.549061 TCGTATCATAGCATATACGTGGAAC 58.451 40.000 12.84 0.00 46.83 3.62
2759 4806 3.963383 GTGGAACGACAAAAGTCATGT 57.037 42.857 0.00 0.00 0.00 3.21
2760 4807 4.287238 GTGGAACGACAAAAGTCATGTT 57.713 40.909 0.00 0.00 0.00 2.71
2761 4808 4.035017 GTGGAACGACAAAAGTCATGTTG 58.965 43.478 0.00 0.00 38.03 3.33
2762 4809 3.066064 TGGAACGACAAAAGTCATGTTGG 59.934 43.478 0.00 0.00 36.65 3.77
2763 4810 3.314080 GGAACGACAAAAGTCATGTTGGA 59.686 43.478 0.00 0.00 36.65 3.53
2764 4811 4.201970 GGAACGACAAAAGTCATGTTGGAA 60.202 41.667 0.00 0.00 36.65 3.53
2765 4812 5.507315 GGAACGACAAAAGTCATGTTGGAAT 60.507 40.000 0.00 0.00 36.65 3.01
2766 4813 5.514274 ACGACAAAAGTCATGTTGGAATT 57.486 34.783 0.00 0.00 36.65 2.17
2767 4814 5.519722 ACGACAAAAGTCATGTTGGAATTC 58.480 37.500 0.00 0.00 36.65 2.17
2768 4815 5.067153 ACGACAAAAGTCATGTTGGAATTCA 59.933 36.000 7.93 0.00 36.65 2.57
2769 4816 6.151691 CGACAAAAGTCATGTTGGAATTCAT 58.848 36.000 7.93 0.00 0.00 2.57
2770 4817 7.040755 ACGACAAAAGTCATGTTGGAATTCATA 60.041 33.333 7.93 0.00 36.65 2.15
2771 4818 7.970061 CGACAAAAGTCATGTTGGAATTCATAT 59.030 33.333 7.93 0.00 0.00 1.78
2772 4819 9.643693 GACAAAAGTCATGTTGGAATTCATATT 57.356 29.630 7.93 0.00 0.00 1.28
2773 4820 9.426837 ACAAAAGTCATGTTGGAATTCATATTG 57.573 29.630 7.93 0.00 0.00 1.90
2774 4821 8.875803 CAAAAGTCATGTTGGAATTCATATTGG 58.124 33.333 7.93 0.00 0.00 3.16
2775 4822 7.959658 AAGTCATGTTGGAATTCATATTGGA 57.040 32.000 7.93 0.00 0.00 3.53
2776 4823 7.959658 AGTCATGTTGGAATTCATATTGGAA 57.040 32.000 7.93 0.00 0.00 3.53
2777 4824 8.543293 AGTCATGTTGGAATTCATATTGGAAT 57.457 30.769 7.93 0.00 39.11 3.01
2820 4867 7.837202 AGATAGTCACTCTACGATACTATGC 57.163 40.000 0.00 0.00 34.39 3.14
2821 4868 7.387643 AGATAGTCACTCTACGATACTATGCA 58.612 38.462 0.00 0.00 34.39 3.96
2822 4869 8.044309 AGATAGTCACTCTACGATACTATGCAT 58.956 37.037 3.79 3.79 34.39 3.96
2823 4870 6.885952 AGTCACTCTACGATACTATGCATT 57.114 37.500 3.54 0.00 0.00 3.56
2824 4871 6.673106 AGTCACTCTACGATACTATGCATTG 58.327 40.000 3.54 5.32 0.00 2.82
2825 4872 6.263392 AGTCACTCTACGATACTATGCATTGT 59.737 38.462 17.70 17.70 0.00 2.71
2826 4873 6.360947 GTCACTCTACGATACTATGCATTGTG 59.639 42.308 21.78 9.34 0.00 3.33
2827 4874 6.262273 TCACTCTACGATACTATGCATTGTGA 59.738 38.462 21.78 9.63 0.00 3.58
2828 4875 7.040409 TCACTCTACGATACTATGCATTGTGAT 60.040 37.037 21.78 11.93 0.00 3.06
2829 4876 7.061557 CACTCTACGATACTATGCATTGTGATG 59.938 40.741 21.78 13.45 36.32 3.07
2830 4877 7.040409 ACTCTACGATACTATGCATTGTGATGA 60.040 37.037 21.78 4.16 35.16 2.92
2831 4878 7.830739 TCTACGATACTATGCATTGTGATGAT 58.169 34.615 21.78 8.73 35.16 2.45
2832 4879 8.956426 TCTACGATACTATGCATTGTGATGATA 58.044 33.333 21.78 3.09 35.16 2.15
2833 4880 9.230932 CTACGATACTATGCATTGTGATGATAG 57.769 37.037 21.78 10.95 35.16 2.08
2834 4881 7.606349 ACGATACTATGCATTGTGATGATAGT 58.394 34.615 21.78 11.50 38.57 2.12
2835 4882 8.739972 ACGATACTATGCATTGTGATGATAGTA 58.260 33.333 21.78 12.26 39.60 1.82
2836 4883 9.741647 CGATACTATGCATTGTGATGATAGTAT 57.258 33.333 21.78 15.98 42.65 2.12
2860 4907 7.078249 TCATAAATGTATGATACTGCCCACT 57.922 36.000 1.09 0.00 41.00 4.00
2861 4908 8.201242 TCATAAATGTATGATACTGCCCACTA 57.799 34.615 1.09 0.00 41.00 2.74
2862 4909 8.655901 TCATAAATGTATGATACTGCCCACTAA 58.344 33.333 1.09 0.00 41.00 2.24
2863 4910 9.283768 CATAAATGTATGATACTGCCCACTAAA 57.716 33.333 4.03 0.00 39.72 1.85
2864 4911 9.860650 ATAAATGTATGATACTGCCCACTAAAA 57.139 29.630 4.03 0.00 0.00 1.52
2865 4912 7.568199 AATGTATGATACTGCCCACTAAAAC 57.432 36.000 4.03 0.00 0.00 2.43
2866 4913 6.056090 TGTATGATACTGCCCACTAAAACA 57.944 37.500 4.03 0.00 0.00 2.83
2867 4914 6.112734 TGTATGATACTGCCCACTAAAACAG 58.887 40.000 4.03 0.00 36.22 3.16
2868 4915 3.950397 TGATACTGCCCACTAAAACAGG 58.050 45.455 0.00 0.00 34.40 4.00
2869 4916 3.329520 TGATACTGCCCACTAAAACAGGT 59.670 43.478 0.00 0.00 34.40 4.00
2870 4917 2.271944 ACTGCCCACTAAAACAGGTC 57.728 50.000 0.00 0.00 34.40 3.85
2871 4918 1.774856 ACTGCCCACTAAAACAGGTCT 59.225 47.619 0.00 0.00 34.40 3.85
2872 4919 2.154462 CTGCCCACTAAAACAGGTCTG 58.846 52.381 0.00 0.00 0.00 3.51
2873 4920 1.771854 TGCCCACTAAAACAGGTCTGA 59.228 47.619 4.84 0.00 0.00 3.27
2874 4921 2.173782 TGCCCACTAAAACAGGTCTGAA 59.826 45.455 4.84 0.00 0.00 3.02
2875 4922 3.219281 GCCCACTAAAACAGGTCTGAAA 58.781 45.455 4.84 0.00 0.00 2.69
2876 4923 3.004419 GCCCACTAAAACAGGTCTGAAAC 59.996 47.826 4.84 0.00 0.00 2.78
2908 4955 8.967664 TTTACTAACATATGGACATACAACCC 57.032 34.615 7.80 0.00 0.00 4.11
2909 4956 6.824958 ACTAACATATGGACATACAACCCT 57.175 37.500 7.80 0.00 0.00 4.34
2910 4957 7.208064 ACTAACATATGGACATACAACCCTT 57.792 36.000 7.80 0.00 0.00 3.95
2911 4958 7.639378 ACTAACATATGGACATACAACCCTTT 58.361 34.615 7.80 0.00 0.00 3.11
2912 4959 8.113462 ACTAACATATGGACATACAACCCTTTT 58.887 33.333 7.80 0.00 0.00 2.27
2913 4960 7.790782 AACATATGGACATACAACCCTTTTT 57.209 32.000 7.80 0.00 0.00 1.94
2939 4986 9.923143 TTTCTCGATTGAGTACTCTTATTTTGA 57.077 29.630 23.01 13.43 43.09 2.69
2940 4987 9.923143 TTCTCGATTGAGTACTCTTATTTTGAA 57.077 29.630 23.01 15.04 43.09 2.69
2941 4988 9.355215 TCTCGATTGAGTACTCTTATTTTGAAC 57.645 33.333 23.01 4.21 43.09 3.18
2942 4989 8.475331 TCGATTGAGTACTCTTATTTTGAACC 57.525 34.615 23.01 0.00 0.00 3.62
2943 4990 8.092068 TCGATTGAGTACTCTTATTTTGAACCA 58.908 33.333 23.01 0.00 0.00 3.67
2944 4991 8.883731 CGATTGAGTACTCTTATTTTGAACCAT 58.116 33.333 23.01 0.00 0.00 3.55
2948 4995 9.667107 TGAGTACTCTTATTTTGAACCATTAGG 57.333 33.333 23.01 0.00 42.21 2.69
2962 5009 4.882671 CCATTAGGTCCGAAGACAAATG 57.117 45.455 10.94 10.94 45.48 2.32
2963 5010 4.513442 CCATTAGGTCCGAAGACAAATGA 58.487 43.478 16.10 0.00 43.64 2.57
2964 5011 5.126067 CCATTAGGTCCGAAGACAAATGAT 58.874 41.667 16.10 0.00 43.64 2.45
2965 5012 5.237344 CCATTAGGTCCGAAGACAAATGATC 59.763 44.000 16.10 0.00 43.64 2.92
2966 5013 5.677319 TTAGGTCCGAAGACAAATGATCT 57.323 39.130 0.00 0.00 45.48 2.75
2967 5014 4.559862 AGGTCCGAAGACAAATGATCTT 57.440 40.909 0.00 0.00 45.48 2.40
2968 5015 4.508662 AGGTCCGAAGACAAATGATCTTC 58.491 43.478 4.93 4.93 45.48 2.87
2969 5016 3.623510 GGTCCGAAGACAAATGATCTTCC 59.376 47.826 8.71 0.00 46.27 3.46
2970 5017 3.623510 GTCCGAAGACAAATGATCTTCCC 59.376 47.826 8.71 0.00 46.27 3.97
2971 5018 2.945668 CCGAAGACAAATGATCTTCCCC 59.054 50.000 8.71 0.00 46.27 4.81
2972 5019 3.370953 CCGAAGACAAATGATCTTCCCCT 60.371 47.826 8.71 0.00 46.27 4.79
2973 5020 4.265073 CGAAGACAAATGATCTTCCCCTT 58.735 43.478 8.71 0.00 46.27 3.95
2974 5021 4.333926 CGAAGACAAATGATCTTCCCCTTC 59.666 45.833 8.71 0.00 46.27 3.46
2975 5022 5.504853 GAAGACAAATGATCTTCCCCTTCT 58.495 41.667 3.80 0.00 44.23 2.85
2976 5023 4.853007 AGACAAATGATCTTCCCCTTCTG 58.147 43.478 0.00 0.00 0.00 3.02
2977 5024 3.950395 GACAAATGATCTTCCCCTTCTGG 59.050 47.826 0.00 0.00 0.00 3.86
2978 5025 3.334881 ACAAATGATCTTCCCCTTCTGGT 59.665 43.478 0.00 0.00 0.00 4.00
2979 5026 4.202716 ACAAATGATCTTCCCCTTCTGGTT 60.203 41.667 0.00 0.00 0.00 3.67
2980 5027 3.941704 ATGATCTTCCCCTTCTGGTTC 57.058 47.619 0.00 0.00 0.00 3.62
2981 5028 2.921221 TGATCTTCCCCTTCTGGTTCT 58.079 47.619 0.00 0.00 0.00 3.01
2982 5029 4.074799 TGATCTTCCCCTTCTGGTTCTA 57.925 45.455 0.00 0.00 0.00 2.10
2983 5030 4.435137 TGATCTTCCCCTTCTGGTTCTAA 58.565 43.478 0.00 0.00 0.00 2.10
2984 5031 4.471386 TGATCTTCCCCTTCTGGTTCTAAG 59.529 45.833 0.00 0.00 0.00 2.18
2985 5032 3.870559 TCTTCCCCTTCTGGTTCTAAGT 58.129 45.455 0.00 0.00 0.00 2.24
2986 5033 5.019657 TCTTCCCCTTCTGGTTCTAAGTA 57.980 43.478 0.00 0.00 0.00 2.24
2987 5034 5.024118 TCTTCCCCTTCTGGTTCTAAGTAG 58.976 45.833 0.00 0.00 0.00 2.57
2988 5035 4.687262 TCCCCTTCTGGTTCTAAGTAGA 57.313 45.455 0.00 0.00 0.00 2.59
2989 5036 4.351127 TCCCCTTCTGGTTCTAAGTAGAC 58.649 47.826 0.00 0.00 30.81 2.59
2990 5037 4.045590 TCCCCTTCTGGTTCTAAGTAGACT 59.954 45.833 0.00 0.00 30.81 3.24
2991 5038 4.778427 CCCCTTCTGGTTCTAAGTAGACTT 59.222 45.833 0.00 0.00 39.85 3.01
2992 5039 5.248705 CCCCTTCTGGTTCTAAGTAGACTTT 59.751 44.000 0.00 0.00 37.40 2.66
2993 5040 6.399743 CCCTTCTGGTTCTAAGTAGACTTTC 58.600 44.000 0.00 0.00 37.40 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.899892 AGGGAGGAAGATTTCATAGTTCTT 57.100 37.500 0.00 0.00 32.56 2.52
40 41 7.690454 TTCATATAGTTCATCAAGGGAGGAA 57.310 36.000 0.00 0.00 41.15 3.36
41 42 7.690454 TTTCATATAGTTCATCAAGGGAGGA 57.310 36.000 0.00 0.00 30.81 3.71
45 46 9.790344 AGAAGATTTCATATAGTTCATCAAGGG 57.210 33.333 0.00 0.00 0.00 3.95
102 103 8.585471 AAGGATGTTGTCATGTGATTAGAAAT 57.415 30.769 0.00 0.00 34.06 2.17
138 139 8.230486 AGAAATAAAGACTAGCAAATGTTCACG 58.770 33.333 0.00 0.00 0.00 4.35
212 216 5.869649 AAAGGAGCCACACAAAACTATTT 57.130 34.783 0.00 0.00 0.00 1.40
263 268 4.492494 ACACAGCAGACCATTATGATGA 57.508 40.909 0.00 0.00 36.36 2.92
264 269 5.571784 AAACACAGCAGACCATTATGATG 57.428 39.130 0.00 0.00 38.73 3.07
265 270 6.203530 CGATAAACACAGCAGACCATTATGAT 59.796 38.462 0.00 0.00 0.00 2.45
266 271 5.523552 CGATAAACACAGCAGACCATTATGA 59.476 40.000 0.00 0.00 0.00 2.15
267 272 5.741425 CGATAAACACAGCAGACCATTATG 58.259 41.667 0.00 0.00 0.00 1.90
268 273 4.273480 GCGATAAACACAGCAGACCATTAT 59.727 41.667 0.00 0.00 0.00 1.28
269 274 3.621268 GCGATAAACACAGCAGACCATTA 59.379 43.478 0.00 0.00 0.00 1.90
270 275 2.420022 GCGATAAACACAGCAGACCATT 59.580 45.455 0.00 0.00 0.00 3.16
271 276 2.009774 GCGATAAACACAGCAGACCAT 58.990 47.619 0.00 0.00 0.00 3.55
272 277 1.438651 GCGATAAACACAGCAGACCA 58.561 50.000 0.00 0.00 0.00 4.02
273 278 0.727398 GGCGATAAACACAGCAGACC 59.273 55.000 0.00 0.00 0.00 3.85
274 279 1.661112 GAGGCGATAAACACAGCAGAC 59.339 52.381 0.00 0.00 0.00 3.51
275 280 1.550524 AGAGGCGATAAACACAGCAGA 59.449 47.619 0.00 0.00 0.00 4.26
276 281 1.662629 CAGAGGCGATAAACACAGCAG 59.337 52.381 0.00 0.00 0.00 4.24
277 282 1.725641 CAGAGGCGATAAACACAGCA 58.274 50.000 0.00 0.00 0.00 4.41
278 283 0.375106 GCAGAGGCGATAAACACAGC 59.625 55.000 0.00 0.00 0.00 4.40
335 342 1.227380 GCGCCTAGATGGTCAGGTG 60.227 63.158 0.00 0.00 43.88 4.00
339 346 1.264749 AAGGTGCGCCTAGATGGTCA 61.265 55.000 21.55 0.00 46.33 4.02
340 347 0.107654 AAAGGTGCGCCTAGATGGTC 60.108 55.000 21.55 0.00 46.33 4.02
345 352 2.668632 CCCAAAGGTGCGCCTAGA 59.331 61.111 21.55 0.00 46.33 2.43
376 383 7.346695 CAAATAAAACCTGAAAACATGTGCAG 58.653 34.615 0.00 7.84 0.00 4.41
379 391 6.293353 GCCCAAATAAAACCTGAAAACATGTG 60.293 38.462 0.00 0.00 0.00 3.21
383 395 5.622346 AGCCCAAATAAAACCTGAAAACA 57.378 34.783 0.00 0.00 0.00 2.83
419 431 8.852380 GCGAAAACGGAAAGCTAAATAAAATAA 58.148 29.630 0.00 0.00 0.00 1.40
420 432 8.238631 AGCGAAAACGGAAAGCTAAATAAAATA 58.761 29.630 0.00 0.00 36.28 1.40
421 433 7.061789 CAGCGAAAACGGAAAGCTAAATAAAAT 59.938 33.333 0.00 0.00 36.28 1.82
422 434 6.361214 CAGCGAAAACGGAAAGCTAAATAAAA 59.639 34.615 0.00 0.00 36.28 1.52
423 435 5.854338 CAGCGAAAACGGAAAGCTAAATAAA 59.146 36.000 0.00 0.00 36.28 1.40
424 436 5.387279 CAGCGAAAACGGAAAGCTAAATAA 58.613 37.500 0.00 0.00 36.28 1.40
425 437 4.142773 CCAGCGAAAACGGAAAGCTAAATA 60.143 41.667 0.00 0.00 36.28 1.40
426 438 3.365969 CCAGCGAAAACGGAAAGCTAAAT 60.366 43.478 0.00 0.00 36.28 1.40
427 439 2.031508 CCAGCGAAAACGGAAAGCTAAA 60.032 45.455 0.00 0.00 36.28 1.85
428 440 1.533731 CCAGCGAAAACGGAAAGCTAA 59.466 47.619 0.00 0.00 36.28 3.09
429 441 1.153353 CCAGCGAAAACGGAAAGCTA 58.847 50.000 0.00 0.00 36.28 3.32
437 449 2.485266 AAGGAAAACCAGCGAAAACG 57.515 45.000 0.00 0.00 0.00 3.60
444 456 4.929819 TCAAAACCTAAGGAAAACCAGC 57.070 40.909 0.00 0.00 0.00 4.85
447 459 4.897076 TCCCTTCAAAACCTAAGGAAAACC 59.103 41.667 2.69 0.00 44.27 3.27
496 511 6.370166 GCTTCTCACATAAAGCACTACTTTCT 59.630 38.462 2.41 0.00 45.78 2.52
527 542 3.073678 TGTGTTTCTCGCATAAGCACAT 58.926 40.909 7.84 0.00 41.29 3.21
528 543 2.488952 TGTGTTTCTCGCATAAGCACA 58.511 42.857 7.84 7.84 43.08 4.57
529 544 3.536158 TTGTGTTTCTCGCATAAGCAC 57.464 42.857 0.00 0.00 42.27 4.40
530 545 4.023279 ACAATTGTGTTTCTCGCATAAGCA 60.023 37.500 11.07 0.00 35.72 3.91
531 546 4.321745 CACAATTGTGTTTCTCGCATAAGC 59.678 41.667 27.08 0.00 40.96 3.09
532 547 5.980324 CACAATTGTGTTTCTCGCATAAG 57.020 39.130 27.08 0.00 40.96 1.73
533 548 5.507149 AAGCACAATTGTGTTTCTCGCATAA 60.507 36.000 33.01 0.00 44.30 1.90
534 549 4.023279 AAGCACAATTGTGTTTCTCGCATA 60.023 37.500 33.01 0.00 44.30 3.14
535 550 3.243501 AAGCACAATTGTGTTTCTCGCAT 60.244 39.130 33.01 12.92 44.30 4.73
536 551 2.098934 AAGCACAATTGTGTTTCTCGCA 59.901 40.909 33.01 0.00 44.30 5.10
537 552 2.731217 AAGCACAATTGTGTTTCTCGC 58.269 42.857 33.01 20.29 44.30 5.03
545 560 9.536049 TTCCTTTTACGGAGAAGCACAATTGTG 62.536 40.741 30.20 30.20 40.52 3.33
546 561 4.023193 CCTTTTACGGAGAAGCACAATTGT 60.023 41.667 4.92 4.92 0.00 2.71
547 562 4.215399 TCCTTTTACGGAGAAGCACAATTG 59.785 41.667 3.24 3.24 0.00 2.32
548 563 4.394729 TCCTTTTACGGAGAAGCACAATT 58.605 39.130 0.00 0.00 0.00 2.32
549 564 4.015872 TCCTTTTACGGAGAAGCACAAT 57.984 40.909 0.00 0.00 0.00 2.71
550 565 3.478857 TCCTTTTACGGAGAAGCACAA 57.521 42.857 0.00 0.00 0.00 3.33
551 566 3.478857 TTCCTTTTACGGAGAAGCACA 57.521 42.857 0.00 0.00 33.89 4.57
552 567 4.784329 CTTTTCCTTTTACGGAGAAGCAC 58.216 43.478 0.00 0.00 38.12 4.40
555 570 4.610680 CGTGCTTTTCCTTTTACGGAGAAG 60.611 45.833 5.93 5.93 44.13 2.85
556 571 3.249080 CGTGCTTTTCCTTTTACGGAGAA 59.751 43.478 0.00 0.00 33.89 2.87
557 572 2.803956 CGTGCTTTTCCTTTTACGGAGA 59.196 45.455 0.00 0.00 33.89 3.71
558 573 2.803956 TCGTGCTTTTCCTTTTACGGAG 59.196 45.455 0.00 0.00 33.89 4.63
559 574 2.836262 TCGTGCTTTTCCTTTTACGGA 58.164 42.857 0.00 0.00 32.89 4.69
560 575 3.425758 GGATCGTGCTTTTCCTTTTACGG 60.426 47.826 0.00 0.00 32.89 4.02
561 576 3.435671 AGGATCGTGCTTTTCCTTTTACG 59.564 43.478 0.00 0.00 36.46 3.18
567 582 1.208293 GAGGAGGATCGTGCTTTTCCT 59.792 52.381 10.92 0.91 42.58 3.36
579 594 0.336737 ACCTTCGGTCTGAGGAGGAT 59.663 55.000 6.43 0.00 0.00 3.24
586 601 1.072505 GCCCAAACCTTCGGTCTGA 59.927 57.895 0.00 0.00 33.12 3.27
596 611 1.404035 GACACCGATAATGCCCAAACC 59.596 52.381 0.00 0.00 0.00 3.27
613 629 3.303938 TGCCATCCTTTTTCTTTGGACA 58.696 40.909 0.00 0.00 32.16 4.02
627 644 2.923121 TGTTAGCTCAAGATGCCATCC 58.077 47.619 0.00 0.00 0.00 3.51
659 676 2.094234 AGGCATAAAACATTTGGCGTCC 60.094 45.455 0.00 0.00 40.53 4.79
693 711 4.349636 TCAATGGTTTCCTCACTTAGTGGA 59.650 41.667 12.79 0.00 38.10 4.02
702 720 2.912956 AGCTAGGTCAATGGTTTCCTCA 59.087 45.455 0.00 0.00 0.00 3.86
762 780 2.176798 TGAGGTGATGGGGTTTGACTTT 59.823 45.455 0.00 0.00 0.00 2.66
781 799 1.402787 TAGACGAGGCATCTGCATGA 58.597 50.000 0.00 0.00 44.36 3.07
913 934 2.896685 AGCCAGAGCATATGTAGAGGAC 59.103 50.000 4.29 0.16 43.56 3.85
930 951 1.782201 ATCTGTGCAGTGGGAAGCCA 61.782 55.000 0.00 0.00 0.00 4.75
952 976 3.574074 ATTGACAGCGGCAAGGGCT 62.574 57.895 1.45 0.00 42.61 5.19
1083 1107 2.504681 CGCTGCCACGAAAATGCC 60.505 61.111 0.00 0.00 34.06 4.40
1086 1110 2.476534 CTTGCCGCTGCCACGAAAAT 62.477 55.000 0.00 0.00 36.33 1.82
1392 1416 2.893398 CAGAGGCCCCACGAGTAC 59.107 66.667 0.00 0.00 0.00 2.73
1452 1476 1.150536 GGGCCACTCCTTGTTGTCA 59.849 57.895 4.39 0.00 34.39 3.58
1482 1506 1.144496 GCGGCCGTGGTAGGATTTA 59.856 57.895 28.70 0.00 0.00 1.40
1538 1562 4.772100 ACACCGGGAATGATGATTCTTTTT 59.228 37.500 6.32 0.00 38.48 1.94
1543 1567 2.287915 CGAACACCGGGAATGATGATTC 59.712 50.000 6.32 0.00 37.80 2.52
1545 1569 1.953559 CGAACACCGGGAATGATGAT 58.046 50.000 6.32 0.00 33.91 2.45
1607 1637 9.708092 GTAGTTGTAGTTCCTGAAAAATAGACT 57.292 33.333 0.00 0.00 0.00 3.24
1881 1915 0.753262 ATCCTTCACCCTCGAATCGG 59.247 55.000 1.76 0.00 0.00 4.18
1886 1920 2.814469 CGATCCTATCCTTCACCCTCGA 60.814 54.545 0.00 0.00 0.00 4.04
1895 1929 4.044946 GGTAGTACCCGATCCTATCCTT 57.955 50.000 8.27 0.00 30.04 3.36
1927 1961 1.095600 CGTCGACCTTGAGGATCTCA 58.904 55.000 10.58 0.00 38.87 3.27
1943 1977 0.108019 AAGTTGTCCCCAAGGTCGTC 59.892 55.000 0.00 0.00 0.00 4.20
1945 1979 0.889186 CCAAGTTGTCCCCAAGGTCG 60.889 60.000 1.45 0.00 0.00 4.79
2000 2034 9.307121 CCTAGACTGATTAGTGTCAAGTTTATG 57.693 37.037 0.00 0.00 37.25 1.90
2003 2037 6.166982 GCCTAGACTGATTAGTGTCAAGTTT 58.833 40.000 0.00 0.00 37.25 2.66
2004 2038 5.246203 TGCCTAGACTGATTAGTGTCAAGTT 59.754 40.000 0.00 0.00 37.25 2.66
2005 2039 4.772624 TGCCTAGACTGATTAGTGTCAAGT 59.227 41.667 0.00 0.00 37.25 3.16
2006 2040 5.105554 AGTGCCTAGACTGATTAGTGTCAAG 60.106 44.000 0.00 0.00 37.25 3.02
2007 2041 4.772624 AGTGCCTAGACTGATTAGTGTCAA 59.227 41.667 0.00 0.00 37.25 3.18
2008 2042 4.158579 CAGTGCCTAGACTGATTAGTGTCA 59.841 45.833 5.81 0.00 45.39 3.58
2009 2043 4.677584 CAGTGCCTAGACTGATTAGTGTC 58.322 47.826 5.81 0.00 45.39 3.67
2015 2049 4.406972 TGATTAGCAGTGCCTAGACTGATT 59.593 41.667 12.58 5.40 45.39 2.57
2070 2105 9.574516 AGAAGTTCAACATTGGTAAAATAGACT 57.425 29.630 5.50 0.00 0.00 3.24
2132 2167 7.040132 GGCATTTCTAAATTAGCTAGAAGCCAT 60.040 37.037 16.14 0.00 43.77 4.40
2152 2191 1.626686 TTTCCCGACACATGGCATTT 58.373 45.000 0.00 0.00 0.00 2.32
2158 2197 3.726291 AAAAGGTTTTCCCGACACATG 57.274 42.857 0.00 0.00 41.86 3.21
2163 2202 3.607775 GCGAGTAAAAAGGTTTTCCCGAC 60.608 47.826 0.00 0.00 41.86 4.79
2219 2259 6.662755 ACTTATGAATAGCAATTGTGGAGGA 58.337 36.000 7.40 0.00 0.00 3.71
2225 2265 8.579850 TCAGGAAACTTATGAATAGCAATTGT 57.420 30.769 7.40 0.00 40.21 2.71
2257 4301 5.798434 GGTACTTCGCGCAAAATTAAGAATT 59.202 36.000 8.75 0.00 0.00 2.17
2259 4303 4.667161 CGGTACTTCGCGCAAAATTAAGAA 60.667 41.667 8.75 0.00 0.00 2.52
2261 4305 3.088552 CGGTACTTCGCGCAAAATTAAG 58.911 45.455 8.75 0.00 0.00 1.85
2263 4307 2.335752 TCGGTACTTCGCGCAAAATTA 58.664 42.857 8.75 0.00 0.00 1.40
2264 4308 1.127951 CTCGGTACTTCGCGCAAAATT 59.872 47.619 8.75 0.00 0.00 1.82
2332 4376 2.612972 CCTCTAGCGGTGACAATGTTGT 60.613 50.000 0.00 0.00 45.65 3.32
2335 4379 1.478510 CTCCTCTAGCGGTGACAATGT 59.521 52.381 0.00 0.00 0.00 2.71
2338 4382 1.174783 GACTCCTCTAGCGGTGACAA 58.825 55.000 7.79 0.00 0.00 3.18
2341 4385 1.451567 CCGACTCCTCTAGCGGTGA 60.452 63.158 7.79 0.00 38.96 4.02
2342 4386 1.440938 CTCCGACTCCTCTAGCGGTG 61.441 65.000 0.00 0.00 42.19 4.94
2366 4413 1.903404 CCCACCCACTTGAACCTGC 60.903 63.158 0.00 0.00 0.00 4.85
2368 4415 2.520968 GCCCACCCACTTGAACCT 59.479 61.111 0.00 0.00 0.00 3.50
2369 4416 2.983592 CGCCCACCCACTTGAACC 60.984 66.667 0.00 0.00 0.00 3.62
2399 4446 1.219124 CCATCACCTGTGACCTCCG 59.781 63.158 1.39 0.00 43.11 4.63
2407 4454 2.892852 CAACCACAATTCCATCACCTGT 59.107 45.455 0.00 0.00 0.00 4.00
2410 4457 4.806640 AATCAACCACAATTCCATCACC 57.193 40.909 0.00 0.00 0.00 4.02
2412 4459 9.473007 TCTAAATAATCAACCACAATTCCATCA 57.527 29.630 0.00 0.00 0.00 3.07
2445 4492 4.096003 TTGTCCCAGCTAGCGGGC 62.096 66.667 29.09 24.53 44.11 6.13
2448 4495 1.448540 CACCTTGTCCCAGCTAGCG 60.449 63.158 9.55 4.28 0.00 4.26
2512 4559 0.908198 CTCCTCTAGCTGCCAACCTT 59.092 55.000 0.00 0.00 0.00 3.50
2513 4560 0.980231 CCTCCTCTAGCTGCCAACCT 60.980 60.000 0.00 0.00 0.00 3.50
2514 4561 0.978146 TCCTCCTCTAGCTGCCAACC 60.978 60.000 0.00 0.00 0.00 3.77
2515 4562 0.905357 TTCCTCCTCTAGCTGCCAAC 59.095 55.000 0.00 0.00 0.00 3.77
2516 4563 1.198713 CTTCCTCCTCTAGCTGCCAA 58.801 55.000 0.00 0.00 0.00 4.52
2517 4564 0.336392 TCTTCCTCCTCTAGCTGCCA 59.664 55.000 0.00 0.00 0.00 4.92
2518 4565 1.618343 GATCTTCCTCCTCTAGCTGCC 59.382 57.143 0.00 0.00 0.00 4.85
2519 4566 2.315176 TGATCTTCCTCCTCTAGCTGC 58.685 52.381 0.00 0.00 0.00 5.25
2520 4567 5.774690 ACTATTGATCTTCCTCCTCTAGCTG 59.225 44.000 0.00 0.00 0.00 4.24
2521 4568 5.964288 ACTATTGATCTTCCTCCTCTAGCT 58.036 41.667 0.00 0.00 0.00 3.32
2522 4569 7.396055 ACATACTATTGATCTTCCTCCTCTAGC 59.604 40.741 0.00 0.00 0.00 3.42
2523 4570 8.739039 CACATACTATTGATCTTCCTCCTCTAG 58.261 40.741 0.00 0.00 0.00 2.43
2524 4571 8.448816 TCACATACTATTGATCTTCCTCCTCTA 58.551 37.037 0.00 0.00 0.00 2.43
2525 4572 7.301420 TCACATACTATTGATCTTCCTCCTCT 58.699 38.462 0.00 0.00 0.00 3.69
2526 4573 7.450014 TCTCACATACTATTGATCTTCCTCCTC 59.550 40.741 0.00 0.00 0.00 3.71
2527 4574 7.301420 TCTCACATACTATTGATCTTCCTCCT 58.699 38.462 0.00 0.00 0.00 3.69
2528 4575 7.450014 TCTCTCACATACTATTGATCTTCCTCC 59.550 40.741 0.00 0.00 0.00 4.30
2529 4576 8.402798 TCTCTCACATACTATTGATCTTCCTC 57.597 38.462 0.00 0.00 0.00 3.71
2530 4577 8.805175 CATCTCTCACATACTATTGATCTTCCT 58.195 37.037 0.00 0.00 0.00 3.36
2531 4578 7.545265 GCATCTCTCACATACTATTGATCTTCC 59.455 40.741 0.00 0.00 0.00 3.46
2532 4579 7.273164 CGCATCTCTCACATACTATTGATCTTC 59.727 40.741 0.00 0.00 0.00 2.87
2533 4580 7.089538 CGCATCTCTCACATACTATTGATCTT 58.910 38.462 0.00 0.00 0.00 2.40
2534 4581 6.350027 CCGCATCTCTCACATACTATTGATCT 60.350 42.308 0.00 0.00 0.00 2.75
2535 4582 5.804473 CCGCATCTCTCACATACTATTGATC 59.196 44.000 0.00 0.00 0.00 2.92
2536 4583 5.478332 TCCGCATCTCTCACATACTATTGAT 59.522 40.000 0.00 0.00 0.00 2.57
2537 4584 4.827284 TCCGCATCTCTCACATACTATTGA 59.173 41.667 0.00 0.00 0.00 2.57
2538 4585 5.126396 TCCGCATCTCTCACATACTATTG 57.874 43.478 0.00 0.00 0.00 1.90
2539 4586 5.536538 TCTTCCGCATCTCTCACATACTATT 59.463 40.000 0.00 0.00 0.00 1.73
2540 4587 5.073428 TCTTCCGCATCTCTCACATACTAT 58.927 41.667 0.00 0.00 0.00 2.12
2541 4588 4.461198 TCTTCCGCATCTCTCACATACTA 58.539 43.478 0.00 0.00 0.00 1.82
2542 4589 3.291584 TCTTCCGCATCTCTCACATACT 58.708 45.455 0.00 0.00 0.00 2.12
2543 4590 3.717400 TCTTCCGCATCTCTCACATAC 57.283 47.619 0.00 0.00 0.00 2.39
2544 4591 3.891366 TCATCTTCCGCATCTCTCACATA 59.109 43.478 0.00 0.00 0.00 2.29
2545 4592 2.697229 TCATCTTCCGCATCTCTCACAT 59.303 45.455 0.00 0.00 0.00 3.21
2546 4593 2.102578 TCATCTTCCGCATCTCTCACA 58.897 47.619 0.00 0.00 0.00 3.58
2547 4594 2.879002 TCATCTTCCGCATCTCTCAC 57.121 50.000 0.00 0.00 0.00 3.51
2548 4595 2.762887 ACTTCATCTTCCGCATCTCTCA 59.237 45.455 0.00 0.00 0.00 3.27
2549 4596 3.451141 ACTTCATCTTCCGCATCTCTC 57.549 47.619 0.00 0.00 0.00 3.20
2550 4597 3.055530 ACAACTTCATCTTCCGCATCTCT 60.056 43.478 0.00 0.00 0.00 3.10
2551 4598 3.063180 CACAACTTCATCTTCCGCATCTC 59.937 47.826 0.00 0.00 0.00 2.75
2552 4599 3.005554 CACAACTTCATCTTCCGCATCT 58.994 45.455 0.00 0.00 0.00 2.90
2553 4600 2.096496 CCACAACTTCATCTTCCGCATC 59.904 50.000 0.00 0.00 0.00 3.91
2554 4601 2.086869 CCACAACTTCATCTTCCGCAT 58.913 47.619 0.00 0.00 0.00 4.73
2555 4602 1.522668 CCACAACTTCATCTTCCGCA 58.477 50.000 0.00 0.00 0.00 5.69
2556 4603 0.169009 GCCACAACTTCATCTTCCGC 59.831 55.000 0.00 0.00 0.00 5.54
2557 4604 0.804989 GGCCACAACTTCATCTTCCG 59.195 55.000 0.00 0.00 0.00 4.30
2558 4605 1.177401 GGGCCACAACTTCATCTTCC 58.823 55.000 4.39 0.00 0.00 3.46
2559 4606 1.177401 GGGGCCACAACTTCATCTTC 58.823 55.000 4.39 0.00 0.00 2.87
2560 4607 0.779997 AGGGGCCACAACTTCATCTT 59.220 50.000 8.31 0.00 0.00 2.40
2561 4608 1.282157 GTAGGGGCCACAACTTCATCT 59.718 52.381 8.31 0.00 0.00 2.90
2562 4609 1.751437 GTAGGGGCCACAACTTCATC 58.249 55.000 8.31 0.00 0.00 2.92
2563 4610 0.035439 CGTAGGGGCCACAACTTCAT 60.035 55.000 8.31 0.00 0.00 2.57
2564 4611 1.373435 CGTAGGGGCCACAACTTCA 59.627 57.895 8.31 0.00 0.00 3.02
2565 4612 0.672711 GACGTAGGGGCCACAACTTC 60.673 60.000 8.31 0.00 0.00 3.01
2566 4613 1.125711 AGACGTAGGGGCCACAACTT 61.126 55.000 8.31 0.00 0.00 2.66
2567 4614 0.251922 TAGACGTAGGGGCCACAACT 60.252 55.000 8.31 0.00 0.00 3.16
2568 4615 0.609662 TTAGACGTAGGGGCCACAAC 59.390 55.000 8.31 0.00 0.00 3.32
2569 4616 1.350071 TTTAGACGTAGGGGCCACAA 58.650 50.000 8.31 0.00 0.00 3.33
2570 4617 1.575419 ATTTAGACGTAGGGGCCACA 58.425 50.000 8.31 0.00 0.00 4.17
2571 4618 2.704464 AATTTAGACGTAGGGGCCAC 57.296 50.000 4.39 0.00 0.00 5.01
2572 4619 3.645434 TCTAATTTAGACGTAGGGGCCA 58.355 45.455 4.39 0.00 0.00 5.36
2573 4620 4.562963 CCATCTAATTTAGACGTAGGGGCC 60.563 50.000 8.27 0.00 37.69 5.80
2574 4621 4.040095 ACCATCTAATTTAGACGTAGGGGC 59.960 45.833 8.27 0.00 37.69 5.80
2575 4622 5.803237 ACCATCTAATTTAGACGTAGGGG 57.197 43.478 8.27 6.46 37.69 4.79
2576 4623 8.199449 TGTTAACCATCTAATTTAGACGTAGGG 58.801 37.037 8.27 7.92 37.69 3.53
2577 4624 9.590451 TTGTTAACCATCTAATTTAGACGTAGG 57.410 33.333 8.27 10.27 37.69 3.18
2591 4638 9.212641 CATCTCAATCGATATTGTTAACCATCT 57.787 33.333 0.00 0.00 42.66 2.90
2592 4639 9.208022 TCATCTCAATCGATATTGTTAACCATC 57.792 33.333 0.00 2.90 42.66 3.51
2593 4640 9.212641 CTCATCTCAATCGATATTGTTAACCAT 57.787 33.333 0.00 0.00 42.66 3.55
2594 4641 8.421002 TCTCATCTCAATCGATATTGTTAACCA 58.579 33.333 0.00 0.00 42.66 3.67
2595 4642 8.818141 TCTCATCTCAATCGATATTGTTAACC 57.182 34.615 0.00 0.00 42.66 2.85
2596 4643 9.469807 ACTCTCATCTCAATCGATATTGTTAAC 57.530 33.333 0.00 0.00 42.66 2.01
2599 4646 9.853555 GATACTCTCATCTCAATCGATATTGTT 57.146 33.333 0.00 0.00 42.66 2.83
2600 4647 9.018582 TGATACTCTCATCTCAATCGATATTGT 57.981 33.333 0.00 0.00 42.66 2.71
2605 4652 9.631257 ATCTATGATACTCTCATCTCAATCGAT 57.369 33.333 0.00 0.00 43.70 3.59
2621 4668 9.689976 GGCATCACATGATACTATCTATGATAC 57.310 37.037 0.00 7.12 32.63 2.24
2622 4669 9.425248 TGGCATCACATGATACTATCTATGATA 57.575 33.333 0.00 0.00 32.63 2.15
2623 4670 8.315220 TGGCATCACATGATACTATCTATGAT 57.685 34.615 0.00 8.69 32.63 2.45
2624 4671 7.722949 TGGCATCACATGATACTATCTATGA 57.277 36.000 0.00 7.31 32.63 2.15
2625 4672 8.039538 AGTTGGCATCACATGATACTATCTATG 58.960 37.037 0.00 3.30 32.63 2.23
2626 4673 8.143673 AGTTGGCATCACATGATACTATCTAT 57.856 34.615 0.00 0.00 32.63 1.98
2627 4674 7.544804 AGTTGGCATCACATGATACTATCTA 57.455 36.000 0.00 0.00 32.63 1.98
2628 4675 6.430962 AGTTGGCATCACATGATACTATCT 57.569 37.500 0.00 0.00 32.63 1.98
2629 4676 7.148507 GCTTAGTTGGCATCACATGATACTATC 60.149 40.741 0.00 0.00 32.63 2.08
2630 4677 6.652481 GCTTAGTTGGCATCACATGATACTAT 59.348 38.462 0.00 0.00 32.63 2.12
2631 4678 5.991606 GCTTAGTTGGCATCACATGATACTA 59.008 40.000 0.00 0.00 32.63 1.82
2632 4679 4.818546 GCTTAGTTGGCATCACATGATACT 59.181 41.667 0.00 0.00 32.63 2.12
2633 4680 4.576053 TGCTTAGTTGGCATCACATGATAC 59.424 41.667 0.00 0.00 34.56 2.24
2634 4681 4.779696 TGCTTAGTTGGCATCACATGATA 58.220 39.130 0.00 0.00 34.56 2.15
2635 4682 3.623703 TGCTTAGTTGGCATCACATGAT 58.376 40.909 0.00 0.00 34.56 2.45
2636 4683 3.070476 TGCTTAGTTGGCATCACATGA 57.930 42.857 0.00 0.00 34.56 3.07
2637 4684 3.379057 TCATGCTTAGTTGGCATCACATG 59.621 43.478 11.46 11.46 46.94 3.21
2638 4685 3.623703 TCATGCTTAGTTGGCATCACAT 58.376 40.909 0.00 0.00 46.94 3.21
2639 4686 3.070476 TCATGCTTAGTTGGCATCACA 57.930 42.857 0.00 0.00 46.94 3.58
2640 4687 3.733077 GCTTCATGCTTAGTTGGCATCAC 60.733 47.826 0.00 0.00 46.94 3.06
2641 4688 2.424601 GCTTCATGCTTAGTTGGCATCA 59.575 45.455 0.00 0.00 46.94 3.07
2642 4689 3.075866 GCTTCATGCTTAGTTGGCATC 57.924 47.619 0.00 0.00 46.94 3.91
2648 4695 8.400947 CATGTAATGTTAGCTTCATGCTTAGTT 58.599 33.333 0.00 0.00 44.71 2.24
2649 4696 7.923888 CATGTAATGTTAGCTTCATGCTTAGT 58.076 34.615 0.00 0.00 44.71 2.24
2723 4770 6.468319 GTCGTTCCACGTATATGCTATGATAC 59.532 42.308 0.00 0.00 43.14 2.24
2724 4771 6.149807 TGTCGTTCCACGTATATGCTATGATA 59.850 38.462 0.00 0.00 43.14 2.15
2725 4772 5.048294 TGTCGTTCCACGTATATGCTATGAT 60.048 40.000 0.00 0.00 43.14 2.45
2726 4773 4.276431 TGTCGTTCCACGTATATGCTATGA 59.724 41.667 0.00 0.00 43.14 2.15
2727 4774 4.542735 TGTCGTTCCACGTATATGCTATG 58.457 43.478 0.00 0.00 43.14 2.23
2728 4775 4.841443 TGTCGTTCCACGTATATGCTAT 57.159 40.909 0.00 0.00 43.14 2.97
2729 4776 4.635833 TTGTCGTTCCACGTATATGCTA 57.364 40.909 0.00 0.00 43.14 3.49
2730 4777 3.513680 TTGTCGTTCCACGTATATGCT 57.486 42.857 0.00 0.00 43.14 3.79
2731 4778 4.092383 ACTTTTGTCGTTCCACGTATATGC 59.908 41.667 0.00 0.00 43.14 3.14
2732 4779 5.773239 ACTTTTGTCGTTCCACGTATATG 57.227 39.130 0.00 0.00 43.14 1.78
2747 4794 9.426837 CAATATGAATTCCAACATGACTTTTGT 57.573 29.630 0.00 0.00 0.00 2.83
2748 4795 8.875803 CCAATATGAATTCCAACATGACTTTTG 58.124 33.333 0.00 0.00 0.00 2.44
2749 4796 8.814931 TCCAATATGAATTCCAACATGACTTTT 58.185 29.630 0.00 0.00 0.00 2.27
2750 4797 8.365060 TCCAATATGAATTCCAACATGACTTT 57.635 30.769 0.00 0.00 0.00 2.66
2751 4798 7.959658 TCCAATATGAATTCCAACATGACTT 57.040 32.000 0.00 0.00 0.00 3.01
2752 4799 7.959658 TTCCAATATGAATTCCAACATGACT 57.040 32.000 0.00 0.00 0.00 3.41
2794 4841 9.368674 GCATAGTATCGTAGAGTGACTATCTTA 57.631 37.037 0.00 0.00 43.63 2.10
2795 4842 7.878644 TGCATAGTATCGTAGAGTGACTATCTT 59.121 37.037 0.00 0.00 43.63 2.40
2796 4843 7.387643 TGCATAGTATCGTAGAGTGACTATCT 58.612 38.462 0.00 0.00 43.63 1.98
2797 4844 7.598189 TGCATAGTATCGTAGAGTGACTATC 57.402 40.000 0.00 0.00 43.63 2.08
2798 4845 8.454894 CAATGCATAGTATCGTAGAGTGACTAT 58.545 37.037 0.00 0.00 43.63 2.12
2799 4846 7.444487 ACAATGCATAGTATCGTAGAGTGACTA 59.556 37.037 0.00 0.00 43.63 2.59
2800 4847 6.263392 ACAATGCATAGTATCGTAGAGTGACT 59.737 38.462 0.00 0.00 43.63 3.41
2801 4848 6.360947 CACAATGCATAGTATCGTAGAGTGAC 59.639 42.308 0.00 0.00 43.63 3.67
2802 4849 6.262273 TCACAATGCATAGTATCGTAGAGTGA 59.738 38.462 0.00 0.00 43.63 3.41
2803 4850 6.438763 TCACAATGCATAGTATCGTAGAGTG 58.561 40.000 0.00 0.00 43.63 3.51
2804 4851 6.635030 TCACAATGCATAGTATCGTAGAGT 57.365 37.500 0.00 0.00 43.63 3.24
2805 4852 7.308435 TCATCACAATGCATAGTATCGTAGAG 58.692 38.462 0.00 0.00 34.06 2.43
2806 4853 7.214467 TCATCACAATGCATAGTATCGTAGA 57.786 36.000 0.00 0.00 34.80 2.59
2807 4854 9.230932 CTATCATCACAATGCATAGTATCGTAG 57.769 37.037 0.00 0.00 32.58 3.51
2808 4855 8.739972 ACTATCATCACAATGCATAGTATCGTA 58.260 33.333 0.00 0.00 36.07 3.43
2809 4856 7.606349 ACTATCATCACAATGCATAGTATCGT 58.394 34.615 0.00 0.00 36.07 3.73
2810 4857 9.741647 ATACTATCATCACAATGCATAGTATCG 57.258 33.333 0.00 0.00 40.16 2.92
2836 4883 7.078249 AGTGGGCAGTATCATACATTTATGA 57.922 36.000 4.10 4.10 46.57 2.15
2837 4884 8.846943 TTAGTGGGCAGTATCATACATTTATG 57.153 34.615 0.00 0.00 37.08 1.90
2838 4885 9.860650 TTTTAGTGGGCAGTATCATACATTTAT 57.139 29.630 0.00 0.00 0.00 1.40
2839 4886 9.116067 GTTTTAGTGGGCAGTATCATACATTTA 57.884 33.333 0.00 0.00 0.00 1.40
2840 4887 7.613801 TGTTTTAGTGGGCAGTATCATACATTT 59.386 33.333 0.00 0.00 0.00 2.32
2841 4888 7.116075 TGTTTTAGTGGGCAGTATCATACATT 58.884 34.615 0.00 0.00 0.00 2.71
2842 4889 6.658849 TGTTTTAGTGGGCAGTATCATACAT 58.341 36.000 0.00 0.00 0.00 2.29
2843 4890 6.056090 TGTTTTAGTGGGCAGTATCATACA 57.944 37.500 0.00 0.00 0.00 2.29
2844 4891 5.527582 CCTGTTTTAGTGGGCAGTATCATAC 59.472 44.000 0.00 0.00 0.00 2.39
2845 4892 5.190925 ACCTGTTTTAGTGGGCAGTATCATA 59.809 40.000 0.00 0.00 0.00 2.15
2846 4893 4.018415 ACCTGTTTTAGTGGGCAGTATCAT 60.018 41.667 0.00 0.00 0.00 2.45
2847 4894 3.329520 ACCTGTTTTAGTGGGCAGTATCA 59.670 43.478 0.00 0.00 0.00 2.15
2848 4895 3.939592 GACCTGTTTTAGTGGGCAGTATC 59.060 47.826 0.00 0.00 0.00 2.24
2849 4896 3.587506 AGACCTGTTTTAGTGGGCAGTAT 59.412 43.478 0.00 0.00 0.00 2.12
2850 4897 2.976882 AGACCTGTTTTAGTGGGCAGTA 59.023 45.455 0.00 0.00 0.00 2.74
2851 4898 1.774856 AGACCTGTTTTAGTGGGCAGT 59.225 47.619 0.00 0.00 0.00 4.40
2852 4899 2.154462 CAGACCTGTTTTAGTGGGCAG 58.846 52.381 0.00 0.00 0.00 4.85
2853 4900 1.771854 TCAGACCTGTTTTAGTGGGCA 59.228 47.619 0.00 0.00 0.00 5.36
2854 4901 2.561478 TCAGACCTGTTTTAGTGGGC 57.439 50.000 0.00 0.00 0.00 5.36
2855 4902 3.568430 GGTTTCAGACCTGTTTTAGTGGG 59.432 47.826 0.00 0.00 45.55 4.61
2856 4903 4.830826 GGTTTCAGACCTGTTTTAGTGG 57.169 45.455 0.00 0.00 45.55 4.00
2882 4929 9.398538 GGGTTGTATGTCCATATGTTAGTAAAA 57.601 33.333 1.24 0.00 0.00 1.52
2883 4930 8.774183 AGGGTTGTATGTCCATATGTTAGTAAA 58.226 33.333 1.24 0.00 0.00 2.01
2884 4931 8.326765 AGGGTTGTATGTCCATATGTTAGTAA 57.673 34.615 1.24 0.00 0.00 2.24
2885 4932 7.924358 AGGGTTGTATGTCCATATGTTAGTA 57.076 36.000 1.24 0.00 0.00 1.82
2886 4933 6.824958 AGGGTTGTATGTCCATATGTTAGT 57.175 37.500 1.24 0.00 0.00 2.24
2887 4934 8.519799 AAAAGGGTTGTATGTCCATATGTTAG 57.480 34.615 1.24 0.00 0.00 2.34
2888 4935 8.887264 AAAAAGGGTTGTATGTCCATATGTTA 57.113 30.769 1.24 0.00 0.00 2.41
2889 4936 7.790782 AAAAAGGGTTGTATGTCCATATGTT 57.209 32.000 1.24 0.00 0.00 2.71
2913 4960 9.923143 TCAAAATAAGAGTACTCAATCGAGAAA 57.077 29.630 24.44 0.75 42.34 2.52
2914 4961 9.923143 TTCAAAATAAGAGTACTCAATCGAGAA 57.077 29.630 24.44 15.49 42.34 2.87
2915 4962 9.355215 GTTCAAAATAAGAGTACTCAATCGAGA 57.645 33.333 24.44 10.87 42.34 4.04
2916 4963 8.596380 GGTTCAAAATAAGAGTACTCAATCGAG 58.404 37.037 24.44 8.84 45.49 4.04
2917 4964 8.092068 TGGTTCAAAATAAGAGTACTCAATCGA 58.908 33.333 24.44 11.54 0.00 3.59
2918 4965 8.251750 TGGTTCAAAATAAGAGTACTCAATCG 57.748 34.615 24.44 9.76 0.00 3.34
2922 4969 9.667107 CCTAATGGTTCAAAATAAGAGTACTCA 57.333 33.333 24.44 5.48 0.00 3.41
2923 4970 9.668497 ACCTAATGGTTCAAAATAAGAGTACTC 57.332 33.333 15.41 15.41 46.05 2.59
2941 4988 4.513442 TCATTTGTCTTCGGACCTAATGG 58.487 43.478 14.76 0.00 43.85 3.16
2942 4989 6.051717 AGATCATTTGTCTTCGGACCTAATG 58.948 40.000 0.00 11.40 43.85 1.90
2943 4990 6.240549 AGATCATTTGTCTTCGGACCTAAT 57.759 37.500 0.00 0.00 43.85 1.73
2944 4991 5.677319 AGATCATTTGTCTTCGGACCTAA 57.323 39.130 0.00 0.00 43.85 2.69
2945 4992 5.661458 GAAGATCATTTGTCTTCGGACCTA 58.339 41.667 0.00 0.00 43.85 3.08
2946 4993 4.508662 GAAGATCATTTGTCTTCGGACCT 58.491 43.478 0.00 0.00 43.85 3.85
2947 4994 4.866682 GAAGATCATTTGTCTTCGGACC 57.133 45.455 0.00 0.00 43.85 4.46
2952 4999 5.356470 CAGAAGGGGAAGATCATTTGTCTTC 59.644 44.000 7.21 7.21 46.85 2.87
2953 5000 5.259632 CAGAAGGGGAAGATCATTTGTCTT 58.740 41.667 0.00 0.00 38.57 3.01
2954 5001 4.324874 CCAGAAGGGGAAGATCATTTGTCT 60.325 45.833 0.00 0.00 0.00 3.41
2955 5002 3.950395 CCAGAAGGGGAAGATCATTTGTC 59.050 47.826 0.00 0.00 0.00 3.18
2956 5003 3.334881 ACCAGAAGGGGAAGATCATTTGT 59.665 43.478 0.00 0.00 42.91 2.83
2957 5004 3.973425 ACCAGAAGGGGAAGATCATTTG 58.027 45.455 0.00 0.00 42.91 2.32
2958 5005 4.293368 AGAACCAGAAGGGGAAGATCATTT 59.707 41.667 0.00 0.00 42.91 2.32
2959 5006 3.854994 AGAACCAGAAGGGGAAGATCATT 59.145 43.478 0.00 0.00 42.91 2.57
2960 5007 3.468850 AGAACCAGAAGGGGAAGATCAT 58.531 45.455 0.00 0.00 42.91 2.45
2961 5008 2.921221 AGAACCAGAAGGGGAAGATCA 58.079 47.619 0.00 0.00 42.91 2.92
2962 5009 4.471747 ACTTAGAACCAGAAGGGGAAGATC 59.528 45.833 0.00 0.00 42.91 2.75
2963 5010 4.439860 ACTTAGAACCAGAAGGGGAAGAT 58.560 43.478 0.00 0.00 42.91 2.40
2964 5011 3.870559 ACTTAGAACCAGAAGGGGAAGA 58.129 45.455 0.00 0.00 42.91 2.87
2965 5012 5.024118 TCTACTTAGAACCAGAAGGGGAAG 58.976 45.833 0.00 0.00 42.91 3.46
2966 5013 4.776308 GTCTACTTAGAACCAGAAGGGGAA 59.224 45.833 0.00 0.00 42.91 3.97
2967 5014 4.045590 AGTCTACTTAGAACCAGAAGGGGA 59.954 45.833 0.00 0.00 42.91 4.81
2968 5015 4.354662 AGTCTACTTAGAACCAGAAGGGG 58.645 47.826 0.00 0.00 42.91 4.79
2969 5016 6.361768 AAAGTCTACTTAGAACCAGAAGGG 57.638 41.667 0.00 0.00 37.75 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.