Multiple sequence alignment - TraesCS1A01G082300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G082300 chr1A 100.000 2734 0 0 1 2734 65617747 65615014 0.000000e+00 5049.0
1 TraesCS1A01G082300 chr1A 89.423 104 11 0 2621 2724 50005245 50005142 6.140000e-27 132.0
2 TraesCS1A01G082300 chr1B 89.188 1970 96 41 111 2018 107371963 107370049 0.000000e+00 2350.0
3 TraesCS1A01G082300 chr1B 90.722 194 14 1 2152 2345 107363931 107363742 3.490000e-64 255.0
4 TraesCS1A01G082300 chr1B 100.000 35 0 0 2365 2399 107363741 107363707 6.320000e-07 65.8
5 TraesCS1A01G082300 chr1D 93.419 1398 55 16 646 2018 66685811 66684426 0.000000e+00 2037.0
6 TraesCS1A01G082300 chr1D 88.406 483 28 12 1 472 66688113 66687648 8.550000e-155 556.0
7 TraesCS1A01G082300 chr1D 91.429 280 21 2 2123 2399 66684276 66683997 5.520000e-102 381.0
8 TraesCS1A01G082300 chr1D 89.423 104 11 0 2621 2724 50972803 50972700 6.140000e-27 132.0
9 TraesCS1A01G082300 chr1D 90.000 100 7 1 2523 2619 270038134 270038233 2.860000e-25 126.0
10 TraesCS1A01G082300 chr2B 87.500 104 13 0 2621 2724 411975948 411976051 1.330000e-23 121.0
11 TraesCS1A01G082300 chr6B 85.321 109 16 0 2626 2734 150838100 150838208 2.230000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G082300 chr1A 65615014 65617747 2733 True 5049.000000 5049 100.000000 1 2734 1 chr1A.!!$R2 2733
1 TraesCS1A01G082300 chr1B 107370049 107371963 1914 True 2350.000000 2350 89.188000 111 2018 1 chr1B.!!$R1 1907
2 TraesCS1A01G082300 chr1D 66683997 66688113 4116 True 991.333333 2037 91.084667 1 2399 3 chr1D.!!$R2 2398

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
450 459 0.034756 ACGCCATAGCACAGTGACAA 59.965 50.0 4.15 0.0 39.83 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2018 3760 0.523072 CCTCCATGTCGGCAAACAAG 59.477 55.0 0.0 0.0 31.81 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.047844 CTGGACCTCTGCACCACG 60.048 66.667 0.00 0.00 0.00 4.94
41 43 6.866248 CCTCTGCACCACGTATTTTTATTTTT 59.134 34.615 0.00 0.00 0.00 1.94
42 44 7.061789 CCTCTGCACCACGTATTTTTATTTTTC 59.938 37.037 0.00 0.00 0.00 2.29
44 46 5.629849 TGCACCACGTATTTTTATTTTTCGG 59.370 36.000 0.00 0.00 0.00 4.30
94 96 6.017192 ACAAACACGTATAAAGTAAACACCCC 60.017 38.462 0.00 0.00 0.00 4.95
121 123 9.892130 AGATCTTCCGTAATCAAACTCTAATTT 57.108 29.630 0.00 0.00 0.00 1.82
148 150 0.445436 CTCTGTTGGCGTGCAAGATC 59.555 55.000 2.99 0.00 0.00 2.75
188 190 2.440539 AACGTTAGGCACTGTCAGAG 57.559 50.000 6.91 0.00 41.52 3.35
221 224 7.766278 ACATTGCTAAGTAGAGTAGTTGATTGG 59.234 37.037 0.00 0.00 0.00 3.16
344 349 1.218875 CCGCGTGAAGTGTACTTGCA 61.219 55.000 4.92 0.00 36.11 4.08
345 350 0.579630 CGCGTGAAGTGTACTTGCAA 59.420 50.000 1.35 0.00 36.11 4.08
347 356 1.333791 GCGTGAAGTGTACTTGCAACC 60.334 52.381 1.35 0.00 36.11 3.77
360 369 2.472909 GCAACCAGGAGCGCATACC 61.473 63.158 11.47 10.37 0.00 2.73
433 442 1.424403 TGACGTAGCACAATGGAACG 58.576 50.000 0.00 0.00 39.37 3.95
450 459 0.034756 ACGCCATAGCACAGTGACAA 59.965 50.000 4.15 0.00 39.83 3.18
451 460 0.443869 CGCCATAGCACAGTGACAAC 59.556 55.000 4.15 0.00 39.83 3.32
460 469 0.104304 ACAGTGACAACCTCCACGAC 59.896 55.000 0.00 0.00 38.26 4.34
482 1889 4.161001 ACGAATAACCAACCACTAGTAGGG 59.839 45.833 13.68 6.94 0.00 3.53
490 1897 0.383231 CCACTAGTAGGGCCGTTACG 59.617 60.000 1.81 0.00 0.00 3.18
495 1902 0.813821 AGTAGGGCCGTTACGTCTTC 59.186 55.000 1.81 0.00 0.00 2.87
510 1917 2.155732 CGTCTTCGTGAACAGAACCATG 59.844 50.000 0.00 0.00 0.00 3.66
528 1935 1.812235 TGCACTTGATAGCACAGTGG 58.188 50.000 18.41 6.80 35.53 4.00
529 1936 0.449388 GCACTTGATAGCACAGTGGC 59.551 55.000 18.41 10.91 35.53 5.01
530 1937 0.723414 CACTTGATAGCACAGTGGCG 59.277 55.000 1.84 0.00 39.27 5.69
531 1938 0.321671 ACTTGATAGCACAGTGGCGT 59.678 50.000 1.84 0.00 39.27 5.68
532 1939 0.723414 CTTGATAGCACAGTGGCGTG 59.277 55.000 1.84 0.00 40.00 5.34
533 1940 0.673333 TTGATAGCACAGTGGCGTGG 60.673 55.000 1.84 0.00 37.37 4.94
534 1941 1.815421 GATAGCACAGTGGCGTGGG 60.815 63.158 1.84 0.00 37.37 4.61
557 1964 1.805943 TGCTCACAATGAATGTCACGG 59.194 47.619 0.00 0.00 41.46 4.94
614 2021 2.959484 ATGGTGACCACGAGCCCTG 61.959 63.158 6.40 0.00 35.80 4.45
731 2432 1.254026 CATGATCCCATCCATGGTGC 58.746 55.000 12.58 0.00 46.65 5.01
828 2530 2.365617 TCACTCACTCACCTTCCTTCAC 59.634 50.000 0.00 0.00 0.00 3.18
830 2532 1.694150 CTCACTCACCTTCCTTCACCA 59.306 52.381 0.00 0.00 0.00 4.17
852 2554 4.920927 CACCAACGGGAAATGATAAACAAC 59.079 41.667 0.00 0.00 38.05 3.32
874 2576 1.518572 CTTGTGGCGCGTACCCTAG 60.519 63.158 8.43 2.09 0.00 3.02
928 2640 0.179100 CAGATGATCCGACGGCTGTT 60.179 55.000 9.66 0.00 0.00 3.16
931 2643 0.179100 ATGATCCGACGGCTGTTGAG 60.179 55.000 14.98 4.88 0.00 3.02
1052 2764 1.282653 CCCTCCCCTTCTTTCCCTCC 61.283 65.000 0.00 0.00 0.00 4.30
1059 2771 0.250513 CTTCTTTCCCTCCCTCACCG 59.749 60.000 0.00 0.00 0.00 4.94
1182 2896 6.899393 AACTTCCATTGCTTTGATACTTCA 57.101 33.333 0.00 0.00 0.00 3.02
1189 2903 9.716531 TCCATTGCTTTGATACTTCATAGATAG 57.283 33.333 0.00 0.00 34.04 2.08
1190 2904 8.449397 CCATTGCTTTGATACTTCATAGATAGC 58.551 37.037 0.00 0.00 34.04 2.97
1311 3030 4.475135 GGGGGCAGGAGCGAAGAC 62.475 72.222 0.00 0.00 43.41 3.01
1506 3237 0.798776 GGTCCATGCTCGACAACAAG 59.201 55.000 3.47 0.00 31.55 3.16
1562 3294 0.811616 GCTCCATCATCACCACCGAC 60.812 60.000 0.00 0.00 0.00 4.79
1639 3374 2.747989 CACTGCATGCAGATTTCAGAGT 59.252 45.455 45.50 23.55 46.30 3.24
1641 3376 2.355132 CTGCATGCAGATTTCAGAGTCC 59.645 50.000 38.90 0.00 46.30 3.85
1786 3524 4.197750 AGCTAGCTTGGAGTGATTTGATG 58.802 43.478 12.68 0.00 0.00 3.07
1802 3540 3.942377 ATGGATTGCCGCCACAGCA 62.942 57.895 0.00 0.00 38.44 4.41
1816 3554 3.749954 GCCACAGCATTAGGATGGATCTT 60.750 47.826 0.00 0.00 37.17 2.40
1817 3555 4.467769 CCACAGCATTAGGATGGATCTTT 58.532 43.478 0.00 0.00 37.17 2.52
1818 3556 4.277672 CCACAGCATTAGGATGGATCTTTG 59.722 45.833 0.00 0.00 37.17 2.77
1819 3557 5.128205 CACAGCATTAGGATGGATCTTTGA 58.872 41.667 0.00 0.00 37.17 2.69
1857 3595 6.422100 GCATGTTTTCCTTTTCTCTTCCTTTC 59.578 38.462 0.00 0.00 0.00 2.62
1919 3657 2.212652 TCCGATTCGCCAATCAATGAG 58.787 47.619 4.89 0.00 38.77 2.90
1921 3659 2.222678 CCGATTCGCCAATCAATGAGAG 59.777 50.000 4.89 0.00 38.77 3.20
2018 3760 3.634910 TGTCTTACTTTGGCAAAAGGTCC 59.365 43.478 17.89 1.99 46.01 4.46
2019 3761 3.889538 GTCTTACTTTGGCAAAAGGTCCT 59.110 43.478 17.89 0.00 46.01 3.85
2020 3762 4.341235 GTCTTACTTTGGCAAAAGGTCCTT 59.659 41.667 17.89 0.00 46.01 3.36
2021 3763 4.340950 TCTTACTTTGGCAAAAGGTCCTTG 59.659 41.667 17.89 2.21 46.01 3.61
2022 3764 2.466846 ACTTTGGCAAAAGGTCCTTGT 58.533 42.857 17.89 0.00 46.01 3.16
2023 3765 2.837591 ACTTTGGCAAAAGGTCCTTGTT 59.162 40.909 17.89 0.00 46.01 2.83
2024 3766 3.263170 ACTTTGGCAAAAGGTCCTTGTTT 59.737 39.130 17.89 0.00 46.01 2.83
2025 3767 2.977772 TGGCAAAAGGTCCTTGTTTG 57.022 45.000 4.45 8.23 35.74 2.93
2028 3770 1.851658 CAAAAGGTCCTTGTTTGCCG 58.148 50.000 4.45 0.00 0.00 5.69
2029 3771 1.407258 CAAAAGGTCCTTGTTTGCCGA 59.593 47.619 4.45 0.00 0.00 5.54
2036 3795 0.523072 CCTTGTTTGCCGACATGGAG 59.477 55.000 13.20 0.00 43.76 3.86
2037 3796 0.523072 CTTGTTTGCCGACATGGAGG 59.477 55.000 0.00 0.36 42.00 4.30
2061 3820 7.780271 AGGGGAAGAATCAATCCATTTACTTAC 59.220 37.037 7.29 0.00 37.46 2.34
2062 3821 7.255139 GGGGAAGAATCAATCCATTTACTTACG 60.255 40.741 7.29 0.00 37.46 3.18
2063 3822 7.497909 GGGAAGAATCAATCCATTTACTTACGA 59.502 37.037 7.29 0.00 37.46 3.43
2088 3906 4.599720 TGGATACCCCATTCATGTTTGA 57.400 40.909 0.00 0.00 40.82 2.69
2091 3909 4.956075 GGATACCCCATTCATGTTTGAAGT 59.044 41.667 0.00 0.00 44.75 3.01
2098 3916 7.453126 ACCCCATTCATGTTTGAAGTACATAAA 59.547 33.333 0.00 0.00 44.75 1.40
2099 3917 7.759433 CCCCATTCATGTTTGAAGTACATAAAC 59.241 37.037 10.75 10.75 44.75 2.01
2100 3918 7.484641 CCCATTCATGTTTGAAGTACATAAACG 59.515 37.037 12.10 0.00 44.75 3.60
2101 3919 8.233868 CCATTCATGTTTGAAGTACATAAACGA 58.766 33.333 12.10 5.03 44.75 3.85
2102 3920 9.605955 CATTCATGTTTGAAGTACATAAACGAA 57.394 29.630 12.10 10.85 44.75 3.85
2104 3922 8.373048 TCATGTTTGAAGTACATAAACGAACT 57.627 30.769 12.10 0.00 37.17 3.01
2105 3923 8.492748 TCATGTTTGAAGTACATAAACGAACTC 58.507 33.333 12.10 0.00 37.17 3.01
2106 3924 6.869473 TGTTTGAAGTACATAAACGAACTCG 58.131 36.000 12.10 0.00 46.33 4.18
2107 3925 6.074195 TGTTTGAAGTACATAAACGAACTCGG 60.074 38.462 3.88 0.00 44.95 4.63
2109 3927 2.523015 AGTACATAAACGAACTCGGCG 58.477 47.619 0.00 0.00 44.95 6.46
2110 3928 1.585214 GTACATAAACGAACTCGGCGG 59.415 52.381 7.21 0.00 44.95 6.13
2111 3929 0.037975 ACATAAACGAACTCGGCGGT 60.038 50.000 7.21 0.19 44.95 5.68
2112 3930 1.073177 CATAAACGAACTCGGCGGTT 58.927 50.000 7.21 10.42 44.95 4.44
2115 3933 2.647680 AAACGAACTCGGCGGTTCCA 62.648 55.000 25.00 0.98 44.95 3.53
2116 3934 2.356553 CGAACTCGGCGGTTCCAA 60.357 61.111 25.00 0.31 41.58 3.53
2117 3935 1.957186 CGAACTCGGCGGTTCCAAA 60.957 57.895 25.00 0.00 41.58 3.28
2118 3936 1.500512 CGAACTCGGCGGTTCCAAAA 61.501 55.000 25.00 0.00 41.58 2.44
2119 3937 0.664224 GAACTCGGCGGTTCCAAAAA 59.336 50.000 22.41 0.00 39.50 1.94
2148 3966 9.445786 AACATATAAACGAACTCAAACAAGTTG 57.554 29.630 0.00 0.00 39.55 3.16
2149 3967 8.617809 ACATATAAACGAACTCAAACAAGTTGT 58.382 29.630 1.64 1.64 39.55 3.32
2185 4003 7.673926 AGAAGCCATTTATTAAGGTCCTCAAAA 59.326 33.333 0.00 0.00 0.00 2.44
2193 4011 8.726870 TTATTAAGGTCCTCAAAAATACTCCG 57.273 34.615 0.00 0.00 0.00 4.63
2220 4040 0.888285 AAGAGCAACTCTGGCAGCAC 60.888 55.000 10.34 0.00 40.28 4.40
2231 4051 2.025037 TCTGGCAGCACATTCCCTAAAT 60.025 45.455 10.34 0.00 0.00 1.40
2234 4054 2.223572 GGCAGCACATTCCCTAAATTCG 60.224 50.000 0.00 0.00 0.00 3.34
2389 4209 9.699410 TCATATAAACTCCATTTCAACTCCAAT 57.301 29.630 0.00 0.00 0.00 3.16
2399 4219 5.484173 TTTCAACTCCAATATCGCATCAC 57.516 39.130 0.00 0.00 0.00 3.06
2400 4220 4.406648 TCAACTCCAATATCGCATCACT 57.593 40.909 0.00 0.00 0.00 3.41
2401 4221 4.371786 TCAACTCCAATATCGCATCACTC 58.628 43.478 0.00 0.00 0.00 3.51
2402 4222 3.393089 ACTCCAATATCGCATCACTCC 57.607 47.619 0.00 0.00 0.00 3.85
2403 4223 2.288457 ACTCCAATATCGCATCACTCCG 60.288 50.000 0.00 0.00 0.00 4.63
2404 4224 0.792640 CCAATATCGCATCACTCCGC 59.207 55.000 0.00 0.00 0.00 5.54
2405 4225 1.606480 CCAATATCGCATCACTCCGCT 60.606 52.381 0.00 0.00 0.00 5.52
2406 4226 1.723542 CAATATCGCATCACTCCGCTC 59.276 52.381 0.00 0.00 0.00 5.03
2407 4227 0.244994 ATATCGCATCACTCCGCTCC 59.755 55.000 0.00 0.00 0.00 4.70
2408 4228 0.823769 TATCGCATCACTCCGCTCCT 60.824 55.000 0.00 0.00 0.00 3.69
2409 4229 2.081425 ATCGCATCACTCCGCTCCTC 62.081 60.000 0.00 0.00 0.00 3.71
2410 4230 2.107953 GCATCACTCCGCTCCTCC 59.892 66.667 0.00 0.00 0.00 4.30
2411 4231 2.430610 GCATCACTCCGCTCCTCCT 61.431 63.158 0.00 0.00 0.00 3.69
2412 4232 1.109920 GCATCACTCCGCTCCTCCTA 61.110 60.000 0.00 0.00 0.00 2.94
2413 4233 0.958091 CATCACTCCGCTCCTCCTAG 59.042 60.000 0.00 0.00 0.00 3.02
2414 4234 0.553819 ATCACTCCGCTCCTCCTAGT 59.446 55.000 0.00 0.00 0.00 2.57
2415 4235 0.107116 TCACTCCGCTCCTCCTAGTC 60.107 60.000 0.00 0.00 0.00 2.59
2416 4236 1.104577 CACTCCGCTCCTCCTAGTCC 61.105 65.000 0.00 0.00 0.00 3.85
2417 4237 1.283381 ACTCCGCTCCTCCTAGTCCT 61.283 60.000 0.00 0.00 0.00 3.85
2418 4238 0.536460 CTCCGCTCCTCCTAGTCCTC 60.536 65.000 0.00 0.00 0.00 3.71
2419 4239 1.529713 CCGCTCCTCCTAGTCCTCC 60.530 68.421 0.00 0.00 0.00 4.30
2420 4240 1.894756 CGCTCCTCCTAGTCCTCCG 60.895 68.421 0.00 0.00 0.00 4.63
2421 4241 2.197605 GCTCCTCCTAGTCCTCCGC 61.198 68.421 0.00 0.00 0.00 5.54
2422 4242 1.534697 CTCCTCCTAGTCCTCCGCT 59.465 63.158 0.00 0.00 0.00 5.52
2423 4243 0.536460 CTCCTCCTAGTCCTCCGCTC 60.536 65.000 0.00 0.00 0.00 5.03
2424 4244 1.529713 CCTCCTAGTCCTCCGCTCC 60.530 68.421 0.00 0.00 0.00 4.70
2425 4245 1.534697 CTCCTAGTCCTCCGCTCCT 59.465 63.158 0.00 0.00 0.00 3.69
2426 4246 0.536460 CTCCTAGTCCTCCGCTCCTC 60.536 65.000 0.00 0.00 0.00 3.71
2427 4247 1.529713 CCTAGTCCTCCGCTCCTCC 60.530 68.421 0.00 0.00 0.00 4.30
2428 4248 1.534697 CTAGTCCTCCGCTCCTCCT 59.465 63.158 0.00 0.00 0.00 3.69
2429 4249 0.766131 CTAGTCCTCCGCTCCTCCTA 59.234 60.000 0.00 0.00 0.00 2.94
2430 4250 0.766131 TAGTCCTCCGCTCCTCCTAG 59.234 60.000 0.00 0.00 0.00 3.02
2431 4251 2.196229 TCCTCCGCTCCTCCTAGC 59.804 66.667 0.00 0.00 39.21 3.42
2432 4252 2.915137 CCTCCGCTCCTCCTAGCC 60.915 72.222 0.00 0.00 39.43 3.93
2433 4253 2.915137 CTCCGCTCCTCCTAGCCC 60.915 72.222 0.00 0.00 39.43 5.19
2434 4254 4.541648 TCCGCTCCTCCTAGCCCC 62.542 72.222 0.00 0.00 39.43 5.80
2435 4255 4.860881 CCGCTCCTCCTAGCCCCA 62.861 72.222 0.00 0.00 39.43 4.96
2436 4256 3.541713 CGCTCCTCCTAGCCCCAC 61.542 72.222 0.00 0.00 39.43 4.61
2437 4257 3.164977 GCTCCTCCTAGCCCCACC 61.165 72.222 0.00 0.00 36.45 4.61
2438 4258 2.840102 CTCCTCCTAGCCCCACCG 60.840 72.222 0.00 0.00 0.00 4.94
2439 4259 3.680196 TCCTCCTAGCCCCACCGT 61.680 66.667 0.00 0.00 0.00 4.83
2440 4260 2.687566 CCTCCTAGCCCCACCGTT 60.688 66.667 0.00 0.00 0.00 4.44
2441 4261 2.584608 CTCCTAGCCCCACCGTTG 59.415 66.667 0.00 0.00 0.00 4.10
2442 4262 3.006728 TCCTAGCCCCACCGTTGG 61.007 66.667 0.00 0.00 43.50 3.77
2448 4268 2.983592 CCCCACCGTTGGCAACTC 60.984 66.667 26.26 3.22 42.35 3.01
2449 4269 2.983592 CCCACCGTTGGCAACTCC 60.984 66.667 26.26 2.46 42.35 3.85
2450 4270 3.353836 CCACCGTTGGCAACTCCG 61.354 66.667 26.26 14.45 35.56 4.63
2475 4295 3.646976 CGGCCATCGCTGCTCATG 61.647 66.667 2.24 0.00 33.74 3.07
2476 4296 3.962421 GGCCATCGCTGCTCATGC 61.962 66.667 0.00 0.00 40.20 4.06
2477 4297 3.962421 GCCATCGCTGCTCATGCC 61.962 66.667 0.00 0.00 38.71 4.40
2478 4298 3.646976 CCATCGCTGCTCATGCCG 61.647 66.667 0.00 0.00 38.71 5.69
2479 4299 4.309347 CATCGCTGCTCATGCCGC 62.309 66.667 0.00 0.00 44.27 6.53
2483 4303 4.849329 GCTGCTCATGCCGCAAGC 62.849 66.667 9.69 9.69 46.43 4.01
2484 4304 4.189188 CTGCTCATGCCGCAAGCC 62.189 66.667 13.29 0.00 42.71 4.35
2486 4306 4.487412 GCTCATGCCGCAAGCCAC 62.487 66.667 5.85 0.00 42.71 5.01
2487 4307 2.749044 CTCATGCCGCAAGCCACT 60.749 61.111 0.00 0.00 42.71 4.00
2488 4308 2.747460 TCATGCCGCAAGCCACTC 60.747 61.111 0.00 0.00 42.71 3.51
2489 4309 3.818787 CATGCCGCAAGCCACTCC 61.819 66.667 0.00 0.00 42.71 3.85
2490 4310 4.349503 ATGCCGCAAGCCACTCCA 62.350 61.111 0.00 0.00 42.71 3.86
2493 4313 4.711949 CCGCAAGCCACTCCAGCT 62.712 66.667 0.00 0.00 44.19 4.24
2494 4314 2.265739 CGCAAGCCACTCCAGCTA 59.734 61.111 0.00 0.00 40.49 3.32
2495 4315 2.103042 CGCAAGCCACTCCAGCTAC 61.103 63.158 0.00 0.00 40.49 3.58
2496 4316 2.103042 GCAAGCCACTCCAGCTACG 61.103 63.158 0.00 0.00 40.49 3.51
2497 4317 1.448540 CAAGCCACTCCAGCTACGG 60.449 63.158 0.00 0.00 40.49 4.02
2498 4318 3.316573 AAGCCACTCCAGCTACGGC 62.317 63.158 0.00 0.00 40.49 5.68
2500 4320 3.449227 CCACTCCAGCTACGGCGA 61.449 66.667 16.62 0.00 44.37 5.54
2501 4321 2.202623 CACTCCAGCTACGGCGAC 60.203 66.667 16.62 1.94 44.37 5.19
2502 4322 3.450115 ACTCCAGCTACGGCGACC 61.450 66.667 16.62 0.25 44.37 4.79
2503 4323 3.449227 CTCCAGCTACGGCGACCA 61.449 66.667 16.62 0.00 44.37 4.02
2504 4324 3.701604 CTCCAGCTACGGCGACCAC 62.702 68.421 16.62 0.00 44.37 4.16
2505 4325 4.814294 CCAGCTACGGCGACCACC 62.814 72.222 16.62 0.00 44.37 4.61
2506 4326 4.063967 CAGCTACGGCGACCACCA 62.064 66.667 16.62 0.00 44.37 4.17
2507 4327 4.065281 AGCTACGGCGACCACCAC 62.065 66.667 16.62 0.00 44.37 4.16
2508 4328 4.367023 GCTACGGCGACCACCACA 62.367 66.667 16.62 0.00 0.00 4.17
2509 4329 2.431942 CTACGGCGACCACCACAC 60.432 66.667 16.62 0.00 0.00 3.82
2510 4330 3.927163 CTACGGCGACCACCACACC 62.927 68.421 16.62 0.00 0.00 4.16
2515 4335 4.016706 CGACCACCACACCCCCTC 62.017 72.222 0.00 0.00 0.00 4.30
2516 4336 2.529389 GACCACCACACCCCCTCT 60.529 66.667 0.00 0.00 0.00 3.69
2517 4337 2.529389 ACCACCACACCCCCTCTC 60.529 66.667 0.00 0.00 0.00 3.20
2518 4338 2.203998 CCACCACACCCCCTCTCT 60.204 66.667 0.00 0.00 0.00 3.10
2519 4339 1.847968 CCACCACACCCCCTCTCTT 60.848 63.158 0.00 0.00 0.00 2.85
2520 4340 0.546747 CCACCACACCCCCTCTCTTA 60.547 60.000 0.00 0.00 0.00 2.10
2521 4341 1.358152 CACCACACCCCCTCTCTTAA 58.642 55.000 0.00 0.00 0.00 1.85
2522 4342 1.003233 CACCACACCCCCTCTCTTAAC 59.997 57.143 0.00 0.00 0.00 2.01
2523 4343 0.618981 CCACACCCCCTCTCTTAACC 59.381 60.000 0.00 0.00 0.00 2.85
2524 4344 1.657804 CACACCCCCTCTCTTAACCT 58.342 55.000 0.00 0.00 0.00 3.50
2525 4345 1.279271 CACACCCCCTCTCTTAACCTG 59.721 57.143 0.00 0.00 0.00 4.00
2526 4346 0.912486 CACCCCCTCTCTTAACCTGG 59.088 60.000 0.00 0.00 0.00 4.45
2527 4347 0.253207 ACCCCCTCTCTTAACCTGGG 60.253 60.000 0.00 0.00 37.68 4.45
2528 4348 0.253207 CCCCCTCTCTTAACCTGGGT 60.253 60.000 0.00 0.00 36.26 4.51
2529 4349 1.009183 CCCCCTCTCTTAACCTGGGTA 59.991 57.143 0.00 0.00 36.26 3.69
2530 4350 2.563596 CCCCCTCTCTTAACCTGGGTAA 60.564 54.545 3.79 3.79 36.26 2.85
2531 4351 2.772515 CCCCTCTCTTAACCTGGGTAAG 59.227 54.545 22.86 22.86 36.26 2.34
2532 4352 2.170817 CCCTCTCTTAACCTGGGTAAGC 59.829 54.545 23.81 0.00 33.49 3.09
2533 4353 2.159085 CCTCTCTTAACCTGGGTAAGCG 60.159 54.545 23.81 18.94 0.00 4.68
2534 4354 2.758979 CTCTCTTAACCTGGGTAAGCGA 59.241 50.000 23.81 21.76 0.00 4.93
2535 4355 3.371965 TCTCTTAACCTGGGTAAGCGAT 58.628 45.455 23.81 0.00 0.00 4.58
2536 4356 3.132289 TCTCTTAACCTGGGTAAGCGATG 59.868 47.826 23.81 14.27 0.00 3.84
2537 4357 2.835764 TCTTAACCTGGGTAAGCGATGT 59.164 45.455 23.81 0.00 0.00 3.06
2538 4358 2.973694 TAACCTGGGTAAGCGATGTC 57.026 50.000 0.00 0.00 0.00 3.06
2539 4359 1.276622 AACCTGGGTAAGCGATGTCT 58.723 50.000 0.00 0.00 0.00 3.41
2540 4360 1.276622 ACCTGGGTAAGCGATGTCTT 58.723 50.000 0.00 0.00 0.00 3.01
2541 4361 1.628846 ACCTGGGTAAGCGATGTCTTT 59.371 47.619 0.00 0.00 0.00 2.52
2542 4362 2.835764 ACCTGGGTAAGCGATGTCTTTA 59.164 45.455 0.00 0.00 0.00 1.85
2543 4363 3.454812 ACCTGGGTAAGCGATGTCTTTAT 59.545 43.478 0.00 0.00 0.00 1.40
2544 4364 4.058817 CCTGGGTAAGCGATGTCTTTATC 58.941 47.826 0.00 0.00 0.00 1.75
2545 4365 4.442893 CCTGGGTAAGCGATGTCTTTATCA 60.443 45.833 0.00 0.00 0.00 2.15
2546 4366 4.693283 TGGGTAAGCGATGTCTTTATCAG 58.307 43.478 0.00 0.00 0.00 2.90
2547 4367 4.404394 TGGGTAAGCGATGTCTTTATCAGA 59.596 41.667 0.00 0.00 0.00 3.27
2548 4368 5.070446 TGGGTAAGCGATGTCTTTATCAGAT 59.930 40.000 0.00 0.00 32.60 2.90
2549 4369 5.635700 GGGTAAGCGATGTCTTTATCAGATC 59.364 44.000 0.00 0.00 32.60 2.75
2550 4370 6.451393 GGTAAGCGATGTCTTTATCAGATCT 58.549 40.000 0.00 0.00 32.60 2.75
2551 4371 6.584563 GGTAAGCGATGTCTTTATCAGATCTC 59.415 42.308 0.00 0.00 32.60 2.75
2552 4372 6.403866 AAGCGATGTCTTTATCAGATCTCT 57.596 37.500 0.00 0.00 32.60 3.10
2553 4373 5.771469 AGCGATGTCTTTATCAGATCTCTG 58.229 41.667 0.00 0.56 45.08 3.35
2554 4374 4.385447 GCGATGTCTTTATCAGATCTCTGC 59.615 45.833 2.21 0.00 43.46 4.26
2555 4375 5.771469 CGATGTCTTTATCAGATCTCTGCT 58.229 41.667 2.21 0.00 43.46 4.24
2556 4376 6.215121 CGATGTCTTTATCAGATCTCTGCTT 58.785 40.000 2.21 0.00 43.46 3.91
2557 4377 6.700960 CGATGTCTTTATCAGATCTCTGCTTT 59.299 38.462 2.21 0.00 43.46 3.51
2558 4378 7.306690 CGATGTCTTTATCAGATCTCTGCTTTG 60.307 40.741 2.21 0.00 43.46 2.77
2559 4379 6.939622 TGTCTTTATCAGATCTCTGCTTTGA 58.060 36.000 2.21 0.00 43.46 2.69
2560 4380 7.040494 TGTCTTTATCAGATCTCTGCTTTGAG 58.960 38.462 2.21 0.00 43.46 3.02
2561 4381 7.093596 TGTCTTTATCAGATCTCTGCTTTGAGA 60.094 37.037 2.21 7.00 45.71 3.27
2562 4382 7.436080 GTCTTTATCAGATCTCTGCTTTGAGAG 59.564 40.741 2.21 0.00 44.98 3.20
2567 4387 0.901124 TCTCTGCTTTGAGAGAGGCC 59.099 55.000 0.00 0.00 42.95 5.19
2568 4388 0.612229 CTCTGCTTTGAGAGAGGCCA 59.388 55.000 5.01 0.00 41.95 5.36
2569 4389 1.209990 CTCTGCTTTGAGAGAGGCCAT 59.790 52.381 5.01 0.00 41.95 4.40
2570 4390 1.065636 TCTGCTTTGAGAGAGGCCATG 60.066 52.381 5.01 0.00 0.00 3.66
2571 4391 0.679002 TGCTTTGAGAGAGGCCATGC 60.679 55.000 5.01 0.00 0.00 4.06
2582 4402 1.893062 GGCCATGCCTTTGAAGACC 59.107 57.895 0.00 0.00 46.69 3.85
2583 4403 1.508088 GCCATGCCTTTGAAGACCG 59.492 57.895 0.00 0.00 0.00 4.79
2584 4404 1.508088 CCATGCCTTTGAAGACCGC 59.492 57.895 0.00 0.00 0.00 5.68
2585 4405 1.243342 CCATGCCTTTGAAGACCGCA 61.243 55.000 0.00 0.00 0.00 5.69
2586 4406 0.813184 CATGCCTTTGAAGACCGCAT 59.187 50.000 0.00 0.00 40.69 4.73
2587 4407 1.098050 ATGCCTTTGAAGACCGCATC 58.902 50.000 0.00 0.00 35.28 3.91
2588 4408 0.036732 TGCCTTTGAAGACCGCATCT 59.963 50.000 0.00 0.00 40.46 2.90
2589 4409 0.449388 GCCTTTGAAGACCGCATCTG 59.551 55.000 0.00 0.00 37.88 2.90
2590 4410 1.089920 CCTTTGAAGACCGCATCTGG 58.910 55.000 0.00 0.00 37.88 3.86
2591 4411 0.449388 CTTTGAAGACCGCATCTGGC 59.551 55.000 0.00 0.00 37.88 4.85
2592 4412 0.250684 TTTGAAGACCGCATCTGGCA 60.251 50.000 0.00 0.00 45.17 4.92
2593 4413 0.035152 TTGAAGACCGCATCTGGCAT 60.035 50.000 0.00 0.00 45.17 4.40
2594 4414 0.035152 TGAAGACCGCATCTGGCATT 60.035 50.000 0.00 0.00 45.17 3.56
2595 4415 0.659957 GAAGACCGCATCTGGCATTC 59.340 55.000 0.00 0.00 45.17 2.67
2596 4416 0.749454 AAGACCGCATCTGGCATTCC 60.749 55.000 0.00 0.00 45.17 3.01
2597 4417 2.124151 ACCGCATCTGGCATTCCC 60.124 61.111 0.00 0.00 45.17 3.97
2598 4418 2.194056 CCGCATCTGGCATTCCCT 59.806 61.111 0.00 0.00 45.17 4.20
2599 4419 2.191513 CCGCATCTGGCATTCCCTG 61.192 63.158 0.00 0.00 45.17 4.45
2600 4420 1.153107 CGCATCTGGCATTCCCTGA 60.153 57.895 0.00 0.00 45.17 3.86
2601 4421 0.749091 CGCATCTGGCATTCCCTGAA 60.749 55.000 0.00 0.00 43.70 3.02
2602 4422 1.477553 GCATCTGGCATTCCCTGAAA 58.522 50.000 0.00 0.00 43.70 2.69
2603 4423 1.135721 GCATCTGGCATTCCCTGAAAC 59.864 52.381 0.00 0.00 43.70 2.78
2604 4424 1.753073 CATCTGGCATTCCCTGAAACC 59.247 52.381 0.00 0.00 43.70 3.27
2605 4425 0.322456 TCTGGCATTCCCTGAAACCG 60.322 55.000 0.00 0.00 38.47 4.44
2606 4426 0.322456 CTGGCATTCCCTGAAACCGA 60.322 55.000 0.00 0.00 34.66 4.69
2607 4427 0.331278 TGGCATTCCCTGAAACCGAT 59.669 50.000 0.00 0.00 0.00 4.18
2608 4428 1.025041 GGCATTCCCTGAAACCGATC 58.975 55.000 0.00 0.00 0.00 3.69
2609 4429 1.681780 GGCATTCCCTGAAACCGATCA 60.682 52.381 0.00 0.00 0.00 2.92
2610 4430 2.091541 GCATTCCCTGAAACCGATCAA 58.908 47.619 0.00 0.00 0.00 2.57
2611 4431 2.159379 GCATTCCCTGAAACCGATCAAC 60.159 50.000 0.00 0.00 0.00 3.18
2612 4432 3.347216 CATTCCCTGAAACCGATCAACT 58.653 45.455 0.00 0.00 0.00 3.16
2613 4433 3.502123 TTCCCTGAAACCGATCAACTT 57.498 42.857 0.00 0.00 0.00 2.66
2614 4434 3.053831 TCCCTGAAACCGATCAACTTC 57.946 47.619 0.00 0.00 0.00 3.01
2615 4435 2.370519 TCCCTGAAACCGATCAACTTCA 59.629 45.455 0.00 0.00 0.00 3.02
2616 4436 2.484264 CCCTGAAACCGATCAACTTCAC 59.516 50.000 0.00 0.00 0.00 3.18
2617 4437 2.157668 CCTGAAACCGATCAACTTCACG 59.842 50.000 0.00 0.00 0.00 4.35
2622 4442 0.796312 CCGATCAACTTCACGGTTGG 59.204 55.000 7.37 0.00 44.52 3.77
2623 4443 0.165944 CGATCAACTTCACGGTTGGC 59.834 55.000 7.37 1.00 44.52 4.52
2624 4444 0.521735 GATCAACTTCACGGTTGGCC 59.478 55.000 0.00 0.00 44.52 5.36
2636 4456 1.886886 GGTTGGCCGAGTTTACAAGA 58.113 50.000 0.00 0.00 0.00 3.02
2637 4457 2.433436 GGTTGGCCGAGTTTACAAGAT 58.567 47.619 0.00 0.00 0.00 2.40
2638 4458 2.418976 GGTTGGCCGAGTTTACAAGATC 59.581 50.000 0.00 0.00 0.00 2.75
2639 4459 2.396590 TGGCCGAGTTTACAAGATCC 57.603 50.000 0.00 0.00 0.00 3.36
2640 4460 1.626321 TGGCCGAGTTTACAAGATCCA 59.374 47.619 0.00 0.00 0.00 3.41
2641 4461 2.039216 TGGCCGAGTTTACAAGATCCAA 59.961 45.455 0.00 0.00 0.00 3.53
2642 4462 2.678336 GGCCGAGTTTACAAGATCCAAG 59.322 50.000 0.00 0.00 0.00 3.61
2643 4463 3.596214 GCCGAGTTTACAAGATCCAAGA 58.404 45.455 0.00 0.00 0.00 3.02
2644 4464 4.192317 GCCGAGTTTACAAGATCCAAGAT 58.808 43.478 0.00 0.00 0.00 2.40
2645 4465 4.271291 GCCGAGTTTACAAGATCCAAGATC 59.729 45.833 0.00 0.00 0.00 2.75
2646 4466 4.811557 CCGAGTTTACAAGATCCAAGATCC 59.188 45.833 0.99 0.00 0.00 3.36
2647 4467 4.504461 CGAGTTTACAAGATCCAAGATCCG 59.496 45.833 0.99 0.00 0.00 4.18
2648 4468 5.420409 GAGTTTACAAGATCCAAGATCCGT 58.580 41.667 0.99 2.49 0.00 4.69
2649 4469 5.420409 AGTTTACAAGATCCAAGATCCGTC 58.580 41.667 0.99 0.00 0.00 4.79
2650 4470 5.187967 AGTTTACAAGATCCAAGATCCGTCT 59.812 40.000 0.99 0.00 35.82 4.18
2651 4471 3.810310 ACAAGATCCAAGATCCGTCTC 57.190 47.619 0.99 0.00 32.15 3.36
2652 4472 3.099905 ACAAGATCCAAGATCCGTCTCA 58.900 45.455 0.99 0.00 32.15 3.27
2653 4473 3.118956 ACAAGATCCAAGATCCGTCTCAC 60.119 47.826 0.99 0.00 32.15 3.51
2654 4474 1.678627 AGATCCAAGATCCGTCTCACG 59.321 52.381 0.99 0.00 42.11 4.35
2664 4484 3.631714 CGTCTCACGGAGGAATCAG 57.368 57.895 1.76 0.00 38.08 2.90
2665 4485 0.811915 CGTCTCACGGAGGAATCAGT 59.188 55.000 1.76 0.00 38.08 3.41
2666 4486 2.014857 CGTCTCACGGAGGAATCAGTA 58.985 52.381 1.76 0.00 38.08 2.74
2667 4487 2.032302 CGTCTCACGGAGGAATCAGTAG 59.968 54.545 1.76 0.00 38.08 2.57
2668 4488 2.359531 GTCTCACGGAGGAATCAGTAGG 59.640 54.545 1.76 0.00 0.00 3.18
2669 4489 2.025226 TCTCACGGAGGAATCAGTAGGT 60.025 50.000 1.76 0.00 0.00 3.08
2670 4490 3.201487 TCTCACGGAGGAATCAGTAGGTA 59.799 47.826 1.76 0.00 0.00 3.08
2671 4491 3.285484 TCACGGAGGAATCAGTAGGTAC 58.715 50.000 0.00 0.00 0.00 3.34
2672 4492 3.021695 CACGGAGGAATCAGTAGGTACA 58.978 50.000 0.00 0.00 0.00 2.90
2673 4493 3.446161 CACGGAGGAATCAGTAGGTACAA 59.554 47.826 0.00 0.00 0.00 2.41
2674 4494 4.099573 CACGGAGGAATCAGTAGGTACAAT 59.900 45.833 0.00 0.00 0.00 2.71
2675 4495 4.715297 ACGGAGGAATCAGTAGGTACAATT 59.285 41.667 0.00 0.00 0.00 2.32
2676 4496 5.163437 ACGGAGGAATCAGTAGGTACAATTC 60.163 44.000 0.00 6.69 33.51 2.17
2677 4497 5.069251 CGGAGGAATCAGTAGGTACAATTCT 59.931 44.000 0.00 0.00 34.15 2.40
2678 4498 6.407074 CGGAGGAATCAGTAGGTACAATTCTT 60.407 42.308 0.00 7.13 34.15 2.52
2679 4499 6.987404 GGAGGAATCAGTAGGTACAATTCTTC 59.013 42.308 13.42 13.42 36.78 2.87
2680 4500 7.147637 GGAGGAATCAGTAGGTACAATTCTTCT 60.148 40.741 17.39 8.80 37.17 2.85
2681 4501 7.787028 AGGAATCAGTAGGTACAATTCTTCTC 58.213 38.462 0.00 0.00 34.15 2.87
2682 4502 7.621683 AGGAATCAGTAGGTACAATTCTTCTCT 59.378 37.037 0.00 0.00 34.15 3.10
2683 4503 7.923878 GGAATCAGTAGGTACAATTCTTCTCTC 59.076 40.741 0.00 0.00 34.15 3.20
2684 4504 6.438259 TCAGTAGGTACAATTCTTCTCTCG 57.562 41.667 0.00 0.00 0.00 4.04
2685 4505 5.944599 TCAGTAGGTACAATTCTTCTCTCGT 59.055 40.000 0.00 0.00 0.00 4.18
2686 4506 6.030849 CAGTAGGTACAATTCTTCTCTCGTG 58.969 44.000 0.00 0.00 0.00 4.35
2687 4507 3.851098 AGGTACAATTCTTCTCTCGTGC 58.149 45.455 0.00 0.00 0.00 5.34
2688 4508 3.511934 AGGTACAATTCTTCTCTCGTGCT 59.488 43.478 0.00 0.00 0.00 4.40
2689 4509 4.021016 AGGTACAATTCTTCTCTCGTGCTT 60.021 41.667 0.00 0.00 0.00 3.91
2690 4510 4.327627 GGTACAATTCTTCTCTCGTGCTTC 59.672 45.833 0.00 0.00 0.00 3.86
2691 4511 2.989840 ACAATTCTTCTCTCGTGCTTCG 59.010 45.455 0.00 0.00 41.41 3.79
2692 4512 2.285827 ATTCTTCTCTCGTGCTTCGG 57.714 50.000 2.56 0.00 40.32 4.30
2693 4513 1.244816 TTCTTCTCTCGTGCTTCGGA 58.755 50.000 2.56 0.00 40.32 4.55
2694 4514 0.805614 TCTTCTCTCGTGCTTCGGAG 59.194 55.000 0.00 0.00 40.32 4.63
2695 4515 0.179150 CTTCTCTCGTGCTTCGGAGG 60.179 60.000 0.00 0.00 40.32 4.30
2696 4516 0.608308 TTCTCTCGTGCTTCGGAGGA 60.608 55.000 0.00 0.00 40.32 3.71
2697 4517 0.608308 TCTCTCGTGCTTCGGAGGAA 60.608 55.000 0.00 0.00 40.32 3.36
2708 4528 2.751166 TCGGAGGAAGAGCTTCTTTG 57.249 50.000 9.82 0.91 36.73 2.77
2709 4529 1.971357 TCGGAGGAAGAGCTTCTTTGT 59.029 47.619 9.82 0.00 36.73 2.83
2710 4530 2.368875 TCGGAGGAAGAGCTTCTTTGTT 59.631 45.455 9.82 0.00 36.73 2.83
2711 4531 2.739379 CGGAGGAAGAGCTTCTTTGTTC 59.261 50.000 9.82 2.01 36.73 3.18
2712 4532 3.744660 GGAGGAAGAGCTTCTTTGTTCA 58.255 45.455 9.82 0.00 36.73 3.18
2713 4533 4.137543 GGAGGAAGAGCTTCTTTGTTCAA 58.862 43.478 9.82 0.00 36.73 2.69
2714 4534 4.580580 GGAGGAAGAGCTTCTTTGTTCAAA 59.419 41.667 9.82 0.00 36.73 2.69
2715 4535 5.067805 GGAGGAAGAGCTTCTTTGTTCAAAA 59.932 40.000 9.82 0.00 36.73 2.44
2716 4536 6.239148 GGAGGAAGAGCTTCTTTGTTCAAAAT 60.239 38.462 9.82 0.00 36.73 1.82
2717 4537 7.117285 AGGAAGAGCTTCTTTGTTCAAAATT 57.883 32.000 9.82 0.00 36.73 1.82
2718 4538 7.559486 AGGAAGAGCTTCTTTGTTCAAAATTT 58.441 30.769 9.82 0.00 36.73 1.82
2719 4539 8.695456 AGGAAGAGCTTCTTTGTTCAAAATTTA 58.305 29.630 9.82 0.00 36.73 1.40
2720 4540 8.972349 GGAAGAGCTTCTTTGTTCAAAATTTAG 58.028 33.333 9.82 0.00 36.73 1.85
2721 4541 9.736023 GAAGAGCTTCTTTGTTCAAAATTTAGA 57.264 29.630 3.06 0.00 36.73 2.10
2725 4545 9.875691 AGCTTCTTTGTTCAAAATTTAGAAACT 57.124 25.926 0.00 0.00 0.00 2.66
2726 4546 9.906111 GCTTCTTTGTTCAAAATTTAGAAACTG 57.094 29.630 0.00 0.00 0.00 3.16
2729 4549 9.921637 TCTTTGTTCAAAATTTAGAAACTGTGT 57.078 25.926 0.00 0.00 0.00 3.72
2730 4550 9.956797 CTTTGTTCAAAATTTAGAAACTGTGTG 57.043 29.630 0.00 0.00 0.00 3.82
2731 4551 9.698309 TTTGTTCAAAATTTAGAAACTGTGTGA 57.302 25.926 0.00 0.00 0.00 3.58
2732 4552 9.868277 TTGTTCAAAATTTAGAAACTGTGTGAT 57.132 25.926 0.00 0.00 0.00 3.06
2733 4553 9.868277 TGTTCAAAATTTAGAAACTGTGTGATT 57.132 25.926 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 5.560966 AATAAAAATACGTGGTGCAGAGG 57.439 39.130 0.00 0.00 0.00 3.69
67 69 8.720562 GGGTGTTTACTTTATACGTGTTTGTAT 58.279 33.333 0.00 0.00 38.54 2.29
68 70 7.172361 GGGGTGTTTACTTTATACGTGTTTGTA 59.828 37.037 0.00 0.00 0.00 2.41
69 71 6.017192 GGGGTGTTTACTTTATACGTGTTTGT 60.017 38.462 0.00 0.00 0.00 2.83
70 72 6.017275 TGGGGTGTTTACTTTATACGTGTTTG 60.017 38.462 0.00 0.00 0.00 2.93
71 73 6.060788 TGGGGTGTTTACTTTATACGTGTTT 58.939 36.000 0.00 0.00 0.00 2.83
72 74 5.619220 TGGGGTGTTTACTTTATACGTGTT 58.381 37.500 0.00 0.00 0.00 3.32
73 75 5.011943 TCTGGGGTGTTTACTTTATACGTGT 59.988 40.000 0.00 0.00 0.00 4.49
74 76 5.481105 TCTGGGGTGTTTACTTTATACGTG 58.519 41.667 0.00 0.00 0.00 4.49
75 77 5.743636 TCTGGGGTGTTTACTTTATACGT 57.256 39.130 0.00 0.00 0.00 3.57
76 78 6.579865 AGATCTGGGGTGTTTACTTTATACG 58.420 40.000 0.00 0.00 0.00 3.06
77 79 7.498239 GGAAGATCTGGGGTGTTTACTTTATAC 59.502 40.741 0.00 0.00 0.00 1.47
94 96 8.879342 ATTAGAGTTTGATTACGGAAGATCTG 57.121 34.615 0.00 0.00 0.00 2.90
121 123 1.946768 CACGCCAACAGAGGAAAAGAA 59.053 47.619 0.00 0.00 0.00 2.52
123 125 0.040067 GCACGCCAACAGAGGAAAAG 60.040 55.000 0.00 0.00 0.00 2.27
127 129 1.597854 CTTGCACGCCAACAGAGGA 60.598 57.895 0.00 0.00 0.00 3.71
132 134 1.236616 CCTGATCTTGCACGCCAACA 61.237 55.000 0.00 0.00 0.00 3.33
148 150 5.116882 GTTTGGTAGTAAGATAGGTGCCTG 58.883 45.833 0.12 0.00 0.00 4.85
188 190 5.848406 ACTCTACTTAGCAATGTCATAGCC 58.152 41.667 0.00 0.00 0.00 3.93
271 274 1.860078 CACCGCGAGAGGTTTGAAC 59.140 57.895 8.23 0.00 43.00 3.18
302 307 4.142752 GCCGGCGAGGGTATATTAAAATTC 60.143 45.833 12.58 0.00 41.48 2.17
344 349 2.180159 AACGGTATGCGCTCCTGGTT 62.180 55.000 9.73 4.89 0.00 3.67
345 350 2.573609 GAACGGTATGCGCTCCTGGT 62.574 60.000 9.73 0.00 0.00 4.00
347 356 1.153647 TGAACGGTATGCGCTCCTG 60.154 57.895 9.73 3.76 0.00 3.86
360 369 1.482621 CGGATCTGGATGCGTGAACG 61.483 60.000 14.60 0.00 45.59 3.95
433 442 0.804989 GGTTGTCACTGTGCTATGGC 59.195 55.000 2.12 0.00 39.26 4.40
450 459 1.259609 TGGTTATTCGTCGTGGAGGT 58.740 50.000 0.00 0.00 0.00 3.85
451 460 1.997606 GTTGGTTATTCGTCGTGGAGG 59.002 52.381 0.00 0.00 0.00 4.30
460 469 4.690122 CCCTACTAGTGGTTGGTTATTCG 58.310 47.826 5.39 0.00 38.79 3.34
490 1897 2.096218 GCATGGTTCTGTTCACGAAGAC 60.096 50.000 0.00 0.00 0.00 3.01
495 1902 1.229428 AGTGCATGGTTCTGTTCACG 58.771 50.000 0.00 0.00 0.00 4.35
510 1917 0.449388 GCCACTGTGCTATCAAGTGC 59.551 55.000 1.29 0.00 0.00 4.40
528 1935 2.703798 ATTGTGAGCATGCCCACGC 61.704 57.895 24.83 17.82 36.15 5.34
529 1936 1.138036 CATTGTGAGCATGCCCACG 59.862 57.895 24.83 9.30 36.15 4.94
530 1937 0.889994 TTCATTGTGAGCATGCCCAC 59.110 50.000 24.04 24.04 0.00 4.61
531 1938 1.478916 CATTCATTGTGAGCATGCCCA 59.521 47.619 15.66 5.73 0.00 5.36
532 1939 1.479323 ACATTCATTGTGAGCATGCCC 59.521 47.619 15.66 2.04 37.11 5.36
533 1940 2.164827 TGACATTCATTGTGAGCATGCC 59.835 45.455 15.66 6.65 39.18 4.40
534 1941 3.176708 GTGACATTCATTGTGAGCATGC 58.823 45.455 10.51 10.51 39.18 4.06
540 1947 1.073125 ACCCCGTGACATTCATTGTGA 59.927 47.619 0.00 0.00 39.18 3.58
575 1982 4.222847 GCAGGTCGGGTCGGATCC 62.223 72.222 0.00 0.00 0.00 3.36
576 1983 4.222847 GGCAGGTCGGGTCGGATC 62.223 72.222 0.00 0.00 0.00 3.36
614 2021 1.431036 GTACGTACGTGAGGAGGGC 59.569 63.158 30.25 6.72 33.08 5.19
615 2022 1.717937 CGTACGTACGTGAGGAGGG 59.282 63.158 33.95 8.33 44.13 4.30
744 2445 1.220169 CCGCGAATGATGAGGAGCAG 61.220 60.000 8.23 0.00 0.00 4.24
794 2496 5.576384 GTGAGTGAGTGAGAACAGAATCATC 59.424 44.000 0.00 0.00 0.00 2.92
828 2530 3.508012 TGTTTATCATTTCCCGTTGGTGG 59.492 43.478 0.00 0.00 0.00 4.61
830 2532 4.021807 GGTTGTTTATCATTTCCCGTTGGT 60.022 41.667 0.00 0.00 0.00 3.67
852 2554 2.813908 GTACGCGCCACAAGAGGG 60.814 66.667 5.73 0.00 0.00 4.30
928 2640 1.514553 CGCTGCATGTCTCTCCTCA 59.485 57.895 0.00 0.00 0.00 3.86
931 2643 0.809241 CTTCCGCTGCATGTCTCTCC 60.809 60.000 0.00 0.00 0.00 3.71
987 2699 1.307866 ACAGGATGGGTAGGGGTGG 60.308 63.158 0.00 0.00 43.62 4.61
1137 2851 2.099756 TCTCTCTCTGTGTGTGTGTGTG 59.900 50.000 0.00 0.00 0.00 3.82
1138 2852 2.379005 TCTCTCTCTGTGTGTGTGTGT 58.621 47.619 0.00 0.00 0.00 3.72
1139 2853 3.443099 TTCTCTCTCTGTGTGTGTGTG 57.557 47.619 0.00 0.00 0.00 3.82
1140 2854 3.449018 AGTTTCTCTCTCTGTGTGTGTGT 59.551 43.478 0.00 0.00 0.00 3.72
1141 2855 4.052159 AGTTTCTCTCTCTGTGTGTGTG 57.948 45.455 0.00 0.00 0.00 3.82
1142 2856 4.442192 GGAAGTTTCTCTCTCTGTGTGTGT 60.442 45.833 0.00 0.00 0.00 3.72
1143 2857 4.054671 GGAAGTTTCTCTCTCTGTGTGTG 58.945 47.826 0.00 0.00 0.00 3.82
1190 2904 4.767409 TGGTATGTCTAGCTAGGCAGTATG 59.233 45.833 30.12 0.02 41.79 2.39
1266 2985 2.124403 GGGCTGAGGATGGTGCAG 60.124 66.667 0.00 0.00 0.00 4.41
1296 3015 3.672295 CTGGTCTTCGCTCCTGCCC 62.672 68.421 0.00 0.00 35.36 5.36
1330 3049 2.308039 GCGTCTTCTTGCCGTCGTT 61.308 57.895 0.00 0.00 0.00 3.85
1506 3237 2.266055 CTGTCGAGGACCTTGGCC 59.734 66.667 11.00 0.00 0.00 5.36
1584 3316 5.651387 AGTATGTACTGGATCGATGATGG 57.349 43.478 0.54 0.00 34.72 3.51
1639 3374 1.746615 GCAGATTGAGCGCCAAGGA 60.747 57.895 2.29 0.00 38.31 3.36
1641 3376 1.022982 TCTGCAGATTGAGCGCCAAG 61.023 55.000 13.74 0.00 38.31 3.61
1681 3416 5.051153 ACAAGAAGAAAACGGAGAAGAGTC 58.949 41.667 0.00 0.00 0.00 3.36
1700 3436 4.381292 GGGATTCATTTCAGGCTCAACAAG 60.381 45.833 0.00 0.00 0.00 3.16
1802 3540 9.244292 CAATGATCATCAAAGATCCATCCTAAT 57.756 33.333 9.06 0.00 42.95 1.73
1816 3554 3.905968 ACATGCCCTCAATGATCATCAA 58.094 40.909 9.06 0.00 0.00 2.57
1817 3555 3.588210 ACATGCCCTCAATGATCATCA 57.412 42.857 9.06 1.62 0.00 3.07
1818 3556 4.931661 AAACATGCCCTCAATGATCATC 57.068 40.909 9.06 0.00 0.00 2.92
1819 3557 4.100498 GGAAAACATGCCCTCAATGATCAT 59.900 41.667 1.18 1.18 0.00 2.45
1857 3595 3.389002 TCCATATCCATCTGTGACACCAG 59.611 47.826 2.45 1.12 0.00 4.00
1919 3657 4.216472 GTCCCACATCTTCAAAAACTCCTC 59.784 45.833 0.00 0.00 0.00 3.71
1921 3659 3.255888 GGTCCCACATCTTCAAAAACTCC 59.744 47.826 0.00 0.00 0.00 3.85
2018 3760 0.523072 CCTCCATGTCGGCAAACAAG 59.477 55.000 0.00 0.00 31.81 3.16
2019 3761 0.893270 CCCTCCATGTCGGCAAACAA 60.893 55.000 0.00 0.00 31.81 2.83
2020 3762 1.303236 CCCTCCATGTCGGCAAACA 60.303 57.895 0.00 0.00 33.14 2.83
2021 3763 2.046285 CCCCTCCATGTCGGCAAAC 61.046 63.158 0.00 0.00 33.14 2.93
2022 3764 1.784301 TTCCCCTCCATGTCGGCAAA 61.784 55.000 0.00 0.00 33.14 3.68
2023 3765 2.196997 CTTCCCCTCCATGTCGGCAA 62.197 60.000 0.00 0.00 33.14 4.52
2024 3766 2.609299 TTCCCCTCCATGTCGGCA 60.609 61.111 0.00 0.00 33.14 5.69
2025 3767 1.910580 TTCTTCCCCTCCATGTCGGC 61.911 60.000 0.00 0.00 33.14 5.54
2026 3768 0.839946 ATTCTTCCCCTCCATGTCGG 59.160 55.000 0.00 0.00 0.00 4.79
2027 3769 1.486310 TGATTCTTCCCCTCCATGTCG 59.514 52.381 0.00 0.00 0.00 4.35
2028 3770 3.652057 TTGATTCTTCCCCTCCATGTC 57.348 47.619 0.00 0.00 0.00 3.06
2029 3771 3.117360 GGATTGATTCTTCCCCTCCATGT 60.117 47.826 0.00 0.00 0.00 3.21
2036 3795 7.255139 CGTAAGTAAATGGATTGATTCTTCCCC 60.255 40.741 4.44 0.00 0.00 4.81
2037 3796 7.497909 TCGTAAGTAAATGGATTGATTCTTCCC 59.502 37.037 4.44 0.00 39.48 3.97
2088 3906 2.919229 CGCCGAGTTCGTTTATGTACTT 59.081 45.455 0.48 0.00 37.74 2.24
2091 3909 1.202114 ACCGCCGAGTTCGTTTATGTA 59.798 47.619 0.48 0.00 37.74 2.29
2098 3916 2.647680 TTTGGAACCGCCGAGTTCGT 62.648 55.000 10.76 0.00 45.82 3.85
2099 3917 1.500512 TTTTGGAACCGCCGAGTTCG 61.501 55.000 10.76 0.00 45.82 3.95
2100 3918 0.664224 TTTTTGGAACCGCCGAGTTC 59.336 50.000 9.15 9.15 44.45 3.01
2101 3919 2.796500 TTTTTGGAACCGCCGAGTT 58.204 47.368 0.00 0.00 40.66 3.01
2102 3920 4.563404 TTTTTGGAACCGCCGAGT 57.437 50.000 0.00 0.00 40.66 4.18
2122 3940 9.445786 CAACTTGTTTGAGTTCGTTTATATGTT 57.554 29.630 0.00 0.00 37.76 2.71
2123 3941 8.617809 ACAACTTGTTTGAGTTCGTTTATATGT 58.382 29.630 0.00 0.00 37.76 2.29
2126 3944 9.316730 ACTACAACTTGTTTGAGTTCGTTTATA 57.683 29.630 0.00 0.00 37.76 0.98
2127 3945 8.205131 ACTACAACTTGTTTGAGTTCGTTTAT 57.795 30.769 0.00 0.00 37.76 1.40
2128 3946 7.599630 ACTACAACTTGTTTGAGTTCGTTTA 57.400 32.000 0.00 0.00 37.76 2.01
2129 3947 6.490566 ACTACAACTTGTTTGAGTTCGTTT 57.509 33.333 0.00 0.00 37.76 3.60
2130 3948 6.257193 CCTACTACAACTTGTTTGAGTTCGTT 59.743 38.462 0.00 0.00 37.76 3.85
2131 3949 5.751990 CCTACTACAACTTGTTTGAGTTCGT 59.248 40.000 0.00 0.00 37.76 3.85
2132 3950 5.751990 ACCTACTACAACTTGTTTGAGTTCG 59.248 40.000 0.00 0.00 37.76 3.95
2133 3951 6.074463 CGACCTACTACAACTTGTTTGAGTTC 60.074 42.308 0.00 0.00 37.76 3.01
2134 3952 5.751990 CGACCTACTACAACTTGTTTGAGTT 59.248 40.000 0.00 0.00 40.37 3.01
2135 3953 5.068198 TCGACCTACTACAACTTGTTTGAGT 59.932 40.000 0.00 0.68 38.73 3.41
2136 3954 5.526115 TCGACCTACTACAACTTGTTTGAG 58.474 41.667 0.00 0.00 38.73 3.02
2137 3955 5.300034 TCTCGACCTACTACAACTTGTTTGA 59.700 40.000 0.00 0.00 38.73 2.69
2138 3956 5.526115 TCTCGACCTACTACAACTTGTTTG 58.474 41.667 0.00 0.00 41.49 2.93
2139 3957 5.779529 TCTCGACCTACTACAACTTGTTT 57.220 39.130 0.00 0.00 0.00 2.83
2140 3958 5.770417 CTTCTCGACCTACTACAACTTGTT 58.230 41.667 0.00 0.00 0.00 2.83
2141 3959 4.321082 GCTTCTCGACCTACTACAACTTGT 60.321 45.833 0.00 0.00 0.00 3.16
2142 3960 4.167268 GCTTCTCGACCTACTACAACTTG 58.833 47.826 0.00 0.00 0.00 3.16
2143 3961 3.193056 GGCTTCTCGACCTACTACAACTT 59.807 47.826 0.00 0.00 0.00 2.66
2144 3962 2.754002 GGCTTCTCGACCTACTACAACT 59.246 50.000 0.00 0.00 0.00 3.16
2145 3963 2.490903 TGGCTTCTCGACCTACTACAAC 59.509 50.000 0.00 0.00 0.00 3.32
2146 3964 2.799017 TGGCTTCTCGACCTACTACAA 58.201 47.619 0.00 0.00 0.00 2.41
2147 3965 2.502142 TGGCTTCTCGACCTACTACA 57.498 50.000 0.00 0.00 0.00 2.74
2148 3966 4.388378 AAATGGCTTCTCGACCTACTAC 57.612 45.455 0.00 0.00 0.00 2.73
2149 3967 6.726490 AATAAATGGCTTCTCGACCTACTA 57.274 37.500 0.00 0.00 0.00 1.82
2150 3968 5.615925 AATAAATGGCTTCTCGACCTACT 57.384 39.130 0.00 0.00 0.00 2.57
2185 4003 8.184304 AGTTGCTCTTAATAGATCGGAGTATT 57.816 34.615 0.00 2.16 0.00 1.89
2192 4010 4.683781 GCCAGAGTTGCTCTTAATAGATCG 59.316 45.833 0.00 0.00 38.99 3.69
2193 4011 5.605534 TGCCAGAGTTGCTCTTAATAGATC 58.394 41.667 0.00 0.00 38.99 2.75
2220 4040 5.567138 AAAGTCAGCGAATTTAGGGAATG 57.433 39.130 2.94 0.00 27.95 2.67
2231 4051 6.249682 CGAAAACAAGTTTTAAAGTCAGCGAA 59.750 34.615 10.60 0.00 42.26 4.70
2234 4054 6.020916 GGTCGAAAACAAGTTTTAAAGTCAGC 60.021 38.462 10.60 0.00 42.26 4.26
2277 4097 1.963515 CCCACTTGCTTTGTAGGCTTT 59.036 47.619 0.00 0.00 0.00 3.51
2281 4101 1.327303 TTGCCCACTTGCTTTGTAGG 58.673 50.000 0.00 0.00 0.00 3.18
2285 4105 3.383761 CTTAGTTTGCCCACTTGCTTTG 58.616 45.455 0.00 0.00 0.00 2.77
2287 4107 1.963515 CCTTAGTTTGCCCACTTGCTT 59.036 47.619 0.00 0.00 0.00 3.91
2363 4183 9.699410 ATTGGAGTTGAAATGGAGTTTATATGA 57.301 29.630 0.00 0.00 0.00 2.15
2375 4195 5.911280 GTGATGCGATATTGGAGTTGAAATG 59.089 40.000 0.00 0.00 0.00 2.32
2389 4209 0.823769 AGGAGCGGAGTGATGCGATA 60.824 55.000 0.00 0.00 35.87 2.92
2399 4219 0.536460 GAGGACTAGGAGGAGCGGAG 60.536 65.000 0.00 0.00 0.00 4.63
2400 4220 1.532728 GAGGACTAGGAGGAGCGGA 59.467 63.158 0.00 0.00 0.00 5.54
2401 4221 1.529713 GGAGGACTAGGAGGAGCGG 60.530 68.421 0.00 0.00 0.00 5.52
2402 4222 1.894756 CGGAGGACTAGGAGGAGCG 60.895 68.421 0.00 0.00 0.00 5.03
2403 4223 2.197605 GCGGAGGACTAGGAGGAGC 61.198 68.421 0.00 0.00 0.00 4.70
2404 4224 0.536460 GAGCGGAGGACTAGGAGGAG 60.536 65.000 0.00 0.00 0.00 3.69
2405 4225 1.532728 GAGCGGAGGACTAGGAGGA 59.467 63.158 0.00 0.00 0.00 3.71
2406 4226 1.529713 GGAGCGGAGGACTAGGAGG 60.530 68.421 0.00 0.00 0.00 4.30
2407 4227 0.536460 GAGGAGCGGAGGACTAGGAG 60.536 65.000 0.00 0.00 0.00 3.69
2408 4228 1.532728 GAGGAGCGGAGGACTAGGA 59.467 63.158 0.00 0.00 0.00 2.94
2409 4229 1.529713 GGAGGAGCGGAGGACTAGG 60.530 68.421 0.00 0.00 0.00 3.02
2410 4230 0.766131 TAGGAGGAGCGGAGGACTAG 59.234 60.000 0.00 0.00 0.00 2.57
2411 4231 0.766131 CTAGGAGGAGCGGAGGACTA 59.234 60.000 0.00 0.00 0.00 2.59
2412 4232 1.534697 CTAGGAGGAGCGGAGGACT 59.465 63.158 0.00 0.00 0.00 3.85
2413 4233 2.197605 GCTAGGAGGAGCGGAGGAC 61.198 68.421 0.00 0.00 31.57 3.85
2414 4234 2.196229 GCTAGGAGGAGCGGAGGA 59.804 66.667 0.00 0.00 31.57 3.71
2415 4235 2.915137 GGCTAGGAGGAGCGGAGG 60.915 72.222 0.00 0.00 43.83 4.30
2416 4236 2.915137 GGGCTAGGAGGAGCGGAG 60.915 72.222 0.00 0.00 43.83 4.63
2417 4237 4.541648 GGGGCTAGGAGGAGCGGA 62.542 72.222 0.00 0.00 43.83 5.54
2418 4238 4.860881 TGGGGCTAGGAGGAGCGG 62.861 72.222 0.00 0.00 43.83 5.52
2419 4239 3.541713 GTGGGGCTAGGAGGAGCG 61.542 72.222 0.00 0.00 43.83 5.03
2420 4240 3.164977 GGTGGGGCTAGGAGGAGC 61.165 72.222 0.00 0.00 42.05 4.70
2421 4241 2.840102 CGGTGGGGCTAGGAGGAG 60.840 72.222 0.00 0.00 0.00 3.69
2422 4242 3.248248 AACGGTGGGGCTAGGAGGA 62.248 63.158 0.00 0.00 0.00 3.71
2423 4243 2.687566 AACGGTGGGGCTAGGAGG 60.688 66.667 0.00 0.00 0.00 4.30
2424 4244 2.584608 CAACGGTGGGGCTAGGAG 59.415 66.667 0.00 0.00 0.00 3.69
2425 4245 3.006728 CCAACGGTGGGGCTAGGA 61.007 66.667 13.17 0.00 41.77 2.94
2426 4246 4.796495 GCCAACGGTGGGGCTAGG 62.796 72.222 23.69 0.00 46.09 3.02
2431 4251 2.983592 GAGTTGCCAACGGTGGGG 60.984 66.667 23.69 0.00 46.09 4.96
2432 4252 2.983592 GGAGTTGCCAACGGTGGG 60.984 66.667 23.69 2.65 46.09 4.61
2434 4254 3.353836 CCGGAGTTGCCAACGGTG 61.354 66.667 0.00 0.00 41.34 4.94
2458 4278 3.646976 CATGAGCAGCGATGGCCG 61.647 66.667 1.46 0.00 41.24 6.13
2459 4279 3.962421 GCATGAGCAGCGATGGCC 61.962 66.667 1.46 0.00 41.24 5.36
2460 4280 3.962421 GGCATGAGCAGCGATGGC 61.962 66.667 15.34 15.34 44.61 4.40
2461 4281 3.646976 CGGCATGAGCAGCGATGG 61.647 66.667 1.46 0.00 44.61 3.51
2467 4287 4.189188 GGCTTGCGGCATGAGCAG 62.189 66.667 23.61 10.94 46.01 4.24
2476 4296 3.315142 TAGCTGGAGTGGCTTGCGG 62.315 63.158 0.00 0.00 40.74 5.69
2477 4297 2.103042 GTAGCTGGAGTGGCTTGCG 61.103 63.158 0.00 0.00 40.74 4.85
2478 4298 2.103042 CGTAGCTGGAGTGGCTTGC 61.103 63.158 0.00 0.00 40.74 4.01
2479 4299 1.448540 CCGTAGCTGGAGTGGCTTG 60.449 63.158 0.00 0.00 40.74 4.01
2480 4300 2.982130 CCGTAGCTGGAGTGGCTT 59.018 61.111 0.00 0.00 40.74 4.35
2481 4301 3.775654 GCCGTAGCTGGAGTGGCT 61.776 66.667 0.00 0.00 42.44 4.75
2483 4303 3.449227 TCGCCGTAGCTGGAGTGG 61.449 66.667 0.00 0.00 36.60 4.00
2484 4304 2.202623 GTCGCCGTAGCTGGAGTG 60.203 66.667 0.00 0.00 36.60 3.51
2485 4305 3.450115 GGTCGCCGTAGCTGGAGT 61.450 66.667 0.00 0.00 36.60 3.85
2486 4306 3.449227 TGGTCGCCGTAGCTGGAG 61.449 66.667 0.00 0.00 36.60 3.86
2487 4307 3.755628 GTGGTCGCCGTAGCTGGA 61.756 66.667 0.00 0.00 36.60 3.86
2488 4308 4.814294 GGTGGTCGCCGTAGCTGG 62.814 72.222 0.00 0.00 36.60 4.85
2489 4309 4.063967 TGGTGGTCGCCGTAGCTG 62.064 66.667 0.00 0.00 36.60 4.24
2490 4310 4.065281 GTGGTGGTCGCCGTAGCT 62.065 66.667 0.00 0.00 36.60 3.32
2491 4311 4.367023 TGTGGTGGTCGCCGTAGC 62.367 66.667 0.00 0.00 0.00 3.58
2492 4312 2.431942 GTGTGGTGGTCGCCGTAG 60.432 66.667 0.00 0.00 0.00 3.51
2493 4313 3.993584 GGTGTGGTGGTCGCCGTA 61.994 66.667 0.00 0.00 0.00 4.02
2498 4318 4.016706 GAGGGGGTGTGGTGGTCG 62.017 72.222 0.00 0.00 0.00 4.79
2499 4319 2.529389 AGAGGGGGTGTGGTGGTC 60.529 66.667 0.00 0.00 0.00 4.02
2500 4320 2.529389 GAGAGGGGGTGTGGTGGT 60.529 66.667 0.00 0.00 0.00 4.16
2501 4321 0.546747 TAAGAGAGGGGGTGTGGTGG 60.547 60.000 0.00 0.00 0.00 4.61
2502 4322 1.003233 GTTAAGAGAGGGGGTGTGGTG 59.997 57.143 0.00 0.00 0.00 4.17
2503 4323 1.359168 GTTAAGAGAGGGGGTGTGGT 58.641 55.000 0.00 0.00 0.00 4.16
2504 4324 0.618981 GGTTAAGAGAGGGGGTGTGG 59.381 60.000 0.00 0.00 0.00 4.17
2505 4325 1.279271 CAGGTTAAGAGAGGGGGTGTG 59.721 57.143 0.00 0.00 0.00 3.82
2506 4326 1.657804 CAGGTTAAGAGAGGGGGTGT 58.342 55.000 0.00 0.00 0.00 4.16
2507 4327 0.912486 CCAGGTTAAGAGAGGGGGTG 59.088 60.000 0.00 0.00 0.00 4.61
2508 4328 0.253207 CCCAGGTTAAGAGAGGGGGT 60.253 60.000 0.00 0.00 35.83 4.95
2509 4329 0.253207 ACCCAGGTTAAGAGAGGGGG 60.253 60.000 0.00 0.00 43.96 5.40
2510 4330 2.563039 TACCCAGGTTAAGAGAGGGG 57.437 55.000 0.00 0.00 43.96 4.79
2511 4331 2.170817 GCTTACCCAGGTTAAGAGAGGG 59.829 54.545 7.96 0.00 45.20 4.30
2512 4332 2.159085 CGCTTACCCAGGTTAAGAGAGG 60.159 54.545 7.96 0.00 0.00 3.69
2513 4333 2.758979 TCGCTTACCCAGGTTAAGAGAG 59.241 50.000 7.96 0.00 0.00 3.20
2514 4334 2.811410 TCGCTTACCCAGGTTAAGAGA 58.189 47.619 7.96 7.01 0.00 3.10
2515 4335 3.118738 ACATCGCTTACCCAGGTTAAGAG 60.119 47.826 7.96 4.62 0.00 2.85
2516 4336 2.835764 ACATCGCTTACCCAGGTTAAGA 59.164 45.455 7.96 0.00 0.00 2.10
2517 4337 3.118738 AGACATCGCTTACCCAGGTTAAG 60.119 47.826 0.00 0.00 0.00 1.85
2518 4338 2.835764 AGACATCGCTTACCCAGGTTAA 59.164 45.455 0.00 0.00 0.00 2.01
2519 4339 2.463752 AGACATCGCTTACCCAGGTTA 58.536 47.619 0.00 0.00 0.00 2.85
2520 4340 1.276622 AGACATCGCTTACCCAGGTT 58.723 50.000 0.00 0.00 0.00 3.50
2521 4341 1.276622 AAGACATCGCTTACCCAGGT 58.723 50.000 0.00 0.00 0.00 4.00
2522 4342 2.403252 AAAGACATCGCTTACCCAGG 57.597 50.000 0.00 0.00 0.00 4.45
2523 4343 4.693283 TGATAAAGACATCGCTTACCCAG 58.307 43.478 0.00 0.00 0.00 4.45
2524 4344 4.404394 TCTGATAAAGACATCGCTTACCCA 59.596 41.667 0.00 0.00 0.00 4.51
2525 4345 4.945246 TCTGATAAAGACATCGCTTACCC 58.055 43.478 0.00 0.00 0.00 3.69
2526 4346 6.451393 AGATCTGATAAAGACATCGCTTACC 58.549 40.000 0.00 0.00 37.88 2.85
2527 4347 7.325821 CAGAGATCTGATAAAGACATCGCTTAC 59.674 40.741 0.00 0.00 46.59 2.34
2528 4348 7.366513 CAGAGATCTGATAAAGACATCGCTTA 58.633 38.462 0.00 0.00 46.59 3.09
2529 4349 6.215121 CAGAGATCTGATAAAGACATCGCTT 58.785 40.000 0.00 0.00 46.59 4.68
2530 4350 5.771469 CAGAGATCTGATAAAGACATCGCT 58.229 41.667 0.00 0.00 46.59 4.93
2531 4351 4.385447 GCAGAGATCTGATAAAGACATCGC 59.615 45.833 13.98 0.00 46.59 4.58
2532 4352 5.771469 AGCAGAGATCTGATAAAGACATCG 58.229 41.667 13.98 0.00 46.59 3.84
2533 4353 7.710044 TCAAAGCAGAGATCTGATAAAGACATC 59.290 37.037 13.98 0.00 46.59 3.06
2534 4354 7.563020 TCAAAGCAGAGATCTGATAAAGACAT 58.437 34.615 13.98 0.00 46.59 3.06
2535 4355 6.939622 TCAAAGCAGAGATCTGATAAAGACA 58.060 36.000 13.98 0.00 46.59 3.41
2536 4356 7.264221 TCTCAAAGCAGAGATCTGATAAAGAC 58.736 38.462 13.98 0.00 46.59 3.01
2537 4357 7.341512 TCTCTCAAAGCAGAGATCTGATAAAGA 59.658 37.037 13.98 9.59 43.40 2.52
2538 4358 7.490840 TCTCTCAAAGCAGAGATCTGATAAAG 58.509 38.462 13.98 6.10 43.40 1.85
2539 4359 7.415592 TCTCTCAAAGCAGAGATCTGATAAA 57.584 36.000 13.98 0.00 43.40 1.40
2540 4360 6.040729 CCTCTCTCAAAGCAGAGATCTGATAA 59.959 42.308 13.98 0.00 46.37 1.75
2541 4361 5.535783 CCTCTCTCAAAGCAGAGATCTGATA 59.464 44.000 13.98 0.00 46.37 2.15
2542 4362 4.342951 CCTCTCTCAAAGCAGAGATCTGAT 59.657 45.833 13.98 4.21 46.37 2.90
2543 4363 3.700539 CCTCTCTCAAAGCAGAGATCTGA 59.299 47.826 13.98 0.00 46.37 3.27
2544 4364 3.738899 GCCTCTCTCAAAGCAGAGATCTG 60.739 52.174 0.00 5.45 46.37 2.90
2545 4365 2.431782 GCCTCTCTCAAAGCAGAGATCT 59.568 50.000 0.00 0.00 46.37 2.75
2546 4366 2.483538 GGCCTCTCTCAAAGCAGAGATC 60.484 54.545 0.00 0.00 46.37 2.75
2547 4367 1.485895 GGCCTCTCTCAAAGCAGAGAT 59.514 52.381 0.00 0.00 46.37 2.75
2548 4368 0.901124 GGCCTCTCTCAAAGCAGAGA 59.099 55.000 0.00 1.90 45.60 3.10
2549 4369 0.612229 TGGCCTCTCTCAAAGCAGAG 59.388 55.000 3.32 0.00 41.35 3.35
2550 4370 1.065636 CATGGCCTCTCTCAAAGCAGA 60.066 52.381 3.32 0.00 0.00 4.26
2551 4371 1.380524 CATGGCCTCTCTCAAAGCAG 58.619 55.000 3.32 0.00 0.00 4.24
2552 4372 0.679002 GCATGGCCTCTCTCAAAGCA 60.679 55.000 3.32 0.00 0.00 3.91
2553 4373 1.382692 GGCATGGCCTCTCTCAAAGC 61.383 60.000 8.35 0.00 46.69 3.51
2554 4374 2.791170 GGCATGGCCTCTCTCAAAG 58.209 57.895 8.35 0.00 46.69 2.77
2565 4385 1.508088 CGGTCTTCAAAGGCATGGC 59.492 57.895 12.14 12.14 30.55 4.40
2566 4386 1.243342 TGCGGTCTTCAAAGGCATGG 61.243 55.000 0.00 0.00 30.55 3.66
2567 4387 0.813184 ATGCGGTCTTCAAAGGCATG 59.187 50.000 4.76 0.00 42.28 4.06
2568 4388 1.098050 GATGCGGTCTTCAAAGGCAT 58.902 50.000 5.12 5.12 46.14 4.40
2569 4389 0.036732 AGATGCGGTCTTCAAAGGCA 59.963 50.000 0.00 0.00 38.09 4.75
2570 4390 0.449388 CAGATGCGGTCTTCAAAGGC 59.551 55.000 0.00 0.00 34.00 4.35
2571 4391 1.089920 CCAGATGCGGTCTTCAAAGG 58.910 55.000 0.00 0.00 34.00 3.11
2572 4392 0.449388 GCCAGATGCGGTCTTCAAAG 59.551 55.000 0.00 0.00 34.00 2.77
2573 4393 0.250684 TGCCAGATGCGGTCTTCAAA 60.251 50.000 0.00 0.00 45.60 2.69
2574 4394 0.035152 ATGCCAGATGCGGTCTTCAA 60.035 50.000 0.00 0.00 45.60 2.69
2575 4395 0.035152 AATGCCAGATGCGGTCTTCA 60.035 50.000 0.00 0.00 45.60 3.02
2576 4396 0.659957 GAATGCCAGATGCGGTCTTC 59.340 55.000 0.00 0.00 45.60 2.87
2577 4397 0.749454 GGAATGCCAGATGCGGTCTT 60.749 55.000 0.00 0.00 45.60 3.01
2578 4398 1.153086 GGAATGCCAGATGCGGTCT 60.153 57.895 0.00 0.00 45.60 3.85
2579 4399 2.189499 GGGAATGCCAGATGCGGTC 61.189 63.158 0.00 0.00 45.60 4.79
2580 4400 2.124151 GGGAATGCCAGATGCGGT 60.124 61.111 0.00 0.00 45.60 5.68
2581 4401 2.191513 CAGGGAATGCCAGATGCGG 61.192 63.158 0.00 0.00 45.60 5.69
2582 4402 0.749091 TTCAGGGAATGCCAGATGCG 60.749 55.000 0.00 0.00 45.60 4.73
2583 4403 1.135721 GTTTCAGGGAATGCCAGATGC 59.864 52.381 0.00 0.00 41.77 3.91
2584 4404 1.753073 GGTTTCAGGGAATGCCAGATG 59.247 52.381 0.00 0.00 35.15 2.90
2585 4405 1.683011 CGGTTTCAGGGAATGCCAGAT 60.683 52.381 0.00 0.00 35.15 2.90
2586 4406 0.322456 CGGTTTCAGGGAATGCCAGA 60.322 55.000 0.00 0.00 35.15 3.86
2587 4407 0.322456 TCGGTTTCAGGGAATGCCAG 60.322 55.000 0.00 0.00 35.15 4.85
2588 4408 0.331278 ATCGGTTTCAGGGAATGCCA 59.669 50.000 0.00 0.00 35.15 4.92
2589 4409 1.025041 GATCGGTTTCAGGGAATGCC 58.975 55.000 0.00 0.00 0.00 4.40
2590 4410 1.750193 TGATCGGTTTCAGGGAATGC 58.250 50.000 0.00 0.00 0.00 3.56
2591 4411 3.347216 AGTTGATCGGTTTCAGGGAATG 58.653 45.455 0.00 0.00 0.00 2.67
2592 4412 3.721087 AGTTGATCGGTTTCAGGGAAT 57.279 42.857 0.00 0.00 0.00 3.01
2593 4413 3.181449 TGAAGTTGATCGGTTTCAGGGAA 60.181 43.478 2.56 0.00 0.00 3.97
2594 4414 2.370519 TGAAGTTGATCGGTTTCAGGGA 59.629 45.455 2.56 0.00 0.00 4.20
2595 4415 2.484264 GTGAAGTTGATCGGTTTCAGGG 59.516 50.000 6.00 0.00 30.86 4.45
2596 4416 2.157668 CGTGAAGTTGATCGGTTTCAGG 59.842 50.000 6.00 7.96 30.86 3.86
2597 4417 2.157668 CCGTGAAGTTGATCGGTTTCAG 59.842 50.000 6.00 2.60 38.45 3.02
2598 4418 2.139917 CCGTGAAGTTGATCGGTTTCA 58.860 47.619 0.00 2.56 38.45 2.69
2599 4419 2.875080 CCGTGAAGTTGATCGGTTTC 57.125 50.000 0.00 0.00 38.45 2.78
2617 4437 1.886886 TCTTGTAAACTCGGCCAACC 58.113 50.000 2.24 0.00 0.00 3.77
2618 4438 2.418976 GGATCTTGTAAACTCGGCCAAC 59.581 50.000 2.24 0.00 0.00 3.77
2619 4439 2.039216 TGGATCTTGTAAACTCGGCCAA 59.961 45.455 2.24 0.00 0.00 4.52
2620 4440 1.626321 TGGATCTTGTAAACTCGGCCA 59.374 47.619 2.24 0.00 0.00 5.36
2621 4441 2.396590 TGGATCTTGTAAACTCGGCC 57.603 50.000 0.00 0.00 0.00 6.13
2622 4442 3.596214 TCTTGGATCTTGTAAACTCGGC 58.404 45.455 0.00 0.00 0.00 5.54
2623 4443 4.811557 GGATCTTGGATCTTGTAAACTCGG 59.188 45.833 7.35 0.00 0.00 4.63
2624 4444 4.504461 CGGATCTTGGATCTTGTAAACTCG 59.496 45.833 7.35 0.00 0.00 4.18
2625 4445 5.420409 ACGGATCTTGGATCTTGTAAACTC 58.580 41.667 7.35 0.00 0.00 3.01
2626 4446 5.187967 AGACGGATCTTGGATCTTGTAAACT 59.812 40.000 7.35 0.00 0.00 2.66
2627 4447 5.420409 AGACGGATCTTGGATCTTGTAAAC 58.580 41.667 7.35 0.00 0.00 2.01
2628 4448 5.186992 TGAGACGGATCTTGGATCTTGTAAA 59.813 40.000 7.35 0.00 34.34 2.01
2629 4449 4.709886 TGAGACGGATCTTGGATCTTGTAA 59.290 41.667 7.35 0.00 34.34 2.41
2630 4450 4.098044 GTGAGACGGATCTTGGATCTTGTA 59.902 45.833 7.35 0.00 34.34 2.41
2631 4451 3.099905 TGAGACGGATCTTGGATCTTGT 58.900 45.455 7.35 6.58 34.34 3.16
2632 4452 3.452474 GTGAGACGGATCTTGGATCTTG 58.548 50.000 7.35 3.96 34.34 3.02
2633 4453 2.099921 CGTGAGACGGATCTTGGATCTT 59.900 50.000 7.35 0.00 38.08 2.40
2634 4454 1.678627 CGTGAGACGGATCTTGGATCT 59.321 52.381 7.35 0.00 38.08 2.75
2635 4455 2.126914 CGTGAGACGGATCTTGGATC 57.873 55.000 0.00 0.00 38.08 3.36
2646 4466 0.811915 ACTGATTCCTCCGTGAGACG 59.188 55.000 2.84 0.00 42.11 4.18
2647 4467 2.359531 CCTACTGATTCCTCCGTGAGAC 59.640 54.545 2.84 0.00 0.00 3.36
2648 4468 2.025226 ACCTACTGATTCCTCCGTGAGA 60.025 50.000 2.84 0.00 0.00 3.27
2649 4469 2.379972 ACCTACTGATTCCTCCGTGAG 58.620 52.381 0.00 0.00 0.00 3.51
2650 4470 2.526888 ACCTACTGATTCCTCCGTGA 57.473 50.000 0.00 0.00 0.00 4.35
2651 4471 3.021695 TGTACCTACTGATTCCTCCGTG 58.978 50.000 0.00 0.00 0.00 4.94
2652 4472 3.377253 TGTACCTACTGATTCCTCCGT 57.623 47.619 0.00 0.00 0.00 4.69
2653 4473 4.939052 ATTGTACCTACTGATTCCTCCG 57.061 45.455 0.00 0.00 0.00 4.63
2654 4474 6.487299 AGAATTGTACCTACTGATTCCTCC 57.513 41.667 0.00 0.00 33.75 4.30
2655 4475 7.787028 AGAAGAATTGTACCTACTGATTCCTC 58.213 38.462 0.00 0.00 33.75 3.71
2656 4476 7.621683 AGAGAAGAATTGTACCTACTGATTCCT 59.378 37.037 0.00 0.00 33.75 3.36
2657 4477 7.787028 AGAGAAGAATTGTACCTACTGATTCC 58.213 38.462 0.00 0.00 33.75 3.01
2658 4478 7.646130 CGAGAGAAGAATTGTACCTACTGATTC 59.354 40.741 0.00 0.00 33.61 2.52
2659 4479 7.122948 ACGAGAGAAGAATTGTACCTACTGATT 59.877 37.037 0.00 0.00 0.00 2.57
2660 4480 6.603997 ACGAGAGAAGAATTGTACCTACTGAT 59.396 38.462 0.00 0.00 0.00 2.90
2661 4481 5.944599 ACGAGAGAAGAATTGTACCTACTGA 59.055 40.000 0.00 0.00 0.00 3.41
2662 4482 6.030849 CACGAGAGAAGAATTGTACCTACTG 58.969 44.000 0.00 0.00 0.00 2.74
2663 4483 5.393243 GCACGAGAGAAGAATTGTACCTACT 60.393 44.000 0.00 0.00 0.00 2.57
2664 4484 4.799428 GCACGAGAGAAGAATTGTACCTAC 59.201 45.833 0.00 0.00 0.00 3.18
2665 4485 4.705507 AGCACGAGAGAAGAATTGTACCTA 59.294 41.667 0.00 0.00 0.00 3.08
2666 4486 3.511934 AGCACGAGAGAAGAATTGTACCT 59.488 43.478 0.00 0.00 0.00 3.08
2667 4487 3.851098 AGCACGAGAGAAGAATTGTACC 58.149 45.455 0.00 0.00 0.00 3.34
2668 4488 4.030753 CGAAGCACGAGAGAAGAATTGTAC 59.969 45.833 0.00 0.00 45.77 2.90
2669 4489 4.166523 CGAAGCACGAGAGAAGAATTGTA 58.833 43.478 0.00 0.00 45.77 2.41
2670 4490 2.989840 CGAAGCACGAGAGAAGAATTGT 59.010 45.455 0.00 0.00 45.77 2.71
2671 4491 2.346847 CCGAAGCACGAGAGAAGAATTG 59.653 50.000 4.96 0.00 45.77 2.32
2672 4492 2.231478 TCCGAAGCACGAGAGAAGAATT 59.769 45.455 4.96 0.00 45.77 2.17
2673 4493 1.819288 TCCGAAGCACGAGAGAAGAAT 59.181 47.619 4.96 0.00 45.77 2.40
2674 4494 1.200252 CTCCGAAGCACGAGAGAAGAA 59.800 52.381 4.96 0.00 45.77 2.52
2675 4495 0.805614 CTCCGAAGCACGAGAGAAGA 59.194 55.000 4.96 0.00 45.77 2.87
2676 4496 0.179150 CCTCCGAAGCACGAGAGAAG 60.179 60.000 16.46 4.77 45.77 2.85
2677 4497 0.608308 TCCTCCGAAGCACGAGAGAA 60.608 55.000 16.46 2.09 45.77 2.87
2678 4498 0.608308 TTCCTCCGAAGCACGAGAGA 60.608 55.000 16.46 5.03 45.77 3.10
2679 4499 0.179150 CTTCCTCCGAAGCACGAGAG 60.179 60.000 4.96 9.01 45.77 3.20
2680 4500 0.608308 TCTTCCTCCGAAGCACGAGA 60.608 55.000 4.96 0.00 44.50 4.04
2681 4501 0.179150 CTCTTCCTCCGAAGCACGAG 60.179 60.000 4.96 0.00 44.50 4.18
2682 4502 1.883732 CTCTTCCTCCGAAGCACGA 59.116 57.895 4.96 0.00 44.50 4.35
2683 4503 1.807573 GCTCTTCCTCCGAAGCACG 60.808 63.158 0.00 0.00 44.50 5.34
2684 4504 0.036858 AAGCTCTTCCTCCGAAGCAC 60.037 55.000 0.00 0.00 44.50 4.40
2685 4505 0.247736 GAAGCTCTTCCTCCGAAGCA 59.752 55.000 0.00 0.00 44.50 3.91
2686 4506 0.534873 AGAAGCTCTTCCTCCGAAGC 59.465 55.000 6.04 0.00 44.50 3.86
2687 4507 2.999355 CAAAGAAGCTCTTCCTCCGAAG 59.001 50.000 6.04 0.00 45.96 3.79
2688 4508 2.368875 ACAAAGAAGCTCTTCCTCCGAA 59.631 45.455 6.04 0.00 40.33 4.30
2689 4509 1.971357 ACAAAGAAGCTCTTCCTCCGA 59.029 47.619 6.04 0.00 40.33 4.55
2690 4510 2.464157 ACAAAGAAGCTCTTCCTCCG 57.536 50.000 6.04 0.00 40.33 4.63
2691 4511 3.744660 TGAACAAAGAAGCTCTTCCTCC 58.255 45.455 6.04 0.00 40.33 4.30
2692 4512 5.757850 TTTGAACAAAGAAGCTCTTCCTC 57.242 39.130 6.04 0.00 40.33 3.71
2693 4513 6.721704 ATTTTGAACAAAGAAGCTCTTCCT 57.278 33.333 6.04 0.00 40.33 3.36
2694 4514 7.776933 AAATTTTGAACAAAGAAGCTCTTCC 57.223 32.000 6.04 0.00 40.33 3.46
2695 4515 9.736023 TCTAAATTTTGAACAAAGAAGCTCTTC 57.264 29.630 0.00 1.52 35.27 2.87
2699 4519 9.875691 AGTTTCTAAATTTTGAACAAAGAAGCT 57.124 25.926 13.53 10.27 0.00 3.74
2700 4520 9.906111 CAGTTTCTAAATTTTGAACAAAGAAGC 57.094 29.630 13.53 8.45 0.00 3.86
2703 4523 9.921637 ACACAGTTTCTAAATTTTGAACAAAGA 57.078 25.926 13.53 0.00 0.00 2.52
2704 4524 9.956797 CACACAGTTTCTAAATTTTGAACAAAG 57.043 29.630 13.53 7.74 0.00 2.77
2705 4525 9.698309 TCACACAGTTTCTAAATTTTGAACAAA 57.302 25.926 13.53 0.00 0.00 2.83
2706 4526 9.868277 ATCACACAGTTTCTAAATTTTGAACAA 57.132 25.926 13.53 0.00 0.00 2.83
2707 4527 9.868277 AATCACACAGTTTCTAAATTTTGAACA 57.132 25.926 13.53 4.48 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.