Multiple sequence alignment - TraesCS1A01G081600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G081600 chr1A 100.000 2933 0 0 1 2933 64837802 64834870 0.000000e+00 5417.0
1 TraesCS1A01G081600 chr1A 89.032 1167 83 16 987 2143 64896591 64897722 0.000000e+00 1404.0
2 TraesCS1A01G081600 chr1A 87.713 586 50 13 2342 2925 488100873 488100308 0.000000e+00 664.0
3 TraesCS1A01G081600 chr1A 83.065 372 59 4 1562 1931 65234552 65234921 4.680000e-88 335.0
4 TraesCS1A01G081600 chr1A 81.679 393 66 6 1542 1931 64851894 64852283 3.650000e-84 322.0
5 TraesCS1A01G081600 chr1B 88.421 1425 111 27 880 2292 106817769 106816387 0.000000e+00 1668.0
6 TraesCS1A01G081600 chr1B 88.985 1153 107 14 949 2098 106903967 106905102 0.000000e+00 1408.0
7 TraesCS1A01G081600 chr1B 83.155 374 55 6 1562 1931 107130828 107131197 4.680000e-88 335.0
8 TraesCS1A01G081600 chr1B 80.252 238 45 2 82 318 520467753 520467517 8.350000e-41 178.0
9 TraesCS1A01G081600 chr1B 81.046 153 5 7 573 718 106900405 106900540 1.860000e-17 100.0
10 TraesCS1A01G081600 chr1B 81.295 139 9 12 2122 2252 106905260 106905389 2.410000e-16 97.1
11 TraesCS1A01G081600 chr1D 88.704 1381 79 29 890 2213 66354332 66352972 0.000000e+00 1615.0
12 TraesCS1A01G081600 chr1D 88.493 1234 107 22 905 2130 66389166 66390372 0.000000e+00 1459.0
13 TraesCS1A01G081600 chr1D 88.926 1183 105 10 890 2071 66323375 66322218 0.000000e+00 1435.0
14 TraesCS1A01G081600 chr1D 85.590 229 24 7 2121 2341 66352809 66352582 6.320000e-57 231.0
15 TraesCS1A01G081600 chr1D 91.045 67 1 2 21 82 66387369 66387435 5.210000e-13 86.1
16 TraesCS1A01G081600 chr1D 78.832 137 12 7 573 705 66326358 66326235 3.130000e-10 76.8
17 TraesCS1A01G081600 chr5A 97.315 596 13 3 2340 2933 565725181 565725775 0.000000e+00 1009.0
18 TraesCS1A01G081600 chr7A 95.400 587 24 3 2341 2925 519557459 519556874 0.000000e+00 931.0
19 TraesCS1A01G081600 chr7A 87.755 588 60 8 2340 2925 547089767 547090344 0.000000e+00 676.0
20 TraesCS1A01G081600 chr7A 85.654 237 25 6 2510 2741 642530713 642530945 1.050000e-59 241.0
21 TraesCS1A01G081600 chr7A 80.000 235 45 2 85 318 549790686 549790919 3.890000e-39 172.0
22 TraesCS1A01G081600 chr7A 93.333 45 1 1 2343 2385 648888088 648888132 6.780000e-07 65.8
23 TraesCS1A01G081600 chr3B 88.215 594 58 7 2342 2927 697980907 697981496 0.000000e+00 699.0
24 TraesCS1A01G081600 chr3B 80.165 242 37 7 79 318 166557841 166558073 1.400000e-38 171.0
25 TraesCS1A01G081600 chr2A 88.345 592 56 9 2342 2925 43179730 43179144 0.000000e+00 699.0
26 TraesCS1A01G081600 chr2A 88.104 538 54 6 2394 2925 29605991 29605458 5.330000e-177 630.0
27 TraesCS1A01G081600 chr7B 87.755 588 59 10 2340 2925 141016548 141017124 0.000000e+00 675.0
28 TraesCS1A01G081600 chr7B 80.508 236 41 5 82 315 455868324 455868556 3.000000e-40 176.0
29 TraesCS1A01G081600 chrUn 90.359 446 33 8 2481 2925 94242460 94242896 7.050000e-161 577.0
30 TraesCS1A01G081600 chr5D 80.833 240 45 1 79 318 354706982 354707220 1.390000e-43 187.0
31 TraesCS1A01G081600 chr5D 80.252 238 45 2 82 318 207686612 207686376 8.350000e-41 178.0
32 TraesCS1A01G081600 chr5D 80.417 240 41 4 82 318 215011609 215011373 8.350000e-41 178.0
33 TraesCS1A01G081600 chr3D 80.519 231 41 3 82 310 348058894 348058666 1.080000e-39 174.0
34 TraesCS1A01G081600 chr6D 79.916 239 44 4 82 318 53499738 53499502 3.890000e-39 172.0
35 TraesCS1A01G081600 chr2D 90.196 51 5 0 2335 2385 73327012 73327062 1.890000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G081600 chr1A 64834870 64837802 2932 True 5417.000000 5417 100.000000 1 2933 1 chr1A.!!$R1 2932
1 TraesCS1A01G081600 chr1A 64896591 64897722 1131 False 1404.000000 1404 89.032000 987 2143 1 chr1A.!!$F2 1156
2 TraesCS1A01G081600 chr1A 488100308 488100873 565 True 664.000000 664 87.713000 2342 2925 1 chr1A.!!$R2 583
3 TraesCS1A01G081600 chr1B 106816387 106817769 1382 True 1668.000000 1668 88.421000 880 2292 1 chr1B.!!$R1 1412
4 TraesCS1A01G081600 chr1B 106900405 106905389 4984 False 535.033333 1408 83.775333 573 2252 3 chr1B.!!$F2 1679
5 TraesCS1A01G081600 chr1D 66352582 66354332 1750 True 923.000000 1615 87.147000 890 2341 2 chr1D.!!$R2 1451
6 TraesCS1A01G081600 chr1D 66387369 66390372 3003 False 772.550000 1459 89.769000 21 2130 2 chr1D.!!$F1 2109
7 TraesCS1A01G081600 chr1D 66322218 66326358 4140 True 755.900000 1435 83.879000 573 2071 2 chr1D.!!$R1 1498
8 TraesCS1A01G081600 chr5A 565725181 565725775 594 False 1009.000000 1009 97.315000 2340 2933 1 chr5A.!!$F1 593
9 TraesCS1A01G081600 chr7A 519556874 519557459 585 True 931.000000 931 95.400000 2341 2925 1 chr7A.!!$R1 584
10 TraesCS1A01G081600 chr7A 547089767 547090344 577 False 676.000000 676 87.755000 2340 2925 1 chr7A.!!$F1 585
11 TraesCS1A01G081600 chr3B 697980907 697981496 589 False 699.000000 699 88.215000 2342 2927 1 chr3B.!!$F2 585
12 TraesCS1A01G081600 chr2A 43179144 43179730 586 True 699.000000 699 88.345000 2342 2925 1 chr2A.!!$R2 583
13 TraesCS1A01G081600 chr2A 29605458 29605991 533 True 630.000000 630 88.104000 2394 2925 1 chr2A.!!$R1 531
14 TraesCS1A01G081600 chr7B 141016548 141017124 576 False 675.000000 675 87.755000 2340 2925 1 chr7B.!!$F1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
571 579 0.031178 GAATCAATGATGGCGGTGGC 59.969 55.0 0.0 0.0 38.9 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2328 9391 0.038526 TTCTCTCGTCGTTTGGAGCC 60.039 55.0 0.0 0.0 0.0 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 94 7.971368 AATTGGGCATGTTTAATTACTACCT 57.029 32.000 0.00 0.00 0.00 3.08
89 95 7.582667 ATTGGGCATGTTTAATTACTACCTC 57.417 36.000 0.00 0.00 0.00 3.85
90 96 5.442391 TGGGCATGTTTAATTACTACCTCC 58.558 41.667 0.00 0.00 0.00 4.30
91 97 4.514066 GGGCATGTTTAATTACTACCTCCG 59.486 45.833 0.00 0.00 0.00 4.63
92 98 5.121105 GGCATGTTTAATTACTACCTCCGT 58.879 41.667 0.00 0.00 0.00 4.69
93 99 5.235831 GGCATGTTTAATTACTACCTCCGTC 59.764 44.000 0.00 0.00 0.00 4.79
94 100 6.047231 GCATGTTTAATTACTACCTCCGTCT 58.953 40.000 0.00 0.00 0.00 4.18
95 101 6.537660 GCATGTTTAATTACTACCTCCGTCTT 59.462 38.462 0.00 0.00 0.00 3.01
96 102 7.707893 GCATGTTTAATTACTACCTCCGTCTTA 59.292 37.037 0.00 0.00 0.00 2.10
97 103 9.590451 CATGTTTAATTACTACCTCCGTCTTAA 57.410 33.333 0.00 0.00 0.00 1.85
104 110 9.688592 AATTACTACCTCCGTCTTAATTTATCG 57.311 33.333 0.00 0.00 0.00 2.92
105 111 6.081872 ACTACCTCCGTCTTAATTTATCGG 57.918 41.667 0.00 0.00 42.12 4.18
106 112 5.595952 ACTACCTCCGTCTTAATTTATCGGT 59.404 40.000 0.00 0.00 41.58 4.69
107 113 5.349061 ACCTCCGTCTTAATTTATCGGTT 57.651 39.130 0.00 0.00 41.58 4.44
108 114 5.354767 ACCTCCGTCTTAATTTATCGGTTC 58.645 41.667 0.00 0.00 41.58 3.62
109 115 4.748600 CCTCCGTCTTAATTTATCGGTTCC 59.251 45.833 0.00 0.00 41.58 3.62
110 116 4.696455 TCCGTCTTAATTTATCGGTTCCC 58.304 43.478 0.00 0.00 41.58 3.97
111 117 4.406649 TCCGTCTTAATTTATCGGTTCCCT 59.593 41.667 0.00 0.00 41.58 4.20
112 118 5.104817 TCCGTCTTAATTTATCGGTTCCCTT 60.105 40.000 0.00 0.00 41.58 3.95
113 119 5.235831 CCGTCTTAATTTATCGGTTCCCTTC 59.764 44.000 0.00 0.00 36.99 3.46
114 120 5.813672 CGTCTTAATTTATCGGTTCCCTTCA 59.186 40.000 0.00 0.00 0.00 3.02
115 121 6.482308 CGTCTTAATTTATCGGTTCCCTTCAT 59.518 38.462 0.00 0.00 0.00 2.57
116 122 7.654520 CGTCTTAATTTATCGGTTCCCTTCATA 59.345 37.037 0.00 0.00 0.00 2.15
117 123 9.503399 GTCTTAATTTATCGGTTCCCTTCATAT 57.497 33.333 0.00 0.00 0.00 1.78
124 130 9.635404 TTTATCGGTTCCCTTCATATTTTATGT 57.365 29.630 0.00 0.00 0.00 2.29
125 131 7.745620 ATCGGTTCCCTTCATATTTTATGTC 57.254 36.000 0.00 0.00 0.00 3.06
126 132 6.654959 TCGGTTCCCTTCATATTTTATGTCA 58.345 36.000 0.00 0.00 0.00 3.58
127 133 7.113437 TCGGTTCCCTTCATATTTTATGTCAA 58.887 34.615 0.00 0.00 0.00 3.18
128 134 7.612244 TCGGTTCCCTTCATATTTTATGTCAAA 59.388 33.333 0.00 0.00 0.00 2.69
129 135 8.413229 CGGTTCCCTTCATATTTTATGTCAAAT 58.587 33.333 0.00 0.00 0.00 2.32
168 174 8.668510 TTAACCAACAAAATGTTAATGCATGT 57.331 26.923 0.00 0.00 38.77 3.21
169 175 6.783892 ACCAACAAAATGTTAATGCATGTC 57.216 33.333 0.00 0.00 38.77 3.06
170 176 5.404968 ACCAACAAAATGTTAATGCATGTCG 59.595 36.000 0.00 0.00 38.77 4.35
171 177 5.404968 CCAACAAAATGTTAATGCATGTCGT 59.595 36.000 0.00 0.00 38.77 4.34
172 178 6.584184 CCAACAAAATGTTAATGCATGTCGTA 59.416 34.615 0.00 0.00 38.77 3.43
173 179 7.115520 CCAACAAAATGTTAATGCATGTCGTAA 59.884 33.333 0.00 0.00 38.77 3.18
174 180 8.483218 CAACAAAATGTTAATGCATGTCGTAAA 58.517 29.630 0.00 0.00 38.77 2.01
175 181 8.581057 ACAAAATGTTAATGCATGTCGTAAAA 57.419 26.923 0.00 0.00 0.00 1.52
176 182 9.035607 ACAAAATGTTAATGCATGTCGTAAAAA 57.964 25.926 0.00 0.00 0.00 1.94
216 222 9.748708 AAACCATGTTTAAATATGAATCCATCG 57.251 29.630 22.34 8.61 34.31 3.84
217 223 7.885297 ACCATGTTTAAATATGAATCCATCGG 58.115 34.615 22.34 8.13 34.31 4.18
218 224 7.505585 ACCATGTTTAAATATGAATCCATCGGT 59.494 33.333 22.34 8.67 34.31 4.69
219 225 9.008965 CCATGTTTAAATATGAATCCATCGGTA 57.991 33.333 22.34 0.00 34.31 4.02
291 297 9.485591 GTCAAAATTTGATACACATTACGTAGG 57.514 33.333 11.87 0.00 42.47 3.18
292 298 8.670135 TCAAAATTTGATACACATTACGTAGGG 58.330 33.333 4.03 0.00 34.08 3.53
293 299 8.670135 CAAAATTTGATACACATTACGTAGGGA 58.330 33.333 0.00 0.00 0.00 4.20
294 300 8.795842 AAATTTGATACACATTACGTAGGGAA 57.204 30.769 0.00 0.00 0.00 3.97
295 301 7.781548 ATTTGATACACATTACGTAGGGAAC 57.218 36.000 0.00 0.00 0.00 3.62
297 303 7.643569 TTGATACACATTACGTAGGGAACTA 57.356 36.000 0.00 0.00 43.67 2.24
298 304 7.643569 TGATACACATTACGTAGGGAACTAA 57.356 36.000 0.00 0.00 46.54 2.24
299 305 8.241497 TGATACACATTACGTAGGGAACTAAT 57.759 34.615 0.00 0.00 46.54 1.73
300 306 9.353431 TGATACACATTACGTAGGGAACTAATA 57.647 33.333 0.00 0.00 46.54 0.98
303 309 8.707938 ACACATTACGTAGGGAACTAATAAAC 57.292 34.615 0.00 0.00 46.54 2.01
304 310 7.489113 ACACATTACGTAGGGAACTAATAAACG 59.511 37.037 0.00 0.00 46.54 3.60
305 311 7.701924 CACATTACGTAGGGAACTAATAAACGA 59.298 37.037 0.00 0.00 46.54 3.85
306 312 7.917505 ACATTACGTAGGGAACTAATAAACGAG 59.082 37.037 0.00 0.00 46.54 4.18
307 313 5.254339 ACGTAGGGAACTAATAAACGAGG 57.746 43.478 0.00 0.00 46.54 4.63
308 314 4.949856 ACGTAGGGAACTAATAAACGAGGA 59.050 41.667 0.00 0.00 46.54 3.71
309 315 5.163612 ACGTAGGGAACTAATAAACGAGGAC 60.164 44.000 0.00 0.00 46.54 3.85
310 316 4.382345 AGGGAACTAATAAACGAGGACG 57.618 45.455 0.00 0.00 40.61 4.79
311 317 4.019174 AGGGAACTAATAAACGAGGACGA 58.981 43.478 0.00 0.00 40.61 4.20
312 318 4.463891 AGGGAACTAATAAACGAGGACGAA 59.536 41.667 0.00 0.00 40.61 3.85
313 319 4.802563 GGGAACTAATAAACGAGGACGAAG 59.197 45.833 0.00 0.00 42.66 3.79
314 320 4.802563 GGAACTAATAAACGAGGACGAAGG 59.197 45.833 0.00 0.00 42.66 3.46
315 321 5.397142 AACTAATAAACGAGGACGAAGGT 57.603 39.130 0.00 0.00 42.66 3.50
316 322 6.404734 GGAACTAATAAACGAGGACGAAGGTA 60.405 42.308 0.00 0.00 42.66 3.08
317 323 6.129053 ACTAATAAACGAGGACGAAGGTAG 57.871 41.667 0.00 0.00 42.66 3.18
318 324 5.882557 ACTAATAAACGAGGACGAAGGTAGA 59.117 40.000 0.00 0.00 42.66 2.59
319 325 4.897025 ATAAACGAGGACGAAGGTAGAG 57.103 45.455 0.00 0.00 42.66 2.43
320 326 2.197283 AACGAGGACGAAGGTAGAGT 57.803 50.000 0.00 0.00 42.66 3.24
321 327 3.340814 AACGAGGACGAAGGTAGAGTA 57.659 47.619 0.00 0.00 42.66 2.59
322 328 2.903798 ACGAGGACGAAGGTAGAGTAG 58.096 52.381 0.00 0.00 42.66 2.57
323 329 2.499289 ACGAGGACGAAGGTAGAGTAGA 59.501 50.000 0.00 0.00 42.66 2.59
324 330 2.865551 CGAGGACGAAGGTAGAGTAGAC 59.134 54.545 0.00 0.00 42.66 2.59
359 367 2.582052 TCCAATGCTCGTTTTTGGAGT 58.418 42.857 0.00 0.00 42.96 3.85
360 368 2.955660 TCCAATGCTCGTTTTTGGAGTT 59.044 40.909 0.00 0.00 42.96 3.01
373 381 6.291374 CGTTTTTGGAGTTGGAAAATGTAACG 60.291 38.462 0.00 0.00 0.00 3.18
375 383 3.482436 TGGAGTTGGAAAATGTAACGCT 58.518 40.909 0.00 0.00 0.00 5.07
377 385 3.365969 GGAGTTGGAAAATGTAACGCTGG 60.366 47.826 0.00 0.00 0.00 4.85
392 400 2.029970 ACGCTGGCGAATAACATTTACG 59.970 45.455 21.77 0.00 42.83 3.18
393 401 2.029970 CGCTGGCGAATAACATTTACGT 59.970 45.455 9.51 0.00 42.83 3.57
394 402 3.350912 GCTGGCGAATAACATTTACGTG 58.649 45.455 0.00 0.00 0.00 4.49
398 406 3.486209 GGCGAATAACATTTACGTGGTGG 60.486 47.826 0.00 0.00 0.00 4.61
399 407 3.371591 GCGAATAACATTTACGTGGTGGA 59.628 43.478 0.00 0.00 0.00 4.02
400 408 4.034742 GCGAATAACATTTACGTGGTGGAT 59.965 41.667 0.00 0.00 0.00 3.41
401 409 5.498159 CGAATAACATTTACGTGGTGGATG 58.502 41.667 0.00 0.00 0.00 3.51
402 410 5.503357 CGAATAACATTTACGTGGTGGATGG 60.503 44.000 0.00 0.00 0.00 3.51
403 411 2.122783 ACATTTACGTGGTGGATGGG 57.877 50.000 0.00 0.00 0.00 4.00
404 412 1.353022 ACATTTACGTGGTGGATGGGT 59.647 47.619 0.00 0.00 0.00 4.51
405 413 2.224917 ACATTTACGTGGTGGATGGGTT 60.225 45.455 0.00 0.00 0.00 4.11
406 414 2.188062 TTTACGTGGTGGATGGGTTC 57.812 50.000 0.00 0.00 0.00 3.62
407 415 0.325602 TTACGTGGTGGATGGGTTCC 59.674 55.000 0.00 0.00 45.69 3.62
416 424 2.459555 GGATGGGTTCCATGATTGGT 57.540 50.000 3.93 0.00 45.26 3.67
417 425 3.593442 GGATGGGTTCCATGATTGGTA 57.407 47.619 3.93 0.00 45.26 3.25
418 426 3.490348 GGATGGGTTCCATGATTGGTAG 58.510 50.000 3.93 0.00 45.26 3.18
419 427 3.138283 GGATGGGTTCCATGATTGGTAGA 59.862 47.826 3.93 0.00 45.26 2.59
420 428 3.931907 TGGGTTCCATGATTGGTAGAG 57.068 47.619 0.00 0.00 44.06 2.43
421 429 3.459828 TGGGTTCCATGATTGGTAGAGA 58.540 45.455 0.00 0.00 44.06 3.10
422 430 3.455910 TGGGTTCCATGATTGGTAGAGAG 59.544 47.826 0.00 0.00 44.06 3.20
423 431 3.181450 GGGTTCCATGATTGGTAGAGAGG 60.181 52.174 0.00 0.00 44.06 3.69
424 432 3.181450 GGTTCCATGATTGGTAGAGAGGG 60.181 52.174 0.00 0.00 44.06 4.30
425 433 2.050144 TCCATGATTGGTAGAGAGGGC 58.950 52.381 0.00 0.00 44.06 5.19
426 434 1.270518 CCATGATTGGTAGAGAGGGCG 60.271 57.143 0.00 0.00 38.30 6.13
427 435 0.394565 ATGATTGGTAGAGAGGGCGC 59.605 55.000 0.00 0.00 0.00 6.53
428 436 0.687757 TGATTGGTAGAGAGGGCGCT 60.688 55.000 7.64 1.38 0.00 5.92
429 437 0.032815 GATTGGTAGAGAGGGCGCTC 59.967 60.000 22.44 22.44 35.11 5.03
430 438 1.403687 ATTGGTAGAGAGGGCGCTCC 61.404 60.000 25.68 17.17 35.49 4.70
431 439 3.597728 GGTAGAGAGGGCGCTCCG 61.598 72.222 25.68 0.00 41.52 4.63
432 440 3.597728 GTAGAGAGGGCGCTCCGG 61.598 72.222 25.68 0.00 41.52 5.14
441 449 4.882396 GCGCTCCGGCCTCTCTTC 62.882 72.222 0.00 0.00 34.44 2.87
442 450 4.214327 CGCTCCGGCCTCTCTTCC 62.214 72.222 0.00 0.00 34.44 3.46
443 451 3.077556 GCTCCGGCCTCTCTTCCA 61.078 66.667 0.00 0.00 0.00 3.53
444 452 2.439104 GCTCCGGCCTCTCTTCCAT 61.439 63.158 0.00 0.00 0.00 3.41
445 453 1.745264 CTCCGGCCTCTCTTCCATC 59.255 63.158 0.00 0.00 0.00 3.51
446 454 1.753368 CTCCGGCCTCTCTTCCATCC 61.753 65.000 0.00 0.00 0.00 3.51
447 455 2.419198 CGGCCTCTCTTCCATCCG 59.581 66.667 0.00 0.00 0.00 4.18
448 456 2.825264 GGCCTCTCTTCCATCCGG 59.175 66.667 0.00 0.00 0.00 5.14
449 457 1.762460 GGCCTCTCTTCCATCCGGA 60.762 63.158 6.61 6.61 40.60 5.14
480 488 4.164796 AGACAGATGGGTGATTAATGCTCA 59.835 41.667 0.00 0.00 0.00 4.26
497 505 2.908015 ACGGAAGTGTGGCTGTGT 59.092 55.556 0.00 0.00 46.97 3.72
498 506 2.129620 ACGGAAGTGTGGCTGTGTA 58.870 52.632 0.00 0.00 46.97 2.90
499 507 0.685097 ACGGAAGTGTGGCTGTGTAT 59.315 50.000 0.00 0.00 46.97 2.29
500 508 1.337823 ACGGAAGTGTGGCTGTGTATC 60.338 52.381 0.00 0.00 46.97 2.24
501 509 1.337728 CGGAAGTGTGGCTGTGTATCA 60.338 52.381 0.00 0.00 0.00 2.15
502 510 2.677902 CGGAAGTGTGGCTGTGTATCAT 60.678 50.000 0.00 0.00 0.00 2.45
503 511 2.679837 GGAAGTGTGGCTGTGTATCATG 59.320 50.000 0.00 0.00 0.00 3.07
504 512 2.408271 AGTGTGGCTGTGTATCATGG 57.592 50.000 0.00 0.00 0.00 3.66
505 513 1.630369 AGTGTGGCTGTGTATCATGGT 59.370 47.619 0.00 0.00 0.00 3.55
506 514 1.739466 GTGTGGCTGTGTATCATGGTG 59.261 52.381 0.00 0.00 0.00 4.17
507 515 1.339920 TGTGGCTGTGTATCATGGTGG 60.340 52.381 0.00 0.00 0.00 4.61
508 516 0.991146 TGGCTGTGTATCATGGTGGT 59.009 50.000 0.00 0.00 0.00 4.16
509 517 1.339920 TGGCTGTGTATCATGGTGGTG 60.340 52.381 0.00 0.00 0.00 4.17
510 518 1.340017 GGCTGTGTATCATGGTGGTGT 60.340 52.381 0.00 0.00 0.00 4.16
511 519 2.093181 GGCTGTGTATCATGGTGGTGTA 60.093 50.000 0.00 0.00 0.00 2.90
512 520 3.433598 GGCTGTGTATCATGGTGGTGTAT 60.434 47.826 0.00 0.00 0.00 2.29
513 521 3.561310 GCTGTGTATCATGGTGGTGTATG 59.439 47.826 0.00 0.00 0.00 2.39
514 522 3.540617 TGTGTATCATGGTGGTGTATGC 58.459 45.455 0.00 0.00 0.00 3.14
515 523 3.054802 TGTGTATCATGGTGGTGTATGCA 60.055 43.478 0.00 0.00 0.00 3.96
516 524 4.136796 GTGTATCATGGTGGTGTATGCAT 58.863 43.478 3.79 3.79 0.00 3.96
517 525 4.214119 GTGTATCATGGTGGTGTATGCATC 59.786 45.833 0.19 0.00 0.00 3.91
518 526 3.870538 ATCATGGTGGTGTATGCATCT 57.129 42.857 0.19 0.00 0.00 2.90
519 527 3.198409 TCATGGTGGTGTATGCATCTC 57.802 47.619 0.19 0.00 0.00 2.75
520 528 2.158769 TCATGGTGGTGTATGCATCTCC 60.159 50.000 0.19 8.09 39.24 3.71
521 529 1.583556 TGGTGGTGTATGCATCTCCT 58.416 50.000 14.99 0.00 39.45 3.69
522 530 2.758130 TGGTGGTGTATGCATCTCCTA 58.242 47.619 14.99 1.10 39.45 2.94
523 531 3.317406 TGGTGGTGTATGCATCTCCTAT 58.683 45.455 14.99 0.00 39.45 2.57
524 532 3.324846 TGGTGGTGTATGCATCTCCTATC 59.675 47.826 14.99 0.00 39.45 2.08
525 533 3.579709 GTGGTGTATGCATCTCCTATCG 58.420 50.000 0.19 0.00 0.00 2.92
526 534 3.005897 GTGGTGTATGCATCTCCTATCGT 59.994 47.826 0.19 0.00 0.00 3.73
527 535 3.005791 TGGTGTATGCATCTCCTATCGTG 59.994 47.826 0.19 0.00 0.00 4.35
528 536 3.005897 GGTGTATGCATCTCCTATCGTGT 59.994 47.826 0.19 0.00 0.00 4.49
529 537 4.217767 GGTGTATGCATCTCCTATCGTGTA 59.782 45.833 0.19 0.00 0.00 2.90
530 538 5.278808 GGTGTATGCATCTCCTATCGTGTAA 60.279 44.000 0.19 0.00 0.00 2.41
531 539 5.859114 GTGTATGCATCTCCTATCGTGTAAG 59.141 44.000 0.19 0.00 0.00 2.34
532 540 5.535030 TGTATGCATCTCCTATCGTGTAAGT 59.465 40.000 0.19 0.00 0.00 2.24
533 541 4.307443 TGCATCTCCTATCGTGTAAGTG 57.693 45.455 0.00 0.00 0.00 3.16
534 542 3.699538 TGCATCTCCTATCGTGTAAGTGT 59.300 43.478 0.00 0.00 0.00 3.55
535 543 4.045104 GCATCTCCTATCGTGTAAGTGTG 58.955 47.826 0.00 0.00 0.00 3.82
536 544 4.611943 CATCTCCTATCGTGTAAGTGTGG 58.388 47.826 0.00 0.00 0.00 4.17
537 545 3.693807 TCTCCTATCGTGTAAGTGTGGT 58.306 45.455 0.00 0.00 0.00 4.16
538 546 3.442625 TCTCCTATCGTGTAAGTGTGGTG 59.557 47.826 0.00 0.00 0.00 4.17
539 547 2.494471 TCCTATCGTGTAAGTGTGGTGG 59.506 50.000 0.00 0.00 0.00 4.61
540 548 2.232941 CCTATCGTGTAAGTGTGGTGGT 59.767 50.000 0.00 0.00 0.00 4.16
541 549 2.163818 ATCGTGTAAGTGTGGTGGTG 57.836 50.000 0.00 0.00 0.00 4.17
542 550 0.531090 TCGTGTAAGTGTGGTGGTGC 60.531 55.000 0.00 0.00 0.00 5.01
543 551 1.827315 CGTGTAAGTGTGGTGGTGCG 61.827 60.000 0.00 0.00 0.00 5.34
544 552 0.812412 GTGTAAGTGTGGTGGTGCGT 60.812 55.000 0.00 0.00 0.00 5.24
545 553 0.107606 TGTAAGTGTGGTGGTGCGTT 60.108 50.000 0.00 0.00 0.00 4.84
546 554 1.018910 GTAAGTGTGGTGGTGCGTTT 58.981 50.000 0.00 0.00 0.00 3.60
547 555 1.003223 GTAAGTGTGGTGGTGCGTTTC 60.003 52.381 0.00 0.00 0.00 2.78
548 556 1.711060 AAGTGTGGTGGTGCGTTTCG 61.711 55.000 0.00 0.00 0.00 3.46
549 557 2.125065 TGTGGTGGTGCGTTTCGT 60.125 55.556 0.00 0.00 0.00 3.85
550 558 1.143401 TGTGGTGGTGCGTTTCGTA 59.857 52.632 0.00 0.00 0.00 3.43
551 559 0.461516 TGTGGTGGTGCGTTTCGTAA 60.462 50.000 0.00 0.00 0.00 3.18
552 560 0.233848 GTGGTGGTGCGTTTCGTAAG 59.766 55.000 0.00 0.00 0.00 2.34
567 575 3.526385 CGTAAGAATCAATGATGGCGG 57.474 47.619 0.00 0.00 43.02 6.13
568 576 2.872245 CGTAAGAATCAATGATGGCGGT 59.128 45.455 0.00 0.00 43.02 5.68
569 577 3.303329 CGTAAGAATCAATGATGGCGGTG 60.303 47.826 0.00 0.00 43.02 4.94
570 578 1.683943 AGAATCAATGATGGCGGTGG 58.316 50.000 0.00 0.00 0.00 4.61
571 579 0.031178 GAATCAATGATGGCGGTGGC 59.969 55.000 0.00 0.00 38.90 5.01
611 619 1.156736 GTCGCAGAGGCAAGCTTTAA 58.843 50.000 0.00 0.00 41.24 1.52
612 620 1.740025 GTCGCAGAGGCAAGCTTTAAT 59.260 47.619 0.00 0.00 41.24 1.40
613 621 2.162408 GTCGCAGAGGCAAGCTTTAATT 59.838 45.455 0.00 0.00 41.24 1.40
614 622 3.374058 GTCGCAGAGGCAAGCTTTAATTA 59.626 43.478 0.00 0.00 41.24 1.40
615 623 4.035675 GTCGCAGAGGCAAGCTTTAATTAT 59.964 41.667 0.00 0.00 41.24 1.28
616 624 4.035558 TCGCAGAGGCAAGCTTTAATTATG 59.964 41.667 0.00 0.00 41.24 1.90
617 625 4.614946 GCAGAGGCAAGCTTTAATTATGG 58.385 43.478 0.00 0.00 40.72 2.74
618 626 4.098501 GCAGAGGCAAGCTTTAATTATGGT 59.901 41.667 0.00 0.00 40.72 3.55
619 627 5.585390 CAGAGGCAAGCTTTAATTATGGTG 58.415 41.667 0.00 0.00 0.00 4.17
620 628 4.098501 AGAGGCAAGCTTTAATTATGGTGC 59.901 41.667 0.00 0.00 0.00 5.01
621 629 3.115554 GGCAAGCTTTAATTATGGTGCG 58.884 45.455 0.00 0.00 0.00 5.34
622 630 2.535574 GCAAGCTTTAATTATGGTGCGC 59.464 45.455 0.00 0.00 0.00 6.09
623 631 3.734902 GCAAGCTTTAATTATGGTGCGCT 60.735 43.478 9.73 0.00 0.00 5.92
624 632 3.971032 AGCTTTAATTATGGTGCGCTC 57.029 42.857 9.73 4.47 0.00 5.03
625 633 2.618709 AGCTTTAATTATGGTGCGCTCC 59.381 45.455 21.41 21.41 0.00 4.70
626 634 2.287608 GCTTTAATTATGGTGCGCTCCC 60.288 50.000 24.73 16.95 0.00 4.30
627 635 3.214328 CTTTAATTATGGTGCGCTCCCT 58.786 45.455 24.73 17.82 0.00 4.20
628 636 2.543777 TAATTATGGTGCGCTCCCTC 57.456 50.000 24.73 1.65 0.00 4.30
640 648 3.338250 TCCCTCCCATGTGGCCAC 61.338 66.667 29.67 29.67 0.00 5.01
660 668 1.125633 GAGCCCATGCCATTCCATTT 58.874 50.000 0.00 0.00 38.69 2.32
670 685 0.179129 CATTCCATTTCGGTGCAGCC 60.179 55.000 10.90 2.64 35.57 4.85
683 698 3.052082 CAGCCGTGCAACAGAGGG 61.052 66.667 0.00 0.00 35.74 4.30
706 721 2.222886 TGAGACGATAGACCAGCTAGC 58.777 52.381 6.62 6.62 41.38 3.42
708 723 3.071167 TGAGACGATAGACCAGCTAGCTA 59.929 47.826 18.86 0.83 41.38 3.32
709 724 3.670625 AGACGATAGACCAGCTAGCTAG 58.329 50.000 18.86 16.84 41.38 3.42
711 726 4.019681 AGACGATAGACCAGCTAGCTAGAT 60.020 45.833 25.15 16.28 41.38 1.98
712 727 4.006989 ACGATAGACCAGCTAGCTAGATG 58.993 47.826 28.24 28.24 38.53 2.90
714 729 4.332543 CGATAGACCAGCTAGCTAGATGAG 59.667 50.000 34.72 26.31 39.46 2.90
715 730 2.875296 AGACCAGCTAGCTAGATGAGG 58.125 52.381 34.72 23.60 41.99 3.86
716 731 2.445145 AGACCAGCTAGCTAGATGAGGA 59.555 50.000 34.72 0.00 41.99 3.71
718 733 3.230134 ACCAGCTAGCTAGATGAGGAAG 58.770 50.000 34.72 21.71 41.99 3.46
719 734 2.029110 CCAGCTAGCTAGATGAGGAAGC 60.029 54.545 34.72 15.23 41.99 3.86
720 735 2.029110 CAGCTAGCTAGATGAGGAAGCC 60.029 54.545 30.71 6.38 41.99 4.35
721 736 2.158325 AGCTAGCTAGATGAGGAAGCCT 60.158 50.000 25.15 4.73 36.92 4.58
722 737 3.075283 AGCTAGCTAGATGAGGAAGCCTA 59.925 47.826 25.15 0.00 36.92 3.93
724 739 4.466015 GCTAGCTAGATGAGGAAGCCTAAT 59.534 45.833 25.15 0.00 36.92 1.73
725 740 5.046663 GCTAGCTAGATGAGGAAGCCTAATT 60.047 44.000 25.15 0.00 36.92 1.40
728 743 3.939740 AGATGAGGAAGCCTAATTGCA 57.060 42.857 0.00 0.00 31.76 4.08
730 745 4.142790 AGATGAGGAAGCCTAATTGCATG 58.857 43.478 0.00 0.00 31.76 4.06
732 747 1.959282 GAGGAAGCCTAATTGCATGGG 59.041 52.381 0.00 0.00 31.76 4.00
733 748 1.288932 AGGAAGCCTAATTGCATGGGT 59.711 47.619 0.00 0.00 28.47 4.51
734 749 1.410153 GGAAGCCTAATTGCATGGGTG 59.590 52.381 0.00 0.00 0.00 4.61
735 750 2.378038 GAAGCCTAATTGCATGGGTGA 58.622 47.619 0.00 0.00 0.00 4.02
736 751 2.530460 AGCCTAATTGCATGGGTGAA 57.470 45.000 0.00 0.00 0.00 3.18
737 752 3.036452 AGCCTAATTGCATGGGTGAAT 57.964 42.857 0.00 0.00 0.00 2.57
738 753 4.183223 AGCCTAATTGCATGGGTGAATA 57.817 40.909 0.00 0.00 0.00 1.75
739 754 4.545678 AGCCTAATTGCATGGGTGAATAA 58.454 39.130 0.00 0.00 0.00 1.40
741 756 6.314120 AGCCTAATTGCATGGGTGAATAATA 58.686 36.000 0.00 0.00 0.00 0.98
742 757 6.782000 AGCCTAATTGCATGGGTGAATAATAA 59.218 34.615 0.00 0.00 0.00 1.40
744 776 7.039784 GCCTAATTGCATGGGTGAATAATAAGA 60.040 37.037 0.00 0.00 0.00 2.10
752 784 6.894735 TGGGTGAATAATAAGACCACCTAA 57.105 37.500 0.00 0.00 44.83 2.69
763 795 5.391312 AAGACCACCTAATTGCATGTTTC 57.609 39.130 0.00 0.00 0.00 2.78
764 796 4.406456 AGACCACCTAATTGCATGTTTCA 58.594 39.130 0.00 0.00 0.00 2.69
765 797 5.018809 AGACCACCTAATTGCATGTTTCAT 58.981 37.500 0.00 0.00 0.00 2.57
767 799 6.663093 AGACCACCTAATTGCATGTTTCATTA 59.337 34.615 0.00 0.00 0.00 1.90
771 803 8.997323 CCACCTAATTGCATGTTTCATTAAAAA 58.003 29.630 0.00 0.00 0.00 1.94
776 808 5.296151 TGCATGTTTCATTAAAAACCCCA 57.704 34.783 0.00 0.00 38.16 4.96
777 809 5.684704 TGCATGTTTCATTAAAAACCCCAA 58.315 33.333 0.00 0.00 38.16 4.12
778 810 6.122277 TGCATGTTTCATTAAAAACCCCAAA 58.878 32.000 0.00 0.00 38.16 3.28
800 3989 4.494350 AAAATCAGAGATGCACACACAC 57.506 40.909 0.00 0.00 0.00 3.82
804 3994 0.104855 AGAGATGCACACACACACGT 59.895 50.000 0.00 0.00 0.00 4.49
809 3999 0.100146 TGCACACACACACGTACGTA 59.900 50.000 22.34 0.00 0.00 3.57
823 4013 4.980988 CGTACGTACGTTAATGGAAGTC 57.019 45.455 33.95 0.20 44.13 3.01
824 4014 3.474961 CGTACGTACGTTAATGGAAGTCG 59.525 47.826 33.95 8.79 44.13 4.18
825 4015 3.829886 ACGTACGTTAATGGAAGTCGA 57.170 42.857 16.72 0.00 0.00 4.20
826 4016 4.361451 ACGTACGTTAATGGAAGTCGAT 57.639 40.909 16.72 0.00 0.00 3.59
828 4018 5.163513 ACGTACGTTAATGGAAGTCGATTT 58.836 37.500 16.72 0.00 0.00 2.17
829 4019 5.634859 ACGTACGTTAATGGAAGTCGATTTT 59.365 36.000 16.72 0.00 0.00 1.82
830 4020 5.949787 CGTACGTTAATGGAAGTCGATTTTG 59.050 40.000 7.22 0.00 0.00 2.44
831 4021 4.719040 ACGTTAATGGAAGTCGATTTTGC 58.281 39.130 0.00 0.00 0.00 3.68
832 4022 4.095610 CGTTAATGGAAGTCGATTTTGCC 58.904 43.478 0.00 0.00 0.00 4.52
833 4023 4.378978 CGTTAATGGAAGTCGATTTTGCCA 60.379 41.667 3.96 3.96 0.00 4.92
834 4024 5.650543 GTTAATGGAAGTCGATTTTGCCAT 58.349 37.500 7.75 7.75 37.71 4.40
835 4025 4.806640 AATGGAAGTCGATTTTGCCATT 57.193 36.364 16.30 16.30 40.29 3.16
853 4082 1.851021 TTGCAAATGGACGCGGTGAG 61.851 55.000 12.47 0.00 0.00 3.51
856 4831 1.079127 AAATGGACGCGGTGAGGAG 60.079 57.895 12.47 0.00 0.00 3.69
868 4843 0.684153 GTGAGGAGCTCTCTCTGCCT 60.684 60.000 23.96 10.01 42.86 4.75
871 4846 2.412937 GAGCTCTCTCTGCCTCGC 59.587 66.667 6.43 0.00 36.42 5.03
872 4847 2.044053 AGCTCTCTCTGCCTCGCT 60.044 61.111 0.00 0.00 0.00 4.93
873 4848 2.063541 GAGCTCTCTCTGCCTCGCTC 62.064 65.000 6.43 0.00 37.35 5.03
874 4849 2.715005 CTCTCTCTGCCTCGCTCG 59.285 66.667 0.00 0.00 0.00 5.03
875 4850 2.045829 TCTCTCTGCCTCGCTCGT 60.046 61.111 0.00 0.00 0.00 4.18
877 4852 2.359975 TCTCTGCCTCGCTCGTGA 60.360 61.111 0.00 0.00 0.00 4.35
878 4853 2.101965 CTCTGCCTCGCTCGTGAG 59.898 66.667 0.58 0.58 35.70 3.51
888 4863 4.900154 CTCGTGAGGAGCACTTCC 57.100 61.111 0.00 0.00 45.49 3.46
933 7504 0.610174 TTCCTCGCAGTCTGCTCATT 59.390 50.000 22.13 0.00 42.25 2.57
982 7567 1.231641 CTTCCCCAAACCACCACCA 59.768 57.895 0.00 0.00 0.00 4.17
985 7570 2.280416 CCCAAACCACCACCACCA 59.720 61.111 0.00 0.00 0.00 4.17
1116 7701 2.703798 CGCCATGCTCCCCAACTTG 61.704 63.158 0.00 0.00 0.00 3.16
1152 7737 2.498726 CTGCTCTCCGCCCTCTTC 59.501 66.667 0.00 0.00 38.05 2.87
1208 7794 2.045242 CGTCCTCTCCGACCTCCA 60.045 66.667 0.00 0.00 0.00 3.86
1209 7795 2.408241 CGTCCTCTCCGACCTCCAC 61.408 68.421 0.00 0.00 0.00 4.02
1210 7796 2.045242 TCCTCTCCGACCTCCACG 60.045 66.667 0.00 0.00 0.00 4.94
1438 8027 2.280797 GGCTGGTCTGCACGTTCA 60.281 61.111 0.00 0.00 34.04 3.18
1441 8030 0.671781 GCTGGTCTGCACGTTCATCT 60.672 55.000 0.00 0.00 0.00 2.90
1538 8154 0.659957 GCTCCGAACAAGATCATGCC 59.340 55.000 0.00 0.00 0.00 4.40
1650 8266 2.125512 GACGCCATGCTCTTCCGT 60.126 61.111 0.00 0.00 34.52 4.69
1949 8572 3.736482 GAGTACGAGCGGCCGTCAG 62.736 68.421 28.70 19.65 43.20 3.51
1950 8573 4.112341 GTACGAGCGGCCGTCAGT 62.112 66.667 28.70 24.11 43.20 3.41
1951 8574 3.807538 TACGAGCGGCCGTCAGTC 61.808 66.667 28.70 16.88 43.20 3.51
2007 8630 4.759564 GCAGATTGCAGCAACTCG 57.240 55.556 10.85 2.44 44.26 4.18
2012 8635 2.262471 GATTGCAGCAACTCGGCCTG 62.262 60.000 10.85 0.00 34.87 4.85
2025 8650 2.191375 GCCTGGCTAGCTGCATCA 59.809 61.111 15.72 2.34 45.15 3.07
2073 8698 7.116519 AGCTACGTGAAGAAGATTTGACTTAAC 59.883 37.037 0.00 0.00 0.00 2.01
2077 8702 7.599245 ACGTGAAGAAGATTTGACTTAACTAGG 59.401 37.037 0.00 0.00 0.00 3.02
2078 8703 7.813148 CGTGAAGAAGATTTGACTTAACTAGGA 59.187 37.037 0.00 0.00 0.00 2.94
2079 8704 9.145865 GTGAAGAAGATTTGACTTAACTAGGAG 57.854 37.037 0.00 0.00 0.00 3.69
2167 8961 2.094906 CGGATATGCATGCTTGGGATTG 60.095 50.000 20.33 0.00 0.00 2.67
2179 8979 5.693961 TGCTTGGGATTGTATATGTGTGAT 58.306 37.500 0.00 0.00 0.00 3.06
2194 8994 2.476619 GTGTGATGGTTTGTGAGACTCG 59.523 50.000 0.00 0.00 0.00 4.18
2196 8996 2.989840 GTGATGGTTTGTGAGACTCGAG 59.010 50.000 11.84 11.84 0.00 4.04
2197 8997 2.628178 TGATGGTTTGTGAGACTCGAGT 59.372 45.455 20.18 20.18 0.00 4.18
2198 8998 3.824443 TGATGGTTTGTGAGACTCGAGTA 59.176 43.478 20.09 0.00 0.00 2.59
2207 9265 2.290387 TGAGACTCGAGTAGGAGTGCTT 60.290 50.000 20.09 0.00 46.85 3.91
2239 9297 6.647067 AGCTAGTACAACTGTTTAAGCTTGAG 59.353 38.462 9.86 2.24 33.87 3.02
2257 9317 4.647424 TGAGAAATTTGCAGAAACCGTT 57.353 36.364 0.00 0.00 0.00 4.44
2278 9341 8.201464 ACCGTTATTTTGTTCTTTTTCTTGGAT 58.799 29.630 0.00 0.00 0.00 3.41
2296 9359 7.509546 TCTTGGATATGGGAAGAAGAATGTAC 58.490 38.462 0.00 0.00 0.00 2.90
2325 9388 3.695825 ACGGGAGGACCAGGGGAT 61.696 66.667 0.00 0.00 40.22 3.85
2328 9391 1.152008 GGGAGGACCAGGGGATAGG 60.152 68.421 0.00 0.00 39.85 2.57
2329 9392 1.152008 GGAGGACCAGGGGATAGGG 60.152 68.421 0.00 0.00 35.97 3.53
2337 9400 0.183731 CAGGGGATAGGGCTCCAAAC 59.816 60.000 0.00 0.00 37.01 2.93
2406 9470 6.860023 GCATCCATCACATCTTTTATTACTGC 59.140 38.462 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.519730 AGTATTCTAGGTAGCATCGGTCAC 59.480 45.833 0.00 0.00 0.00 3.67
1 2 4.726583 AGTATTCTAGGTAGCATCGGTCA 58.273 43.478 0.00 0.00 0.00 4.02
2 3 4.156373 GGAGTATTCTAGGTAGCATCGGTC 59.844 50.000 0.00 0.00 0.00 4.79
3 4 4.080687 GGAGTATTCTAGGTAGCATCGGT 58.919 47.826 0.00 0.00 0.00 4.69
4 5 4.337145 AGGAGTATTCTAGGTAGCATCGG 58.663 47.826 0.00 0.00 0.00 4.18
5 6 5.968528 AAGGAGTATTCTAGGTAGCATCG 57.031 43.478 0.00 0.00 0.00 3.84
6 7 7.533289 AGAAAGGAGTATTCTAGGTAGCATC 57.467 40.000 0.00 0.00 35.43 3.91
7 8 7.922699 AAGAAAGGAGTATTCTAGGTAGCAT 57.077 36.000 0.00 0.00 36.14 3.79
8 9 7.735326 AAAGAAAGGAGTATTCTAGGTAGCA 57.265 36.000 0.00 0.00 36.14 3.49
9 10 9.100554 GAAAAAGAAAGGAGTATTCTAGGTAGC 57.899 37.037 0.00 0.00 36.14 3.58
10 11 9.602568 GGAAAAAGAAAGGAGTATTCTAGGTAG 57.397 37.037 0.00 0.00 36.14 3.18
11 12 8.546322 GGGAAAAAGAAAGGAGTATTCTAGGTA 58.454 37.037 0.00 0.00 36.14 3.08
12 13 7.239984 AGGGAAAAAGAAAGGAGTATTCTAGGT 59.760 37.037 0.00 0.00 36.14 3.08
13 14 7.634718 AGGGAAAAAGAAAGGAGTATTCTAGG 58.365 38.462 0.00 0.00 36.14 3.02
14 15 9.602568 GTAGGGAAAAAGAAAGGAGTATTCTAG 57.397 37.037 0.00 0.00 36.14 2.43
15 16 9.335211 AGTAGGGAAAAAGAAAGGAGTATTCTA 57.665 33.333 0.00 0.00 36.14 2.10
16 17 8.220898 AGTAGGGAAAAAGAAAGGAGTATTCT 57.779 34.615 0.00 0.00 38.75 2.40
17 18 9.381033 GTAGTAGGGAAAAAGAAAGGAGTATTC 57.619 37.037 0.00 0.00 0.00 1.75
18 19 8.887393 TGTAGTAGGGAAAAAGAAAGGAGTATT 58.113 33.333 0.00 0.00 0.00 1.89
19 20 8.319881 GTGTAGTAGGGAAAAAGAAAGGAGTAT 58.680 37.037 0.00 0.00 0.00 2.12
82 88 5.595952 ACCGATAAATTAAGACGGAGGTAGT 59.404 40.000 17.89 0.00 45.31 2.73
83 89 6.081872 ACCGATAAATTAAGACGGAGGTAG 57.918 41.667 17.89 0.00 45.31 3.18
84 90 6.461509 GGAACCGATAAATTAAGACGGAGGTA 60.462 42.308 17.89 0.00 45.31 3.08
85 91 5.349061 AACCGATAAATTAAGACGGAGGT 57.651 39.130 17.89 2.28 45.31 3.85
87 93 4.748600 GGGAACCGATAAATTAAGACGGAG 59.251 45.833 17.89 0.66 45.31 4.63
88 94 4.696455 GGGAACCGATAAATTAAGACGGA 58.304 43.478 17.89 0.00 45.31 4.69
142 148 9.113838 ACATGCATTAACATTTTGTTGGTTAAA 57.886 25.926 0.00 0.00 41.30 1.52
143 149 8.668510 ACATGCATTAACATTTTGTTGGTTAA 57.331 26.923 0.00 0.00 41.30 2.01
144 150 7.115520 CGACATGCATTAACATTTTGTTGGTTA 59.884 33.333 0.00 0.00 41.30 2.85
145 151 6.073873 CGACATGCATTAACATTTTGTTGGTT 60.074 34.615 0.00 0.00 41.30 3.67
146 152 5.404968 CGACATGCATTAACATTTTGTTGGT 59.595 36.000 0.00 0.00 41.30 3.67
147 153 5.404968 ACGACATGCATTAACATTTTGTTGG 59.595 36.000 0.00 0.00 41.30 3.77
148 154 6.450845 ACGACATGCATTAACATTTTGTTG 57.549 33.333 0.00 0.00 41.30 3.33
149 155 8.581057 TTTACGACATGCATTAACATTTTGTT 57.419 26.923 0.00 0.00 43.88 2.83
150 156 8.581057 TTTTACGACATGCATTAACATTTTGT 57.419 26.923 0.00 0.00 31.06 2.83
190 196 9.748708 CGATGGATTCATATTTAAACATGGTTT 57.251 29.630 0.00 0.00 32.98 3.27
191 197 8.359642 CCGATGGATTCATATTTAAACATGGTT 58.640 33.333 6.62 0.00 32.98 3.67
192 198 7.505585 ACCGATGGATTCATATTTAAACATGGT 59.494 33.333 6.62 0.00 32.98 3.55
193 199 7.885297 ACCGATGGATTCATATTTAAACATGG 58.115 34.615 6.62 3.52 32.98 3.66
265 271 9.485591 CCTACGTAATGTGTATCAAATTTTGAC 57.514 33.333 13.80 4.26 43.48 3.18
266 272 8.670135 CCCTACGTAATGTGTATCAAATTTTGA 58.330 33.333 13.88 13.88 45.01 2.69
267 273 8.670135 TCCCTACGTAATGTGTATCAAATTTTG 58.330 33.333 2.59 2.59 0.00 2.44
268 274 8.795842 TCCCTACGTAATGTGTATCAAATTTT 57.204 30.769 0.00 0.00 0.00 1.82
269 275 8.671028 GTTCCCTACGTAATGTGTATCAAATTT 58.329 33.333 0.00 0.00 0.00 1.82
270 276 8.044908 AGTTCCCTACGTAATGTGTATCAAATT 58.955 33.333 0.00 0.00 0.00 1.82
271 277 7.562135 AGTTCCCTACGTAATGTGTATCAAAT 58.438 34.615 0.00 0.00 0.00 2.32
272 278 6.938507 AGTTCCCTACGTAATGTGTATCAAA 58.061 36.000 0.00 0.00 0.00 2.69
273 279 6.534475 AGTTCCCTACGTAATGTGTATCAA 57.466 37.500 0.00 0.00 0.00 2.57
274 280 7.643569 TTAGTTCCCTACGTAATGTGTATCA 57.356 36.000 0.00 0.00 0.00 2.15
277 283 9.801873 GTTTATTAGTTCCCTACGTAATGTGTA 57.198 33.333 0.00 0.00 0.00 2.90
278 284 7.489113 CGTTTATTAGTTCCCTACGTAATGTGT 59.511 37.037 0.00 0.00 0.00 3.72
279 285 7.701924 TCGTTTATTAGTTCCCTACGTAATGTG 59.298 37.037 0.00 0.00 0.00 3.21
280 286 7.771183 TCGTTTATTAGTTCCCTACGTAATGT 58.229 34.615 0.00 0.00 0.00 2.71
281 287 7.380602 CCTCGTTTATTAGTTCCCTACGTAATG 59.619 40.741 0.00 0.00 0.00 1.90
282 288 7.285401 TCCTCGTTTATTAGTTCCCTACGTAAT 59.715 37.037 0.00 0.00 0.00 1.89
283 289 6.601613 TCCTCGTTTATTAGTTCCCTACGTAA 59.398 38.462 0.00 0.00 0.00 3.18
284 290 6.038271 GTCCTCGTTTATTAGTTCCCTACGTA 59.962 42.308 0.00 0.00 0.00 3.57
285 291 4.949856 TCCTCGTTTATTAGTTCCCTACGT 59.050 41.667 0.00 0.00 0.00 3.57
286 292 5.277047 GTCCTCGTTTATTAGTTCCCTACG 58.723 45.833 0.00 0.00 0.00 3.51
287 293 5.066505 TCGTCCTCGTTTATTAGTTCCCTAC 59.933 44.000 0.00 0.00 38.33 3.18
288 294 5.192927 TCGTCCTCGTTTATTAGTTCCCTA 58.807 41.667 0.00 0.00 38.33 3.53
289 295 4.019174 TCGTCCTCGTTTATTAGTTCCCT 58.981 43.478 0.00 0.00 38.33 4.20
290 296 4.376340 TCGTCCTCGTTTATTAGTTCCC 57.624 45.455 0.00 0.00 38.33 3.97
291 297 4.802563 CCTTCGTCCTCGTTTATTAGTTCC 59.197 45.833 0.00 0.00 38.33 3.62
292 298 5.405797 ACCTTCGTCCTCGTTTATTAGTTC 58.594 41.667 0.00 0.00 38.33 3.01
293 299 5.397142 ACCTTCGTCCTCGTTTATTAGTT 57.603 39.130 0.00 0.00 38.33 2.24
294 300 5.882557 TCTACCTTCGTCCTCGTTTATTAGT 59.117 40.000 0.00 0.00 38.33 2.24
295 301 6.038050 ACTCTACCTTCGTCCTCGTTTATTAG 59.962 42.308 0.00 0.00 38.33 1.73
296 302 5.882557 ACTCTACCTTCGTCCTCGTTTATTA 59.117 40.000 0.00 0.00 38.33 0.98
297 303 4.704057 ACTCTACCTTCGTCCTCGTTTATT 59.296 41.667 0.00 0.00 38.33 1.40
298 304 4.268359 ACTCTACCTTCGTCCTCGTTTAT 58.732 43.478 0.00 0.00 38.33 1.40
299 305 3.679389 ACTCTACCTTCGTCCTCGTTTA 58.321 45.455 0.00 0.00 38.33 2.01
300 306 2.512705 ACTCTACCTTCGTCCTCGTTT 58.487 47.619 0.00 0.00 38.33 3.60
301 307 2.197283 ACTCTACCTTCGTCCTCGTT 57.803 50.000 0.00 0.00 38.33 3.85
302 308 2.499289 TCTACTCTACCTTCGTCCTCGT 59.501 50.000 0.00 0.00 38.33 4.18
303 309 2.865551 GTCTACTCTACCTTCGTCCTCG 59.134 54.545 0.00 0.00 38.55 4.63
304 310 3.205338 GGTCTACTCTACCTTCGTCCTC 58.795 54.545 0.00 0.00 33.97 3.71
305 311 2.419851 CGGTCTACTCTACCTTCGTCCT 60.420 54.545 0.00 0.00 34.66 3.85
306 312 1.939255 CGGTCTACTCTACCTTCGTCC 59.061 57.143 0.00 0.00 34.66 4.79
307 313 2.865551 CTCGGTCTACTCTACCTTCGTC 59.134 54.545 0.00 0.00 34.66 4.20
308 314 2.419851 CCTCGGTCTACTCTACCTTCGT 60.420 54.545 0.00 0.00 34.66 3.85
309 315 2.211806 CCTCGGTCTACTCTACCTTCG 58.788 57.143 0.00 0.00 34.66 3.79
310 316 2.172293 TCCCTCGGTCTACTCTACCTTC 59.828 54.545 0.00 0.00 34.66 3.46
311 317 2.203584 TCCCTCGGTCTACTCTACCTT 58.796 52.381 0.00 0.00 34.66 3.50
312 318 1.890552 TCCCTCGGTCTACTCTACCT 58.109 55.000 0.00 0.00 34.66 3.08
313 319 2.955342 ATCCCTCGGTCTACTCTACC 57.045 55.000 0.00 0.00 0.00 3.18
314 320 4.067192 GAGAATCCCTCGGTCTACTCTAC 58.933 52.174 0.00 0.00 31.32 2.59
315 321 4.354893 GAGAATCCCTCGGTCTACTCTA 57.645 50.000 0.00 0.00 31.32 2.43
316 322 3.217681 GAGAATCCCTCGGTCTACTCT 57.782 52.381 0.00 0.00 31.32 3.24
343 350 2.582052 TCCAACTCCAAAAACGAGCAT 58.418 42.857 0.00 0.00 0.00 3.79
359 367 1.068885 CGCCAGCGTTACATTTTCCAA 60.069 47.619 3.35 0.00 34.35 3.53
360 368 0.519519 CGCCAGCGTTACATTTTCCA 59.480 50.000 3.35 0.00 34.35 3.53
373 381 3.350912 CACGTAAATGTTATTCGCCAGC 58.649 45.455 0.00 0.00 0.00 4.85
375 383 3.125487 CACCACGTAAATGTTATTCGCCA 59.875 43.478 0.00 0.00 0.00 5.69
377 385 3.371591 TCCACCACGTAAATGTTATTCGC 59.628 43.478 0.00 0.00 0.00 4.70
407 415 1.875576 GCGCCCTCTCTACCAATCATG 60.876 57.143 0.00 0.00 0.00 3.07
408 416 0.394565 GCGCCCTCTCTACCAATCAT 59.605 55.000 0.00 0.00 0.00 2.45
409 417 0.687757 AGCGCCCTCTCTACCAATCA 60.688 55.000 2.29 0.00 0.00 2.57
410 418 0.032815 GAGCGCCCTCTCTACCAATC 59.967 60.000 2.29 0.00 35.16 2.67
411 419 1.403687 GGAGCGCCCTCTCTACCAAT 61.404 60.000 2.29 0.00 38.21 3.16
412 420 2.058595 GGAGCGCCCTCTCTACCAA 61.059 63.158 2.29 0.00 38.21 3.67
413 421 2.442272 GGAGCGCCCTCTCTACCA 60.442 66.667 2.29 0.00 38.21 3.25
414 422 3.597728 CGGAGCGCCCTCTCTACC 61.598 72.222 2.29 0.00 38.21 3.18
415 423 3.597728 CCGGAGCGCCCTCTCTAC 61.598 72.222 2.29 0.00 38.21 2.59
424 432 4.882396 GAAGAGAGGCCGGAGCGC 62.882 72.222 5.05 0.00 41.24 5.92
425 433 4.214327 GGAAGAGAGGCCGGAGCG 62.214 72.222 5.05 0.00 41.24 5.03
426 434 2.376228 GATGGAAGAGAGGCCGGAGC 62.376 65.000 5.05 0.00 38.76 4.70
427 435 1.745264 GATGGAAGAGAGGCCGGAG 59.255 63.158 5.05 0.00 0.00 4.63
428 436 1.762460 GGATGGAAGAGAGGCCGGA 60.762 63.158 5.05 0.00 0.00 5.14
429 437 2.825264 GGATGGAAGAGAGGCCGG 59.175 66.667 0.00 0.00 0.00 6.13
430 438 2.419198 CGGATGGAAGAGAGGCCG 59.581 66.667 0.00 0.00 0.00 6.13
431 439 1.762460 TCCGGATGGAAGAGAGGCC 60.762 63.158 0.00 0.00 42.85 5.19
432 440 3.956377 TCCGGATGGAAGAGAGGC 58.044 61.111 0.00 0.00 42.85 4.70
453 461 6.438425 AGCATTAATCACCCATCTGTCTTTTT 59.562 34.615 0.00 0.00 0.00 1.94
454 462 5.954150 AGCATTAATCACCCATCTGTCTTTT 59.046 36.000 0.00 0.00 0.00 2.27
455 463 5.513233 AGCATTAATCACCCATCTGTCTTT 58.487 37.500 0.00 0.00 0.00 2.52
456 464 5.121380 AGCATTAATCACCCATCTGTCTT 57.879 39.130 0.00 0.00 0.00 3.01
457 465 4.164796 TGAGCATTAATCACCCATCTGTCT 59.835 41.667 0.00 0.00 0.00 3.41
458 466 4.274459 GTGAGCATTAATCACCCATCTGTC 59.726 45.833 0.00 0.00 40.99 3.51
459 467 4.202441 GTGAGCATTAATCACCCATCTGT 58.798 43.478 0.00 0.00 40.99 3.41
460 468 3.249320 CGTGAGCATTAATCACCCATCTG 59.751 47.826 2.82 0.00 43.36 2.90
461 469 3.470709 CGTGAGCATTAATCACCCATCT 58.529 45.455 2.82 0.00 43.36 2.90
465 473 2.325583 TCCGTGAGCATTAATCACCC 57.674 50.000 2.82 0.00 43.36 4.61
472 480 1.943968 GCCACACTTCCGTGAGCATTA 60.944 52.381 0.00 0.00 43.97 1.90
473 481 1.237285 GCCACACTTCCGTGAGCATT 61.237 55.000 0.00 0.00 43.97 3.56
480 488 0.685097 ATACACAGCCACACTTCCGT 59.315 50.000 0.00 0.00 0.00 4.69
492 500 3.561310 GCATACACCACCATGATACACAG 59.439 47.826 0.00 0.00 0.00 3.66
494 502 3.540617 TGCATACACCACCATGATACAC 58.459 45.455 0.00 0.00 0.00 2.90
495 503 3.922171 TGCATACACCACCATGATACA 57.078 42.857 0.00 0.00 0.00 2.29
496 504 4.645535 AGATGCATACACCACCATGATAC 58.354 43.478 0.00 0.00 0.00 2.24
497 505 4.263025 GGAGATGCATACACCACCATGATA 60.263 45.833 0.00 0.00 0.00 2.15
498 506 3.497405 GGAGATGCATACACCACCATGAT 60.497 47.826 0.00 0.00 0.00 2.45
499 507 2.158769 GGAGATGCATACACCACCATGA 60.159 50.000 0.00 0.00 0.00 3.07
500 508 2.158711 AGGAGATGCATACACCACCATG 60.159 50.000 0.00 0.00 0.00 3.66
501 509 2.130193 AGGAGATGCATACACCACCAT 58.870 47.619 0.00 0.00 0.00 3.55
502 510 1.583556 AGGAGATGCATACACCACCA 58.416 50.000 0.00 0.00 0.00 4.17
503 511 3.615110 CGATAGGAGATGCATACACCACC 60.615 52.174 0.00 0.00 0.00 4.61
504 512 3.005897 ACGATAGGAGATGCATACACCAC 59.994 47.826 0.00 0.00 43.77 4.16
505 513 3.005791 CACGATAGGAGATGCATACACCA 59.994 47.826 0.00 0.00 43.77 4.17
506 514 3.005897 ACACGATAGGAGATGCATACACC 59.994 47.826 0.00 3.55 43.77 4.16
507 515 4.244425 ACACGATAGGAGATGCATACAC 57.756 45.455 0.00 0.00 43.77 2.90
508 516 5.535030 ACTTACACGATAGGAGATGCATACA 59.465 40.000 0.00 0.00 43.77 2.29
509 517 5.859114 CACTTACACGATAGGAGATGCATAC 59.141 44.000 0.00 0.00 43.77 2.39
510 518 5.535030 ACACTTACACGATAGGAGATGCATA 59.465 40.000 0.00 0.00 43.77 3.14
511 519 4.342378 ACACTTACACGATAGGAGATGCAT 59.658 41.667 0.00 0.00 43.77 3.96
512 520 3.699538 ACACTTACACGATAGGAGATGCA 59.300 43.478 0.00 0.00 43.77 3.96
513 521 4.045104 CACACTTACACGATAGGAGATGC 58.955 47.826 0.00 0.00 43.77 3.91
514 522 4.098044 ACCACACTTACACGATAGGAGATG 59.902 45.833 0.00 0.00 43.77 2.90
515 523 4.098044 CACCACACTTACACGATAGGAGAT 59.902 45.833 0.00 0.00 43.77 2.75
516 524 3.442625 CACCACACTTACACGATAGGAGA 59.557 47.826 0.00 0.00 43.77 3.71
517 525 3.428999 CCACCACACTTACACGATAGGAG 60.429 52.174 0.00 0.00 43.77 3.69
518 526 2.494471 CCACCACACTTACACGATAGGA 59.506 50.000 0.00 0.00 43.77 2.94
519 527 2.232941 ACCACCACACTTACACGATAGG 59.767 50.000 0.00 0.00 43.77 2.57
520 528 3.250744 CACCACCACACTTACACGATAG 58.749 50.000 0.00 0.00 46.19 2.08
521 529 2.610976 GCACCACCACACTTACACGATA 60.611 50.000 0.00 0.00 0.00 2.92
522 530 1.876416 GCACCACCACACTTACACGAT 60.876 52.381 0.00 0.00 0.00 3.73
523 531 0.531090 GCACCACCACACTTACACGA 60.531 55.000 0.00 0.00 0.00 4.35
524 532 1.827315 CGCACCACCACACTTACACG 61.827 60.000 0.00 0.00 0.00 4.49
525 533 0.812412 ACGCACCACCACACTTACAC 60.812 55.000 0.00 0.00 0.00 2.90
526 534 0.107606 AACGCACCACCACACTTACA 60.108 50.000 0.00 0.00 0.00 2.41
527 535 1.003223 GAAACGCACCACCACACTTAC 60.003 52.381 0.00 0.00 0.00 2.34
528 536 1.301423 GAAACGCACCACCACACTTA 58.699 50.000 0.00 0.00 0.00 2.24
529 537 1.711060 CGAAACGCACCACCACACTT 61.711 55.000 0.00 0.00 0.00 3.16
530 538 2.177580 CGAAACGCACCACCACACT 61.178 57.895 0.00 0.00 0.00 3.55
531 539 1.152989 TACGAAACGCACCACCACAC 61.153 55.000 0.00 0.00 0.00 3.82
532 540 0.461516 TTACGAAACGCACCACCACA 60.462 50.000 0.00 0.00 0.00 4.17
533 541 0.233848 CTTACGAAACGCACCACCAC 59.766 55.000 0.00 0.00 0.00 4.16
534 542 0.104487 TCTTACGAAACGCACCACCA 59.896 50.000 0.00 0.00 0.00 4.17
535 543 1.219646 TTCTTACGAAACGCACCACC 58.780 50.000 0.00 0.00 0.00 4.61
536 544 2.477375 TGATTCTTACGAAACGCACCAC 59.523 45.455 0.00 0.00 31.91 4.16
537 545 2.756829 TGATTCTTACGAAACGCACCA 58.243 42.857 0.00 0.00 31.91 4.17
538 546 3.799137 TTGATTCTTACGAAACGCACC 57.201 42.857 0.00 0.00 31.91 5.01
539 547 4.953269 TCATTGATTCTTACGAAACGCAC 58.047 39.130 0.00 0.00 31.91 5.34
540 548 5.447144 CCATCATTGATTCTTACGAAACGCA 60.447 40.000 0.00 0.00 31.91 5.24
541 549 4.963953 CCATCATTGATTCTTACGAAACGC 59.036 41.667 0.00 0.00 31.91 4.84
542 550 4.963953 GCCATCATTGATTCTTACGAAACG 59.036 41.667 0.00 0.00 31.91 3.60
543 551 4.963953 CGCCATCATTGATTCTTACGAAAC 59.036 41.667 0.00 0.00 31.91 2.78
544 552 4.035091 CCGCCATCATTGATTCTTACGAAA 59.965 41.667 0.00 0.00 31.91 3.46
545 553 3.559655 CCGCCATCATTGATTCTTACGAA 59.440 43.478 0.00 0.00 0.00 3.85
546 554 3.130633 CCGCCATCATTGATTCTTACGA 58.869 45.455 0.00 0.00 0.00 3.43
547 555 2.872245 ACCGCCATCATTGATTCTTACG 59.128 45.455 0.00 0.00 0.00 3.18
548 556 3.003689 CCACCGCCATCATTGATTCTTAC 59.996 47.826 0.00 0.00 0.00 2.34
549 557 3.213506 CCACCGCCATCATTGATTCTTA 58.786 45.455 0.00 0.00 0.00 2.10
550 558 2.026641 CCACCGCCATCATTGATTCTT 58.973 47.619 0.00 0.00 0.00 2.52
551 559 1.683943 CCACCGCCATCATTGATTCT 58.316 50.000 0.00 0.00 0.00 2.40
552 560 0.031178 GCCACCGCCATCATTGATTC 59.969 55.000 0.00 0.00 0.00 2.52
553 561 0.683828 TGCCACCGCCATCATTGATT 60.684 50.000 0.00 0.00 0.00 2.57
554 562 0.683828 TTGCCACCGCCATCATTGAT 60.684 50.000 0.00 0.00 0.00 2.57
555 563 1.303970 TTGCCACCGCCATCATTGA 60.304 52.632 0.00 0.00 0.00 2.57
556 564 1.140161 CTTGCCACCGCCATCATTG 59.860 57.895 0.00 0.00 0.00 2.82
557 565 2.713967 GCTTGCCACCGCCATCATT 61.714 57.895 0.00 0.00 0.00 2.57
558 566 3.142838 GCTTGCCACCGCCATCAT 61.143 61.111 0.00 0.00 0.00 2.45
559 567 3.866379 AAGCTTGCCACCGCCATCA 62.866 57.895 0.00 0.00 0.00 3.07
560 568 1.312371 TAAAGCTTGCCACCGCCATC 61.312 55.000 0.00 0.00 0.00 3.51
561 569 0.684153 ATAAAGCTTGCCACCGCCAT 60.684 50.000 0.00 0.00 0.00 4.40
562 570 0.897863 AATAAAGCTTGCCACCGCCA 60.898 50.000 0.00 0.00 0.00 5.69
563 571 0.246360 AAATAAAGCTTGCCACCGCC 59.754 50.000 0.00 0.00 0.00 6.13
564 572 2.931512 TAAATAAAGCTTGCCACCGC 57.068 45.000 0.00 0.00 0.00 5.68
565 573 3.130340 ACCATAAATAAAGCTTGCCACCG 59.870 43.478 0.00 0.00 0.00 4.94
566 574 4.432712 CACCATAAATAAAGCTTGCCACC 58.567 43.478 0.00 0.00 0.00 4.61
567 575 3.865164 GCACCATAAATAAAGCTTGCCAC 59.135 43.478 0.00 0.00 0.00 5.01
568 576 3.428725 CGCACCATAAATAAAGCTTGCCA 60.429 43.478 0.00 0.00 0.00 4.92
569 577 3.115554 CGCACCATAAATAAAGCTTGCC 58.884 45.455 0.00 0.00 0.00 4.52
570 578 2.535574 GCGCACCATAAATAAAGCTTGC 59.464 45.455 0.30 0.00 0.00 4.01
571 579 2.783284 CGCGCACCATAAATAAAGCTTG 59.217 45.455 8.75 0.00 0.00 4.01
611 619 1.451936 GGAGGGAGCGCACCATAAT 59.548 57.895 25.48 7.97 0.00 1.28
612 620 2.742116 GGGAGGGAGCGCACCATAA 61.742 63.158 25.48 0.00 0.00 1.90
613 621 3.161450 GGGAGGGAGCGCACCATA 61.161 66.667 25.48 0.00 0.00 2.74
616 624 4.864334 CATGGGAGGGAGCGCACC 62.864 72.222 16.31 16.31 33.34 5.01
617 625 4.101448 ACATGGGAGGGAGCGCAC 62.101 66.667 11.47 1.97 33.34 5.34
618 626 4.100084 CACATGGGAGGGAGCGCA 62.100 66.667 11.47 0.00 35.10 6.09
619 627 4.864334 CCACATGGGAGGGAGCGC 62.864 72.222 0.00 0.00 40.01 5.92
620 628 4.864334 GCCACATGGGAGGGAGCG 62.864 72.222 0.00 0.00 40.01 5.03
621 629 4.512914 GGCCACATGGGAGGGAGC 62.513 72.222 0.00 0.00 40.01 4.70
622 630 3.016971 TGGCCACATGGGAGGGAG 61.017 66.667 0.00 0.00 40.01 4.30
623 631 3.338250 GTGGCCACATGGGAGGGA 61.338 66.667 31.23 0.00 40.01 4.20
624 632 4.802051 CGTGGCCACATGGGAGGG 62.802 72.222 34.16 12.56 40.01 4.30
625 633 3.687321 CTCGTGGCCACATGGGAGG 62.687 68.421 34.16 16.79 36.10 4.30
626 634 2.124983 CTCGTGGCCACATGGGAG 60.125 66.667 34.16 26.33 36.10 4.30
627 635 4.408821 GCTCGTGGCCACATGGGA 62.409 66.667 34.16 21.73 36.10 4.37
640 648 1.111116 AATGGAATGGCATGGGCTCG 61.111 55.000 0.00 0.00 40.87 5.03
670 685 0.668706 CTCAGACCCTCTGTTGCACG 60.669 60.000 0.00 0.00 44.58 5.34
683 698 2.294074 AGCTGGTCTATCGTCTCAGAC 58.706 52.381 0.00 0.00 40.40 3.51
706 721 4.965814 TGCAATTAGGCTTCCTCATCTAG 58.034 43.478 0.00 0.00 34.61 2.43
708 723 3.939740 TGCAATTAGGCTTCCTCATCT 57.060 42.857 0.00 0.00 34.61 2.90
709 724 3.255149 CCATGCAATTAGGCTTCCTCATC 59.745 47.826 0.00 0.00 34.61 2.92
711 726 2.658285 CCATGCAATTAGGCTTCCTCA 58.342 47.619 0.00 0.00 34.61 3.86
712 727 1.959282 CCCATGCAATTAGGCTTCCTC 59.041 52.381 0.00 0.00 34.61 3.71
714 729 1.410153 CACCCATGCAATTAGGCTTCC 59.590 52.381 0.00 0.00 34.04 3.46
715 730 2.378038 TCACCCATGCAATTAGGCTTC 58.622 47.619 0.00 0.00 34.04 3.86
716 731 2.530460 TCACCCATGCAATTAGGCTT 57.470 45.000 0.00 0.00 34.04 4.35
718 733 4.935352 TTATTCACCCATGCAATTAGGC 57.065 40.909 0.00 0.00 0.00 3.93
719 734 8.299570 GTCTTATTATTCACCCATGCAATTAGG 58.700 37.037 0.00 0.00 0.00 2.69
720 735 8.299570 GGTCTTATTATTCACCCATGCAATTAG 58.700 37.037 0.00 0.00 0.00 1.73
721 736 7.782168 TGGTCTTATTATTCACCCATGCAATTA 59.218 33.333 0.00 0.00 0.00 1.40
722 737 6.610830 TGGTCTTATTATTCACCCATGCAATT 59.389 34.615 0.00 0.00 0.00 2.32
724 739 5.359576 GTGGTCTTATTATTCACCCATGCAA 59.640 40.000 0.00 0.00 0.00 4.08
725 740 4.887071 GTGGTCTTATTATTCACCCATGCA 59.113 41.667 0.00 0.00 0.00 3.96
728 743 5.994416 AGGTGGTCTTATTATTCACCCAT 57.006 39.130 7.12 0.00 46.47 4.00
730 745 7.255486 GCAATTAGGTGGTCTTATTATTCACCC 60.255 40.741 7.12 0.00 46.47 4.61
732 747 8.220755 TGCAATTAGGTGGTCTTATTATTCAC 57.779 34.615 0.00 0.00 0.00 3.18
733 748 8.849168 CATGCAATTAGGTGGTCTTATTATTCA 58.151 33.333 0.00 0.00 0.00 2.57
734 749 8.850156 ACATGCAATTAGGTGGTCTTATTATTC 58.150 33.333 0.00 0.00 0.00 1.75
735 750 8.766994 ACATGCAATTAGGTGGTCTTATTATT 57.233 30.769 0.00 0.00 0.00 1.40
736 751 8.766994 AACATGCAATTAGGTGGTCTTATTAT 57.233 30.769 0.00 0.00 0.00 1.28
737 752 8.588290 AAACATGCAATTAGGTGGTCTTATTA 57.412 30.769 0.00 0.00 0.00 0.98
738 753 7.178274 TGAAACATGCAATTAGGTGGTCTTATT 59.822 33.333 0.00 0.00 0.00 1.40
739 754 6.663093 TGAAACATGCAATTAGGTGGTCTTAT 59.337 34.615 0.00 0.00 0.00 1.73
741 756 4.832266 TGAAACATGCAATTAGGTGGTCTT 59.168 37.500 0.00 0.00 0.00 3.01
742 757 4.406456 TGAAACATGCAATTAGGTGGTCT 58.594 39.130 0.00 0.00 0.00 3.85
744 776 5.743636 AATGAAACATGCAATTAGGTGGT 57.256 34.783 0.00 0.00 0.00 4.16
752 784 6.302269 TGGGGTTTTTAATGAAACATGCAAT 58.698 32.000 0.00 0.00 40.44 3.56
778 810 4.338964 TGTGTGTGTGCATCTCTGATTTTT 59.661 37.500 0.00 0.00 0.00 1.94
788 2790 0.160813 CGTACGTGTGTGTGTGCATC 59.839 55.000 7.22 0.00 0.00 3.91
804 3994 4.937696 TCGACTTCCATTAACGTACGTA 57.062 40.909 23.12 7.43 0.00 3.57
809 3999 4.379082 GGCAAAATCGACTTCCATTAACGT 60.379 41.667 0.00 0.00 0.00 3.99
814 4004 4.497300 CAATGGCAAAATCGACTTCCATT 58.503 39.130 6.72 6.72 42.93 3.16
815 4005 3.676873 GCAATGGCAAAATCGACTTCCAT 60.677 43.478 0.00 0.00 40.72 3.41
816 4006 2.352617 GCAATGGCAAAATCGACTTCCA 60.353 45.455 0.00 0.00 40.72 3.53
830 4020 2.160221 CGCGTCCATTTGCAATGGC 61.160 57.895 17.94 13.49 39.01 4.40
831 4021 1.516821 CCGCGTCCATTTGCAATGG 60.517 57.895 17.09 17.09 40.48 3.16
832 4022 1.072116 CACCGCGTCCATTTGCAATG 61.072 55.000 4.92 0.75 0.00 2.82
833 4023 1.212490 CACCGCGTCCATTTGCAAT 59.788 52.632 4.92 0.00 0.00 3.56
834 4024 1.851021 CTCACCGCGTCCATTTGCAA 61.851 55.000 4.92 0.00 0.00 4.08
835 4025 2.281139 TCACCGCGTCCATTTGCA 60.281 55.556 4.92 0.00 0.00 4.08
838 4028 1.079127 CTCCTCACCGCGTCCATTT 60.079 57.895 4.92 0.00 0.00 2.32
842 4071 4.500116 GAGCTCCTCACCGCGTCC 62.500 72.222 4.92 0.00 0.00 4.79
853 4082 3.119193 CGAGGCAGAGAGAGCTCC 58.881 66.667 10.93 1.70 42.30 4.70
856 4831 2.412937 GAGCGAGGCAGAGAGAGC 59.587 66.667 0.00 0.00 0.00 4.09
878 4853 2.003301 GAACATCGAAGGAAGTGCTCC 58.997 52.381 0.00 0.00 45.81 4.70
887 4862 3.378427 GGAAAGGGAATGAACATCGAAGG 59.622 47.826 0.00 0.00 0.00 3.46
888 4863 3.378427 GGGAAAGGGAATGAACATCGAAG 59.622 47.826 0.00 0.00 0.00 3.79
933 7504 2.310779 ACTGACTGCTACTGAAGGGA 57.689 50.000 0.00 0.00 0.00 4.20
985 7570 1.153628 GCATTCGAGCACGTAGGGT 60.154 57.895 2.86 0.00 40.69 4.34
1146 7731 2.498726 GAGCTGGCGAGGAAGAGG 59.501 66.667 0.00 0.00 0.00 3.69
1259 7848 3.382832 CGGCCACGAGGAGGAAGT 61.383 66.667 2.24 0.00 44.60 3.01
1425 8014 0.716108 CGAAGATGAACGTGCAGACC 59.284 55.000 1.02 0.00 0.00 3.85
1525 8135 1.935873 CATCGTCGGCATGATCTTGTT 59.064 47.619 10.05 0.00 0.00 2.83
1538 8154 3.250323 CGAGCAGGTGCATCGTCG 61.250 66.667 4.48 5.26 45.16 5.12
1588 8204 2.425592 CTGGCACACCACGGAGAA 59.574 61.111 0.00 0.00 42.67 2.87
1591 8207 4.624364 CAGCTGGCACACCACGGA 62.624 66.667 5.57 0.00 42.67 4.69
1745 8361 2.746277 CCAGAACGGGGAAAGCCG 60.746 66.667 0.00 0.00 33.83 5.52
1841 8457 3.716006 CCAGCGTCAACAGCACGG 61.716 66.667 0.00 0.00 37.74 4.94
2007 8630 2.594013 GATGCAGCTAGCCAGGCC 60.594 66.667 12.13 0.00 44.83 5.19
2012 8635 0.179037 TGGACATGATGCAGCTAGCC 60.179 55.000 12.13 0.00 44.83 3.93
2025 8650 0.391130 CACCGTGGAATCGTGGACAT 60.391 55.000 0.00 0.00 0.00 3.06
2167 8961 6.818644 AGTCTCACAAACCATCACACATATAC 59.181 38.462 0.00 0.00 0.00 1.47
2179 8979 2.557056 CCTACTCGAGTCTCACAAACCA 59.443 50.000 23.89 0.00 0.00 3.67
2207 9265 3.162666 ACAGTTGTACTAGCTGCTACCA 58.837 45.455 5.02 0.26 40.90 3.25
2239 9297 7.626446 ACAAAATAACGGTTTCTGCAAATTTC 58.374 30.769 0.00 0.00 0.00 2.17
2278 9341 4.141801 CCACGGTACATTCTTCTTCCCATA 60.142 45.833 0.00 0.00 0.00 2.74
2325 9388 0.609957 TCTCGTCGTTTGGAGCCCTA 60.610 55.000 0.00 0.00 0.00 3.53
2328 9391 0.038526 TTCTCTCGTCGTTTGGAGCC 60.039 55.000 0.00 0.00 0.00 4.70
2329 9392 1.068472 TCTTCTCTCGTCGTTTGGAGC 60.068 52.381 0.00 0.00 0.00 4.70
2337 9400 4.982999 TGGTAGAAAATCTTCTCTCGTCG 58.017 43.478 0.00 0.00 41.19 5.12
2406 9470 5.890424 AACACTATAAAAATGGTCCCACG 57.110 39.130 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.