Multiple sequence alignment - TraesCS1A01G080500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G080500 chr1A 100.000 5669 0 0 1 5669 63332781 63327113 0.000000e+00 10469.0
1 TraesCS1A01G080500 chr1A 88.821 3256 235 56 1628 4828 63479063 63475882 0.000000e+00 3877.0
2 TraesCS1A01G080500 chr1A 84.903 2623 289 59 2225 4784 63744186 63741608 0.000000e+00 2551.0
3 TraesCS1A01G080500 chr1A 91.349 971 36 28 662 1619 63481292 63480357 0.000000e+00 1284.0
4 TraesCS1A01G080500 chr1A 94.276 297 10 2 1019 1315 63747839 63747550 1.120000e-121 448.0
5 TraesCS1A01G080500 chr1A 83.471 363 44 9 2881 3230 426230474 426230833 1.970000e-84 324.0
6 TraesCS1A01G080500 chr1A 85.714 91 11 2 1052 1141 63835724 63835635 1.680000e-15 95.3
7 TraesCS1A01G080500 chr1B 91.599 4904 265 72 700 5533 105111858 105107032 0.000000e+00 6637.0
8 TraesCS1A01G080500 chr1B 85.147 2114 232 48 2741 4818 105259472 105257405 0.000000e+00 2089.0
9 TraesCS1A01G080500 chr1B 84.790 618 50 25 690 1286 105262037 105261443 1.060000e-161 580.0
10 TraesCS1A01G080500 chr1B 88.263 426 45 5 2246 2667 105259934 105259510 6.550000e-139 505.0
11 TraesCS1A01G080500 chr1B 91.883 308 20 4 125 428 105113294 105112988 5.250000e-115 425.0
12 TraesCS1A01G080500 chr1B 96.875 128 3 1 1 128 357406755 357406629 4.450000e-51 213.0
13 TraesCS1A01G080500 chr1B 83.178 107 13 5 1019 1124 105310421 105310319 6.050000e-15 93.5
14 TraesCS1A01G080500 chr1D 91.138 4638 273 56 720 5305 64142653 64138102 0.000000e+00 6161.0
15 TraesCS1A01G080500 chr1D 91.324 3239 223 25 1628 4828 64420418 64417200 0.000000e+00 4372.0
16 TraesCS1A01G080500 chr1D 84.774 2614 286 68 2246 4818 64883749 64881207 0.000000e+00 2519.0
17 TraesCS1A01G080500 chr1D 88.235 1020 74 34 625 1632 64421676 64420691 0.000000e+00 1177.0
18 TraesCS1A01G080500 chr1D 90.537 391 30 4 126 516 64422496 64422113 1.410000e-140 510.0
19 TraesCS1A01G080500 chr1D 91.467 375 25 4 127 496 64495179 64494807 5.070000e-140 508.0
20 TraesCS1A01G080500 chr1D 83.419 585 45 26 762 1317 64885789 64885228 3.950000e-136 496.0
21 TraesCS1A01G080500 chr1D 94.245 278 15 1 126 402 64144247 64143970 1.890000e-114 424.0
22 TraesCS1A01G080500 chr4B 81.586 744 84 27 2545 3245 69298046 69297313 2.960000e-157 566.0
23 TraesCS1A01G080500 chr4B 99.213 127 1 0 1 127 618541260 618541386 4.420000e-56 230.0
24 TraesCS1A01G080500 chr7A 99.200 125 1 0 1 125 239042547 239042671 5.710000e-55 226.0
25 TraesCS1A01G080500 chr7A 85.976 164 17 4 5055 5212 572176743 572176580 2.720000e-38 171.0
26 TraesCS1A01G080500 chr6B 99.200 125 1 0 1 125 713088769 713088893 5.710000e-55 226.0
27 TraesCS1A01G080500 chr6B 96.947 131 4 0 5539 5669 637211379 637211249 2.660000e-53 220.0
28 TraesCS1A01G080500 chr6A 98.413 126 1 1 1 126 462217621 462217497 2.660000e-53 220.0
29 TraesCS1A01G080500 chr6A 96.947 131 4 0 5539 5669 478908431 478908301 2.660000e-53 220.0
30 TraesCS1A01G080500 chr5D 96.923 130 4 0 5540 5669 378269652 378269523 9.560000e-53 219.0
31 TraesCS1A01G080500 chr5D 87.097 155 15 2 5064 5213 211983834 211983680 2.720000e-38 171.0
32 TraesCS1A01G080500 chr5D 88.276 145 12 3 5072 5211 120344962 120344818 9.770000e-38 169.0
33 TraesCS1A01G080500 chr5D 86.667 150 17 2 5064 5210 204323383 204323234 4.540000e-36 163.0
34 TraesCS1A01G080500 chr4A 98.387 124 2 0 2 125 613314815 613314938 9.560000e-53 219.0
35 TraesCS1A01G080500 chr4A 97.619 126 3 0 1 126 695599874 695599749 3.440000e-52 217.0
36 TraesCS1A01G080500 chrUn 97.656 128 0 1 1 125 263236557 263236430 3.440000e-52 217.0
37 TraesCS1A01G080500 chr6D 96.212 132 5 0 5538 5669 295536533 295536402 3.440000e-52 217.0
38 TraesCS1A01G080500 chr5B 97.656 128 0 1 1 125 635117360 635117487 3.440000e-52 217.0
39 TraesCS1A01G080500 chr5B 87.013 154 14 4 5064 5211 133598226 133598073 9.770000e-38 169.0
40 TraesCS1A01G080500 chr5B 86.538 156 15 3 5064 5213 225521688 225521533 3.510000e-37 167.0
41 TraesCS1A01G080500 chr5B 86.667 150 17 2 5064 5210 208523450 208523301 4.540000e-36 163.0
42 TraesCS1A01G080500 chr3D 96.212 132 5 0 5538 5669 368971204 368971335 3.440000e-52 217.0
43 TraesCS1A01G080500 chr3D 96.875 32 1 0 1244 1275 409012487 409012456 3.000000e-03 54.7
44 TraesCS1A01G080500 chr2D 96.212 132 5 0 5538 5669 229732378 229732247 3.440000e-52 217.0
45 TraesCS1A01G080500 chr2D 94.776 134 7 0 5536 5669 204273530 204273397 5.760000e-50 209.0
46 TraesCS1A01G080500 chr3A 94.891 137 7 0 5533 5669 335692229 335692093 1.240000e-51 215.0
47 TraesCS1A01G080500 chr3A 100.000 29 0 0 1244 1272 542229360 542229388 3.000000e-03 54.7
48 TraesCS1A01G080500 chr7D 93.571 140 9 0 5530 5669 11408131 11407992 5.760000e-50 209.0
49 TraesCS1A01G080500 chr5A 88.235 153 13 3 5064 5211 130540664 130540512 1.620000e-40 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G080500 chr1A 63327113 63332781 5668 True 10469.000000 10469 100.000000 1 5669 1 chr1A.!!$R1 5668
1 TraesCS1A01G080500 chr1A 63475882 63481292 5410 True 2580.500000 3877 90.085000 662 4828 2 chr1A.!!$R3 4166
2 TraesCS1A01G080500 chr1A 63741608 63747839 6231 True 1499.500000 2551 89.589500 1019 4784 2 chr1A.!!$R4 3765
3 TraesCS1A01G080500 chr1B 105107032 105113294 6262 True 3531.000000 6637 91.741000 125 5533 2 chr1B.!!$R3 5408
4 TraesCS1A01G080500 chr1B 105257405 105262037 4632 True 1058.000000 2089 86.066667 690 4818 3 chr1B.!!$R4 4128
5 TraesCS1A01G080500 chr1D 64138102 64144247 6145 True 3292.500000 6161 92.691500 126 5305 2 chr1D.!!$R2 5179
6 TraesCS1A01G080500 chr1D 64417200 64422496 5296 True 2019.666667 4372 90.032000 126 4828 3 chr1D.!!$R3 4702
7 TraesCS1A01G080500 chr1D 64881207 64885789 4582 True 1507.500000 2519 84.096500 762 4818 2 chr1D.!!$R4 4056
8 TraesCS1A01G080500 chr4B 69297313 69298046 733 True 566.000000 566 81.586000 2545 3245 1 chr4B.!!$R1 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.179034 GCTGCCTCCTTATGGTCTGG 60.179 60.0 0.00 0.0 34.23 3.86 F
695 1089 0.258774 AAAACCAGACAGCCACACCT 59.741 50.0 0.00 0.0 0.00 4.00 F
1670 5640 0.390603 TTCCGCGTTACACATGGAGG 60.391 55.0 4.92 0.0 0.00 4.30 F
2076 6304 0.107993 TTGGAGGCAGATTCAGCTCG 60.108 55.0 0.86 0.0 0.00 5.03 F
3388 7737 0.749649 TTTCGCCTGGTGCACAAAAT 59.250 45.0 20.43 0.0 41.33 1.82 F
4567 8953 0.170116 GCTCTGCGATAGGATCTCGG 59.830 60.0 5.17 0.0 36.65 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1889 5930 0.323302 TGCTTGCAATCCCGAGTACA 59.677 50.0 0.0 0.0 0.00 2.90 R
1891 5932 0.392461 GGTGCTTGCAATCCCGAGTA 60.392 55.0 0.0 0.0 0.00 2.59 R
2981 7312 2.615493 GCTACCACAGGTTGTATGCAGT 60.615 50.0 0.0 0.0 37.09 4.40 R
4068 8432 0.036590 TGTGCTCACCTTGCTATGCA 59.963 50.0 0.0 0.0 36.47 3.96 R
4618 9004 0.103937 CTGTCGAAGCTGGGGAGATC 59.896 60.0 0.0 0.0 0.00 2.75 R
5590 9997 0.037697 TACCTACCGCTGTTGTGCTG 60.038 55.0 0.0 0.0 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.409651 CGTCTAGGTCGCTGCCTC 59.590 66.667 0.00 0.00 39.94 4.70
21 22 2.809010 GTCTAGGTCGCTGCCTCC 59.191 66.667 0.00 0.00 39.94 4.30
22 23 1.755008 GTCTAGGTCGCTGCCTCCT 60.755 63.158 13.34 13.34 39.94 3.69
23 24 1.000486 TCTAGGTCGCTGCCTCCTT 60.000 57.895 13.89 1.85 39.94 3.36
24 25 0.257905 TCTAGGTCGCTGCCTCCTTA 59.742 55.000 13.89 3.08 39.94 2.69
25 26 1.133450 TCTAGGTCGCTGCCTCCTTAT 60.133 52.381 13.89 0.00 39.94 1.73
26 27 1.000283 CTAGGTCGCTGCCTCCTTATG 60.000 57.143 13.89 4.13 39.94 1.90
27 28 1.227674 GGTCGCTGCCTCCTTATGG 60.228 63.158 0.00 0.00 0.00 2.74
28 29 1.522569 GTCGCTGCCTCCTTATGGT 59.477 57.895 0.00 0.00 34.23 3.55
29 30 0.530870 GTCGCTGCCTCCTTATGGTC 60.531 60.000 0.00 0.00 34.23 4.02
30 31 0.687757 TCGCTGCCTCCTTATGGTCT 60.688 55.000 0.00 0.00 34.23 3.85
31 32 0.531532 CGCTGCCTCCTTATGGTCTG 60.532 60.000 0.00 0.00 34.23 3.51
32 33 0.179034 GCTGCCTCCTTATGGTCTGG 60.179 60.000 0.00 0.00 34.23 3.86
33 34 0.471617 CTGCCTCCTTATGGTCTGGG 59.528 60.000 0.00 0.00 34.23 4.45
34 35 1.149401 GCCTCCTTATGGTCTGGGC 59.851 63.158 0.00 0.00 34.23 5.36
35 36 1.839894 CCTCCTTATGGTCTGGGCC 59.160 63.158 0.00 0.00 34.23 5.80
36 37 0.988145 CCTCCTTATGGTCTGGGCCA 60.988 60.000 5.85 5.85 43.48 5.36
41 42 4.147587 ATGGTCTGGGCCATGGGC 62.148 66.667 29.65 29.65 46.63 5.36
50 51 4.802051 GCCATGGGCTCCTTGCGA 62.802 66.667 15.13 0.00 46.69 5.10
51 52 2.045045 CCATGGGCTCCTTGCGAA 60.045 61.111 2.85 0.00 44.05 4.70
52 53 2.409870 CCATGGGCTCCTTGCGAAC 61.410 63.158 2.85 0.00 44.05 3.95
53 54 2.044946 ATGGGCTCCTTGCGAACC 60.045 61.111 0.00 0.00 44.05 3.62
54 55 3.645268 ATGGGCTCCTTGCGAACCC 62.645 63.158 0.00 0.00 46.03 4.11
55 56 4.035102 GGGCTCCTTGCGAACCCT 62.035 66.667 0.00 0.00 42.91 4.34
56 57 2.747855 GGCTCCTTGCGAACCCTG 60.748 66.667 0.00 0.00 44.05 4.45
57 58 2.747855 GCTCCTTGCGAACCCTGG 60.748 66.667 0.00 0.00 0.00 4.45
58 59 3.068881 CTCCTTGCGAACCCTGGA 58.931 61.111 0.00 0.00 0.00 3.86
59 60 1.078848 CTCCTTGCGAACCCTGGAG 60.079 63.158 0.00 0.00 38.38 3.86
60 61 2.045926 CCTTGCGAACCCTGGAGG 60.046 66.667 0.00 0.00 43.78 4.30
76 77 2.836888 GGGGGCCCCTAGATTTCG 59.163 66.667 39.92 0.00 41.34 3.46
77 78 2.830514 GGGGGCCCCTAGATTTCGG 61.831 68.421 39.92 0.00 41.34 4.30
78 79 2.830514 GGGGCCCCTAGATTTCGGG 61.831 68.421 35.49 0.00 40.29 5.14
82 83 2.836888 CCCTAGATTTCGGGGGCC 59.163 66.667 0.00 0.00 36.78 5.80
83 84 2.830514 CCCTAGATTTCGGGGGCCC 61.831 68.421 15.76 15.76 36.78 5.80
84 85 1.770518 CCTAGATTTCGGGGGCCCT 60.771 63.158 24.38 0.28 0.00 5.19
85 86 1.451936 CTAGATTTCGGGGGCCCTG 59.548 63.158 26.50 26.50 0.00 4.45
86 87 2.056906 CTAGATTTCGGGGGCCCTGG 62.057 65.000 31.01 18.97 0.00 4.45
87 88 4.522975 GATTTCGGGGGCCCTGGG 62.523 72.222 31.01 16.35 0.00 4.45
165 167 8.797438 AGGAATAAAATTCACAAACTCTCTTCC 58.203 33.333 2.36 0.00 0.00 3.46
185 187 2.294791 CCAACCAAACAAGCCGTAATGA 59.705 45.455 0.00 0.00 0.00 2.57
243 245 3.066481 GCCCAAAATGTGCAAACATGTTT 59.934 39.130 18.13 18.13 0.00 2.83
377 379 9.675464 AATCCAAATGACAAAATTAGATGCATT 57.325 25.926 0.00 0.00 0.00 3.56
399 401 7.064847 GCATTGAAGCATGTTGGATCAATAAAA 59.935 33.333 7.40 0.00 38.34 1.52
446 451 1.581934 ATACACCATGAATCGTGGCG 58.418 50.000 20.67 14.26 43.81 5.69
455 460 2.147150 TGAATCGTGGCGACAAAATGA 58.853 42.857 0.00 0.00 46.06 2.57
468 473 6.183360 GGCGACAAAATGATTTATTCTCCTCA 60.183 38.462 0.00 0.00 0.00 3.86
497 502 1.687563 AAGCATATTAACACCGCCCC 58.312 50.000 0.00 0.00 0.00 5.80
503 508 2.413310 ATTAACACCGCCCCAGTAAG 57.587 50.000 0.00 0.00 0.00 2.34
507 512 2.039951 ACCGCCCCAGTAAGCCTA 59.960 61.111 0.00 0.00 0.00 3.93
516 521 4.019231 GCCCCAGTAAGCCTAAATATAGCT 60.019 45.833 0.00 0.00 0.00 3.32
519 524 6.351966 CCCCAGTAAGCCTAAATATAGCTACC 60.352 46.154 0.00 0.00 0.00 3.18
520 525 6.440965 CCCAGTAAGCCTAAATATAGCTACCT 59.559 42.308 0.00 0.00 0.00 3.08
522 527 6.814146 CAGTAAGCCTAAATATAGCTACCTGC 59.186 42.308 0.00 0.00 43.29 4.85
524 529 5.825593 AGCCTAAATATAGCTACCTGCAA 57.174 39.130 0.00 0.00 45.94 4.08
525 530 6.187727 AGCCTAAATATAGCTACCTGCAAA 57.812 37.500 0.00 0.00 45.94 3.68
526 531 6.601332 AGCCTAAATATAGCTACCTGCAAAA 58.399 36.000 0.00 0.00 45.94 2.44
527 532 7.060421 AGCCTAAATATAGCTACCTGCAAAAA 58.940 34.615 0.00 0.00 45.94 1.94
553 558 3.054434 AGCTTGAATATAGCCACACCACA 60.054 43.478 0.00 0.00 39.47 4.17
574 579 5.281376 CACAGAAGCGTTATTGTCATTTTCG 59.719 40.000 0.00 0.00 0.00 3.46
575 580 4.788100 CAGAAGCGTTATTGTCATTTTCGG 59.212 41.667 0.00 0.00 0.00 4.30
585 590 3.701241 TGTCATTTTCGGCAGTTTTGTC 58.299 40.909 0.00 0.00 0.00 3.18
586 591 3.049912 GTCATTTTCGGCAGTTTTGTCC 58.950 45.455 0.00 0.00 0.00 4.02
589 594 3.810310 TTTTCGGCAGTTTTGTCCAAT 57.190 38.095 0.00 0.00 0.00 3.16
590 595 3.810310 TTTCGGCAGTTTTGTCCAATT 57.190 38.095 0.00 0.00 0.00 2.32
592 597 4.497473 TTCGGCAGTTTTGTCCAATTAG 57.503 40.909 0.00 0.00 0.00 1.73
593 598 2.227865 TCGGCAGTTTTGTCCAATTAGC 59.772 45.455 0.00 0.00 0.00 3.09
594 599 2.030363 CGGCAGTTTTGTCCAATTAGCA 60.030 45.455 0.00 0.00 0.00 3.49
595 600 3.551863 CGGCAGTTTTGTCCAATTAGCAA 60.552 43.478 0.00 0.00 0.00 3.91
597 602 4.389687 GGCAGTTTTGTCCAATTAGCAATG 59.610 41.667 0.00 0.00 0.00 2.82
631 1025 3.181483 CCTGTGCAACTGAAGCTTCTTTT 60.181 43.478 26.09 16.01 38.12 2.27
645 1039 6.661304 AGCTTCTTTTTCACAAGGATGAAT 57.339 33.333 0.00 0.00 38.37 2.57
647 1041 8.358582 AGCTTCTTTTTCACAAGGATGAATAT 57.641 30.769 0.00 0.00 38.37 1.28
649 1043 8.246180 GCTTCTTTTTCACAAGGATGAATATGA 58.754 33.333 0.00 0.00 38.37 2.15
656 1050 5.129980 TCACAAGGATGAATATGAGAGTGCT 59.870 40.000 0.00 0.00 0.00 4.40
657 1051 5.466058 CACAAGGATGAATATGAGAGTGCTC 59.534 44.000 0.00 0.00 41.67 4.26
658 1052 5.366186 ACAAGGATGAATATGAGAGTGCTCT 59.634 40.000 0.73 0.73 43.78 4.09
695 1089 0.258774 AAAACCAGACAGCCACACCT 59.741 50.000 0.00 0.00 0.00 4.00
696 1090 0.466189 AAACCAGACAGCCACACCTG 60.466 55.000 0.00 0.00 38.78 4.00
738 1950 2.507110 CTTCCTTCTCCGCTCGCCAA 62.507 60.000 0.00 0.00 0.00 4.52
811 2028 1.279271 AGGTAATCCAAACAGCGAGCT 59.721 47.619 0.00 0.00 35.89 4.09
821 2038 1.221840 CAGCGAGCTAACCCCACAT 59.778 57.895 0.00 0.00 0.00 3.21
921 2165 2.094659 CCTCGTCAGCACGCGAAAT 61.095 57.895 15.93 0.00 46.28 2.17
981 2225 3.275088 GGAACGAGTCGCTCTCCA 58.725 61.111 13.59 0.00 39.84 3.86
1347 2735 4.617959 GGTGCTAGATGCGTGTATAGAAA 58.382 43.478 0.00 0.00 46.63 2.52
1348 2736 4.681942 GGTGCTAGATGCGTGTATAGAAAG 59.318 45.833 0.00 0.00 46.63 2.62
1349 2737 5.282510 GTGCTAGATGCGTGTATAGAAAGT 58.717 41.667 0.00 0.00 46.63 2.66
1350 2738 5.749109 GTGCTAGATGCGTGTATAGAAAGTT 59.251 40.000 0.00 0.00 46.63 2.66
1351 2739 6.255887 GTGCTAGATGCGTGTATAGAAAGTTT 59.744 38.462 0.00 0.00 46.63 2.66
1352 2740 7.434307 GTGCTAGATGCGTGTATAGAAAGTTTA 59.566 37.037 0.00 0.00 46.63 2.01
1353 2741 7.648112 TGCTAGATGCGTGTATAGAAAGTTTAG 59.352 37.037 0.00 0.00 46.63 1.85
1354 2742 7.861372 GCTAGATGCGTGTATAGAAAGTTTAGA 59.139 37.037 0.00 0.00 0.00 2.10
1355 2743 9.731819 CTAGATGCGTGTATAGAAAGTTTAGAA 57.268 33.333 0.00 0.00 0.00 2.10
1356 2744 8.997621 AGATGCGTGTATAGAAAGTTTAGAAA 57.002 30.769 0.00 0.00 0.00 2.52
1389 2779 1.222567 ACCCTTGGTGGAGAAACTGT 58.777 50.000 0.00 0.00 38.35 3.55
1532 2955 3.640029 GGGATAGTTCGTGGTGGAGATTA 59.360 47.826 0.00 0.00 0.00 1.75
1670 5640 0.390603 TTCCGCGTTACACATGGAGG 60.391 55.000 4.92 0.00 0.00 4.30
1809 5850 9.522804 GTAGTATAAGGAGAATGTTCTGTCAAG 57.477 37.037 0.00 0.00 37.73 3.02
1889 5930 3.282157 CACAGCACGCCACAGCTT 61.282 61.111 0.00 0.00 39.50 3.74
1891 5932 3.282157 CAGCACGCCACAGCTTGT 61.282 61.111 0.00 0.00 40.28 3.16
1892 5933 1.960763 CAGCACGCCACAGCTTGTA 60.961 57.895 0.00 0.00 40.28 2.41
1893 5934 1.961277 AGCACGCCACAGCTTGTAC 60.961 57.895 0.00 0.00 40.28 2.90
1894 5935 1.961277 GCACGCCACAGCTTGTACT 60.961 57.895 0.00 0.00 40.28 2.73
1918 6049 3.322828 GGGATTGCAAGCACCATCATAAT 59.677 43.478 17.68 0.00 0.00 1.28
1998 6134 5.945784 TGTAGGGATTGCATTGGATATTAGC 59.054 40.000 0.00 0.00 0.00 3.09
2076 6304 0.107993 TTGGAGGCAGATTCAGCTCG 60.108 55.000 0.86 0.00 0.00 5.03
2084 6312 0.835941 AGATTCAGCTCGAGGCCATT 59.164 50.000 15.58 0.00 43.05 3.16
2093 6321 1.480137 CTCGAGGCCATTCACTTCTCT 59.520 52.381 5.01 0.00 0.00 3.10
2100 6328 6.201806 CGAGGCCATTCACTTCTCTATTTTAG 59.798 42.308 5.01 0.00 0.00 1.85
2197 6441 6.820656 GTCCCTATCTTTATGACTATGCCATG 59.179 42.308 0.00 0.00 0.00 3.66
2204 6448 9.664332 ATCTTTATGACTATGCCATGATCTTAC 57.336 33.333 0.00 0.00 0.00 2.34
2205 6449 8.874156 TCTTTATGACTATGCCATGATCTTACT 58.126 33.333 0.00 0.00 0.00 2.24
2305 6578 9.033481 CCCGTTTAAATAATATCAGTGTCGTAA 57.967 33.333 0.00 0.00 0.00 3.18
2433 6707 7.997223 AGGATTGTAAGCCCCTATAACTTTTAC 59.003 37.037 0.00 0.00 34.20 2.01
2505 6782 6.485648 GGTACATTGGTCAGTTCTAACACTTT 59.514 38.462 0.00 0.00 0.00 2.66
2708 6989 7.350382 TCTGGGGCAAACAATTATCTAACATA 58.650 34.615 0.00 0.00 0.00 2.29
2768 7070 4.678256 TCTGTGTTCTCCTGACTTATCCT 58.322 43.478 0.00 0.00 0.00 3.24
2942 7273 5.568482 TGTTGCGAGGATATTTTCATTTCG 58.432 37.500 0.00 0.00 0.00 3.46
2981 7312 6.009589 TGCAACTTTTCAGAAGGATGGATTA 58.990 36.000 0.00 0.00 0.00 1.75
3048 7386 1.218316 GACTAGCCACCTTGGGACG 59.782 63.158 0.00 0.00 38.19 4.79
3291 7640 6.014584 TCTGGTGCTTTGTTCTGATAGTTCTA 60.015 38.462 0.00 0.00 0.00 2.10
3388 7737 0.749649 TTTCGCCTGGTGCACAAAAT 59.250 45.000 20.43 0.00 41.33 1.82
3389 7738 1.610363 TTCGCCTGGTGCACAAAATA 58.390 45.000 20.43 0.00 41.33 1.40
3427 7776 4.551702 TGAACCAAATCCGATGAAGAGA 57.448 40.909 0.00 0.00 0.00 3.10
3450 7799 3.753815 TCAACATGGCAGAGATCAAACA 58.246 40.909 0.00 0.00 0.00 2.83
3480 7829 9.098355 CGAATGGTTTCAGAAAGACTATATTCA 57.902 33.333 0.00 0.00 0.00 2.57
3569 7918 3.023119 TGGCAAGATGACACAAACTGTT 58.977 40.909 0.00 0.00 24.43 3.16
3592 7941 8.801299 TGTTTAATGCTGAAGACCAATTTATGA 58.199 29.630 0.00 0.00 0.00 2.15
3634 7984 2.223852 TGCGTATTTGTAGCCGCTGATA 60.224 45.455 2.16 0.00 45.90 2.15
3754 8105 2.103941 GGCATCTTCCCTCGATCTTTCT 59.896 50.000 0.00 0.00 0.00 2.52
3818 8169 1.064003 TTCTTGTGCCTCCCTTGCTA 58.936 50.000 0.00 0.00 0.00 3.49
4033 8397 8.463930 AGGATTTGTTCAACAAGATTGAAGTA 57.536 30.769 2.58 0.00 39.53 2.24
4034 8398 8.912988 AGGATTTGTTCAACAAGATTGAAGTAA 58.087 29.630 2.58 1.63 39.53 2.24
4068 8432 0.250338 GGGCTCCACGTTCAAAGAGT 60.250 55.000 0.00 0.00 0.00 3.24
4130 8506 7.905604 TGTAGAGATTTTTCGTCATCACATT 57.094 32.000 0.00 0.00 0.00 2.71
4224 8600 1.613437 CAATGGAGCGAACAACCCTTT 59.387 47.619 0.00 0.00 0.00 3.11
4242 8618 4.074970 CCTTTGCCATTCTTAGTCTGTGT 58.925 43.478 0.00 0.00 0.00 3.72
4258 8635 3.949754 TCTGTGTCGAGGTATAATTCGGT 59.050 43.478 7.14 0.00 37.42 4.69
4293 8670 4.346730 TCTTCAGTGAAATGCATGGGAAT 58.653 39.130 7.06 0.00 0.00 3.01
4295 8672 3.699413 TCAGTGAAATGCATGGGAATGA 58.301 40.909 0.00 0.00 0.00 2.57
4325 8702 4.218312 TGGAGATCAGCTGCTAACATCTA 58.782 43.478 9.47 0.00 35.71 1.98
4398 8782 2.038557 TGTTGAGCTTAGGAAGTCCCAC 59.961 50.000 0.00 0.00 37.41 4.61
4405 8789 0.901580 TAGGAAGTCCCACGGTGACC 60.902 60.000 10.28 0.00 37.41 4.02
4434 8818 2.016905 ACAGACAGGTAGGCAAGAGT 57.983 50.000 0.00 0.00 0.00 3.24
4485 8869 6.036517 GCCATAACTTCACTCTACACATCTTG 59.963 42.308 0.00 0.00 0.00 3.02
4500 8884 3.009473 ACATCTTGAGTGCTGGTGGTTAT 59.991 43.478 0.00 0.00 0.00 1.89
4522 8907 9.443283 GTTATTGAGTGAATGACTTAATGATGC 57.557 33.333 0.53 0.00 40.27 3.91
4533 8918 5.706833 TGACTTAATGATGCTGCTTTCTTGA 59.293 36.000 0.00 0.00 0.00 3.02
4537 8922 8.092687 ACTTAATGATGCTGCTTTCTTGAAATT 58.907 29.630 0.00 0.00 0.00 1.82
4567 8953 0.170116 GCTCTGCGATAGGATCTCGG 59.830 60.000 5.17 0.00 36.65 4.63
4618 9004 1.347817 GGAGCAGCTCTTTGACGACG 61.348 60.000 21.99 0.00 0.00 5.12
4898 9300 5.258051 TGTTGACCTGGTTTTGTTACTTCT 58.742 37.500 0.00 0.00 0.00 2.85
4899 9301 5.712917 TGTTGACCTGGTTTTGTTACTTCTT 59.287 36.000 0.00 0.00 0.00 2.52
4900 9302 6.885376 TGTTGACCTGGTTTTGTTACTTCTTA 59.115 34.615 0.00 0.00 0.00 2.10
4964 9366 6.281190 TCAAGAGTATGAGAAGGATCCCTA 57.719 41.667 8.55 0.00 31.13 3.53
5160 9564 7.812648 ACAAACGCACTAAAATGTGTATATGT 58.187 30.769 0.00 0.00 42.42 2.29
5259 9666 5.708697 ACGTTTTAGAAAAATAGGGAGGTGG 59.291 40.000 0.00 0.00 0.00 4.61
5263 9670 6.713731 TTAGAAAAATAGGGAGGTGGTTCT 57.286 37.500 0.00 0.00 0.00 3.01
5284 9691 1.634973 TGGTTCCATCAGCCAGAATGA 59.365 47.619 0.00 0.00 39.69 2.57
5359 9766 4.863689 CACAACTCAGTCTGCTATGAGAAG 59.136 45.833 9.06 3.81 44.68 2.85
5375 9782 0.957888 GAAGCACTGAACAGGGAGCC 60.958 60.000 8.34 0.00 32.29 4.70
5378 9785 1.079543 CACTGAACAGGGAGCCTCG 60.080 63.158 6.76 0.00 32.29 4.63
5439 9846 1.133809 TCCTGGTTTCCCTCACCCTG 61.134 60.000 0.00 0.00 32.71 4.45
5462 9869 4.760530 TTACCTTCCTCATGTGGATCTG 57.239 45.455 16.93 10.78 35.83 2.90
5466 9873 2.704464 TCCTCATGTGGATCTGCAAG 57.296 50.000 12.50 0.00 0.00 4.01
5469 9876 1.931841 CTCATGTGGATCTGCAAGTCG 59.068 52.381 0.00 0.00 33.76 4.18
5495 9902 1.905894 GTCTCAAAGGAGGAGGCTCTT 59.094 52.381 15.23 6.66 41.69 2.85
5515 9922 2.472029 TCTAGGAAAGGAAGGAGCCTG 58.528 52.381 0.00 0.00 38.58 4.85
5534 9941 5.532557 GCCTGTATCTGGCAAAAATATTCC 58.467 41.667 11.67 0.00 45.75 3.01
5535 9942 5.509670 GCCTGTATCTGGCAAAAATATTCCC 60.510 44.000 11.67 0.00 45.75 3.97
5536 9943 5.011023 CCTGTATCTGGCAAAAATATTCCCC 59.989 44.000 0.00 0.00 0.00 4.81
5537 9944 4.898861 TGTATCTGGCAAAAATATTCCCCC 59.101 41.667 0.00 0.00 0.00 5.40
5551 9958 2.989639 CCCCCTGATGTCGCTTGA 59.010 61.111 0.00 0.00 0.00 3.02
5552 9959 1.299648 CCCCCTGATGTCGCTTGAA 59.700 57.895 0.00 0.00 0.00 2.69
5553 9960 0.745845 CCCCCTGATGTCGCTTGAAG 60.746 60.000 0.00 0.00 0.00 3.02
5554 9961 1.372087 CCCCTGATGTCGCTTGAAGC 61.372 60.000 7.20 7.20 38.02 3.86
5555 9962 0.392193 CCCTGATGTCGCTTGAAGCT 60.392 55.000 15.92 0.00 39.60 3.74
5556 9963 1.134699 CCCTGATGTCGCTTGAAGCTA 60.135 52.381 15.92 0.55 39.60 3.32
5557 9964 1.929836 CCTGATGTCGCTTGAAGCTAC 59.070 52.381 15.92 14.96 39.60 3.58
5558 9965 1.585668 CTGATGTCGCTTGAAGCTACG 59.414 52.381 15.92 0.00 39.48 3.51
5559 9966 1.067846 TGATGTCGCTTGAAGCTACGT 60.068 47.619 15.26 15.26 39.48 3.57
5560 9967 1.584308 GATGTCGCTTGAAGCTACGTC 59.416 52.381 22.62 22.62 42.83 4.34
5561 9968 0.728129 TGTCGCTTGAAGCTACGTCG 60.728 55.000 15.92 0.00 39.48 5.12
5562 9969 1.154093 TCGCTTGAAGCTACGTCGG 60.154 57.895 15.92 0.00 39.60 4.79
5563 9970 1.443872 CGCTTGAAGCTACGTCGGT 60.444 57.895 15.92 0.00 39.60 4.69
5564 9971 0.179181 CGCTTGAAGCTACGTCGGTA 60.179 55.000 15.92 0.00 39.60 4.02
5565 9972 1.533338 CGCTTGAAGCTACGTCGGTAT 60.533 52.381 15.92 0.00 39.60 2.73
5566 9973 2.537401 GCTTGAAGCTACGTCGGTATT 58.463 47.619 10.44 0.00 38.45 1.89
5567 9974 2.928116 GCTTGAAGCTACGTCGGTATTT 59.072 45.455 10.44 0.00 38.45 1.40
5568 9975 3.370061 GCTTGAAGCTACGTCGGTATTTT 59.630 43.478 10.44 0.00 38.45 1.82
5569 9976 4.492085 GCTTGAAGCTACGTCGGTATTTTC 60.492 45.833 10.44 0.00 38.45 2.29
5570 9977 4.445452 TGAAGCTACGTCGGTATTTTCT 57.555 40.909 0.00 0.00 0.00 2.52
5571 9978 4.418392 TGAAGCTACGTCGGTATTTTCTC 58.582 43.478 0.00 0.00 0.00 2.87
5572 9979 4.082625 TGAAGCTACGTCGGTATTTTCTCA 60.083 41.667 0.00 0.00 0.00 3.27
5573 9980 4.445452 AGCTACGTCGGTATTTTCTCAA 57.555 40.909 0.00 0.00 0.00 3.02
5574 9981 4.813027 AGCTACGTCGGTATTTTCTCAAA 58.187 39.130 0.00 0.00 0.00 2.69
5575 9982 4.863131 AGCTACGTCGGTATTTTCTCAAAG 59.137 41.667 0.00 0.00 0.00 2.77
5576 9983 4.860907 GCTACGTCGGTATTTTCTCAAAGA 59.139 41.667 0.00 0.00 0.00 2.52
5577 9984 5.004535 GCTACGTCGGTATTTTCTCAAAGAG 59.995 44.000 0.00 0.00 0.00 2.85
5578 9985 4.243270 ACGTCGGTATTTTCTCAAAGAGG 58.757 43.478 0.00 0.00 0.00 3.69
5579 9986 4.021719 ACGTCGGTATTTTCTCAAAGAGGA 60.022 41.667 0.00 0.00 0.00 3.71
5580 9987 4.927425 CGTCGGTATTTTCTCAAAGAGGAA 59.073 41.667 0.00 0.00 0.00 3.36
5581 9988 5.407387 CGTCGGTATTTTCTCAAAGAGGAAA 59.593 40.000 3.16 3.16 40.82 3.13
5582 9989 6.401153 CGTCGGTATTTTCTCAAAGAGGAAAG 60.401 42.308 6.63 0.00 40.04 2.62
5583 9990 5.938125 TCGGTATTTTCTCAAAGAGGAAAGG 59.062 40.000 6.63 0.00 40.04 3.11
5584 9991 5.938125 CGGTATTTTCTCAAAGAGGAAAGGA 59.062 40.000 6.63 0.00 40.04 3.36
5585 9992 6.599638 CGGTATTTTCTCAAAGAGGAAAGGAT 59.400 38.462 6.63 0.00 40.04 3.24
5586 9993 7.414540 CGGTATTTTCTCAAAGAGGAAAGGATG 60.415 40.741 6.63 0.00 40.04 3.51
5587 9994 7.611855 GGTATTTTCTCAAAGAGGAAAGGATGA 59.388 37.037 6.63 0.00 40.04 2.92
5588 9995 9.183368 GTATTTTCTCAAAGAGGAAAGGATGAT 57.817 33.333 6.63 0.00 40.04 2.45
5589 9996 7.458409 TTTTCTCAAAGAGGAAAGGATGATG 57.542 36.000 0.00 0.00 32.81 3.07
5590 9997 4.521146 TCTCAAAGAGGAAAGGATGATGC 58.479 43.478 0.00 0.00 0.00 3.91
5591 9998 4.019051 TCTCAAAGAGGAAAGGATGATGCA 60.019 41.667 0.00 0.00 0.00 3.96
5592 9999 4.267536 TCAAAGAGGAAAGGATGATGCAG 58.732 43.478 0.00 0.00 0.00 4.41
5593 10000 2.345124 AGAGGAAAGGATGATGCAGC 57.655 50.000 0.00 0.00 0.00 5.25
5594 10001 1.562942 AGAGGAAAGGATGATGCAGCA 59.437 47.619 7.31 7.31 0.00 4.41
5595 10002 1.674962 GAGGAAAGGATGATGCAGCAC 59.325 52.381 6.89 0.81 0.00 4.40
5596 10003 1.005097 AGGAAAGGATGATGCAGCACA 59.995 47.619 6.89 0.00 0.00 4.57
5597 10004 1.820519 GGAAAGGATGATGCAGCACAA 59.179 47.619 6.89 0.00 0.00 3.33
5598 10005 2.416431 GGAAAGGATGATGCAGCACAAC 60.416 50.000 6.89 0.00 0.00 3.32
5599 10006 1.913778 AAGGATGATGCAGCACAACA 58.086 45.000 6.89 0.00 35.29 3.33
5600 10007 1.460504 AGGATGATGCAGCACAACAG 58.539 50.000 6.89 0.00 34.17 3.16
5601 10008 0.179145 GGATGATGCAGCACAACAGC 60.179 55.000 6.89 1.22 36.79 4.40
5602 10009 0.522705 GATGATGCAGCACAACAGCG 60.523 55.000 6.89 0.00 40.15 5.18
5603 10010 1.929806 ATGATGCAGCACAACAGCGG 61.930 55.000 6.89 0.00 40.15 5.52
5604 10011 2.595463 ATGCAGCACAACAGCGGT 60.595 55.556 0.00 0.00 40.15 5.68
5605 10012 1.298157 GATGCAGCACAACAGCGGTA 61.298 55.000 0.00 0.00 40.15 4.02
5606 10013 1.300971 ATGCAGCACAACAGCGGTAG 61.301 55.000 0.00 0.00 40.15 3.18
5607 10014 2.680913 GCAGCACAACAGCGGTAGG 61.681 63.158 0.00 0.00 40.15 3.18
5608 10015 1.301716 CAGCACAACAGCGGTAGGT 60.302 57.895 0.00 0.00 40.15 3.08
5609 10016 0.037697 CAGCACAACAGCGGTAGGTA 60.038 55.000 0.00 0.00 40.15 3.08
5610 10017 0.902531 AGCACAACAGCGGTAGGTAT 59.097 50.000 0.00 0.00 40.15 2.73
5611 10018 1.278127 AGCACAACAGCGGTAGGTATT 59.722 47.619 0.00 0.00 40.15 1.89
5612 10019 2.081462 GCACAACAGCGGTAGGTATTT 58.919 47.619 0.00 0.00 0.00 1.40
5613 10020 2.095372 GCACAACAGCGGTAGGTATTTC 59.905 50.000 0.00 0.00 0.00 2.17
5614 10021 2.676342 CACAACAGCGGTAGGTATTTCC 59.324 50.000 0.00 0.00 0.00 3.13
5615 10022 2.285977 CAACAGCGGTAGGTATTTCCC 58.714 52.381 0.00 0.00 36.75 3.97
5616 10023 1.875488 ACAGCGGTAGGTATTTCCCT 58.125 50.000 0.00 0.00 38.70 4.20
5617 10024 1.761198 ACAGCGGTAGGTATTTCCCTC 59.239 52.381 0.00 0.00 35.97 4.30
5618 10025 1.760613 CAGCGGTAGGTATTTCCCTCA 59.239 52.381 0.00 0.00 35.97 3.86
5619 10026 2.040178 AGCGGTAGGTATTTCCCTCAG 58.960 52.381 0.00 0.00 35.97 3.35
5620 10027 2.037144 GCGGTAGGTATTTCCCTCAGA 58.963 52.381 0.00 0.00 35.97 3.27
5621 10028 2.633481 GCGGTAGGTATTTCCCTCAGAT 59.367 50.000 0.00 0.00 35.97 2.90
5622 10029 3.830755 GCGGTAGGTATTTCCCTCAGATA 59.169 47.826 0.00 0.00 35.97 1.98
5623 10030 4.466726 GCGGTAGGTATTTCCCTCAGATAT 59.533 45.833 0.00 0.00 35.97 1.63
5624 10031 5.624738 GCGGTAGGTATTTCCCTCAGATATG 60.625 48.000 0.00 0.00 35.97 1.78
5625 10032 5.715279 CGGTAGGTATTTCCCTCAGATATGA 59.285 44.000 0.00 0.00 35.97 2.15
5626 10033 6.210784 CGGTAGGTATTTCCCTCAGATATGAA 59.789 42.308 0.00 0.00 35.97 2.57
5627 10034 7.256190 CGGTAGGTATTTCCCTCAGATATGAAA 60.256 40.741 0.00 0.00 35.97 2.69
5628 10035 7.878644 GGTAGGTATTTCCCTCAGATATGAAAC 59.121 40.741 0.00 0.00 35.97 2.78
5629 10036 6.842676 AGGTATTTCCCTCAGATATGAAACC 58.157 40.000 0.00 0.00 36.75 3.27
5630 10037 6.389869 AGGTATTTCCCTCAGATATGAAACCA 59.610 38.462 0.00 0.00 36.75 3.67
5631 10038 7.060421 GGTATTTCCCTCAGATATGAAACCAA 58.940 38.462 0.00 0.00 30.27 3.67
5632 10039 7.229506 GGTATTTCCCTCAGATATGAAACCAAG 59.770 40.741 0.00 0.00 30.27 3.61
5633 10040 4.778213 TCCCTCAGATATGAAACCAAGG 57.222 45.455 0.00 0.00 0.00 3.61
5634 10041 4.111577 TCCCTCAGATATGAAACCAAGGT 58.888 43.478 0.00 0.00 0.00 3.50
5635 10042 4.540099 TCCCTCAGATATGAAACCAAGGTT 59.460 41.667 0.00 0.00 40.45 3.50
5636 10043 5.729229 TCCCTCAGATATGAAACCAAGGTTA 59.271 40.000 4.68 0.00 37.35 2.85
5637 10044 6.389869 TCCCTCAGATATGAAACCAAGGTTAT 59.610 38.462 4.68 0.00 37.35 1.89
5638 10045 6.712547 CCCTCAGATATGAAACCAAGGTTATC 59.287 42.308 4.68 4.81 37.35 1.75
5639 10046 6.425114 CCTCAGATATGAAACCAAGGTTATCG 59.575 42.308 4.68 2.55 37.35 2.92
5640 10047 7.119709 TCAGATATGAAACCAAGGTTATCGA 57.880 36.000 4.68 0.00 37.35 3.59
5641 10048 7.561251 TCAGATATGAAACCAAGGTTATCGAA 58.439 34.615 4.68 0.00 37.35 3.71
5642 10049 7.494625 TCAGATATGAAACCAAGGTTATCGAAC 59.505 37.037 4.68 0.00 37.35 3.95
5656 10063 5.657474 GTTATCGAACCAGTATGAGAACCA 58.343 41.667 0.00 0.00 39.69 3.67
5657 10064 4.819105 ATCGAACCAGTATGAGAACCAA 57.181 40.909 0.00 0.00 39.69 3.67
5658 10065 4.188247 TCGAACCAGTATGAGAACCAAG 57.812 45.455 0.00 0.00 39.69 3.61
5659 10066 2.673368 CGAACCAGTATGAGAACCAAGC 59.327 50.000 0.00 0.00 39.69 4.01
5660 10067 3.674997 GAACCAGTATGAGAACCAAGCA 58.325 45.455 0.00 0.00 39.69 3.91
5661 10068 3.788227 ACCAGTATGAGAACCAAGCAA 57.212 42.857 0.00 0.00 39.69 3.91
5662 10069 3.412386 ACCAGTATGAGAACCAAGCAAC 58.588 45.455 0.00 0.00 39.69 4.17
5663 10070 3.181445 ACCAGTATGAGAACCAAGCAACA 60.181 43.478 0.00 0.00 39.69 3.33
5664 10071 3.189287 CCAGTATGAGAACCAAGCAACAC 59.811 47.826 0.00 0.00 39.69 3.32
5665 10072 3.814842 CAGTATGAGAACCAAGCAACACA 59.185 43.478 0.00 0.00 39.69 3.72
5666 10073 4.275689 CAGTATGAGAACCAAGCAACACAA 59.724 41.667 0.00 0.00 39.69 3.33
5667 10074 3.715628 ATGAGAACCAAGCAACACAAC 57.284 42.857 0.00 0.00 0.00 3.32
5668 10075 1.400142 TGAGAACCAAGCAACACAACG 59.600 47.619 0.00 0.00 0.00 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.409651 GAGGCAGCGACCTAGACG 59.590 66.667 0.01 0.00 41.32 4.18
4 5 1.324005 AAGGAGGCAGCGACCTAGAC 61.324 60.000 9.05 0.00 41.32 2.59
5 6 0.257905 TAAGGAGGCAGCGACCTAGA 59.742 55.000 9.05 0.00 41.32 2.43
6 7 1.000283 CATAAGGAGGCAGCGACCTAG 60.000 57.143 9.05 0.93 41.32 3.02
8 9 1.690219 CCATAAGGAGGCAGCGACCT 61.690 60.000 0.00 0.00 45.04 3.85
10 11 0.530870 GACCATAAGGAGGCAGCGAC 60.531 60.000 0.00 0.00 38.69 5.19
11 12 0.687757 AGACCATAAGGAGGCAGCGA 60.688 55.000 0.00 0.00 38.69 4.93
12 13 0.531532 CAGACCATAAGGAGGCAGCG 60.532 60.000 0.00 0.00 38.69 5.18
13 14 0.179034 CCAGACCATAAGGAGGCAGC 60.179 60.000 0.00 0.00 38.69 5.25
14 15 0.471617 CCCAGACCATAAGGAGGCAG 59.528 60.000 0.00 0.00 38.69 4.85
15 16 1.635817 GCCCAGACCATAAGGAGGCA 61.636 60.000 0.00 0.00 38.94 4.75
16 17 1.149401 GCCCAGACCATAAGGAGGC 59.851 63.158 0.00 0.00 38.69 4.70
17 18 0.988145 TGGCCCAGACCATAAGGAGG 60.988 60.000 0.00 0.00 38.69 4.30
18 19 2.620234 TGGCCCAGACCATAAGGAG 58.380 57.895 0.00 0.00 38.69 3.69
19 20 4.931292 TGGCCCAGACCATAAGGA 57.069 55.556 0.00 0.00 38.69 3.36
33 34 4.802051 TCGCAAGGAGCCCATGGC 62.802 66.667 6.09 1.62 44.39 4.40
34 35 2.045045 TTCGCAAGGAGCCCATGG 60.045 61.111 4.14 4.14 41.38 3.66
35 36 2.409870 GGTTCGCAAGGAGCCCATG 61.410 63.158 0.00 0.00 39.96 3.66
36 37 2.044946 GGTTCGCAAGGAGCCCAT 60.045 61.111 0.00 0.00 39.96 4.00
40 41 2.747855 CCAGGGTTCGCAAGGAGC 60.748 66.667 0.00 0.00 44.55 4.70
41 42 1.078848 CTCCAGGGTTCGCAAGGAG 60.079 63.158 11.49 11.49 39.83 3.69
42 43 2.592993 CCTCCAGGGTTCGCAAGGA 61.593 63.158 0.00 0.00 38.47 3.36
43 44 2.045926 CCTCCAGGGTTCGCAAGG 60.046 66.667 0.00 0.00 38.47 3.61
59 60 2.830514 CCGAAATCTAGGGGCCCCC 61.831 68.421 38.68 19.26 45.90 5.40
60 61 2.830514 CCCGAAATCTAGGGGCCCC 61.831 68.421 35.90 35.90 43.90 5.80
61 62 2.836888 CCCGAAATCTAGGGGCCC 59.163 66.667 17.12 17.12 43.90 5.80
66 67 1.770518 AGGGCCCCCGAAATCTAGG 60.771 63.158 21.43 0.00 41.95 3.02
67 68 1.451936 CAGGGCCCCCGAAATCTAG 59.548 63.158 21.43 0.00 41.95 2.43
68 69 2.076184 CCAGGGCCCCCGAAATCTA 61.076 63.158 21.43 0.00 41.95 1.98
69 70 3.420482 CCAGGGCCCCCGAAATCT 61.420 66.667 21.43 0.00 41.95 2.40
70 71 4.522975 CCCAGGGCCCCCGAAATC 62.523 72.222 21.43 0.00 41.95 2.17
115 116 2.656698 ATATTTTCCCCAGGGCCGGC 62.657 60.000 21.18 21.18 34.68 6.13
116 117 0.539669 GATATTTTCCCCAGGGCCGG 60.540 60.000 0.00 0.00 34.68 6.13
117 118 0.539669 GGATATTTTCCCCAGGGCCG 60.540 60.000 0.00 0.00 38.75 6.13
118 119 0.539669 CGGATATTTTCCCCAGGGCC 60.540 60.000 0.00 0.00 42.06 5.80
119 120 0.476771 TCGGATATTTTCCCCAGGGC 59.523 55.000 0.00 0.00 42.06 5.19
120 121 2.489073 CCTTCGGATATTTTCCCCAGGG 60.489 54.545 0.00 0.00 42.06 4.45
121 122 2.441750 TCCTTCGGATATTTTCCCCAGG 59.558 50.000 0.00 0.00 42.06 4.45
122 123 3.857157 TCCTTCGGATATTTTCCCCAG 57.143 47.619 0.00 0.00 42.06 4.45
123 124 4.806952 ATTCCTTCGGATATTTTCCCCA 57.193 40.909 0.00 0.00 42.06 4.96
150 151 3.924114 TGGTTGGAAGAGAGTTTGTGA 57.076 42.857 0.00 0.00 0.00 3.58
158 160 2.306847 GGCTTGTTTGGTTGGAAGAGA 58.693 47.619 0.00 0.00 0.00 3.10
165 167 3.634568 TCATTACGGCTTGTTTGGTTG 57.365 42.857 0.00 0.00 0.00 3.77
185 187 1.063190 TGACTCGGTCCTACCATCCAT 60.063 52.381 0.00 0.00 38.47 3.41
269 271 1.341531 CTAGAGGGACGCCAGGTTATG 59.658 57.143 0.00 0.00 0.00 1.90
277 279 2.517650 CATCTTTCTAGAGGGACGCC 57.482 55.000 0.00 0.00 32.92 5.68
433 438 2.610219 TTTTGTCGCCACGATTCATG 57.390 45.000 0.00 0.00 38.42 3.07
446 451 7.189512 CGGTGAGGAGAATAAATCATTTTGTC 58.810 38.462 0.00 0.00 0.00 3.18
483 488 2.420408 GCTTACTGGGGCGGTGTTAATA 60.420 50.000 0.00 0.00 0.00 0.98
497 502 6.814146 GCAGGTAGCTATATTTAGGCTTACTG 59.186 42.308 0.00 0.00 41.15 2.74
503 508 6.877611 TTTTGCAGGTAGCTATATTTAGGC 57.122 37.500 0.00 0.00 45.94 3.93
527 532 5.480073 TGGTGTGGCTATATTCAAGCTTTTT 59.520 36.000 0.00 0.00 39.97 1.94
529 534 4.399303 GTGGTGTGGCTATATTCAAGCTTT 59.601 41.667 0.00 0.00 39.97 3.51
531 536 3.054434 TGTGGTGTGGCTATATTCAAGCT 60.054 43.478 0.00 0.00 39.97 3.74
532 537 3.278574 TGTGGTGTGGCTATATTCAAGC 58.721 45.455 0.00 0.00 39.33 4.01
533 538 4.769688 TCTGTGGTGTGGCTATATTCAAG 58.230 43.478 0.00 0.00 0.00 3.02
535 540 4.769688 CTTCTGTGGTGTGGCTATATTCA 58.230 43.478 0.00 0.00 0.00 2.57
547 552 2.805671 TGACAATAACGCTTCTGTGGTG 59.194 45.455 0.00 0.00 0.00 4.17
553 558 4.671766 GCCGAAAATGACAATAACGCTTCT 60.672 41.667 0.00 0.00 0.00 2.85
574 579 3.658757 TGCTAATTGGACAAAACTGCC 57.341 42.857 0.00 0.00 0.00 4.85
575 580 4.389687 CCATTGCTAATTGGACAAAACTGC 59.610 41.667 0.00 0.00 0.00 4.40
585 590 3.796504 GCGAATGGTCCATTGCTAATTGG 60.797 47.826 22.12 0.00 33.90 3.16
586 591 3.181488 TGCGAATGGTCCATTGCTAATTG 60.181 43.478 22.12 1.92 33.90 2.32
589 594 1.742831 GTGCGAATGGTCCATTGCTAA 59.257 47.619 22.12 8.06 33.90 3.09
590 595 1.378531 GTGCGAATGGTCCATTGCTA 58.621 50.000 22.12 12.32 33.90 3.49
592 597 1.139520 GGTGCGAATGGTCCATTGC 59.860 57.895 22.12 22.17 33.90 3.56
593 598 0.452987 CAGGTGCGAATGGTCCATTG 59.547 55.000 22.12 14.22 33.90 2.82
594 599 0.038166 ACAGGTGCGAATGGTCCATT 59.962 50.000 17.33 17.33 36.72 3.16
595 600 0.677731 CACAGGTGCGAATGGTCCAT 60.678 55.000 0.00 0.00 0.00 3.41
597 602 3.578456 CACAGGTGCGAATGGTCC 58.422 61.111 0.00 0.00 0.00 4.46
619 1013 5.593909 TCATCCTTGTGAAAAAGAAGCTTCA 59.406 36.000 27.57 4.16 0.00 3.02
623 1017 8.246180 TCATATTCATCCTTGTGAAAAAGAAGC 58.754 33.333 0.00 0.00 41.09 3.86
631 1025 5.819379 GCACTCTCATATTCATCCTTGTGAA 59.181 40.000 0.00 0.00 41.88 3.18
649 1043 1.067364 CGCATGAGATGAGAGCACTCT 59.933 52.381 12.54 0.00 42.99 3.24
656 1050 0.382158 GACCGTCGCATGAGATGAGA 59.618 55.000 19.00 0.00 36.73 3.27
657 1051 0.101219 TGACCGTCGCATGAGATGAG 59.899 55.000 19.00 11.68 0.00 2.90
658 1052 0.530288 TTGACCGTCGCATGAGATGA 59.470 50.000 19.00 0.00 0.00 2.92
659 1053 1.358877 TTTGACCGTCGCATGAGATG 58.641 50.000 11.37 11.37 0.00 2.90
660 1054 1.732259 GTTTTGACCGTCGCATGAGAT 59.268 47.619 1.41 0.00 0.00 2.75
705 1099 7.094506 GCGGAGAAGGAAGATAAAAAGGTAAAA 60.095 37.037 0.00 0.00 0.00 1.52
710 1104 4.518249 AGCGGAGAAGGAAGATAAAAAGG 58.482 43.478 0.00 0.00 0.00 3.11
738 1950 9.974980 AAATTAACGTTATTCATTGTGAAGGTT 57.025 25.926 9.18 0.00 40.05 3.50
811 2028 2.577700 GTTGTGTGTGATGTGGGGTTA 58.422 47.619 0.00 0.00 0.00 2.85
821 2038 1.376037 TGCGTGTGGTTGTGTGTGA 60.376 52.632 0.00 0.00 0.00 3.58
926 2170 0.175531 GGATTTGGGCCGGTGAATTG 59.824 55.000 1.90 0.00 0.00 2.32
927 2171 0.975556 GGGATTTGGGCCGGTGAATT 60.976 55.000 1.90 0.00 0.00 2.17
928 2172 1.381191 GGGATTTGGGCCGGTGAAT 60.381 57.895 1.90 0.00 0.00 2.57
929 2173 2.036572 GGGATTTGGGCCGGTGAA 59.963 61.111 1.90 0.00 0.00 3.18
930 2174 2.161713 ATTGGGATTTGGGCCGGTGA 62.162 55.000 1.90 0.00 0.00 4.02
1347 2735 8.265764 GGGTACTCAATCTATGGTTTCTAAACT 58.734 37.037 5.62 0.00 38.89 2.66
1348 2736 8.265764 AGGGTACTCAATCTATGGTTTCTAAAC 58.734 37.037 0.00 0.00 38.17 2.01
1349 2737 8.388656 AGGGTACTCAATCTATGGTTTCTAAA 57.611 34.615 0.00 0.00 0.00 1.85
1350 2738 7.989947 AGGGTACTCAATCTATGGTTTCTAA 57.010 36.000 0.00 0.00 0.00 2.10
1351 2739 7.147549 CCAAGGGTACTCAATCTATGGTTTCTA 60.148 40.741 0.00 0.00 0.00 2.10
1352 2740 6.353082 CCAAGGGTACTCAATCTATGGTTTCT 60.353 42.308 0.00 0.00 0.00 2.52
1353 2741 5.823045 CCAAGGGTACTCAATCTATGGTTTC 59.177 44.000 0.00 0.00 0.00 2.78
1354 2742 5.253096 ACCAAGGGTACTCAATCTATGGTTT 59.747 40.000 0.00 0.00 35.20 3.27
1355 2743 4.788617 ACCAAGGGTACTCAATCTATGGTT 59.211 41.667 0.00 0.00 35.20 3.67
1356 2744 4.164221 CACCAAGGGTACTCAATCTATGGT 59.836 45.833 0.00 0.00 39.11 3.55
1646 5616 2.223021 CCATGTGTAACGCGGAATGAAG 60.223 50.000 12.47 0.00 42.39 3.02
1670 5640 4.273969 TGTTTTGTAACCCAGTTCGACATC 59.726 41.667 0.00 0.00 33.15 3.06
1758 5790 0.765510 AGAAGACCAACGGGCTCTTT 59.234 50.000 0.00 0.00 42.44 2.52
1776 5814 8.437274 AACATTCTCCTTATACTACCCCATAG 57.563 38.462 0.00 0.00 36.89 2.23
1843 5884 4.400845 CCGGATGTACTGATACGTTATCG 58.599 47.826 0.00 0.00 38.02 2.92
1846 5887 2.294233 GCCCGGATGTACTGATACGTTA 59.706 50.000 0.73 0.00 33.60 3.18
1878 5919 1.372997 CGAGTACAAGCTGTGGCGT 60.373 57.895 0.00 0.00 44.37 5.68
1880 5921 1.741770 CCCGAGTACAAGCTGTGGC 60.742 63.158 0.00 0.00 39.06 5.01
1881 5922 0.537188 ATCCCGAGTACAAGCTGTGG 59.463 55.000 0.00 0.00 0.00 4.17
1882 5923 2.002586 CAATCCCGAGTACAAGCTGTG 58.997 52.381 0.00 0.00 0.00 3.66
1883 5924 1.676014 GCAATCCCGAGTACAAGCTGT 60.676 52.381 0.00 0.00 0.00 4.40
1886 5927 1.398390 CTTGCAATCCCGAGTACAAGC 59.602 52.381 0.00 0.00 0.00 4.01
1888 5929 1.271108 TGCTTGCAATCCCGAGTACAA 60.271 47.619 0.00 0.00 0.00 2.41
1889 5930 0.323302 TGCTTGCAATCCCGAGTACA 59.677 50.000 0.00 0.00 0.00 2.90
1891 5932 0.392461 GGTGCTTGCAATCCCGAGTA 60.392 55.000 0.00 0.00 0.00 2.59
1892 5933 1.675641 GGTGCTTGCAATCCCGAGT 60.676 57.895 0.00 0.00 0.00 4.18
1893 5934 1.033746 ATGGTGCTTGCAATCCCGAG 61.034 55.000 0.00 0.00 0.00 4.63
1894 5935 1.001020 ATGGTGCTTGCAATCCCGA 60.001 52.632 0.00 0.00 0.00 5.14
1998 6134 3.666298 CGCGCTACGTATAGACAAATG 57.334 47.619 5.56 0.00 36.87 2.32
2023 6169 1.461559 ACAGGTCTAGTGGTCTACGC 58.538 55.000 0.00 0.00 0.00 4.42
2076 6304 6.484977 CCTAAAATAGAGAAGTGAATGGCCTC 59.515 42.308 3.32 0.00 0.00 4.70
2100 6328 4.919754 GCGATCCAAATCAAGCATTAATCC 59.080 41.667 0.00 0.00 31.76 3.01
2176 6411 9.887629 AAGATCATGGCATAGTCATAAAGATAG 57.112 33.333 0.00 0.00 0.00 2.08
2648 6929 6.747739 AGAAAAGAAAAGAAAACTTCAGTCGC 59.252 34.615 0.00 0.00 0.00 5.19
2721 7002 6.439375 AGCAATCAACCATAATGCCATGATAT 59.561 34.615 0.00 0.00 37.73 1.63
2768 7070 3.767131 TCAGGCTGTAACATGTAGCAGTA 59.233 43.478 22.48 6.83 39.15 2.74
2908 7239 4.223320 TCCTCGCAACAGAAAAATCAAC 57.777 40.909 0.00 0.00 0.00 3.18
2953 7284 4.156455 TCCTTCTGAAAAGTTGCAGACT 57.844 40.909 0.90 0.00 40.57 3.24
2981 7312 2.615493 GCTACCACAGGTTGTATGCAGT 60.615 50.000 0.00 0.00 37.09 4.40
3048 7386 9.859692 GCAAATATACCGTAAAACAGATAACTC 57.140 33.333 0.00 0.00 0.00 3.01
3082 7425 4.214119 CAGAACCTGGATATATTTGGCACG 59.786 45.833 0.00 0.00 0.00 5.34
3321 7670 3.889196 TGAAAATCTACACGCAACCAC 57.111 42.857 0.00 0.00 0.00 4.16
3427 7776 4.768448 TGTTTGATCTCTGCCATGTTGATT 59.232 37.500 0.00 0.00 0.00 2.57
3450 7799 4.881850 AGTCTTTCTGAAACCATTCGTGTT 59.118 37.500 0.00 0.00 38.46 3.32
3480 7829 4.687901 TCGTCATCATATGGACCAACAT 57.312 40.909 0.00 0.00 34.90 2.71
3538 7887 4.009675 TGTCATCTTGCCATACCTGTTTC 58.990 43.478 0.00 0.00 0.00 2.78
3569 7918 7.615365 AGGTCATAAATTGGTCTTCAGCATTAA 59.385 33.333 0.00 0.00 0.00 1.40
3663 8014 4.217118 CAGGTGCTTCACTAATTTGCTTCT 59.783 41.667 0.00 0.00 34.40 2.85
3802 8153 3.201930 TGATTATAGCAAGGGAGGCACAA 59.798 43.478 0.00 0.00 0.00 3.33
3845 8196 8.537728 ACTATGCATATGATTTTTCTTCCCAA 57.462 30.769 6.92 0.00 0.00 4.12
4019 8383 4.553938 CGTTGCCGTTACTTCAATCTTGTT 60.554 41.667 0.00 0.00 0.00 2.83
4033 8397 3.732892 CCCGATTGCGTTGCCGTT 61.733 61.111 0.00 0.00 36.15 4.44
4045 8409 2.119484 TTTGAACGTGGAGCCCCGAT 62.119 55.000 0.00 0.00 34.29 4.18
4052 8416 1.581934 TGCACTCTTTGAACGTGGAG 58.418 50.000 0.00 0.00 0.00 3.86
4068 8432 0.036590 TGTGCTCACCTTGCTATGCA 59.963 50.000 0.00 0.00 36.47 3.96
4130 8506 8.836413 CAGTTCCTTCAAAAGTTGTACTCAATA 58.164 33.333 0.00 0.00 35.92 1.90
4224 8600 2.560981 TCGACACAGACTAAGAATGGCA 59.439 45.455 0.00 0.00 0.00 4.92
4242 8618 3.004419 CAGCTCACCGAATTATACCTCGA 59.996 47.826 4.57 0.00 37.23 4.04
4258 8635 2.615447 CACTGAAGAAAAGTGCAGCTCA 59.385 45.455 0.00 0.00 38.72 4.26
4293 8670 3.006217 CAGCTGATCTCCATCGGTTATCA 59.994 47.826 8.42 0.00 37.68 2.15
4295 8672 2.289320 GCAGCTGATCTCCATCGGTTAT 60.289 50.000 20.43 0.00 37.68 1.89
4325 8702 1.064389 GGGATAGAAAAGCAGCACCCT 60.064 52.381 0.00 0.00 33.99 4.34
4398 8782 1.374252 GTACACTGCAGGGTCACCG 60.374 63.158 28.28 2.49 43.47 4.94
4405 8789 3.521995 CCTGTCTGTACACTGCAGG 57.478 57.895 19.93 16.46 40.38 4.85
4485 8869 2.744202 CACTCAATAACCACCAGCACTC 59.256 50.000 0.00 0.00 0.00 3.51
4500 8884 6.403964 GCAGCATCATTAAGTCATTCACTCAA 60.404 38.462 0.00 0.00 32.30 3.02
4522 8907 9.377383 CTGCAAAAATAAATTTCAAGAAAGCAG 57.623 29.630 11.98 11.98 36.67 4.24
4567 8953 0.404040 TTGTCAATCCCCAGGTCACC 59.596 55.000 0.00 0.00 0.00 4.02
4618 9004 0.103937 CTGTCGAAGCTGGGGAGATC 59.896 60.000 0.00 0.00 0.00 2.75
4780 9174 6.548251 TCACCAATCGGTTATCTGTACATCTA 59.452 38.462 0.00 0.00 46.31 1.98
4784 9178 5.408880 TTCACCAATCGGTTATCTGTACA 57.591 39.130 0.00 0.00 46.31 2.90
4839 9237 4.836125 TGTCAATGTTCCTTTCTTCAGC 57.164 40.909 0.00 0.00 0.00 4.26
4876 9278 5.830000 AGAAGTAACAAAACCAGGTCAAC 57.170 39.130 0.00 0.00 0.00 3.18
4898 9300 4.937620 GGAGATGAATGGCGCAGATAATAA 59.062 41.667 10.83 0.00 0.00 1.40
4899 9301 4.020307 TGGAGATGAATGGCGCAGATAATA 60.020 41.667 10.83 0.00 0.00 0.98
4900 9302 3.244665 TGGAGATGAATGGCGCAGATAAT 60.245 43.478 10.83 0.00 0.00 1.28
5015 9417 8.978874 AGTTTATTTTGAATTTTTGCTTCCCT 57.021 26.923 0.00 0.00 0.00 4.20
5056 9458 2.758423 GTGAACAGTGGGAGTGGTTTTT 59.242 45.455 0.00 0.00 0.00 1.94
5057 9459 2.291282 TGTGAACAGTGGGAGTGGTTTT 60.291 45.455 0.00 0.00 0.00 2.43
5058 9460 1.283613 TGTGAACAGTGGGAGTGGTTT 59.716 47.619 0.00 0.00 0.00 3.27
5061 9463 2.051334 TTTGTGAACAGTGGGAGTGG 57.949 50.000 0.00 0.00 0.00 4.00
5117 9519 3.829886 TGTTCACTCATTTCAATCCGC 57.170 42.857 0.00 0.00 0.00 5.54
5179 9583 9.932207 TTCTCCGTTCACAAATATAAGTTCTAA 57.068 29.630 0.00 0.00 0.00 2.10
5188 9592 9.886132 AGTAATACTTTCTCCGTTCACAAATAT 57.114 29.630 0.00 0.00 0.00 1.28
5190 9594 8.095169 AGAGTAATACTTTCTCCGTTCACAAAT 58.905 33.333 0.00 0.00 0.00 2.32
5191 9595 7.439381 AGAGTAATACTTTCTCCGTTCACAAA 58.561 34.615 0.00 0.00 0.00 2.83
5193 9597 6.585695 AGAGTAATACTTTCTCCGTTCACA 57.414 37.500 0.00 0.00 0.00 3.58
5236 9643 5.708697 ACCACCTCCCTATTTTTCTAAAACG 59.291 40.000 0.00 0.00 0.00 3.60
5259 9666 1.815003 CTGGCTGATGGAACCAAGAAC 59.185 52.381 0.00 0.00 31.81 3.01
5263 9670 2.041485 TCATTCTGGCTGATGGAACCAA 59.959 45.455 0.00 0.00 31.81 3.67
5284 9691 4.530710 TGTATGAGCTACTCGTGGTTTT 57.469 40.909 0.00 0.00 32.35 2.43
5359 9766 1.376553 GAGGCTCCCTGTTCAGTGC 60.377 63.158 2.15 1.27 31.76 4.40
5364 9771 1.376037 CAACCGAGGCTCCCTGTTC 60.376 63.158 9.32 0.00 31.76 3.18
5375 9782 5.966742 TCTCACCATCTATATCAACCGAG 57.033 43.478 0.00 0.00 0.00 4.63
5406 9813 1.834263 ACCAGGAGGAGCAGTTGTATC 59.166 52.381 0.00 0.00 38.69 2.24
5439 9846 4.878397 CAGATCCACATGAGGAAGGTAAAC 59.122 45.833 16.23 2.81 41.92 2.01
5462 9869 1.432514 TTGAGACTGCATCGACTTGC 58.567 50.000 4.01 4.01 43.07 4.01
5466 9873 2.266554 CTCCTTTGAGACTGCATCGAC 58.733 52.381 0.00 0.00 41.42 4.20
5469 9876 2.419851 CCTCCTCCTTTGAGACTGCATC 60.420 54.545 0.00 0.00 41.42 3.91
5495 9902 2.225650 ACAGGCTCCTTCCTTTCCTAGA 60.226 50.000 0.00 0.00 33.25 2.43
5515 9922 5.468540 GGGGGAATATTTTTGCCAGATAC 57.531 43.478 0.30 0.00 0.00 2.24
5534 9941 0.745845 CTTCAAGCGACATCAGGGGG 60.746 60.000 0.00 0.00 0.00 5.40
5535 9942 1.372087 GCTTCAAGCGACATCAGGGG 61.372 60.000 0.00 0.00 0.00 4.79
5536 9943 2.093216 GCTTCAAGCGACATCAGGG 58.907 57.895 0.00 0.00 0.00 4.45
5537 9944 3.610610 CGTAGCTTCAAGCGACATCAGG 61.611 54.545 20.90 2.23 45.37 3.86
5538 9945 1.585668 CGTAGCTTCAAGCGACATCAG 59.414 52.381 20.90 2.58 45.37 2.90
5539 9946 1.067846 ACGTAGCTTCAAGCGACATCA 60.068 47.619 20.90 0.00 45.37 3.07
5540 9947 1.584308 GACGTAGCTTCAAGCGACATC 59.416 52.381 20.90 12.71 45.37 3.06
5541 9948 1.630148 GACGTAGCTTCAAGCGACAT 58.370 50.000 20.90 7.21 45.37 3.06
5542 9949 0.728129 CGACGTAGCTTCAAGCGACA 60.728 55.000 20.90 0.53 45.37 4.35
5546 9953 2.205307 ATACCGACGTAGCTTCAAGC 57.795 50.000 0.00 0.00 42.84 4.01
5547 9954 4.863131 AGAAAATACCGACGTAGCTTCAAG 59.137 41.667 0.00 0.00 0.00 3.02
5548 9955 4.813027 AGAAAATACCGACGTAGCTTCAA 58.187 39.130 0.00 0.00 0.00 2.69
5549 9956 4.082625 TGAGAAAATACCGACGTAGCTTCA 60.083 41.667 0.00 0.00 0.00 3.02
5550 9957 4.418392 TGAGAAAATACCGACGTAGCTTC 58.582 43.478 0.00 0.00 0.00 3.86
5551 9958 4.445452 TGAGAAAATACCGACGTAGCTT 57.555 40.909 0.00 0.00 0.00 3.74
5552 9959 4.445452 TTGAGAAAATACCGACGTAGCT 57.555 40.909 0.00 0.00 0.00 3.32
5553 9960 4.860907 TCTTTGAGAAAATACCGACGTAGC 59.139 41.667 0.00 0.00 0.00 3.58
5554 9961 5.515626 CCTCTTTGAGAAAATACCGACGTAG 59.484 44.000 0.00 0.00 0.00 3.51
5555 9962 5.183713 TCCTCTTTGAGAAAATACCGACGTA 59.816 40.000 0.00 0.00 0.00 3.57
5556 9963 4.021719 TCCTCTTTGAGAAAATACCGACGT 60.022 41.667 0.00 0.00 0.00 4.34
5557 9964 4.491676 TCCTCTTTGAGAAAATACCGACG 58.508 43.478 0.00 0.00 0.00 5.12
5558 9965 6.128254 CCTTTCCTCTTTGAGAAAATACCGAC 60.128 42.308 0.00 0.00 0.00 4.79
5559 9966 5.938125 CCTTTCCTCTTTGAGAAAATACCGA 59.062 40.000 0.00 0.00 0.00 4.69
5560 9967 5.938125 TCCTTTCCTCTTTGAGAAAATACCG 59.062 40.000 0.00 0.00 0.00 4.02
5561 9968 7.611855 TCATCCTTTCCTCTTTGAGAAAATACC 59.388 37.037 0.00 0.00 0.00 2.73
5562 9969 8.567285 TCATCCTTTCCTCTTTGAGAAAATAC 57.433 34.615 0.00 0.00 0.00 1.89
5563 9970 9.182214 CATCATCCTTTCCTCTTTGAGAAAATA 57.818 33.333 0.00 0.00 0.00 1.40
5564 9971 7.363617 GCATCATCCTTTCCTCTTTGAGAAAAT 60.364 37.037 0.00 0.00 0.00 1.82
5565 9972 6.071728 GCATCATCCTTTCCTCTTTGAGAAAA 60.072 38.462 0.00 0.00 0.00 2.29
5566 9973 5.416952 GCATCATCCTTTCCTCTTTGAGAAA 59.583 40.000 0.00 0.00 0.00 2.52
5567 9974 4.946157 GCATCATCCTTTCCTCTTTGAGAA 59.054 41.667 0.00 0.00 0.00 2.87
5568 9975 4.019051 TGCATCATCCTTTCCTCTTTGAGA 60.019 41.667 0.00 0.00 0.00 3.27
5569 9976 4.267536 TGCATCATCCTTTCCTCTTTGAG 58.732 43.478 0.00 0.00 0.00 3.02
5570 9977 4.267536 CTGCATCATCCTTTCCTCTTTGA 58.732 43.478 0.00 0.00 0.00 2.69
5571 9978 3.181489 GCTGCATCATCCTTTCCTCTTTG 60.181 47.826 0.00 0.00 0.00 2.77
5572 9979 3.022406 GCTGCATCATCCTTTCCTCTTT 58.978 45.455 0.00 0.00 0.00 2.52
5573 9980 2.025605 TGCTGCATCATCCTTTCCTCTT 60.026 45.455 0.00 0.00 0.00 2.85
5574 9981 1.562942 TGCTGCATCATCCTTTCCTCT 59.437 47.619 0.00 0.00 0.00 3.69
5575 9982 1.674962 GTGCTGCATCATCCTTTCCTC 59.325 52.381 5.27 0.00 0.00 3.71
5576 9983 1.005097 TGTGCTGCATCATCCTTTCCT 59.995 47.619 5.27 0.00 0.00 3.36
5577 9984 1.466856 TGTGCTGCATCATCCTTTCC 58.533 50.000 5.27 0.00 0.00 3.13
5578 9985 2.229543 TGTTGTGCTGCATCATCCTTTC 59.770 45.455 5.27 0.00 0.00 2.62
5579 9986 2.230508 CTGTTGTGCTGCATCATCCTTT 59.769 45.455 5.27 0.00 0.00 3.11
5580 9987 1.816835 CTGTTGTGCTGCATCATCCTT 59.183 47.619 5.27 0.00 0.00 3.36
5581 9988 1.460504 CTGTTGTGCTGCATCATCCT 58.539 50.000 5.27 0.00 0.00 3.24
5582 9989 0.179145 GCTGTTGTGCTGCATCATCC 60.179 55.000 5.27 0.00 41.05 3.51
5583 9990 0.522705 CGCTGTTGTGCTGCATCATC 60.523 55.000 5.27 6.05 41.39 2.92
5584 9991 1.504900 CGCTGTTGTGCTGCATCAT 59.495 52.632 5.27 0.00 41.39 2.45
5585 9992 2.619165 CCGCTGTTGTGCTGCATCA 61.619 57.895 5.27 3.06 41.39 3.07
5586 9993 1.298157 TACCGCTGTTGTGCTGCATC 61.298 55.000 5.27 0.09 41.39 3.91
5587 9994 1.300971 CTACCGCTGTTGTGCTGCAT 61.301 55.000 5.27 0.00 41.39 3.96
5588 9995 1.960763 CTACCGCTGTTGTGCTGCA 60.961 57.895 0.00 0.00 41.39 4.41
5589 9996 2.680913 CCTACCGCTGTTGTGCTGC 61.681 63.158 0.00 0.00 38.48 5.25
5590 9997 0.037697 TACCTACCGCTGTTGTGCTG 60.038 55.000 0.00 0.00 0.00 4.41
5591 9998 0.902531 ATACCTACCGCTGTTGTGCT 59.097 50.000 0.00 0.00 0.00 4.40
5592 9999 1.734163 AATACCTACCGCTGTTGTGC 58.266 50.000 0.00 0.00 0.00 4.57
5593 10000 2.676342 GGAAATACCTACCGCTGTTGTG 59.324 50.000 0.00 0.00 35.41 3.33
5594 10001 2.355412 GGGAAATACCTACCGCTGTTGT 60.355 50.000 0.00 0.00 38.98 3.32
5595 10002 2.093128 AGGGAAATACCTACCGCTGTTG 60.093 50.000 0.00 0.00 39.65 3.33
5596 10003 2.169978 GAGGGAAATACCTACCGCTGTT 59.830 50.000 0.00 0.00 42.10 3.16
5597 10004 1.761198 GAGGGAAATACCTACCGCTGT 59.239 52.381 0.00 0.00 42.10 4.40
5598 10005 1.760613 TGAGGGAAATACCTACCGCTG 59.239 52.381 0.00 0.00 42.10 5.18
5599 10006 2.040178 CTGAGGGAAATACCTACCGCT 58.960 52.381 0.00 0.00 42.10 5.52
5600 10007 2.037144 TCTGAGGGAAATACCTACCGC 58.963 52.381 0.00 0.00 42.10 5.68
5601 10008 5.715279 TCATATCTGAGGGAAATACCTACCG 59.285 44.000 0.00 0.00 42.10 4.02
5602 10009 7.554959 TTCATATCTGAGGGAAATACCTACC 57.445 40.000 0.00 0.00 42.10 3.18
5603 10010 7.878644 GGTTTCATATCTGAGGGAAATACCTAC 59.121 40.741 0.00 0.00 42.10 3.18
5604 10011 7.570982 TGGTTTCATATCTGAGGGAAATACCTA 59.429 37.037 0.00 0.00 42.10 3.08
5605 10012 6.389869 TGGTTTCATATCTGAGGGAAATACCT 59.610 38.462 0.00 0.00 45.57 3.08
5606 10013 6.601332 TGGTTTCATATCTGAGGGAAATACC 58.399 40.000 0.00 0.00 32.52 2.73
5607 10014 7.229506 CCTTGGTTTCATATCTGAGGGAAATAC 59.770 40.741 0.00 0.00 32.52 1.89
5608 10015 7.091993 ACCTTGGTTTCATATCTGAGGGAAATA 60.092 37.037 0.00 0.00 32.52 1.40
5609 10016 6.131961 CCTTGGTTTCATATCTGAGGGAAAT 58.868 40.000 0.00 0.00 32.52 2.17
5610 10017 5.015178 ACCTTGGTTTCATATCTGAGGGAAA 59.985 40.000 0.00 0.00 31.68 3.13
5611 10018 4.540099 ACCTTGGTTTCATATCTGAGGGAA 59.460 41.667 0.00 0.00 31.68 3.97
5612 10019 4.111577 ACCTTGGTTTCATATCTGAGGGA 58.888 43.478 0.00 0.00 31.68 4.20
5613 10020 4.510167 ACCTTGGTTTCATATCTGAGGG 57.490 45.455 0.00 0.00 31.68 4.30
5614 10021 6.425114 CGATAACCTTGGTTTCATATCTGAGG 59.575 42.308 10.52 0.00 31.68 3.86
5615 10022 7.210174 TCGATAACCTTGGTTTCATATCTGAG 58.790 38.462 10.52 0.00 31.68 3.35
5616 10023 7.119709 TCGATAACCTTGGTTTCATATCTGA 57.880 36.000 10.52 6.83 0.00 3.27
5617 10024 7.630924 GTTCGATAACCTTGGTTTCATATCTG 58.369 38.462 10.52 4.99 0.00 2.90
5618 10025 7.787725 GTTCGATAACCTTGGTTTCATATCT 57.212 36.000 10.52 0.00 0.00 1.98
5633 10040 5.657474 TGGTTCTCATACTGGTTCGATAAC 58.343 41.667 0.00 0.00 34.66 1.89
5634 10041 5.925506 TGGTTCTCATACTGGTTCGATAA 57.074 39.130 0.00 0.00 0.00 1.75
5635 10042 5.681437 GCTTGGTTCTCATACTGGTTCGATA 60.681 44.000 0.00 0.00 0.00 2.92
5636 10043 4.759782 CTTGGTTCTCATACTGGTTCGAT 58.240 43.478 0.00 0.00 0.00 3.59
5637 10044 3.616560 GCTTGGTTCTCATACTGGTTCGA 60.617 47.826 0.00 0.00 0.00 3.71
5638 10045 2.673368 GCTTGGTTCTCATACTGGTTCG 59.327 50.000 0.00 0.00 0.00 3.95
5639 10046 3.674997 TGCTTGGTTCTCATACTGGTTC 58.325 45.455 0.00 0.00 0.00 3.62
5640 10047 3.788227 TGCTTGGTTCTCATACTGGTT 57.212 42.857 0.00 0.00 0.00 3.67
5641 10048 3.181445 TGTTGCTTGGTTCTCATACTGGT 60.181 43.478 0.00 0.00 0.00 4.00
5642 10049 3.189287 GTGTTGCTTGGTTCTCATACTGG 59.811 47.826 0.00 0.00 0.00 4.00
5643 10050 3.814842 TGTGTTGCTTGGTTCTCATACTG 59.185 43.478 0.00 0.00 0.00 2.74
5644 10051 4.085357 TGTGTTGCTTGGTTCTCATACT 57.915 40.909 0.00 0.00 0.00 2.12
5645 10052 4.537015 GTTGTGTTGCTTGGTTCTCATAC 58.463 43.478 0.00 0.00 0.00 2.39
5646 10053 3.249799 CGTTGTGTTGCTTGGTTCTCATA 59.750 43.478 0.00 0.00 0.00 2.15
5647 10054 2.033299 CGTTGTGTTGCTTGGTTCTCAT 59.967 45.455 0.00 0.00 0.00 2.90
5648 10055 1.400142 CGTTGTGTTGCTTGGTTCTCA 59.600 47.619 0.00 0.00 0.00 3.27
5649 10056 2.105323 CGTTGTGTTGCTTGGTTCTC 57.895 50.000 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.