Multiple sequence alignment - TraesCS1A01G080400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G080400 chr1A 100.000 3140 0 0 1 3140 63088196 63085057 0.000000e+00 5799
1 TraesCS1A01G080400 chr1A 83.884 484 62 15 15 487 568517079 568517557 6.180000e-122 448
2 TraesCS1A01G080400 chr1B 92.650 1864 90 14 492 2332 104782793 104780954 0.000000e+00 2639
3 TraesCS1A01G080400 chr1B 93.289 596 32 4 2545 3137 104780784 104780194 0.000000e+00 872
4 TraesCS1A01G080400 chr1B 83.433 501 65 17 1 487 543545787 543545291 1.720000e-122 449
5 TraesCS1A01G080400 chr1D 92.214 1644 80 8 635 2266 64118965 64117358 0.000000e+00 2283
6 TraesCS1A01G080400 chr1D 91.676 913 46 10 2230 3137 64117349 64116462 0.000000e+00 1238
7 TraesCS1A01G080400 chr1D 91.026 156 10 3 496 649 64119071 64118918 1.140000e-49 207
8 TraesCS1A01G080400 chr3B 85.011 467 56 13 33 487 803359705 803359241 2.210000e-126 462
9 TraesCS1A01G080400 chr3D 84.681 470 62 10 25 487 137217766 137218232 7.930000e-126 460
10 TraesCS1A01G080400 chr7A 84.829 468 56 13 32 486 2975099 2975564 1.030000e-124 457
11 TraesCS1A01G080400 chr7A 84.025 482 61 15 18 486 716249802 716250280 1.720000e-122 449
12 TraesCS1A01G080400 chr7B 84.681 470 54 17 32 487 171646043 171645578 1.330000e-123 453
13 TraesCS1A01G080400 chr7B 73.856 765 153 27 1410 2134 594122272 594123029 8.640000e-66 261
14 TraesCS1A01G080400 chr7B 73.518 759 164 21 1409 2134 594119195 594119949 1.450000e-63 254
15 TraesCS1A01G080400 chr7B 80.068 296 52 7 1841 2133 661719638 661719347 2.450000e-51 213
16 TraesCS1A01G080400 chr7B 78.351 291 55 4 1847 2133 705892452 705892738 6.920000e-42 182
17 TraesCS1A01G080400 chr7D 83.992 481 66 10 15 487 92297497 92297020 4.780000e-123 451
18 TraesCS1A01G080400 chr7D 73.850 761 154 27 1411 2134 549795007 549795759 8.640000e-66 261
19 TraesCS1A01G080400 chr5D 84.177 474 63 12 25 487 443784124 443783652 1.720000e-122 449
20 TraesCS1A01G080400 chr5D 82.558 258 42 3 1526 1780 497820858 497821115 1.130000e-54 224
21 TraesCS1A01G080400 chr6D 74.424 911 190 29 1229 2125 472931343 472932224 4.980000e-93 351
22 TraesCS1A01G080400 chr6D 71.993 1164 266 47 990 2125 24933978 24935109 3.960000e-74 289
23 TraesCS1A01G080400 chr6B 76.393 610 115 16 1529 2125 718253189 718253782 5.090000e-78 302
24 TraesCS1A01G080400 chr6B 75.330 454 83 16 1532 1963 718294770 718295216 1.150000e-44 191
25 TraesCS1A01G080400 chr6A 76.080 602 117 14 1536 2125 616890501 616889915 3.960000e-74 289


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G080400 chr1A 63085057 63088196 3139 True 5799.000000 5799 100.000000 1 3140 1 chr1A.!!$R1 3139
1 TraesCS1A01G080400 chr1B 104780194 104782793 2599 True 1755.500000 2639 92.969500 492 3137 2 chr1B.!!$R2 2645
2 TraesCS1A01G080400 chr1D 64116462 64119071 2609 True 1242.666667 2283 91.638667 496 3137 3 chr1D.!!$R1 2641
3 TraesCS1A01G080400 chr7B 594119195 594123029 3834 False 257.500000 261 73.687000 1409 2134 2 chr7B.!!$F2 725
4 TraesCS1A01G080400 chr7D 549795007 549795759 752 False 261.000000 261 73.850000 1411 2134 1 chr7D.!!$F1 723
5 TraesCS1A01G080400 chr6D 472931343 472932224 881 False 351.000000 351 74.424000 1229 2125 1 chr6D.!!$F2 896
6 TraesCS1A01G080400 chr6D 24933978 24935109 1131 False 289.000000 289 71.993000 990 2125 1 chr6D.!!$F1 1135
7 TraesCS1A01G080400 chr6B 718253189 718253782 593 False 302.000000 302 76.393000 1529 2125 1 chr6B.!!$F1 596
8 TraesCS1A01G080400 chr6A 616889915 616890501 586 True 289.000000 289 76.080000 1536 2125 1 chr6A.!!$R1 589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.034896 TTTCCTTCCGTGAGAGGCAC 59.965 55.0 0.0 0.0 44.21 5.01 F
153 154 0.098200 CGCGAGAGATACGGTTGTGA 59.902 55.0 0.0 0.0 0.00 3.58 F
477 478 0.109532 TGGGGTGATCTTTGCAACGA 59.890 50.0 8.2 8.2 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1096 1121 0.109723 GTGTAGCCCTCCACCACAAA 59.890 55.0 0.00 0.00 0.00 2.83 R
1287 1318 0.179051 AACTAAACCCGAACCGCACA 60.179 50.0 0.00 0.00 0.00 4.57 R
2170 5321 0.239347 ACAAACTACGACCGGTCTCG 59.761 55.0 30.92 22.33 39.68 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.656314 AAAACATGTTTTCCGGTTTTTCTC 57.344 33.333 27.01 0.00 39.63 2.87
25 26 5.592104 AACATGTTTTCCGGTTTTTCTCT 57.408 34.783 4.92 0.00 0.00 3.10
26 27 5.592104 ACATGTTTTCCGGTTTTTCTCTT 57.408 34.783 0.00 0.00 0.00 2.85
27 28 5.972935 ACATGTTTTCCGGTTTTTCTCTTT 58.027 33.333 0.00 0.00 0.00 2.52
28 29 6.040247 ACATGTTTTCCGGTTTTTCTCTTTC 58.960 36.000 0.00 0.00 0.00 2.62
29 30 5.646577 TGTTTTCCGGTTTTTCTCTTTCA 57.353 34.783 0.00 0.00 0.00 2.69
30 31 6.215495 TGTTTTCCGGTTTTTCTCTTTCAT 57.785 33.333 0.00 0.00 0.00 2.57
31 32 6.039616 TGTTTTCCGGTTTTTCTCTTTCATG 58.960 36.000 0.00 0.00 0.00 3.07
32 33 6.127591 TGTTTTCCGGTTTTTCTCTTTCATGA 60.128 34.615 0.00 0.00 0.00 3.07
33 34 5.689383 TTCCGGTTTTTCTCTTTCATGAG 57.311 39.130 0.00 0.00 35.52 2.90
34 35 4.968259 TCCGGTTTTTCTCTTTCATGAGA 58.032 39.130 0.00 0.00 40.87 3.27
35 36 4.997395 TCCGGTTTTTCTCTTTCATGAGAG 59.003 41.667 6.92 6.92 43.05 3.20
36 37 4.154918 CCGGTTTTTCTCTTTCATGAGAGG 59.845 45.833 12.96 4.72 43.05 3.69
37 38 4.378874 CGGTTTTTCTCTTTCATGAGAGGC 60.379 45.833 12.96 0.23 43.05 4.70
38 39 4.520492 GGTTTTTCTCTTTCATGAGAGGCA 59.480 41.667 12.96 0.00 43.05 4.75
39 40 5.184671 GGTTTTTCTCTTTCATGAGAGGCAT 59.815 40.000 12.96 0.00 43.05 4.40
47 48 2.877975 ATGAGAGGCATGGTTGTGC 58.122 52.632 0.00 0.00 44.31 4.57
48 49 0.330604 ATGAGAGGCATGGTTGTGCT 59.669 50.000 0.00 0.00 44.45 4.40
49 50 0.111061 TGAGAGGCATGGTTGTGCTT 59.889 50.000 0.00 0.00 44.45 3.91
50 51 1.251251 GAGAGGCATGGTTGTGCTTT 58.749 50.000 0.00 0.00 44.45 3.51
51 52 1.615392 GAGAGGCATGGTTGTGCTTTT 59.385 47.619 0.00 0.00 44.45 2.27
52 53 1.342174 AGAGGCATGGTTGTGCTTTTG 59.658 47.619 0.00 0.00 44.45 2.44
53 54 0.249996 AGGCATGGTTGTGCTTTTGC 60.250 50.000 0.00 0.00 44.45 3.68
79 80 4.323477 CGACCGTGCCCCCTGAAA 62.323 66.667 0.00 0.00 0.00 2.69
80 81 2.114411 GACCGTGCCCCCTGAAAA 59.886 61.111 0.00 0.00 0.00 2.29
81 82 1.529713 GACCGTGCCCCCTGAAAAA 60.530 57.895 0.00 0.00 0.00 1.94
82 83 1.524008 GACCGTGCCCCCTGAAAAAG 61.524 60.000 0.00 0.00 0.00 2.27
83 84 1.228429 CCGTGCCCCCTGAAAAAGA 60.228 57.895 0.00 0.00 0.00 2.52
84 85 0.825840 CCGTGCCCCCTGAAAAAGAA 60.826 55.000 0.00 0.00 0.00 2.52
85 86 1.036707 CGTGCCCCCTGAAAAAGAAA 58.963 50.000 0.00 0.00 0.00 2.52
86 87 1.410882 CGTGCCCCCTGAAAAAGAAAA 59.589 47.619 0.00 0.00 0.00 2.29
87 88 2.159028 CGTGCCCCCTGAAAAAGAAAAA 60.159 45.455 0.00 0.00 0.00 1.94
120 121 1.892209 TTTTTCCTTCCGTGAGAGGC 58.108 50.000 0.00 0.00 0.00 4.70
121 122 0.762418 TTTTCCTTCCGTGAGAGGCA 59.238 50.000 0.00 0.00 0.00 4.75
122 123 0.034896 TTTCCTTCCGTGAGAGGCAC 59.965 55.000 0.00 0.00 44.21 5.01
130 131 1.282875 GTGAGAGGCACGGTTTTGC 59.717 57.895 0.00 0.00 42.18 3.68
131 132 1.148273 TGAGAGGCACGGTTTTGCT 59.852 52.632 0.00 0.00 42.56 3.91
132 133 0.465460 TGAGAGGCACGGTTTTGCTT 60.465 50.000 0.00 0.00 42.56 3.91
133 134 0.238553 GAGAGGCACGGTTTTGCTTC 59.761 55.000 0.28 0.28 46.31 3.86
134 135 1.172812 AGAGGCACGGTTTTGCTTCC 61.173 55.000 4.54 0.00 46.96 3.46
139 140 2.173382 CGGTTTTGCTTCCGCGAG 59.827 61.111 8.23 0.00 40.28 5.03
140 141 2.314647 CGGTTTTGCTTCCGCGAGA 61.315 57.895 8.23 0.00 40.28 4.04
141 142 1.497722 GGTTTTGCTTCCGCGAGAG 59.502 57.895 8.23 5.93 39.65 3.20
142 143 0.949105 GGTTTTGCTTCCGCGAGAGA 60.949 55.000 8.23 0.00 39.65 3.10
143 144 1.079503 GTTTTGCTTCCGCGAGAGAT 58.920 50.000 8.23 0.00 39.65 2.75
144 145 2.268298 GTTTTGCTTCCGCGAGAGATA 58.732 47.619 8.23 0.00 39.65 1.98
145 146 1.922570 TTTGCTTCCGCGAGAGATAC 58.077 50.000 8.23 0.00 39.65 2.24
146 147 0.248498 TTGCTTCCGCGAGAGATACG 60.248 55.000 8.23 0.00 39.65 3.06
148 149 2.023318 CTTCCGCGAGAGATACGGT 58.977 57.895 8.23 0.00 46.92 4.83
149 150 0.381089 CTTCCGCGAGAGATACGGTT 59.619 55.000 8.23 0.00 46.92 4.44
150 151 0.099968 TTCCGCGAGAGATACGGTTG 59.900 55.000 8.23 0.00 46.92 3.77
151 152 1.028330 TCCGCGAGAGATACGGTTGT 61.028 55.000 8.23 0.00 46.92 3.32
152 153 0.866061 CCGCGAGAGATACGGTTGTG 60.866 60.000 8.23 0.00 42.01 3.33
153 154 0.098200 CGCGAGAGATACGGTTGTGA 59.902 55.000 0.00 0.00 0.00 3.58
154 155 1.268589 CGCGAGAGATACGGTTGTGAT 60.269 52.381 0.00 0.00 0.00 3.06
155 156 2.794981 CGCGAGAGATACGGTTGTGATT 60.795 50.000 0.00 0.00 0.00 2.57
156 157 3.187700 GCGAGAGATACGGTTGTGATTT 58.812 45.455 0.00 0.00 0.00 2.17
157 158 3.243177 GCGAGAGATACGGTTGTGATTTC 59.757 47.826 0.00 0.00 0.00 2.17
158 159 4.421058 CGAGAGATACGGTTGTGATTTCA 58.579 43.478 0.00 0.00 0.00 2.69
159 160 4.265556 CGAGAGATACGGTTGTGATTTCAC 59.734 45.833 3.72 3.72 46.59 3.18
169 170 0.716108 GTGATTTCACGAGAGGCACG 59.284 55.000 0.00 0.00 37.10 5.34
170 171 0.389817 TGATTTCACGAGAGGCACGG 60.390 55.000 0.00 0.00 34.93 4.94
171 172 1.079127 ATTTCACGAGAGGCACGGG 60.079 57.895 0.00 0.00 35.35 5.28
172 173 3.876589 TTTCACGAGAGGCACGGGC 62.877 63.158 0.00 0.00 40.13 6.13
181 182 4.681978 GGCACGGGCGTGTCTCTT 62.682 66.667 2.17 0.00 46.17 2.85
182 183 2.665185 GCACGGGCGTGTCTCTTT 60.665 61.111 0.00 0.00 46.90 2.52
183 184 2.668280 GCACGGGCGTGTCTCTTTC 61.668 63.158 0.00 0.00 46.90 2.62
184 185 2.049433 ACGGGCGTGTCTCTTTCG 60.049 61.111 0.00 0.00 0.00 3.46
185 186 2.257371 CGGGCGTGTCTCTTTCGA 59.743 61.111 0.00 0.00 0.00 3.71
186 187 1.372499 CGGGCGTGTCTCTTTCGAA 60.372 57.895 0.00 0.00 0.00 3.71
187 188 0.942410 CGGGCGTGTCTCTTTCGAAA 60.942 55.000 10.71 10.71 0.00 3.46
188 189 1.439679 GGGCGTGTCTCTTTCGAAAT 58.560 50.000 11.70 0.00 0.00 2.17
189 190 1.128692 GGGCGTGTCTCTTTCGAAATG 59.871 52.381 11.70 7.79 0.00 2.32
190 191 1.128692 GGCGTGTCTCTTTCGAAATGG 59.871 52.381 11.70 7.41 0.00 3.16
191 192 1.128692 GCGTGTCTCTTTCGAAATGGG 59.871 52.381 11.70 6.00 0.00 4.00
192 193 2.683968 CGTGTCTCTTTCGAAATGGGA 58.316 47.619 11.70 8.30 0.00 4.37
193 194 3.064207 CGTGTCTCTTTCGAAATGGGAA 58.936 45.455 11.70 0.00 0.00 3.97
194 195 3.496884 CGTGTCTCTTTCGAAATGGGAAA 59.503 43.478 11.70 3.70 32.81 3.13
195 196 4.024387 CGTGTCTCTTTCGAAATGGGAAAA 60.024 41.667 11.70 1.33 33.37 2.29
196 197 5.504994 CGTGTCTCTTTCGAAATGGGAAAAA 60.505 40.000 11.70 0.00 33.37 1.94
197 198 5.685954 GTGTCTCTTTCGAAATGGGAAAAAC 59.314 40.000 11.70 7.00 33.37 2.43
198 199 5.220381 GTCTCTTTCGAAATGGGAAAAACC 58.780 41.667 11.70 0.00 33.37 3.27
199 200 4.890581 TCTCTTTCGAAATGGGAAAAACCA 59.109 37.500 11.70 0.00 46.24 3.67
208 209 0.246360 GGGAAAAACCATGCTTCCCG 59.754 55.000 13.97 0.00 46.70 5.14
209 210 0.966179 GGAAAAACCATGCTTCCCGT 59.034 50.000 0.00 0.00 38.79 5.28
210 211 1.343142 GGAAAAACCATGCTTCCCGTT 59.657 47.619 0.00 0.00 38.79 4.44
211 212 2.609491 GGAAAAACCATGCTTCCCGTTC 60.609 50.000 0.00 0.00 38.79 3.95
212 213 0.596082 AAAACCATGCTTCCCGTTCG 59.404 50.000 0.00 0.00 0.00 3.95
213 214 1.241315 AAACCATGCTTCCCGTTCGG 61.241 55.000 4.08 4.08 0.00 4.30
214 215 3.508840 CCATGCTTCCCGTTCGGC 61.509 66.667 5.66 0.00 0.00 5.54
215 216 2.436646 CATGCTTCCCGTTCGGCT 60.437 61.111 5.66 0.00 0.00 5.52
216 217 2.040544 CATGCTTCCCGTTCGGCTT 61.041 57.895 5.66 0.00 0.00 4.35
217 218 1.303317 ATGCTTCCCGTTCGGCTTT 60.303 52.632 5.66 0.00 0.00 3.51
218 219 0.893727 ATGCTTCCCGTTCGGCTTTT 60.894 50.000 5.66 0.00 0.00 2.27
219 220 1.104577 TGCTTCCCGTTCGGCTTTTT 61.105 50.000 5.66 0.00 0.00 1.94
220 221 0.386858 GCTTCCCGTTCGGCTTTTTC 60.387 55.000 5.66 0.00 0.00 2.29
221 222 0.110373 CTTCCCGTTCGGCTTTTTCG 60.110 55.000 5.66 0.00 0.00 3.46
222 223 0.814812 TTCCCGTTCGGCTTTTTCGT 60.815 50.000 5.66 0.00 0.00 3.85
223 224 1.205820 CCCGTTCGGCTTTTTCGTC 59.794 57.895 5.66 0.00 0.00 4.20
224 225 1.205820 CCGTTCGGCTTTTTCGTCC 59.794 57.895 0.00 0.00 0.00 4.79
225 226 1.226030 CCGTTCGGCTTTTTCGTCCT 61.226 55.000 0.00 0.00 0.00 3.85
226 227 0.110823 CGTTCGGCTTTTTCGTCCTG 60.111 55.000 0.00 0.00 0.00 3.86
227 228 0.942252 GTTCGGCTTTTTCGTCCTGT 59.058 50.000 0.00 0.00 0.00 4.00
228 229 1.332686 GTTCGGCTTTTTCGTCCTGTT 59.667 47.619 0.00 0.00 0.00 3.16
229 230 1.670791 TCGGCTTTTTCGTCCTGTTT 58.329 45.000 0.00 0.00 0.00 2.83
230 231 2.018515 TCGGCTTTTTCGTCCTGTTTT 58.981 42.857 0.00 0.00 0.00 2.43
231 232 2.424246 TCGGCTTTTTCGTCCTGTTTTT 59.576 40.909 0.00 0.00 0.00 1.94
280 281 9.480053 AAAAGTTCATCAAAACCTATCAACATG 57.520 29.630 0.00 0.00 0.00 3.21
281 282 7.161773 AGTTCATCAAAACCTATCAACATGG 57.838 36.000 0.00 0.00 0.00 3.66
282 283 6.153340 AGTTCATCAAAACCTATCAACATGGG 59.847 38.462 0.00 0.00 36.68 4.00
283 284 5.825532 TCATCAAAACCTATCAACATGGGA 58.174 37.500 0.00 0.00 34.16 4.37
284 285 6.434302 TCATCAAAACCTATCAACATGGGAT 58.566 36.000 0.00 2.37 34.16 3.85
285 286 6.321945 TCATCAAAACCTATCAACATGGGATG 59.678 38.462 11.21 0.00 34.16 3.51
287 288 6.726379 TCAAAACCTATCAACATGGGATGTA 58.274 36.000 11.21 0.00 44.07 2.29
288 289 6.828273 TCAAAACCTATCAACATGGGATGTAG 59.172 38.462 11.21 3.42 44.07 2.74
289 290 5.975988 AACCTATCAACATGGGATGTAGT 57.024 39.130 11.21 4.58 44.07 2.73
290 291 5.975988 ACCTATCAACATGGGATGTAGTT 57.024 39.130 11.21 0.00 44.07 2.24
291 292 6.327386 ACCTATCAACATGGGATGTAGTTT 57.673 37.500 11.21 0.00 44.07 2.66
292 293 6.731467 ACCTATCAACATGGGATGTAGTTTT 58.269 36.000 11.21 0.00 44.07 2.43
293 294 6.603201 ACCTATCAACATGGGATGTAGTTTTG 59.397 38.462 11.21 0.00 44.07 2.44
294 295 6.828273 CCTATCAACATGGGATGTAGTTTTGA 59.172 38.462 11.21 2.28 44.07 2.69
295 296 7.339212 CCTATCAACATGGGATGTAGTTTTGAA 59.661 37.037 11.21 0.00 44.07 2.69
296 297 7.722949 ATCAACATGGGATGTAGTTTTGAAT 57.277 32.000 0.00 0.00 44.07 2.57
297 298 8.821686 ATCAACATGGGATGTAGTTTTGAATA 57.178 30.769 0.00 0.00 44.07 1.75
298 299 8.821686 TCAACATGGGATGTAGTTTTGAATAT 57.178 30.769 0.00 0.00 44.07 1.28
299 300 8.902806 TCAACATGGGATGTAGTTTTGAATATC 58.097 33.333 0.00 0.00 44.07 1.63
300 301 8.906867 CAACATGGGATGTAGTTTTGAATATCT 58.093 33.333 0.00 0.00 44.07 1.98
301 302 8.682936 ACATGGGATGTAGTTTTGAATATCTC 57.317 34.615 0.00 0.00 42.78 2.75
302 303 7.442364 ACATGGGATGTAGTTTTGAATATCTCG 59.558 37.037 0.00 0.00 42.78 4.04
303 304 7.119709 TGGGATGTAGTTTTGAATATCTCGA 57.880 36.000 0.00 0.00 0.00 4.04
304 305 6.984474 TGGGATGTAGTTTTGAATATCTCGAC 59.016 38.462 0.00 0.00 0.00 4.20
305 306 6.144080 GGGATGTAGTTTTGAATATCTCGACG 59.856 42.308 0.00 0.00 0.00 5.12
306 307 5.944049 TGTAGTTTTGAATATCTCGACGC 57.056 39.130 0.00 0.00 0.00 5.19
307 308 4.497966 TGTAGTTTTGAATATCTCGACGCG 59.502 41.667 3.53 3.53 0.00 6.01
308 309 3.766151 AGTTTTGAATATCTCGACGCGA 58.234 40.909 15.93 0.00 0.00 5.87
318 319 2.733127 TCGACGCGAGGAATTCAAC 58.267 52.632 15.93 0.00 0.00 3.18
319 320 1.068832 TCGACGCGAGGAATTCAACG 61.069 55.000 15.93 12.65 0.00 4.10
320 321 1.068832 CGACGCGAGGAATTCAACGA 61.069 55.000 15.93 0.00 0.00 3.85
321 322 1.278238 GACGCGAGGAATTCAACGAT 58.722 50.000 15.93 11.81 0.00 3.73
322 323 0.999406 ACGCGAGGAATTCAACGATG 59.001 50.000 15.93 16.00 0.00 3.84
323 324 1.277326 CGCGAGGAATTCAACGATGA 58.723 50.000 21.48 0.00 0.00 2.92
334 335 4.617808 TTCAACGATGAAAACGGTTCAA 57.382 36.364 5.55 0.00 42.47 2.69
335 336 4.203950 TCAACGATGAAAACGGTTCAAG 57.796 40.909 7.74 7.75 35.94 3.02
336 337 3.872182 TCAACGATGAAAACGGTTCAAGA 59.128 39.130 7.74 0.73 35.94 3.02
337 338 4.513692 TCAACGATGAAAACGGTTCAAGAT 59.486 37.500 7.74 0.00 35.94 2.40
338 339 5.008217 TCAACGATGAAAACGGTTCAAGATT 59.992 36.000 7.74 1.22 35.94 2.40
339 340 5.432885 ACGATGAAAACGGTTCAAGATTT 57.567 34.783 7.74 0.00 35.94 2.17
340 341 5.212194 ACGATGAAAACGGTTCAAGATTTG 58.788 37.500 7.74 0.00 35.94 2.32
341 342 5.008217 ACGATGAAAACGGTTCAAGATTTGA 59.992 36.000 7.74 0.00 35.94 2.69
342 343 5.912396 CGATGAAAACGGTTCAAGATTTGAA 59.088 36.000 7.74 0.36 46.68 2.69
351 352 4.630894 TTCAAGATTTGAACGCACAGTT 57.369 36.364 0.36 0.00 44.21 3.16
352 353 4.630894 TCAAGATTTGAACGCACAGTTT 57.369 36.364 0.00 0.00 44.35 2.66
353 354 5.743026 TCAAGATTTGAACGCACAGTTTA 57.257 34.783 0.00 0.00 44.35 2.01
354 355 6.125327 TCAAGATTTGAACGCACAGTTTAA 57.875 33.333 0.00 0.00 44.35 1.52
356 357 7.030165 TCAAGATTTGAACGCACAGTTTAAAA 58.970 30.769 5.34 1.70 46.55 1.52
357 358 7.542477 TCAAGATTTGAACGCACAGTTTAAAAA 59.458 29.630 5.34 0.00 46.55 1.94
389 390 8.984891 TGTTTTAAATAAACGGATCTACGAGA 57.015 30.769 0.00 0.00 37.61 4.04
390 391 9.421806 TGTTTTAAATAAACGGATCTACGAGAA 57.578 29.630 0.00 0.00 37.61 2.87
395 396 7.535489 AATAAACGGATCTACGAGAAAAAGG 57.465 36.000 0.00 0.00 37.61 3.11
396 397 4.796038 AACGGATCTACGAGAAAAAGGA 57.204 40.909 0.00 0.00 37.61 3.36
397 398 4.796038 ACGGATCTACGAGAAAAAGGAA 57.204 40.909 0.00 0.00 37.61 3.36
398 399 5.143376 ACGGATCTACGAGAAAAAGGAAA 57.857 39.130 0.00 0.00 37.61 3.13
399 400 5.544650 ACGGATCTACGAGAAAAAGGAAAA 58.455 37.500 0.00 0.00 37.61 2.29
400 401 5.407691 ACGGATCTACGAGAAAAAGGAAAAC 59.592 40.000 0.00 0.00 37.61 2.43
401 402 5.638234 CGGATCTACGAGAAAAAGGAAAACT 59.362 40.000 0.00 0.00 35.47 2.66
402 403 6.183360 CGGATCTACGAGAAAAAGGAAAACTC 60.183 42.308 0.00 0.00 35.47 3.01
403 404 6.092396 GGATCTACGAGAAAAAGGAAAACTCC 59.908 42.308 0.00 0.00 0.00 3.85
404 405 6.170846 TCTACGAGAAAAAGGAAAACTCCT 57.829 37.500 0.00 0.00 43.04 3.69
405 406 5.989777 TCTACGAGAAAAAGGAAAACTCCTG 59.010 40.000 0.00 0.00 40.59 3.86
406 407 3.883489 ACGAGAAAAAGGAAAACTCCTGG 59.117 43.478 0.00 0.00 40.59 4.45
407 408 3.883489 CGAGAAAAAGGAAAACTCCTGGT 59.117 43.478 0.00 0.00 40.59 4.00
408 409 4.338400 CGAGAAAAAGGAAAACTCCTGGTT 59.662 41.667 0.00 0.00 40.59 3.67
409 410 5.592054 GAGAAAAAGGAAAACTCCTGGTTG 58.408 41.667 0.00 0.00 40.59 3.77
410 411 3.819564 AAAAGGAAAACTCCTGGTTGC 57.180 42.857 0.00 0.00 40.59 4.17
411 412 1.318576 AAGGAAAACTCCTGGTTGCG 58.681 50.000 0.00 0.00 40.59 4.85
412 413 0.472471 AGGAAAACTCCTGGTTGCGA 59.528 50.000 0.00 0.00 38.98 5.10
413 414 0.591659 GGAAAACTCCTGGTTGCGAC 59.408 55.000 0.00 0.00 38.29 5.19
414 415 1.305201 GAAAACTCCTGGTTGCGACA 58.695 50.000 6.39 0.00 38.29 4.35
415 416 1.673920 GAAAACTCCTGGTTGCGACAA 59.326 47.619 6.39 0.00 38.29 3.18
416 417 1.308998 AAACTCCTGGTTGCGACAAG 58.691 50.000 6.39 3.57 38.29 3.16
417 418 0.180406 AACTCCTGGTTGCGACAAGT 59.820 50.000 7.74 1.82 36.70 3.16
418 419 0.532862 ACTCCTGGTTGCGACAAGTG 60.533 55.000 7.74 2.87 0.00 3.16
419 420 1.227823 TCCTGGTTGCGACAAGTGG 60.228 57.895 7.74 3.10 0.00 4.00
420 421 2.639286 CTGGTTGCGACAAGTGGC 59.361 61.111 6.39 0.00 34.76 5.01
427 428 2.174107 CGACAAGTGGCGCACATG 59.826 61.111 10.83 11.41 40.91 3.21
428 429 2.126734 GACAAGTGGCGCACATGC 60.127 61.111 10.83 0.00 36.67 4.06
429 430 2.906388 ACAAGTGGCGCACATGCA 60.906 55.556 10.83 0.00 36.67 3.96
430 431 2.126618 CAAGTGGCGCACATGCAG 60.127 61.111 10.83 0.00 42.21 4.41
431 432 4.047059 AAGTGGCGCACATGCAGC 62.047 61.111 10.83 8.22 42.21 5.25
439 440 3.359523 CACATGCAGCACGCCACT 61.360 61.111 0.00 0.00 41.33 4.00
440 441 2.595463 ACATGCAGCACGCCACTT 60.595 55.556 0.00 0.00 41.33 3.16
441 442 2.126618 CATGCAGCACGCCACTTG 60.127 61.111 0.00 0.00 41.33 3.16
442 443 2.595463 ATGCAGCACGCCACTTGT 60.595 55.556 0.00 0.00 41.33 3.16
443 444 2.620112 ATGCAGCACGCCACTTGTC 61.620 57.895 0.00 0.00 41.33 3.18
444 445 3.279116 GCAGCACGCCACTTGTCA 61.279 61.111 0.00 0.00 32.94 3.58
445 446 2.633657 CAGCACGCCACTTGTCAC 59.366 61.111 0.00 0.00 0.00 3.67
446 447 2.179547 CAGCACGCCACTTGTCACA 61.180 57.895 0.00 0.00 0.00 3.58
447 448 1.451207 AGCACGCCACTTGTCACAA 60.451 52.632 0.00 0.00 0.00 3.33
448 449 1.298339 GCACGCCACTTGTCACAAC 60.298 57.895 0.00 0.00 0.00 3.32
449 450 1.355210 CACGCCACTTGTCACAACC 59.645 57.895 0.00 0.00 0.00 3.77
450 451 1.095228 CACGCCACTTGTCACAACCT 61.095 55.000 0.00 0.00 0.00 3.50
451 452 1.095228 ACGCCACTTGTCACAACCTG 61.095 55.000 0.00 0.00 0.00 4.00
452 453 1.785041 CGCCACTTGTCACAACCTGG 61.785 60.000 5.40 5.40 0.00 4.45
453 454 1.455383 GCCACTTGTCACAACCTGGG 61.455 60.000 10.40 0.97 0.00 4.45
454 455 0.182537 CCACTTGTCACAACCTGGGA 59.817 55.000 0.00 0.00 0.00 4.37
455 456 1.409521 CCACTTGTCACAACCTGGGAA 60.410 52.381 0.00 0.00 27.62 3.97
456 457 1.949525 CACTTGTCACAACCTGGGAAG 59.050 52.381 0.00 0.00 27.62 3.46
457 458 1.843851 ACTTGTCACAACCTGGGAAGA 59.156 47.619 0.00 0.00 27.62 2.87
458 459 2.443255 ACTTGTCACAACCTGGGAAGAT 59.557 45.455 0.00 0.00 27.62 2.40
459 460 2.566833 TGTCACAACCTGGGAAGATG 57.433 50.000 0.00 0.00 27.62 2.90
460 461 1.073763 TGTCACAACCTGGGAAGATGG 59.926 52.381 0.00 0.00 27.62 3.51
461 462 0.698238 TCACAACCTGGGAAGATGGG 59.302 55.000 0.00 0.00 0.00 4.00
462 463 0.323725 CACAACCTGGGAAGATGGGG 60.324 60.000 0.00 0.00 0.00 4.96
463 464 0.776080 ACAACCTGGGAAGATGGGGT 60.776 55.000 0.00 0.00 0.00 4.95
464 465 0.323725 CAACCTGGGAAGATGGGGTG 60.324 60.000 0.00 0.00 0.00 4.61
465 466 0.477597 AACCTGGGAAGATGGGGTGA 60.478 55.000 0.00 0.00 0.00 4.02
466 467 0.253820 ACCTGGGAAGATGGGGTGAT 60.254 55.000 0.00 0.00 0.00 3.06
467 468 0.475906 CCTGGGAAGATGGGGTGATC 59.524 60.000 0.00 0.00 0.00 2.92
468 469 1.516110 CTGGGAAGATGGGGTGATCT 58.484 55.000 0.00 0.00 33.91 2.75
469 470 1.849039 CTGGGAAGATGGGGTGATCTT 59.151 52.381 0.00 0.00 43.92 2.40
470 471 2.243221 CTGGGAAGATGGGGTGATCTTT 59.757 50.000 0.00 0.00 41.78 2.52
471 472 2.025037 TGGGAAGATGGGGTGATCTTTG 60.025 50.000 0.00 0.00 41.78 2.77
472 473 2.027385 GGAAGATGGGGTGATCTTTGC 58.973 52.381 0.00 0.00 41.78 3.68
473 474 2.621407 GGAAGATGGGGTGATCTTTGCA 60.621 50.000 0.00 0.00 41.78 4.08
474 475 2.905415 AGATGGGGTGATCTTTGCAA 57.095 45.000 0.00 0.00 27.38 4.08
475 476 2.450476 AGATGGGGTGATCTTTGCAAC 58.550 47.619 0.00 0.00 27.38 4.17
476 477 1.133025 GATGGGGTGATCTTTGCAACG 59.867 52.381 0.00 0.00 0.00 4.10
477 478 0.109532 TGGGGTGATCTTTGCAACGA 59.890 50.000 8.20 8.20 0.00 3.85
478 479 0.804989 GGGGTGATCTTTGCAACGAG 59.195 55.000 11.57 1.70 0.00 4.18
479 480 1.523758 GGGTGATCTTTGCAACGAGT 58.476 50.000 11.57 0.34 0.00 4.18
480 481 2.614481 GGGGTGATCTTTGCAACGAGTA 60.614 50.000 11.57 0.27 0.00 2.59
481 482 2.415512 GGGTGATCTTTGCAACGAGTAC 59.584 50.000 11.57 11.56 0.00 2.73
482 483 3.326747 GGTGATCTTTGCAACGAGTACT 58.673 45.455 11.57 0.00 0.00 2.73
483 484 3.368236 GGTGATCTTTGCAACGAGTACTC 59.632 47.826 13.18 13.18 0.00 2.59
484 485 3.368236 GTGATCTTTGCAACGAGTACTCC 59.632 47.826 17.23 3.69 0.00 3.85
485 486 3.258372 TGATCTTTGCAACGAGTACTCCT 59.742 43.478 17.23 2.73 0.00 3.69
486 487 3.746045 TCTTTGCAACGAGTACTCCTT 57.254 42.857 17.23 9.18 0.00 3.36
487 488 4.067972 TCTTTGCAACGAGTACTCCTTT 57.932 40.909 17.23 7.84 0.00 3.11
488 489 4.448210 TCTTTGCAACGAGTACTCCTTTT 58.552 39.130 17.23 5.36 0.00 2.27
489 490 4.510340 TCTTTGCAACGAGTACTCCTTTTC 59.490 41.667 17.23 6.02 0.00 2.29
490 491 2.400399 TGCAACGAGTACTCCTTTTCG 58.600 47.619 17.23 7.80 38.88 3.46
494 495 2.673833 ACGAGTACTCCTTTTCGCAAG 58.326 47.619 17.23 1.71 36.58 4.01
512 513 8.426881 TTCGCAAGCAGTAATTACACAATATA 57.573 30.769 17.65 0.00 37.18 0.86
624 625 2.700773 GCACCCACGATTTGCCTCC 61.701 63.158 0.00 0.00 0.00 4.30
660 661 1.153289 CCCACGATTGCCTCCTCAG 60.153 63.158 0.00 0.00 0.00 3.35
661 662 1.599047 CCACGATTGCCTCCTCAGT 59.401 57.895 0.00 0.00 0.00 3.41
662 663 0.460987 CCACGATTGCCTCCTCAGTC 60.461 60.000 0.00 0.00 0.00 3.51
665 666 1.347707 ACGATTGCCTCCTCAGTCAAA 59.652 47.619 0.00 0.00 0.00 2.69
666 667 2.224523 ACGATTGCCTCCTCAGTCAAAA 60.225 45.455 0.00 0.00 0.00 2.44
667 668 2.813754 CGATTGCCTCCTCAGTCAAAAA 59.186 45.455 0.00 0.00 0.00 1.94
907 929 1.281925 ATCAGGTTCGGCCCCTCAAT 61.282 55.000 0.00 0.00 38.26 2.57
935 957 6.251549 GCGATCTCAACTCTGGAATTTTAAC 58.748 40.000 0.00 0.00 0.00 2.01
950 972 8.759641 TGGAATTTTAACAAATGTCAATGTTCG 58.240 29.630 9.83 0.00 40.14 3.95
1096 1121 2.808206 GCCAGCGGCTACCACCTAT 61.808 63.158 0.26 0.00 46.69 2.57
1114 1139 1.072266 ATTTGTGGTGGAGGGCTACA 58.928 50.000 0.00 0.00 0.00 2.74
1132 1157 2.731217 ACACGCAAACAAAAGAGATGC 58.269 42.857 0.00 0.00 0.00 3.91
1150 1175 3.112126 CTACCCAATGGCAAGCGCG 62.112 63.158 0.00 0.00 39.92 6.86
1226 1251 2.661537 CGGTGACAGCTCGCACAA 60.662 61.111 15.21 0.00 36.76 3.33
1260 1288 2.472029 TCCCTCCATCTTGTCCTTCTC 58.528 52.381 0.00 0.00 0.00 2.87
1287 1318 2.746277 GTCGCCAAGCCCGTGAAT 60.746 61.111 0.00 0.00 0.00 2.57
1340 1371 5.105228 AGGTTGAGTGGCAAAATCCAATATG 60.105 40.000 0.00 0.00 38.44 1.78
1373 1404 1.138069 TCAAACACACAGCTTCTCCGA 59.862 47.619 0.00 0.00 0.00 4.55
1428 1459 3.269178 GAGAAGAGATGCCCTTGAACAG 58.731 50.000 0.00 0.00 0.00 3.16
1581 4694 0.605589 AAACCAAGGTAGGCGCTGAC 60.606 55.000 7.64 5.41 0.00 3.51
1710 4826 4.173256 CTGCAACGTGTGACATACAGATA 58.827 43.478 3.10 0.00 40.69 1.98
1774 4890 4.777366 TCATCTACACAGACTCATTTCCCA 59.223 41.667 0.00 0.00 32.25 4.37
1786 4902 5.444176 ACTCATTTCCCAAGATGGAGAATC 58.556 41.667 0.00 0.00 40.96 2.52
1799 4945 3.109928 TGGAGAATCATGAGGCAGAAGA 58.890 45.455 0.09 0.00 36.25 2.87
1816 4962 5.647225 GCAGAAGATGAGGAAGAACAAGAAT 59.353 40.000 0.00 0.00 0.00 2.40
1837 4986 6.766944 AGAATTGGATGAAGAAGTCTATGCAG 59.233 38.462 0.00 0.00 0.00 4.41
2008 5157 0.383231 CGATTTGAAGGAGGCATGCC 59.617 55.000 30.12 30.12 0.00 4.40
2020 5169 0.383231 GGCATGCCTGAATTTCCTCG 59.617 55.000 29.98 0.00 0.00 4.63
2106 5255 6.600822 CAGTCACATATCCCTCTGTTTTGAAT 59.399 38.462 0.00 0.00 0.00 2.57
2147 5296 4.515432 GCTTCGAAAGCGTAATTACATCC 58.485 43.478 15.67 3.53 45.74 3.51
2170 5321 6.070995 TCCGATAATGTATATGTGAGGTTCCC 60.071 42.308 0.00 0.00 0.00 3.97
2213 5364 6.792250 GTGTGTCTTACTTTTGATTCATGACG 59.208 38.462 0.00 0.00 0.00 4.35
2218 5416 6.481976 TCTTACTTTTGATTCATGACGTGTGT 59.518 34.615 0.00 0.00 0.00 3.72
2219 5417 4.847633 ACTTTTGATTCATGACGTGTGTG 58.152 39.130 0.00 0.00 0.00 3.82
2220 5418 3.894782 TTTGATTCATGACGTGTGTGG 57.105 42.857 0.00 0.00 0.00 4.17
2221 5419 2.542020 TGATTCATGACGTGTGTGGT 57.458 45.000 0.00 0.00 0.00 4.16
2222 5420 2.412870 TGATTCATGACGTGTGTGGTC 58.587 47.619 0.00 0.00 34.99 4.02
2223 5421 1.390123 GATTCATGACGTGTGTGGTCG 59.610 52.381 0.00 0.00 37.22 4.79
2224 5422 0.103390 TTCATGACGTGTGTGGTCGT 59.897 50.000 0.00 0.00 43.00 4.34
2225 5423 1.852648 CATGACGTGTGTGGTCGTG 59.147 57.895 0.00 0.35 42.86 4.35
2226 5424 1.300620 ATGACGTGTGTGGTCGTGG 60.301 57.895 0.00 0.00 40.39 4.94
2227 5425 1.740332 ATGACGTGTGTGGTCGTGGA 61.740 55.000 0.00 0.00 40.39 4.02
2228 5426 1.660575 GACGTGTGTGGTCGTGGAG 60.661 63.158 0.00 0.00 40.39 3.86
2245 5443 7.412672 GGTCGTGGAGTAAATGATCTTGTAAAC 60.413 40.741 0.00 0.00 0.00 2.01
2300 5498 1.270839 GCACTGTGCAAGTTCCCTAGA 60.271 52.381 26.70 0.00 44.26 2.43
2306 5504 1.275291 TGCAAGTTCCCTAGAAGTCGG 59.725 52.381 0.00 0.00 34.43 4.79
2349 5656 2.358615 TGCTCGGCGCATTGTCTT 60.359 55.556 10.83 0.00 45.47 3.01
2350 5657 2.099062 GCTCGGCGCATTGTCTTG 59.901 61.111 10.83 0.00 38.92 3.02
2352 5659 1.421485 CTCGGCGCATTGTCTTGTC 59.579 57.895 10.83 0.00 0.00 3.18
2372 5681 8.958506 TCTTGTCTACTACCTCTAGATGTTTTC 58.041 37.037 5.96 0.00 0.00 2.29
2384 5693 7.094463 CCTCTAGATGTTTTCTGAAAATGCAGT 60.094 37.037 17.63 7.35 37.20 4.40
2425 5734 8.099364 TCAAATAAAACAGAGTCACCAAGATC 57.901 34.615 0.00 0.00 0.00 2.75
2441 5750 4.574013 CCAAGATCTCTGGTTACAGCAATC 59.426 45.833 13.02 0.00 44.54 2.67
2466 5775 3.134081 GGAAATCTCGATCCAGTACCCAA 59.866 47.826 0.00 0.00 35.71 4.12
2508 5817 7.492344 CCTAATATTTTTCCTTTGGTGATGTGC 59.508 37.037 0.00 0.00 0.00 4.57
2520 5829 1.451927 GATGTGCGCCATGGAAGGA 60.452 57.895 18.40 6.87 32.56 3.36
2526 5835 1.144936 CGCCATGGAAGGAGAGGTC 59.855 63.158 18.40 0.00 0.00 3.85
2527 5836 1.617018 CGCCATGGAAGGAGAGGTCA 61.617 60.000 18.40 0.00 0.00 4.02
2528 5837 0.179936 GCCATGGAAGGAGAGGTCAG 59.820 60.000 18.40 0.00 0.00 3.51
2529 5838 0.179936 CCATGGAAGGAGAGGTCAGC 59.820 60.000 5.56 0.00 0.00 4.26
2530 5839 0.907486 CATGGAAGGAGAGGTCAGCA 59.093 55.000 0.00 0.00 0.00 4.41
2531 5840 1.489649 CATGGAAGGAGAGGTCAGCAT 59.510 52.381 0.00 0.00 0.00 3.79
2532 5841 1.661463 TGGAAGGAGAGGTCAGCATT 58.339 50.000 0.00 0.00 0.00 3.56
2533 5842 1.556911 TGGAAGGAGAGGTCAGCATTC 59.443 52.381 0.00 0.00 0.00 2.67
2534 5843 1.134250 GGAAGGAGAGGTCAGCATTCC 60.134 57.143 0.00 0.00 0.00 3.01
2535 5844 1.556911 GAAGGAGAGGTCAGCATTCCA 59.443 52.381 0.21 0.00 0.00 3.53
2536 5845 0.908198 AGGAGAGGTCAGCATTCCAC 59.092 55.000 0.21 0.00 0.00 4.02
2537 5846 0.615331 GGAGAGGTCAGCATTCCACA 59.385 55.000 0.00 0.00 0.00 4.17
2538 5847 1.003580 GGAGAGGTCAGCATTCCACAA 59.996 52.381 0.00 0.00 0.00 3.33
2539 5848 2.553028 GGAGAGGTCAGCATTCCACAAA 60.553 50.000 0.00 0.00 0.00 2.83
2540 5849 3.350833 GAGAGGTCAGCATTCCACAAAT 58.649 45.455 0.00 0.00 0.00 2.32
2541 5850 3.087031 AGAGGTCAGCATTCCACAAATG 58.913 45.455 0.00 0.00 46.37 2.32
2542 5851 3.084039 GAGGTCAGCATTCCACAAATGA 58.916 45.455 2.07 0.00 46.54 2.57
2543 5852 3.698040 GAGGTCAGCATTCCACAAATGAT 59.302 43.478 2.07 0.00 46.54 2.45
2591 5900 2.556622 ACTTTCGGCCTGGTGTATTTTG 59.443 45.455 0.00 0.00 0.00 2.44
2605 5914 5.587844 GGTGTATTTTGAGAGCACAGATGAT 59.412 40.000 0.00 0.00 0.00 2.45
2693 6002 3.114606 TCTCATCTGGCCTTTATCACCA 58.885 45.455 3.32 0.00 0.00 4.17
2702 6011 3.003480 GCCTTTATCACCATAGCGATCC 58.997 50.000 0.00 0.00 0.00 3.36
2708 6017 7.364232 CCTTTATCACCATAGCGATCCTTCTAT 60.364 40.741 0.00 0.00 0.00 1.98
2733 6042 9.614792 ATGTTCTTGAACTAGGAATAACCATAC 57.385 33.333 13.65 0.00 42.04 2.39
2734 6043 8.822805 TGTTCTTGAACTAGGAATAACCATACT 58.177 33.333 13.65 0.00 42.04 2.12
2805 6116 6.373779 GTTGGCCAACGATCATTCTTATATG 58.626 40.000 31.73 0.00 0.00 1.78
2879 6190 6.844696 TCATACACTGACAGTTTCTCAAAC 57.155 37.500 5.04 0.00 41.69 2.93
2897 6208 2.949177 ACTTGCCATGGTGTTACTCA 57.051 45.000 14.67 0.00 0.00 3.41
2934 6245 0.386476 TTTGGTGCTTCTGCTTGCAG 59.614 50.000 15.74 15.74 40.06 4.41
3032 6343 0.316689 GACAACGCAACCAAAGTCCG 60.317 55.000 0.00 0.00 0.00 4.79
3037 6348 1.860078 GCAACCAAAGTCCGTCTCG 59.140 57.895 0.00 0.00 0.00 4.04
3071 6382 7.071698 ACCATCATGTCCTGATCAACTATAGTT 59.928 37.037 12.50 12.50 42.91 2.24
3118 6429 3.831323 TCATGGTTGTGTTGTCCTCATT 58.169 40.909 0.00 0.00 0.00 2.57
3137 6448 5.255687 TCATTATTGCAAGAGGTGTGTCAT 58.744 37.500 4.94 0.00 0.00 3.06
3138 6449 5.711506 TCATTATTGCAAGAGGTGTGTCATT 59.288 36.000 4.94 0.00 0.00 2.57
3139 6450 3.928727 ATTGCAAGAGGTGTGTCATTG 57.071 42.857 4.94 0.00 0.00 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.403049 AGAGAAAAACCGGAAAACATGTTTT 58.597 32.000 31.40 31.40 44.59 2.43
2 3 5.972935 AGAGAAAAACCGGAAAACATGTTT 58.027 33.333 18.13 18.13 32.62 2.83
3 4 5.592104 AGAGAAAAACCGGAAAACATGTT 57.408 34.783 9.46 4.92 0.00 2.71
4 5 5.592104 AAGAGAAAAACCGGAAAACATGT 57.408 34.783 9.46 0.00 0.00 3.21
5 6 6.039616 TGAAAGAGAAAAACCGGAAAACATG 58.960 36.000 9.46 0.00 0.00 3.21
6 7 6.215495 TGAAAGAGAAAAACCGGAAAACAT 57.785 33.333 9.46 0.00 0.00 2.71
7 8 5.646577 TGAAAGAGAAAAACCGGAAAACA 57.353 34.783 9.46 0.00 0.00 2.83
8 9 6.270064 TCATGAAAGAGAAAAACCGGAAAAC 58.730 36.000 9.46 0.00 0.00 2.43
9 10 6.320164 TCTCATGAAAGAGAAAAACCGGAAAA 59.680 34.615 9.46 0.00 41.45 2.29
10 11 5.825679 TCTCATGAAAGAGAAAAACCGGAAA 59.174 36.000 9.46 0.00 41.45 3.13
11 12 5.373222 TCTCATGAAAGAGAAAAACCGGAA 58.627 37.500 9.46 0.00 41.45 4.30
12 13 4.968259 TCTCATGAAAGAGAAAAACCGGA 58.032 39.130 9.46 0.00 41.45 5.14
13 14 4.154918 CCTCTCATGAAAGAGAAAAACCGG 59.845 45.833 12.38 0.00 44.67 5.28
14 15 4.378874 GCCTCTCATGAAAGAGAAAAACCG 60.379 45.833 12.38 0.00 44.67 4.44
15 16 4.520492 TGCCTCTCATGAAAGAGAAAAACC 59.480 41.667 12.38 0.00 44.67 3.27
16 17 5.695851 TGCCTCTCATGAAAGAGAAAAAC 57.304 39.130 12.38 0.09 44.67 2.43
29 30 2.877975 GCACAACCATGCCTCTCAT 58.122 52.632 0.00 0.00 39.86 2.90
30 31 4.402851 GCACAACCATGCCTCTCA 57.597 55.556 0.00 0.00 39.86 3.27
36 37 0.597118 TCGCAAAAGCACAACCATGC 60.597 50.000 0.00 0.00 46.50 4.06
37 38 1.001487 TCTCGCAAAAGCACAACCATG 60.001 47.619 0.00 0.00 0.00 3.66
38 39 1.267806 CTCTCGCAAAAGCACAACCAT 59.732 47.619 0.00 0.00 0.00 3.55
39 40 0.662619 CTCTCGCAAAAGCACAACCA 59.337 50.000 0.00 0.00 0.00 3.67
40 41 0.040067 CCTCTCGCAAAAGCACAACC 60.040 55.000 0.00 0.00 0.00 3.77
41 42 0.661483 GCCTCTCGCAAAAGCACAAC 60.661 55.000 0.00 0.00 37.47 3.32
42 43 1.654220 GCCTCTCGCAAAAGCACAA 59.346 52.632 0.00 0.00 37.47 3.33
43 44 3.343972 GCCTCTCGCAAAAGCACA 58.656 55.556 0.00 0.00 37.47 4.57
62 63 3.835790 TTTTCAGGGGGCACGGTCG 62.836 63.158 0.00 0.00 0.00 4.79
63 64 1.524008 CTTTTTCAGGGGGCACGGTC 61.524 60.000 0.00 0.00 0.00 4.79
64 65 1.530655 CTTTTTCAGGGGGCACGGT 60.531 57.895 0.00 0.00 0.00 4.83
65 66 0.825840 TTCTTTTTCAGGGGGCACGG 60.826 55.000 0.00 0.00 0.00 4.94
66 67 1.036707 TTTCTTTTTCAGGGGGCACG 58.963 50.000 0.00 0.00 0.00 5.34
67 68 3.552132 TTTTTCTTTTTCAGGGGGCAC 57.448 42.857 0.00 0.00 0.00 5.01
101 102 1.142060 TGCCTCTCACGGAAGGAAAAA 59.858 47.619 0.00 0.00 0.00 1.94
102 103 0.762418 TGCCTCTCACGGAAGGAAAA 59.238 50.000 0.00 0.00 0.00 2.29
103 104 0.034896 GTGCCTCTCACGGAAGGAAA 59.965 55.000 0.00 0.00 35.76 3.13
104 105 1.671742 GTGCCTCTCACGGAAGGAA 59.328 57.895 0.00 0.00 35.76 3.36
105 106 3.377656 GTGCCTCTCACGGAAGGA 58.622 61.111 0.00 0.00 35.76 3.36
112 113 1.166531 AGCAAAACCGTGCCTCTCAC 61.167 55.000 0.00 0.00 46.14 3.51
113 114 0.465460 AAGCAAAACCGTGCCTCTCA 60.465 50.000 0.00 0.00 46.14 3.27
114 115 0.238553 GAAGCAAAACCGTGCCTCTC 59.761 55.000 0.00 0.00 46.14 3.20
115 116 1.172812 GGAAGCAAAACCGTGCCTCT 61.173 55.000 0.00 0.00 46.14 3.69
116 117 1.285950 GGAAGCAAAACCGTGCCTC 59.714 57.895 0.00 0.00 46.14 4.70
117 118 2.551912 CGGAAGCAAAACCGTGCCT 61.552 57.895 0.00 0.00 46.14 4.75
118 119 2.050442 CGGAAGCAAAACCGTGCC 60.050 61.111 0.00 0.00 46.14 5.01
134 135 0.098200 TCACAACCGTATCTCTCGCG 59.902 55.000 0.00 0.00 0.00 5.87
135 136 2.493713 ATCACAACCGTATCTCTCGC 57.506 50.000 0.00 0.00 0.00 5.03
136 137 4.265556 GTGAAATCACAACCGTATCTCTCG 59.734 45.833 8.63 0.00 45.75 4.04
137 138 4.265556 CGTGAAATCACAACCGTATCTCTC 59.734 45.833 13.51 0.00 46.75 3.20
138 139 4.082408 TCGTGAAATCACAACCGTATCTCT 60.082 41.667 13.51 0.00 46.75 3.10
139 140 4.171005 TCGTGAAATCACAACCGTATCTC 58.829 43.478 13.51 0.00 46.75 2.75
140 141 4.082408 TCTCGTGAAATCACAACCGTATCT 60.082 41.667 13.51 0.00 46.75 1.98
141 142 4.171005 TCTCGTGAAATCACAACCGTATC 58.829 43.478 13.51 0.00 46.75 2.24
142 143 4.174009 CTCTCGTGAAATCACAACCGTAT 58.826 43.478 13.51 0.00 46.75 3.06
143 144 3.571571 CTCTCGTGAAATCACAACCGTA 58.428 45.455 13.51 0.00 46.75 4.02
144 145 2.404215 CTCTCGTGAAATCACAACCGT 58.596 47.619 13.51 0.00 46.75 4.83
145 146 1.726791 CCTCTCGTGAAATCACAACCG 59.273 52.381 13.51 0.15 46.75 4.44
146 147 1.464997 GCCTCTCGTGAAATCACAACC 59.535 52.381 13.51 0.00 46.75 3.77
147 148 2.096218 GTGCCTCTCGTGAAATCACAAC 60.096 50.000 13.51 0.00 46.75 3.32
148 149 2.143122 GTGCCTCTCGTGAAATCACAA 58.857 47.619 13.51 0.00 46.75 3.33
149 150 1.795768 GTGCCTCTCGTGAAATCACA 58.204 50.000 13.51 0.97 46.75 3.58
150 151 0.716108 CGTGCCTCTCGTGAAATCAC 59.284 55.000 3.43 3.43 43.15 3.06
151 152 0.389817 CCGTGCCTCTCGTGAAATCA 60.390 55.000 0.00 0.00 0.00 2.57
152 153 1.084370 CCCGTGCCTCTCGTGAAATC 61.084 60.000 0.00 0.00 0.00 2.17
153 154 1.079127 CCCGTGCCTCTCGTGAAAT 60.079 57.895 0.00 0.00 0.00 2.17
154 155 2.342279 CCCGTGCCTCTCGTGAAA 59.658 61.111 0.00 0.00 0.00 2.69
155 156 4.373116 GCCCGTGCCTCTCGTGAA 62.373 66.667 0.00 0.00 0.00 3.18
166 167 2.742710 TCGAAAGAGACACGCCCGTG 62.743 60.000 18.19 18.19 42.94 4.94
167 168 2.049433 CGAAAGAGACACGCCCGT 60.049 61.111 0.00 0.00 0.00 5.28
168 169 0.942410 TTTCGAAAGAGACACGCCCG 60.942 55.000 6.47 0.00 43.69 6.13
169 170 1.128692 CATTTCGAAAGAGACACGCCC 59.871 52.381 16.80 0.00 43.69 6.13
170 171 1.128692 CCATTTCGAAAGAGACACGCC 59.871 52.381 16.80 0.00 43.69 5.68
171 172 1.128692 CCCATTTCGAAAGAGACACGC 59.871 52.381 16.80 0.00 43.69 5.34
172 173 2.683968 TCCCATTTCGAAAGAGACACG 58.316 47.619 16.80 0.00 43.69 4.49
173 174 5.432885 TTTTCCCATTTCGAAAGAGACAC 57.567 39.130 16.80 0.00 43.69 3.67
174 175 5.221165 GGTTTTTCCCATTTCGAAAGAGACA 60.221 40.000 16.80 3.41 43.69 3.41
175 176 5.220381 GGTTTTTCCCATTTCGAAAGAGAC 58.780 41.667 16.80 8.05 43.69 3.36
176 177 4.890581 TGGTTTTTCCCATTTCGAAAGAGA 59.109 37.500 16.80 9.62 37.03 3.10
177 178 5.195001 TGGTTTTTCCCATTTCGAAAGAG 57.805 39.130 16.80 10.97 37.03 2.85
178 179 5.537188 CATGGTTTTTCCCATTTCGAAAGA 58.463 37.500 16.80 5.50 42.70 2.52
179 180 4.152223 GCATGGTTTTTCCCATTTCGAAAG 59.848 41.667 16.80 8.32 42.70 2.62
180 181 4.061596 GCATGGTTTTTCCCATTTCGAAA 58.938 39.130 13.91 13.91 42.70 3.46
181 182 3.323403 AGCATGGTTTTTCCCATTTCGAA 59.677 39.130 0.00 0.00 42.70 3.71
182 183 2.896685 AGCATGGTTTTTCCCATTTCGA 59.103 40.909 0.00 0.00 42.70 3.71
183 184 3.317603 AGCATGGTTTTTCCCATTTCG 57.682 42.857 0.00 0.00 42.70 3.46
184 185 4.002982 GGAAGCATGGTTTTTCCCATTTC 58.997 43.478 12.13 0.00 42.70 2.17
185 186 4.019792 GGAAGCATGGTTTTTCCCATTT 57.980 40.909 12.13 0.00 42.70 2.32
186 187 3.701205 GGAAGCATGGTTTTTCCCATT 57.299 42.857 12.13 0.00 42.70 3.16
190 191 0.966179 ACGGGAAGCATGGTTTTTCC 59.034 50.000 12.13 8.56 39.69 3.13
191 192 2.672714 GAACGGGAAGCATGGTTTTTC 58.327 47.619 12.13 8.63 0.00 2.29
192 193 1.000717 CGAACGGGAAGCATGGTTTTT 60.001 47.619 12.13 3.30 0.00 1.94
193 194 0.596082 CGAACGGGAAGCATGGTTTT 59.404 50.000 12.13 1.56 0.00 2.43
194 195 1.241315 CCGAACGGGAAGCATGGTTT 61.241 55.000 12.13 0.00 38.47 3.27
195 196 1.674322 CCGAACGGGAAGCATGGTT 60.674 57.895 10.50 10.50 38.47 3.67
196 197 2.046314 CCGAACGGGAAGCATGGT 60.046 61.111 5.25 0.00 38.47 3.55
197 198 3.508840 GCCGAACGGGAAGCATGG 61.509 66.667 15.01 0.00 38.47 3.66
198 199 1.586154 AAAGCCGAACGGGAAGCATG 61.586 55.000 15.01 0.00 38.47 4.06
199 200 0.893727 AAAAGCCGAACGGGAAGCAT 60.894 50.000 15.01 0.00 38.47 3.79
200 201 1.104577 AAAAAGCCGAACGGGAAGCA 61.105 50.000 15.01 0.00 38.47 3.91
201 202 0.386858 GAAAAAGCCGAACGGGAAGC 60.387 55.000 15.01 0.50 38.47 3.86
202 203 0.110373 CGAAAAAGCCGAACGGGAAG 60.110 55.000 15.01 0.00 38.47 3.46
203 204 0.814812 ACGAAAAAGCCGAACGGGAA 60.815 50.000 15.01 0.00 38.47 3.97
204 205 1.223417 GACGAAAAAGCCGAACGGGA 61.223 55.000 15.01 0.00 38.47 5.14
205 206 1.205820 GACGAAAAAGCCGAACGGG 59.794 57.895 15.01 0.00 39.58 5.28
206 207 1.205820 GGACGAAAAAGCCGAACGG 59.794 57.895 9.00 9.00 38.57 4.44
207 208 0.110823 CAGGACGAAAAAGCCGAACG 60.111 55.000 0.00 0.00 0.00 3.95
208 209 0.942252 ACAGGACGAAAAAGCCGAAC 59.058 50.000 0.00 0.00 0.00 3.95
209 210 1.670791 AACAGGACGAAAAAGCCGAA 58.329 45.000 0.00 0.00 0.00 4.30
210 211 1.670791 AAACAGGACGAAAAAGCCGA 58.329 45.000 0.00 0.00 0.00 5.54
211 212 2.485266 AAAACAGGACGAAAAAGCCG 57.515 45.000 0.00 0.00 0.00 5.52
254 255 9.480053 CATGTTGATAGGTTTTGATGAACTTTT 57.520 29.630 0.00 0.00 0.00 2.27
255 256 8.090214 CCATGTTGATAGGTTTTGATGAACTTT 58.910 33.333 0.00 0.00 0.00 2.66
256 257 7.309990 CCCATGTTGATAGGTTTTGATGAACTT 60.310 37.037 0.00 0.00 0.00 2.66
257 258 6.153340 CCCATGTTGATAGGTTTTGATGAACT 59.847 38.462 0.00 0.00 0.00 3.01
258 259 6.152661 TCCCATGTTGATAGGTTTTGATGAAC 59.847 38.462 0.00 0.00 0.00 3.18
259 260 6.252233 TCCCATGTTGATAGGTTTTGATGAA 58.748 36.000 0.00 0.00 0.00 2.57
260 261 5.825532 TCCCATGTTGATAGGTTTTGATGA 58.174 37.500 0.00 0.00 0.00 2.92
261 262 6.097270 ACATCCCATGTTGATAGGTTTTGATG 59.903 38.462 0.00 0.00 41.63 3.07
262 263 6.197168 ACATCCCATGTTGATAGGTTTTGAT 58.803 36.000 0.00 0.00 41.63 2.57
263 264 5.579047 ACATCCCATGTTGATAGGTTTTGA 58.421 37.500 0.00 0.00 41.63 2.69
264 265 5.920193 ACATCCCATGTTGATAGGTTTTG 57.080 39.130 0.00 0.00 41.63 2.44
265 266 6.731467 ACTACATCCCATGTTGATAGGTTTT 58.269 36.000 5.29 0.00 41.63 2.43
266 267 6.327386 ACTACATCCCATGTTGATAGGTTT 57.673 37.500 5.29 0.00 41.63 3.27
267 268 5.975988 ACTACATCCCATGTTGATAGGTT 57.024 39.130 5.29 0.00 41.63 3.50
268 269 5.975988 AACTACATCCCATGTTGATAGGT 57.024 39.130 5.29 0.00 41.63 3.08
269 270 6.828273 TCAAAACTACATCCCATGTTGATAGG 59.172 38.462 5.29 0.00 41.63 2.57
270 271 7.864108 TCAAAACTACATCCCATGTTGATAG 57.136 36.000 5.29 0.00 41.63 2.08
271 272 8.821686 ATTCAAAACTACATCCCATGTTGATA 57.178 30.769 5.29 0.00 41.63 2.15
272 273 7.722949 ATTCAAAACTACATCCCATGTTGAT 57.277 32.000 5.29 0.00 41.63 2.57
273 274 8.821686 ATATTCAAAACTACATCCCATGTTGA 57.178 30.769 5.29 0.00 41.63 3.18
274 275 8.906867 AGATATTCAAAACTACATCCCATGTTG 58.093 33.333 0.00 0.00 41.63 3.33
275 276 9.125026 GAGATATTCAAAACTACATCCCATGTT 57.875 33.333 0.00 0.00 41.63 2.71
276 277 7.442364 CGAGATATTCAAAACTACATCCCATGT 59.558 37.037 0.00 0.00 46.92 3.21
277 278 7.657354 TCGAGATATTCAAAACTACATCCCATG 59.343 37.037 0.00 0.00 0.00 3.66
278 279 7.657761 GTCGAGATATTCAAAACTACATCCCAT 59.342 37.037 0.00 0.00 0.00 4.00
279 280 6.984474 GTCGAGATATTCAAAACTACATCCCA 59.016 38.462 0.00 0.00 0.00 4.37
280 281 6.144080 CGTCGAGATATTCAAAACTACATCCC 59.856 42.308 0.00 0.00 0.00 3.85
281 282 6.345882 GCGTCGAGATATTCAAAACTACATCC 60.346 42.308 0.00 0.00 0.00 3.51
282 283 6.573358 GCGTCGAGATATTCAAAACTACATC 58.427 40.000 0.00 0.00 0.00 3.06
283 284 5.173312 CGCGTCGAGATATTCAAAACTACAT 59.827 40.000 0.00 0.00 0.00 2.29
284 285 4.497966 CGCGTCGAGATATTCAAAACTACA 59.502 41.667 0.00 0.00 0.00 2.74
285 286 4.731961 TCGCGTCGAGATATTCAAAACTAC 59.268 41.667 5.77 0.00 0.00 2.73
286 287 4.912214 TCGCGTCGAGATATTCAAAACTA 58.088 39.130 5.77 0.00 0.00 2.24
287 288 3.766151 TCGCGTCGAGATATTCAAAACT 58.234 40.909 5.77 0.00 0.00 2.66
300 301 1.068832 CGTTGAATTCCTCGCGTCGA 61.069 55.000 5.77 0.00 0.00 4.20
301 302 1.068832 TCGTTGAATTCCTCGCGTCG 61.069 55.000 5.77 0.00 0.00 5.12
302 303 1.005975 CATCGTTGAATTCCTCGCGTC 60.006 52.381 5.77 0.00 0.00 5.19
303 304 0.999406 CATCGTTGAATTCCTCGCGT 59.001 50.000 5.77 0.00 0.00 6.01
304 305 1.277326 TCATCGTTGAATTCCTCGCG 58.723 50.000 0.00 0.00 0.00 5.87
305 306 3.740044 TTTCATCGTTGAATTCCTCGC 57.260 42.857 9.61 0.00 41.38 5.03
306 307 4.081761 CGTTTTCATCGTTGAATTCCTCG 58.918 43.478 9.61 7.91 41.38 4.63
307 308 4.083484 ACCGTTTTCATCGTTGAATTCCTC 60.083 41.667 9.61 0.00 41.38 3.71
308 309 3.818773 ACCGTTTTCATCGTTGAATTCCT 59.181 39.130 9.61 0.00 41.38 3.36
309 310 4.155310 ACCGTTTTCATCGTTGAATTCC 57.845 40.909 9.61 1.18 41.38 3.01
310 311 5.209240 TGAACCGTTTTCATCGTTGAATTC 58.791 37.500 9.61 10.13 41.38 2.17
311 312 5.176407 TGAACCGTTTTCATCGTTGAATT 57.824 34.783 9.61 1.32 41.38 2.17
312 313 4.822036 TGAACCGTTTTCATCGTTGAAT 57.178 36.364 9.61 0.00 41.38 2.57
313 314 4.333095 TCTTGAACCGTTTTCATCGTTGAA 59.667 37.500 4.80 4.80 40.09 2.69
314 315 3.872182 TCTTGAACCGTTTTCATCGTTGA 59.128 39.130 0.00 0.00 0.00 3.18
315 316 4.203950 TCTTGAACCGTTTTCATCGTTG 57.796 40.909 0.00 0.00 0.00 4.10
316 317 5.432885 AATCTTGAACCGTTTTCATCGTT 57.567 34.783 0.00 0.00 0.00 3.85
317 318 5.008217 TCAAATCTTGAACCGTTTTCATCGT 59.992 36.000 0.00 0.00 36.59 3.73
318 319 5.448438 TCAAATCTTGAACCGTTTTCATCG 58.552 37.500 0.00 0.00 36.59 3.84
330 331 4.630894 AACTGTGCGTTCAAATCTTGAA 57.369 36.364 0.00 0.00 46.68 2.69
331 332 4.630894 AAACTGTGCGTTCAAATCTTGA 57.369 36.364 0.00 0.00 38.04 3.02
332 333 6.804534 TTTAAACTGTGCGTTCAAATCTTG 57.195 33.333 0.00 0.00 33.90 3.02
333 334 7.820044 TTTTTAAACTGTGCGTTCAAATCTT 57.180 28.000 0.00 0.00 33.90 2.40
363 364 9.590451 TCTCGTAGATCCGTTTATTTAAAACAT 57.410 29.630 0.00 0.00 33.89 2.71
364 365 8.984891 TCTCGTAGATCCGTTTATTTAAAACA 57.015 30.769 0.00 0.00 33.89 2.83
369 370 9.090692 CCTTTTTCTCGTAGATCCGTTTATTTA 57.909 33.333 0.00 0.00 33.89 1.40
370 371 7.820872 TCCTTTTTCTCGTAGATCCGTTTATTT 59.179 33.333 0.00 0.00 33.89 1.40
371 372 7.325694 TCCTTTTTCTCGTAGATCCGTTTATT 58.674 34.615 0.00 0.00 33.89 1.40
372 373 6.870769 TCCTTTTTCTCGTAGATCCGTTTAT 58.129 36.000 0.00 0.00 33.89 1.40
373 374 6.271488 TCCTTTTTCTCGTAGATCCGTTTA 57.729 37.500 0.00 0.00 33.89 2.01
374 375 5.143376 TCCTTTTTCTCGTAGATCCGTTT 57.857 39.130 0.00 0.00 33.89 3.60
375 376 4.796038 TCCTTTTTCTCGTAGATCCGTT 57.204 40.909 0.00 0.00 33.89 4.44
376 377 4.796038 TTCCTTTTTCTCGTAGATCCGT 57.204 40.909 0.00 0.00 33.89 4.69
377 378 5.638234 AGTTTTCCTTTTTCTCGTAGATCCG 59.362 40.000 0.00 0.00 33.89 4.18
378 379 6.092396 GGAGTTTTCCTTTTTCTCGTAGATCC 59.908 42.308 0.00 0.00 40.58 3.36
379 380 7.062906 GGAGTTTTCCTTTTTCTCGTAGATC 57.937 40.000 0.00 0.00 40.58 2.75
394 395 0.591659 GTCGCAACCAGGAGTTTTCC 59.408 55.000 0.00 0.00 44.39 3.13
395 396 1.305201 TGTCGCAACCAGGAGTTTTC 58.695 50.000 0.00 0.00 36.18 2.29
396 397 1.676006 CTTGTCGCAACCAGGAGTTTT 59.324 47.619 0.00 0.00 36.18 2.43
397 398 1.308998 CTTGTCGCAACCAGGAGTTT 58.691 50.000 0.00 0.00 36.18 2.66
398 399 0.180406 ACTTGTCGCAACCAGGAGTT 59.820 50.000 0.00 0.00 40.16 3.01
399 400 0.532862 CACTTGTCGCAACCAGGAGT 60.533 55.000 0.00 0.00 0.00 3.85
400 401 1.230635 CCACTTGTCGCAACCAGGAG 61.231 60.000 0.00 0.00 0.00 3.69
401 402 1.227823 CCACTTGTCGCAACCAGGA 60.228 57.895 0.00 0.00 0.00 3.86
402 403 2.908073 GCCACTTGTCGCAACCAGG 61.908 63.158 0.00 0.00 0.00 4.45
403 404 2.639286 GCCACTTGTCGCAACCAG 59.361 61.111 0.00 0.00 0.00 4.00
404 405 3.276091 CGCCACTTGTCGCAACCA 61.276 61.111 0.00 0.00 0.00 3.67
410 411 2.174107 CATGTGCGCCACTTGTCG 59.826 61.111 4.18 0.00 35.64 4.35
411 412 2.126734 GCATGTGCGCCACTTGTC 60.127 61.111 4.18 5.08 40.25 3.18
412 413 2.906388 TGCATGTGCGCCACTTGT 60.906 55.556 4.18 0.00 45.83 3.16
413 414 2.126618 CTGCATGTGCGCCACTTG 60.127 61.111 4.18 12.50 45.83 3.16
414 415 4.047059 GCTGCATGTGCGCCACTT 62.047 61.111 4.18 0.00 45.83 3.16
427 428 3.279116 TGACAAGTGGCGTGCTGC 61.279 61.111 0.00 0.00 45.38 5.25
428 429 1.713937 TTGTGACAAGTGGCGTGCTG 61.714 55.000 0.00 0.00 0.00 4.41
429 430 1.451207 TTGTGACAAGTGGCGTGCT 60.451 52.632 0.00 0.00 0.00 4.40
430 431 1.298339 GTTGTGACAAGTGGCGTGC 60.298 57.895 0.00 0.00 0.00 5.34
431 432 1.095228 AGGTTGTGACAAGTGGCGTG 61.095 55.000 0.00 0.00 0.00 5.34
432 433 1.095228 CAGGTTGTGACAAGTGGCGT 61.095 55.000 0.00 0.00 0.00 5.68
433 434 1.648720 CAGGTTGTGACAAGTGGCG 59.351 57.895 0.00 0.00 0.00 5.69
434 435 1.455383 CCCAGGTTGTGACAAGTGGC 61.455 60.000 17.33 0.00 0.00 5.01
435 436 0.182537 TCCCAGGTTGTGACAAGTGG 59.817 55.000 16.26 16.26 0.00 4.00
436 437 1.949525 CTTCCCAGGTTGTGACAAGTG 59.050 52.381 0.00 0.00 0.00 3.16
437 438 1.843851 TCTTCCCAGGTTGTGACAAGT 59.156 47.619 0.00 0.00 0.00 3.16
438 439 2.638480 TCTTCCCAGGTTGTGACAAG 57.362 50.000 0.00 0.00 0.00 3.16
439 440 2.488891 CCATCTTCCCAGGTTGTGACAA 60.489 50.000 0.00 0.00 0.00 3.18
440 441 1.073763 CCATCTTCCCAGGTTGTGACA 59.926 52.381 0.00 0.00 0.00 3.58
441 442 1.614317 CCCATCTTCCCAGGTTGTGAC 60.614 57.143 0.00 0.00 0.00 3.67
442 443 0.698238 CCCATCTTCCCAGGTTGTGA 59.302 55.000 0.00 0.00 0.00 3.58
443 444 0.323725 CCCCATCTTCCCAGGTTGTG 60.324 60.000 0.00 0.00 0.00 3.33
444 445 0.776080 ACCCCATCTTCCCAGGTTGT 60.776 55.000 0.00 0.00 0.00 3.32
445 446 0.323725 CACCCCATCTTCCCAGGTTG 60.324 60.000 0.00 0.00 0.00 3.77
446 447 0.477597 TCACCCCATCTTCCCAGGTT 60.478 55.000 0.00 0.00 0.00 3.50
447 448 0.253820 ATCACCCCATCTTCCCAGGT 60.254 55.000 0.00 0.00 0.00 4.00
448 449 0.475906 GATCACCCCATCTTCCCAGG 59.524 60.000 0.00 0.00 0.00 4.45
449 450 1.516110 AGATCACCCCATCTTCCCAG 58.484 55.000 0.00 0.00 27.71 4.45
450 451 1.985622 AAGATCACCCCATCTTCCCA 58.014 50.000 0.00 0.00 38.53 4.37
451 452 2.659428 CAAAGATCACCCCATCTTCCC 58.341 52.381 0.00 0.00 41.45 3.97
452 453 2.027385 GCAAAGATCACCCCATCTTCC 58.973 52.381 0.00 0.00 41.45 3.46
453 454 2.726821 TGCAAAGATCACCCCATCTTC 58.273 47.619 0.00 0.00 41.45 2.87
454 455 2.827921 GTTGCAAAGATCACCCCATCTT 59.172 45.455 0.00 0.00 43.70 2.40
455 456 2.450476 GTTGCAAAGATCACCCCATCT 58.550 47.619 0.00 0.00 34.34 2.90
456 457 1.133025 CGTTGCAAAGATCACCCCATC 59.867 52.381 6.52 0.00 0.00 3.51
457 458 1.176527 CGTTGCAAAGATCACCCCAT 58.823 50.000 6.52 0.00 0.00 4.00
458 459 0.109532 TCGTTGCAAAGATCACCCCA 59.890 50.000 11.22 0.00 0.00 4.96
459 460 0.804989 CTCGTTGCAAAGATCACCCC 59.195 55.000 15.52 0.00 0.00 4.95
460 461 1.523758 ACTCGTTGCAAAGATCACCC 58.476 50.000 15.52 0.00 0.00 4.61
461 462 3.326747 AGTACTCGTTGCAAAGATCACC 58.673 45.455 15.52 4.77 0.00 4.02
462 463 3.368236 GGAGTACTCGTTGCAAAGATCAC 59.632 47.826 15.52 14.91 0.00 3.06
463 464 3.258372 AGGAGTACTCGTTGCAAAGATCA 59.742 43.478 15.52 3.95 0.00 2.92
464 465 3.851098 AGGAGTACTCGTTGCAAAGATC 58.149 45.455 15.52 9.90 0.00 2.75
465 466 3.963428 AGGAGTACTCGTTGCAAAGAT 57.037 42.857 15.52 8.63 0.00 2.40
466 467 3.746045 AAGGAGTACTCGTTGCAAAGA 57.254 42.857 25.72 14.45 36.47 2.52
467 468 4.608445 CGAAAAGGAGTACTCGTTGCAAAG 60.608 45.833 26.70 14.91 37.69 2.77
468 469 3.246699 CGAAAAGGAGTACTCGTTGCAAA 59.753 43.478 26.70 0.00 37.69 3.68
469 470 2.798283 CGAAAAGGAGTACTCGTTGCAA 59.202 45.455 26.70 0.00 37.69 4.08
470 471 2.400399 CGAAAAGGAGTACTCGTTGCA 58.600 47.619 26.70 0.00 37.69 4.08
471 472 1.126296 GCGAAAAGGAGTACTCGTTGC 59.874 52.381 26.70 21.84 37.69 4.17
472 473 2.400399 TGCGAAAAGGAGTACTCGTTG 58.600 47.619 26.70 17.24 37.69 4.10
473 474 2.806608 TGCGAAAAGGAGTACTCGTT 57.193 45.000 22.01 22.01 39.10 3.85
474 475 2.673833 CTTGCGAAAAGGAGTACTCGT 58.326 47.619 16.56 14.43 33.87 4.18
475 476 1.390463 GCTTGCGAAAAGGAGTACTCG 59.610 52.381 16.56 6.20 0.00 4.18
476 477 2.413453 CTGCTTGCGAAAAGGAGTACTC 59.587 50.000 14.87 14.87 32.03 2.59
477 478 2.224305 ACTGCTTGCGAAAAGGAGTACT 60.224 45.455 19.21 0.00 45.20 2.73
478 479 2.143925 ACTGCTTGCGAAAAGGAGTAC 58.856 47.619 19.21 0.00 45.20 2.73
479 480 2.543777 ACTGCTTGCGAAAAGGAGTA 57.456 45.000 19.21 0.00 45.20 2.59
480 481 3.403936 ACTGCTTGCGAAAAGGAGT 57.596 47.368 16.28 16.28 42.84 3.85
481 482 4.425577 AATTACTGCTTGCGAAAAGGAG 57.574 40.909 15.21 15.21 40.88 3.69
482 483 4.757657 TGTAATTACTGCTTGCGAAAAGGA 59.242 37.500 16.33 0.00 0.00 3.36
483 484 4.851558 GTGTAATTACTGCTTGCGAAAAGG 59.148 41.667 16.33 0.00 0.00 3.11
484 485 5.448438 TGTGTAATTACTGCTTGCGAAAAG 58.552 37.500 16.33 0.00 0.00 2.27
485 486 5.425577 TGTGTAATTACTGCTTGCGAAAA 57.574 34.783 16.33 0.00 0.00 2.29
486 487 5.425577 TTGTGTAATTACTGCTTGCGAAA 57.574 34.783 16.33 0.00 0.00 3.46
487 488 5.621197 ATTGTGTAATTACTGCTTGCGAA 57.379 34.783 16.33 1.45 0.00 4.70
488 489 6.918892 ATATTGTGTAATTACTGCTTGCGA 57.081 33.333 16.33 1.56 0.00 5.10
489 490 8.282592 ACATATATTGTGTAATTACTGCTTGCG 58.717 33.333 16.33 1.43 37.11 4.85
494 495 9.436957 AGCCTACATATATTGTGTAATTACTGC 57.563 33.333 16.33 9.80 39.48 4.40
512 513 3.070015 GCCCATTTGCATTAAGCCTACAT 59.930 43.478 0.00 0.00 44.83 2.29
631 632 1.539388 CAATCGTGGGTGCTTGCTTTA 59.461 47.619 0.00 0.00 0.00 1.85
633 634 1.959085 CAATCGTGGGTGCTTGCTT 59.041 52.632 0.00 0.00 0.00 3.91
634 635 2.629656 GCAATCGTGGGTGCTTGCT 61.630 57.895 0.00 0.00 40.55 3.91
635 636 2.126346 GCAATCGTGGGTGCTTGC 60.126 61.111 0.00 0.00 37.78 4.01
636 637 1.926511 GAGGCAATCGTGGGTGCTTG 61.927 60.000 0.00 0.00 40.70 4.01
758 771 3.311110 GAGACACCCAGACGCCCA 61.311 66.667 0.00 0.00 0.00 5.36
907 929 0.173481 CCAGAGTTGAGATCGCGGAA 59.827 55.000 6.13 0.00 0.00 4.30
935 957 4.858935 AGTGAACCGAACATTGACATTTG 58.141 39.130 0.00 0.00 0.00 2.32
1096 1121 0.109723 GTGTAGCCCTCCACCACAAA 59.890 55.000 0.00 0.00 0.00 2.83
1114 1139 3.058224 GGTAGCATCTCTTTTGTTTGCGT 60.058 43.478 0.00 0.00 38.32 5.24
1132 1157 2.800736 GCGCTTGCCATTGGGTAG 59.199 61.111 0.00 0.00 36.17 3.18
1151 1176 1.766143 GACGAATGGGCGAGACATGC 61.766 60.000 0.00 0.00 34.83 4.06
1226 1251 0.321653 GAGGGAAACACAGTCGGCAT 60.322 55.000 0.00 0.00 0.00 4.40
1287 1318 0.179051 AACTAAACCCGAACCGCACA 60.179 50.000 0.00 0.00 0.00 4.57
1340 1371 3.482110 GTGTGTTTGAGTTTCACGAATGC 59.518 43.478 0.00 0.00 35.20 3.56
1373 1404 4.322049 CGAAGCCCCTAATAGAATCATCGT 60.322 45.833 0.00 0.00 0.00 3.73
1428 1459 2.783135 TCACCCTTGAGATGCTTTGAC 58.217 47.619 0.00 0.00 0.00 3.18
1530 4643 3.419915 GTTCAAATGCTGCTGTATGTCG 58.580 45.455 0.00 0.00 0.00 4.35
1710 4826 4.147321 ACACATTTGCTTCCATGTCTTCT 58.853 39.130 0.00 0.00 30.90 2.85
1774 4890 3.715315 TCTGCCTCATGATTCTCCATCTT 59.285 43.478 0.00 0.00 32.34 2.40
1786 4902 3.134262 TCTTCCTCATCTTCTGCCTCATG 59.866 47.826 0.00 0.00 0.00 3.07
1799 4945 6.487828 TCATCCAATTCTTGTTCTTCCTCAT 58.512 36.000 0.00 0.00 0.00 2.90
1816 4962 4.194640 GCTGCATAGACTTCTTCATCCAA 58.805 43.478 0.00 0.00 0.00 3.53
2008 5157 3.334583 TTGGACTCCGAGGAAATTCAG 57.665 47.619 0.00 0.00 0.00 3.02
2020 5169 3.662071 GGAGGGGGATTGGACTCC 58.338 66.667 0.00 0.00 42.31 3.85
2170 5321 0.239347 ACAAACTACGACCGGTCTCG 59.761 55.000 30.92 22.33 39.68 4.04
2213 5364 2.228138 TTTACTCCACGACCACACAC 57.772 50.000 0.00 0.00 0.00 3.82
2218 5416 4.020573 ACAAGATCATTTACTCCACGACCA 60.021 41.667 0.00 0.00 0.00 4.02
2219 5417 4.504858 ACAAGATCATTTACTCCACGACC 58.495 43.478 0.00 0.00 0.00 4.79
2220 5418 7.331193 AGTTTACAAGATCATTTACTCCACGAC 59.669 37.037 0.00 0.00 0.00 4.34
2221 5419 7.383687 AGTTTACAAGATCATTTACTCCACGA 58.616 34.615 0.00 0.00 0.00 4.35
2222 5420 7.596749 AGTTTACAAGATCATTTACTCCACG 57.403 36.000 0.00 0.00 0.00 4.94
2224 5422 9.667107 CCTAAGTTTACAAGATCATTTACTCCA 57.333 33.333 0.00 0.00 0.00 3.86
2225 5423 9.668497 ACCTAAGTTTACAAGATCATTTACTCC 57.332 33.333 0.00 0.00 0.00 3.85
2245 5443 9.862371 AGATCAATATTGACGCTTATACCTAAG 57.138 33.333 20.19 0.00 40.49 2.18
2349 5656 8.107729 TCAGAAAACATCTAGAGGTAGTAGACA 58.892 37.037 10.98 0.00 36.32 3.41
2350 5657 8.508883 TCAGAAAACATCTAGAGGTAGTAGAC 57.491 38.462 10.98 0.52 36.32 2.59
2372 5681 2.220824 TCGACGTTCACTGCATTTTCAG 59.779 45.455 0.00 0.00 39.86 3.02
2379 5688 1.269569 ACTGAATCGACGTTCACTGCA 60.270 47.619 8.23 0.00 34.58 4.41
2384 5693 6.772770 TTATTTGAACTGAATCGACGTTCA 57.227 33.333 13.88 13.88 43.56 3.18
2405 5714 6.459066 CAGAGATCTTGGTGACTCTGTTTTA 58.541 40.000 0.00 0.00 46.15 1.52
2425 5734 2.237143 TCCAGGATTGCTGTAACCAGAG 59.763 50.000 4.39 0.00 41.50 3.35
2466 5775 0.547712 TAGGCAGAGGGGAAGCTTGT 60.548 55.000 2.10 0.00 0.00 3.16
2508 5817 1.144936 GACCTCTCCTTCCATGGCG 59.855 63.158 6.96 0.00 0.00 5.69
2520 5829 2.957402 TTTGTGGAATGCTGACCTCT 57.043 45.000 0.00 0.00 0.00 3.69
2535 5844 0.881118 GGGCACGACACATCATTTGT 59.119 50.000 0.00 0.00 39.91 2.83
2536 5845 1.131126 GAGGGCACGACACATCATTTG 59.869 52.381 0.00 0.00 0.00 2.32
2537 5846 1.003580 AGAGGGCACGACACATCATTT 59.996 47.619 0.00 0.00 0.00 2.32
2538 5847 0.615331 AGAGGGCACGACACATCATT 59.385 50.000 0.00 0.00 0.00 2.57
2539 5848 1.137086 GTAGAGGGCACGACACATCAT 59.863 52.381 0.00 0.00 0.00 2.45
2540 5849 0.530744 GTAGAGGGCACGACACATCA 59.469 55.000 0.00 0.00 0.00 3.07
2541 5850 0.818296 AGTAGAGGGCACGACACATC 59.182 55.000 0.00 0.00 0.00 3.06
2542 5851 2.139323 TAGTAGAGGGCACGACACAT 57.861 50.000 0.00 0.00 0.00 3.21
2543 5852 1.913778 TTAGTAGAGGGCACGACACA 58.086 50.000 0.00 0.00 0.00 3.72
2544 5853 3.308438 TTTTAGTAGAGGGCACGACAC 57.692 47.619 0.00 0.00 0.00 3.67
2566 5875 0.690762 ACACCAGGCCGAAAGTATGT 59.309 50.000 0.00 0.00 0.00 2.29
2567 5876 2.684001 TACACCAGGCCGAAAGTATG 57.316 50.000 0.00 0.00 0.00 2.39
2568 5877 3.926058 AATACACCAGGCCGAAAGTAT 57.074 42.857 0.00 2.51 0.00 2.12
2569 5878 3.706600 AAATACACCAGGCCGAAAGTA 57.293 42.857 0.00 0.00 0.00 2.24
2578 5887 3.411446 TGTGCTCTCAAAATACACCAGG 58.589 45.455 0.00 0.00 0.00 4.45
2591 5900 4.439968 TGACATCAATCATCTGTGCTCTC 58.560 43.478 0.00 0.00 0.00 3.20
2605 5914 8.040132 AGTTTTTCCAGACAAAATTGACATCAA 58.960 29.630 0.00 0.00 40.51 2.57
2667 5976 6.944862 GGTGATAAAGGCCAGATGAGAAATAT 59.055 38.462 5.01 0.00 0.00 1.28
2693 6002 6.656632 TCAAGAACATAGAAGGATCGCTAT 57.343 37.500 0.00 0.00 0.00 2.97
2708 6017 8.822805 AGTATGGTTATTCCTAGTTCAAGAACA 58.177 33.333 14.69 1.34 39.22 3.18
2733 6042 9.251792 CATCTCTGAAGAACATAGAAAGATCAG 57.748 37.037 0.00 0.00 35.82 2.90
2734 6043 8.202811 CCATCTCTGAAGAACATAGAAAGATCA 58.797 37.037 0.00 0.00 35.82 2.92
2845 6156 8.484214 ACTGTCAGTGTATGATCCTAACATAT 57.516 34.615 4.21 0.00 40.92 1.78
2846 6157 7.898014 ACTGTCAGTGTATGATCCTAACATA 57.102 36.000 4.21 0.00 40.92 2.29
2847 6158 6.798427 ACTGTCAGTGTATGATCCTAACAT 57.202 37.500 4.21 0.00 40.92 2.71
2848 6159 6.605471 AACTGTCAGTGTATGATCCTAACA 57.395 37.500 6.18 0.00 40.92 2.41
2897 6208 6.570378 GCACCAAAATAAGTACATGAGCTTGT 60.570 38.462 0.00 0.00 0.00 3.16
2909 6220 4.797275 GCAAGCAGAAGCACCAAAATAAGT 60.797 41.667 0.00 0.00 45.49 2.24
2971 6282 7.918076 TGGATCCAAGAGAAACTACTTTACAT 58.082 34.615 13.46 0.00 0.00 2.29
2973 6284 8.617290 TTTGGATCCAAGAGAAACTACTTTAC 57.383 34.615 25.69 0.00 37.24 2.01
2978 6289 4.093556 CGCTTTGGATCCAAGAGAAACTAC 59.906 45.833 25.69 11.51 37.24 2.73
3019 6330 0.878961 ACGAGACGGACTTTGGTTGC 60.879 55.000 0.00 0.00 0.00 4.17
3032 6343 4.495422 ACATGATGGTCAAGTAACGAGAC 58.505 43.478 0.00 0.00 0.00 3.36
3037 6348 4.832248 TCAGGACATGATGGTCAAGTAAC 58.168 43.478 0.00 0.00 39.59 2.50
3071 6382 9.553064 AATACAGCCACAATAATTTGTTTTTCA 57.447 25.926 0.00 0.00 43.57 2.69
3075 6386 9.153721 CATGAATACAGCCACAATAATTTGTTT 57.846 29.630 0.00 0.00 43.57 2.83
3078 6389 7.267128 ACCATGAATACAGCCACAATAATTTG 58.733 34.615 0.00 0.00 38.86 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.