Multiple sequence alignment - TraesCS1A01G078600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G078600 chr1A 100.000 3114 0 0 1 3114 61340166 61343279 0.000000e+00 5751.0
1 TraesCS1A01G078600 chr1A 92.987 1540 95 5 1284 2815 61284463 61285997 0.000000e+00 2233.0
2 TraesCS1A01G078600 chr1A 93.298 1328 77 5 1284 2604 61032600 61033922 0.000000e+00 1949.0
3 TraesCS1A01G078600 chr1A 85.366 984 122 18 1287 2255 62254266 62253290 0.000000e+00 1000.0
4 TraesCS1A01G078600 chr1A 89.302 673 40 7 2149 2815 61158378 61159024 0.000000e+00 815.0
5 TraesCS1A01G078600 chr1A 96.350 411 13 2 342 751 372627463 372627872 0.000000e+00 675.0
6 TraesCS1A01G078600 chr1A 95.433 416 14 4 342 753 513706703 513706289 0.000000e+00 658.0
7 TraesCS1A01G078600 chr1A 87.751 498 35 8 784 1255 61032034 61032531 2.710000e-155 558.0
8 TraesCS1A01G078600 chr1A 89.273 289 26 4 2277 2564 61252496 61252780 1.060000e-94 357.0
9 TraesCS1A01G078600 chr1A 88.927 289 27 4 2277 2564 61023279 61023563 4.940000e-93 351.0
10 TraesCS1A01G078600 chr1A 91.593 226 19 0 2590 2815 61033937 61034162 2.330000e-81 313.0
11 TraesCS1A01G078600 chr1A 90.511 137 13 0 1 137 61193962 61194098 6.860000e-42 182.0
12 TraesCS1A01G078600 chr1A 87.342 158 12 3 784 933 61269862 61270019 1.150000e-39 174.0
13 TraesCS1A01G078600 chr1A 90.152 132 12 1 7 137 61380428 61380559 1.480000e-38 171.0
14 TraesCS1A01G078600 chr1A 85.938 128 15 2 9 135 61260792 61260917 1.950000e-27 134.0
15 TraesCS1A01G078600 chr1A 91.304 46 3 1 2210 2255 62249724 62249680 9.320000e-06 62.1
16 TraesCS1A01G078600 chr1D 91.452 1743 88 26 784 2470 62935516 62937253 0.000000e+00 2337.0
17 TraesCS1A01G078600 chr1D 83.727 1481 196 37 801 2255 63356853 63358314 0.000000e+00 1358.0
18 TraesCS1A01G078600 chr1D 83.049 1115 169 13 1019 2121 62889869 62890975 0.000000e+00 994.0
19 TraesCS1A01G078600 chr1D 82.609 368 46 11 2278 2638 62930959 62931315 3.020000e-80 309.0
20 TraesCS1A01G078600 chr1D 90.110 182 10 2 2642 2815 62953021 62953202 2.420000e-56 230.0
21 TraesCS1A01G078600 chr1D 93.893 131 8 0 7 137 62939645 62939775 6.810000e-47 198.0
22 TraesCS1A01G078600 chr1D 91.200 125 7 2 2462 2585 62938682 62938803 1.920000e-37 167.0
23 TraesCS1A01G078600 chr1D 87.786 131 16 0 7 137 63019404 63019534 1.500000e-33 154.0
24 TraesCS1A01G078600 chr1B 89.973 1496 118 26 784 2257 100630815 100632300 0.000000e+00 1903.0
25 TraesCS1A01G078600 chr1B 93.420 1155 64 7 1288 2433 100541761 100542912 0.000000e+00 1701.0
26 TraesCS1A01G078600 chr1B 83.378 1486 203 34 801 2255 101142773 101144245 0.000000e+00 1336.0
27 TraesCS1A01G078600 chr1B 92.179 537 31 5 2274 2807 100645748 100646276 0.000000e+00 749.0
28 TraesCS1A01G078600 chr1B 90.055 362 20 5 2427 2783 100553411 100553761 3.660000e-124 455.0
29 TraesCS1A01G078600 chr1B 90.258 349 28 4 913 1255 100541340 100541688 4.740000e-123 451.0
30 TraesCS1A01G078600 chr1B 93.506 154 9 1 2962 3114 279497570 279497417 8.690000e-56 228.0
31 TraesCS1A01G078600 chr1B 92.208 154 11 1 2962 3114 667239822 667239975 1.880000e-52 217.0
32 TraesCS1A01G078600 chr1B 88.806 134 10 4 7 137 100647256 100647387 3.210000e-35 159.0
33 TraesCS1A01G078600 chr1B 88.281 128 15 0 8 135 100538770 100538897 1.500000e-33 154.0
34 TraesCS1A01G078600 chr6A 97.573 412 9 1 342 752 417634066 417634477 0.000000e+00 704.0
35 TraesCS1A01G078600 chr6A 96.154 416 15 1 342 757 595713584 595713998 0.000000e+00 678.0
36 TraesCS1A01G078600 chr6A 79.433 141 25 2 2817 2954 420588138 420588277 2.560000e-16 97.1
37 TraesCS1A01G078600 chr5A 96.845 412 10 2 342 752 536878116 536877707 0.000000e+00 686.0
38 TraesCS1A01G078600 chr5A 97.315 149 4 0 138 286 528271646 528271498 1.430000e-63 254.0
39 TraesCS1A01G078600 chr5A 82.639 144 21 2 2814 2954 384423392 384423534 1.170000e-24 124.0
40 TraesCS1A01G078600 chrUn 96.594 411 13 1 342 752 71738766 71739175 0.000000e+00 680.0
41 TraesCS1A01G078600 chr7A 95.642 413 16 2 342 753 521905080 521905491 0.000000e+00 662.0
42 TraesCS1A01G078600 chr7A 87.640 89 11 0 2814 2902 655419823 655419911 1.530000e-18 104.0
43 TraesCS1A01G078600 chr3A 95.157 413 17 3 342 752 719350294 719350705 0.000000e+00 649.0
44 TraesCS1A01G078600 chr3A 94.417 412 21 2 342 753 449662400 449661991 1.580000e-177 632.0
45 TraesCS1A01G078600 chr2A 91.083 314 22 4 2807 3114 735296678 735296991 1.340000e-113 420.0
46 TraesCS1A01G078600 chr5D 96.644 149 5 0 138 286 541998868 541999016 6.670000e-62 248.0
47 TraesCS1A01G078600 chr5D 91.333 150 13 0 136 285 27097559 27097410 4.070000e-49 206.0
48 TraesCS1A01G078600 chr7D 95.425 153 7 0 138 290 118376485 118376637 8.630000e-61 244.0
49 TraesCS1A01G078600 chr7D 87.662 154 10 2 2962 3114 519693372 519693517 1.480000e-38 171.0
50 TraesCS1A01G078600 chr7D 79.861 144 25 4 2811 2951 536337013 536336871 5.490000e-18 102.0
51 TraesCS1A01G078600 chr7B 94.156 154 8 1 2962 3114 452472197 452472044 1.870000e-57 233.0
52 TraesCS1A01G078600 chr6B 92.763 152 10 1 2964 3114 151186911 151187062 5.230000e-53 219.0
53 TraesCS1A01G078600 chr3B 92.208 154 11 1 2962 3114 690388542 690388389 1.880000e-52 217.0
54 TraesCS1A01G078600 chr3B 94.937 79 4 0 212 290 742077481 742077403 1.170000e-24 124.0
55 TraesCS1A01G078600 chr3B 94.937 79 4 0 212 290 742087008 742086930 1.170000e-24 124.0
56 TraesCS1A01G078600 chr3B 96.000 75 3 0 212 286 742057681 742057607 4.220000e-24 122.0
57 TraesCS1A01G078600 chr3B 83.178 107 18 0 2815 2921 778161098 778161204 7.110000e-17 99.0
58 TraesCS1A01G078600 chr4B 94.286 140 7 1 137 276 75755451 75755313 2.430000e-51 213.0
59 TraesCS1A01G078600 chr4B 86.916 107 14 0 2815 2921 14163808 14163914 1.520000e-23 121.0
60 TraesCS1A01G078600 chr6D 96.078 102 4 0 185 286 409845989 409846090 1.920000e-37 167.0
61 TraesCS1A01G078600 chr4D 85.616 146 15 2 2815 2954 477337209 477337064 6.960000e-32 148.0
62 TraesCS1A01G078600 chr3D 85.455 110 16 0 2818 2927 517874592 517874483 7.060000e-22 115.0
63 TraesCS1A01G078600 chr2D 100.000 30 0 0 752 781 624902721 624902750 4.340000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G078600 chr1A 61340166 61343279 3113 False 5751.000000 5751 100.000000 1 3114 1 chr1A.!!$F8 3113
1 TraesCS1A01G078600 chr1A 61284463 61285997 1534 False 2233.000000 2233 92.987000 1284 2815 1 chr1A.!!$F7 1531
2 TraesCS1A01G078600 chr1A 61032034 61034162 2128 False 940.000000 1949 90.880667 784 2815 3 chr1A.!!$F11 2031
3 TraesCS1A01G078600 chr1A 61158378 61159024 646 False 815.000000 815 89.302000 2149 2815 1 chr1A.!!$F2 666
4 TraesCS1A01G078600 chr1A 62249680 62254266 4586 True 531.050000 1000 88.335000 1287 2255 2 chr1A.!!$R2 968
5 TraesCS1A01G078600 chr1D 63356853 63358314 1461 False 1358.000000 1358 83.727000 801 2255 1 chr1D.!!$F5 1454
6 TraesCS1A01G078600 chr1D 62889869 62890975 1106 False 994.000000 994 83.049000 1019 2121 1 chr1D.!!$F1 1102
7 TraesCS1A01G078600 chr1D 62935516 62939775 4259 False 900.666667 2337 92.181667 7 2585 3 chr1D.!!$F6 2578
8 TraesCS1A01G078600 chr1B 100630815 100632300 1485 False 1903.000000 1903 89.973000 784 2257 1 chr1B.!!$F2 1473
9 TraesCS1A01G078600 chr1B 101142773 101144245 1472 False 1336.000000 1336 83.378000 801 2255 1 chr1B.!!$F3 1454
10 TraesCS1A01G078600 chr1B 100538770 100542912 4142 False 768.666667 1701 90.653000 8 2433 3 chr1B.!!$F5 2425
11 TraesCS1A01G078600 chr1B 100645748 100647387 1639 False 454.000000 749 90.492500 7 2807 2 chr1B.!!$F6 2800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 210 0.036105 ATCAGCTCGTCCATGCACAA 60.036 50.0 0.0 0.0 0.0 3.33 F
248 249 0.169009 GCTGGATTTGGCTGTCGTTC 59.831 55.0 0.0 0.0 0.0 3.95 F
602 603 0.452987 CCACGCCTTCCATCAATGTG 59.547 55.0 0.0 0.0 0.0 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1897 3960 0.863144 GCGCCAGTACGTTCTTGAAA 59.137 50.000 0.00 0.0 34.88 2.69 R
1994 4057 2.270205 CTGCCACGCCTTCTCCAT 59.730 61.111 0.00 0.0 0.00 3.41 R
2346 4439 2.892374 AGCGATGTGAATCGTTCATGA 58.108 42.857 9.58 0.0 45.11 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 6.881602 AGTATTGTTTCAGATCTCTTGAACCC 59.118 38.462 0.00 0.00 0.00 4.11
59 60 4.534500 TCTCTTGAACCCCAGTTATGCTTA 59.466 41.667 0.00 0.00 35.94 3.09
63 64 5.702065 TGAACCCCAGTTATGCTTACATA 57.298 39.130 0.00 0.00 37.74 2.29
93 94 4.541973 AACAATTTGCATTCCCTTCTCC 57.458 40.909 0.00 0.00 0.00 3.71
101 102 2.025321 GCATTCCCTTCTCCCTTGGTAA 60.025 50.000 0.00 0.00 0.00 2.85
106 107 3.011257 TCCCTTCTCCCTTGGTAATTTGG 59.989 47.826 0.00 0.00 0.00 3.28
108 109 3.430453 CTTCTCCCTTGGTAATTTGGCA 58.570 45.455 0.00 0.00 0.00 4.92
116 117 2.088423 TGGTAATTTGGCATCCGACAC 58.912 47.619 0.00 0.00 0.00 3.67
119 120 1.750193 AATTTGGCATCCGACACGAT 58.250 45.000 0.00 0.00 0.00 3.73
137 138 3.332421 TGCGTTGCATTGCATGATC 57.668 47.368 12.95 3.26 38.76 2.92
138 139 0.526662 TGCGTTGCATTGCATGATCA 59.473 45.000 12.95 0.00 38.76 2.92
139 140 1.197055 GCGTTGCATTGCATGATCAG 58.803 50.000 12.95 2.17 38.76 2.90
142 143 0.526739 TTGCATTGCATGATCAGCGC 60.527 50.000 12.95 11.95 38.76 5.92
144 145 0.934901 GCATTGCATGATCAGCGCTG 60.935 55.000 31.53 31.53 33.85 5.18
145 146 0.934901 CATTGCATGATCAGCGCTGC 60.935 55.000 32.44 20.74 35.21 5.25
146 147 1.101635 ATTGCATGATCAGCGCTGCT 61.102 50.000 32.44 24.23 40.77 4.24
147 148 0.462403 TTGCATGATCAGCGCTGCTA 60.462 50.000 32.44 20.02 36.40 3.49
148 149 0.250166 TGCATGATCAGCGCTGCTAT 60.250 50.000 32.44 21.52 36.40 2.97
150 151 1.392853 GCATGATCAGCGCTGCTATAC 59.607 52.381 32.44 19.35 36.40 1.47
151 152 2.680577 CATGATCAGCGCTGCTATACA 58.319 47.619 32.44 23.65 36.40 2.29
152 153 2.140065 TGATCAGCGCTGCTATACAC 57.860 50.000 32.44 16.48 36.40 2.90
153 154 1.408702 TGATCAGCGCTGCTATACACA 59.591 47.619 32.44 18.59 36.40 3.72
154 155 1.789464 GATCAGCGCTGCTATACACAC 59.211 52.381 32.44 5.29 36.40 3.82
155 156 0.525455 TCAGCGCTGCTATACACACG 60.525 55.000 32.44 4.42 36.40 4.49
156 157 0.525455 CAGCGCTGCTATACACACGA 60.525 55.000 26.68 0.00 36.40 4.35
157 158 0.385751 AGCGCTGCTATACACACGAT 59.614 50.000 10.39 0.00 36.99 3.73
159 160 1.864029 GCGCTGCTATACACACGATGA 60.864 52.381 0.00 0.00 0.00 2.92
160 161 2.047040 CGCTGCTATACACACGATGAG 58.953 52.381 0.00 0.00 0.00 2.90
161 162 1.789464 GCTGCTATACACACGATGAGC 59.211 52.381 0.00 0.00 0.00 4.26
163 164 1.269051 TGCTATACACACGATGAGCGG 60.269 52.381 0.00 0.00 46.49 5.52
164 165 1.269102 GCTATACACACGATGAGCGGT 60.269 52.381 0.00 0.00 46.49 5.68
165 166 2.385315 CTATACACACGATGAGCGGTG 58.615 52.381 9.48 9.48 46.49 4.94
166 167 0.179111 ATACACACGATGAGCGGTGG 60.179 55.000 14.14 0.00 46.49 4.61
167 168 1.245376 TACACACGATGAGCGGTGGA 61.245 55.000 14.14 4.90 46.49 4.02
169 170 2.880879 CACGATGAGCGGTGGACG 60.881 66.667 0.00 0.00 46.49 4.79
175 176 1.000163 GATGAGCGGTGGACGATATGT 60.000 52.381 0.00 0.00 43.91 2.29
176 177 0.102300 TGAGCGGTGGACGATATGTG 59.898 55.000 0.00 0.00 43.91 3.21
178 179 1.202371 GAGCGGTGGACGATATGTGAA 60.202 52.381 0.00 0.00 43.91 3.18
179 180 3.363431 GAGCGGTGGACGATATGTGAAC 61.363 54.545 0.00 0.00 43.91 3.18
181 182 2.572191 GGTGGACGATATGTGAACGA 57.428 50.000 0.00 0.00 0.00 3.85
182 183 2.190981 GGTGGACGATATGTGAACGAC 58.809 52.381 0.00 0.00 0.00 4.34
183 184 2.416296 GGTGGACGATATGTGAACGACA 60.416 50.000 0.00 0.00 39.53 4.35
184 185 3.247442 GTGGACGATATGTGAACGACAA 58.753 45.455 0.00 0.00 38.36 3.18
185 186 3.863424 GTGGACGATATGTGAACGACAAT 59.137 43.478 0.00 0.00 38.36 2.71
186 187 3.862845 TGGACGATATGTGAACGACAATG 59.137 43.478 0.00 0.00 38.36 2.82
187 188 3.302480 GGACGATATGTGAACGACAATGC 60.302 47.826 0.00 0.00 38.36 3.56
188 189 3.258228 ACGATATGTGAACGACAATGCA 58.742 40.909 0.00 0.00 38.36 3.96
189 190 3.306973 ACGATATGTGAACGACAATGCAG 59.693 43.478 0.00 0.00 38.36 4.41
190 191 3.551485 CGATATGTGAACGACAATGCAGA 59.449 43.478 0.00 0.00 38.36 4.26
191 192 4.209911 CGATATGTGAACGACAATGCAGAT 59.790 41.667 0.00 0.00 38.36 2.90
192 193 5.611197 CGATATGTGAACGACAATGCAGATC 60.611 44.000 0.00 0.00 38.36 2.75
193 194 2.765122 TGTGAACGACAATGCAGATCA 58.235 42.857 0.00 0.00 0.00 2.92
194 195 2.738314 TGTGAACGACAATGCAGATCAG 59.262 45.455 0.00 0.00 0.00 2.90
196 197 2.005451 GAACGACAATGCAGATCAGCT 58.995 47.619 11.68 0.00 34.99 4.24
197 198 1.649664 ACGACAATGCAGATCAGCTC 58.350 50.000 11.68 0.00 34.99 4.09
198 199 0.575859 CGACAATGCAGATCAGCTCG 59.424 55.000 11.68 8.20 34.99 5.03
199 200 1.649664 GACAATGCAGATCAGCTCGT 58.350 50.000 11.68 5.60 34.99 4.18
200 201 1.592081 GACAATGCAGATCAGCTCGTC 59.408 52.381 11.68 10.61 34.99 4.20
201 202 0.935898 CAATGCAGATCAGCTCGTCC 59.064 55.000 11.68 0.00 34.99 4.79
202 203 0.538584 AATGCAGATCAGCTCGTCCA 59.461 50.000 11.68 0.00 34.99 4.02
203 204 0.757512 ATGCAGATCAGCTCGTCCAT 59.242 50.000 11.68 0.00 34.99 3.41
204 205 0.179092 TGCAGATCAGCTCGTCCATG 60.179 55.000 11.68 0.00 34.99 3.66
206 207 0.179092 CAGATCAGCTCGTCCATGCA 60.179 55.000 0.00 0.00 0.00 3.96
207 208 0.179089 AGATCAGCTCGTCCATGCAC 60.179 55.000 0.00 0.00 0.00 4.57
208 209 0.460811 GATCAGCTCGTCCATGCACA 60.461 55.000 0.00 0.00 0.00 4.57
209 210 0.036105 ATCAGCTCGTCCATGCACAA 60.036 50.000 0.00 0.00 0.00 3.33
210 211 0.250252 TCAGCTCGTCCATGCACAAA 60.250 50.000 0.00 0.00 0.00 2.83
211 212 0.592637 CAGCTCGTCCATGCACAAAA 59.407 50.000 0.00 0.00 0.00 2.44
212 213 0.593128 AGCTCGTCCATGCACAAAAC 59.407 50.000 0.00 0.00 0.00 2.43
213 214 0.593128 GCTCGTCCATGCACAAAACT 59.407 50.000 0.00 0.00 0.00 2.66
214 215 1.664016 GCTCGTCCATGCACAAAACTG 60.664 52.381 0.00 0.00 0.00 3.16
216 217 2.290367 CTCGTCCATGCACAAAACTGAA 59.710 45.455 0.00 0.00 0.00 3.02
217 218 2.290367 TCGTCCATGCACAAAACTGAAG 59.710 45.455 0.00 0.00 0.00 3.02
219 220 3.374745 GTCCATGCACAAAACTGAAGTG 58.625 45.455 0.00 0.00 36.39 3.16
221 222 3.698539 TCCATGCACAAAACTGAAGTGAA 59.301 39.130 0.00 0.00 35.33 3.18
222 223 4.046462 CCATGCACAAAACTGAAGTGAAG 58.954 43.478 0.00 0.00 35.33 3.02
223 224 3.149436 TGCACAAAACTGAAGTGAAGC 57.851 42.857 0.00 0.00 35.33 3.86
226 227 3.181497 GCACAAAACTGAAGTGAAGCAGA 60.181 43.478 0.00 0.00 35.33 4.26
229 230 1.871080 AACTGAAGTGAAGCAGACGG 58.129 50.000 0.00 0.00 36.07 4.79
239 240 3.190878 GCAGACGGCTGGATTTGG 58.809 61.111 22.33 0.00 42.53 3.28
240 241 3.056313 GCAGACGGCTGGATTTGGC 62.056 63.158 22.33 0.00 42.53 4.52
241 242 1.377725 CAGACGGCTGGATTTGGCT 60.378 57.895 11.57 0.00 38.51 4.75
242 243 1.377725 AGACGGCTGGATTTGGCTG 60.378 57.895 0.00 0.00 40.32 4.85
243 244 2.436109 ACGGCTGGATTTGGCTGT 59.564 55.556 0.00 0.00 42.39 4.40
244 245 1.675641 ACGGCTGGATTTGGCTGTC 60.676 57.895 0.00 0.00 43.54 3.51
245 246 2.753966 CGGCTGGATTTGGCTGTCG 61.754 63.158 0.00 0.00 0.00 4.35
246 247 1.675641 GGCTGGATTTGGCTGTCGT 60.676 57.895 0.00 0.00 0.00 4.34
247 248 1.244019 GGCTGGATTTGGCTGTCGTT 61.244 55.000 0.00 0.00 0.00 3.85
248 249 0.169009 GCTGGATTTGGCTGTCGTTC 59.831 55.000 0.00 0.00 0.00 3.95
249 250 0.804989 CTGGATTTGGCTGTCGTTCC 59.195 55.000 0.00 0.00 0.00 3.62
250 251 0.608035 TGGATTTGGCTGTCGTTCCC 60.608 55.000 0.00 0.00 0.00 3.97
251 252 1.644786 GGATTTGGCTGTCGTTCCCG 61.645 60.000 0.00 0.00 0.00 5.14
252 253 0.953960 GATTTGGCTGTCGTTCCCGT 60.954 55.000 0.00 0.00 35.01 5.28
253 254 1.234615 ATTTGGCTGTCGTTCCCGTG 61.235 55.000 0.00 0.00 35.01 4.94
254 255 2.596553 TTTGGCTGTCGTTCCCGTGT 62.597 55.000 0.00 0.00 35.01 4.49
255 256 2.737376 GGCTGTCGTTCCCGTGTC 60.737 66.667 0.00 0.00 35.01 3.67
256 257 2.028484 GCTGTCGTTCCCGTGTCA 59.972 61.111 0.00 0.00 35.01 3.58
257 258 1.374252 GCTGTCGTTCCCGTGTCAT 60.374 57.895 0.00 0.00 35.01 3.06
258 259 1.626654 GCTGTCGTTCCCGTGTCATG 61.627 60.000 0.00 0.00 35.01 3.07
259 260 1.626654 CTGTCGTTCCCGTGTCATGC 61.627 60.000 0.00 0.00 35.01 4.06
260 261 1.666553 GTCGTTCCCGTGTCATGCA 60.667 57.895 0.00 0.00 35.01 3.96
261 262 1.374125 TCGTTCCCGTGTCATGCAG 60.374 57.895 0.00 0.00 35.01 4.41
262 263 2.390599 CGTTCCCGTGTCATGCAGG 61.391 63.158 0.00 0.00 0.00 4.85
280 281 3.648507 AGGGACTGTCGTCTGTATAGT 57.351 47.619 1.07 0.00 40.10 2.12
281 282 4.767578 AGGGACTGTCGTCTGTATAGTA 57.232 45.455 1.07 0.00 40.10 1.82
282 283 4.706035 AGGGACTGTCGTCTGTATAGTAG 58.294 47.826 1.07 0.00 40.10 2.57
283 284 4.163839 AGGGACTGTCGTCTGTATAGTAGT 59.836 45.833 1.07 0.00 40.10 2.73
284 285 4.880696 GGGACTGTCGTCTGTATAGTAGTT 59.119 45.833 1.07 0.00 40.10 2.24
285 286 5.356470 GGGACTGTCGTCTGTATAGTAGTTT 59.644 44.000 1.07 0.00 40.10 2.66
286 287 6.127786 GGGACTGTCGTCTGTATAGTAGTTTT 60.128 42.308 1.07 0.00 40.10 2.43
287 288 6.746364 GGACTGTCGTCTGTATAGTAGTTTTG 59.254 42.308 1.07 0.00 40.10 2.44
288 289 7.211966 ACTGTCGTCTGTATAGTAGTTTTGT 57.788 36.000 0.00 0.00 0.00 2.83
289 290 7.655490 ACTGTCGTCTGTATAGTAGTTTTGTT 58.345 34.615 0.00 0.00 0.00 2.83
290 291 7.594015 ACTGTCGTCTGTATAGTAGTTTTGTTG 59.406 37.037 0.00 0.00 0.00 3.33
291 292 6.364165 TGTCGTCTGTATAGTAGTTTTGTTGC 59.636 38.462 0.00 0.00 0.00 4.17
292 293 6.364165 GTCGTCTGTATAGTAGTTTTGTTGCA 59.636 38.462 0.00 0.00 0.00 4.08
293 294 7.063074 GTCGTCTGTATAGTAGTTTTGTTGCAT 59.937 37.037 0.00 0.00 0.00 3.96
294 295 7.062956 TCGTCTGTATAGTAGTTTTGTTGCATG 59.937 37.037 0.00 0.00 0.00 4.06
295 296 7.062956 CGTCTGTATAGTAGTTTTGTTGCATGA 59.937 37.037 0.00 0.00 0.00 3.07
296 297 8.883731 GTCTGTATAGTAGTTTTGTTGCATGAT 58.116 33.333 0.00 0.00 0.00 2.45
299 300 9.660180 TGTATAGTAGTTTTGTTGCATGATACA 57.340 29.630 0.00 0.00 0.00 2.29
302 303 6.324819 AGTAGTTTTGTTGCATGATACATGC 58.675 36.000 23.96 23.96 44.76 4.06
303 304 4.497300 AGTTTTGTTGCATGATACATGCC 58.503 39.130 26.40 16.22 43.94 4.40
304 305 4.021280 AGTTTTGTTGCATGATACATGCCA 60.021 37.500 26.40 17.18 43.94 4.92
305 306 4.739587 TTTGTTGCATGATACATGCCAT 57.260 36.364 26.40 0.00 43.94 4.40
306 307 3.994204 TGTTGCATGATACATGCCATC 57.006 42.857 26.40 18.53 43.94 3.51
307 308 2.624364 TGTTGCATGATACATGCCATCC 59.376 45.455 26.40 15.29 43.94 3.51
308 309 1.525941 TGCATGATACATGCCATCCG 58.474 50.000 26.40 0.00 43.94 4.18
309 310 1.072015 TGCATGATACATGCCATCCGA 59.928 47.619 26.40 10.12 43.94 4.55
310 311 2.290450 TGCATGATACATGCCATCCGAT 60.290 45.455 26.40 0.00 43.94 4.18
311 312 3.055240 TGCATGATACATGCCATCCGATA 60.055 43.478 26.40 8.93 43.94 2.92
312 313 3.310774 GCATGATACATGCCATCCGATAC 59.689 47.826 21.32 0.00 39.01 2.24
313 314 3.230743 TGATACATGCCATCCGATACG 57.769 47.619 0.00 0.00 0.00 3.06
342 343 6.838198 TCCGTTTGGACAATCTTATATTCG 57.162 37.500 0.00 0.00 40.17 3.34
343 344 5.756347 TCCGTTTGGACAATCTTATATTCGG 59.244 40.000 0.00 0.00 40.17 4.30
344 345 5.756347 CCGTTTGGACAATCTTATATTCGGA 59.244 40.000 0.00 0.00 37.49 4.55
345 346 6.259167 CCGTTTGGACAATCTTATATTCGGAA 59.741 38.462 0.00 0.00 37.49 4.30
346 347 7.345192 CGTTTGGACAATCTTATATTCGGAAG 58.655 38.462 0.00 0.00 0.00 3.46
347 348 7.011109 CGTTTGGACAATCTTATATTCGGAAGT 59.989 37.037 0.00 0.00 0.00 3.01
348 349 9.321562 GTTTGGACAATCTTATATTCGGAAGTA 57.678 33.333 0.00 0.00 0.00 2.24
349 350 8.882415 TTGGACAATCTTATATTCGGAAGTAC 57.118 34.615 0.00 0.00 0.00 2.73
350 351 7.439381 TGGACAATCTTATATTCGGAAGTACC 58.561 38.462 0.00 0.00 0.00 3.34
351 352 7.289317 TGGACAATCTTATATTCGGAAGTACCT 59.711 37.037 0.00 0.00 36.31 3.08
352 353 8.148999 GGACAATCTTATATTCGGAAGTACCTT 58.851 37.037 0.00 0.00 36.31 3.50
353 354 9.543783 GACAATCTTATATTCGGAAGTACCTTT 57.456 33.333 0.00 0.00 36.31 3.11
354 355 9.543783 ACAATCTTATATTCGGAAGTACCTTTC 57.456 33.333 0.00 0.00 36.31 2.62
355 356 9.765795 CAATCTTATATTCGGAAGTACCTTTCT 57.234 33.333 0.00 0.00 36.31 2.52
358 359 9.412460 TCTTATATTCGGAAGTACCTTTCTACA 57.588 33.333 0.00 0.00 36.31 2.74
359 360 9.460906 CTTATATTCGGAAGTACCTTTCTACAC 57.539 37.037 0.00 0.00 36.31 2.90
360 361 4.525912 TTCGGAAGTACCTTTCTACACC 57.474 45.455 0.00 0.00 36.31 4.16
361 362 2.827921 TCGGAAGTACCTTTCTACACCC 59.172 50.000 0.00 0.00 36.31 4.61
362 363 2.564062 CGGAAGTACCTTTCTACACCCA 59.436 50.000 0.00 0.00 36.31 4.51
363 364 3.368116 CGGAAGTACCTTTCTACACCCAG 60.368 52.174 0.00 0.00 36.31 4.45
364 365 3.055312 GGAAGTACCTTTCTACACCCAGG 60.055 52.174 0.00 0.00 35.41 4.45
365 366 3.555117 AGTACCTTTCTACACCCAGGA 57.445 47.619 0.00 0.00 0.00 3.86
366 367 3.442076 AGTACCTTTCTACACCCAGGAG 58.558 50.000 0.00 0.00 0.00 3.69
367 368 0.984995 ACCTTTCTACACCCAGGAGC 59.015 55.000 0.00 0.00 0.00 4.70
368 369 0.984230 CCTTTCTACACCCAGGAGCA 59.016 55.000 0.00 0.00 0.00 4.26
369 370 1.351017 CCTTTCTACACCCAGGAGCAA 59.649 52.381 0.00 0.00 0.00 3.91
370 371 2.224769 CCTTTCTACACCCAGGAGCAAA 60.225 50.000 0.00 0.00 0.00 3.68
371 372 3.562176 CCTTTCTACACCCAGGAGCAAAT 60.562 47.826 0.00 0.00 0.00 2.32
372 373 2.787473 TCTACACCCAGGAGCAAATG 57.213 50.000 0.00 0.00 0.00 2.32
373 374 1.098050 CTACACCCAGGAGCAAATGC 58.902 55.000 0.00 0.00 42.49 3.56
388 389 5.368256 GCAAATGCTCCTGGTATGAATAG 57.632 43.478 0.00 0.00 38.21 1.73
389 390 4.823989 GCAAATGCTCCTGGTATGAATAGT 59.176 41.667 0.00 0.00 38.21 2.12
390 391 5.997746 GCAAATGCTCCTGGTATGAATAGTA 59.002 40.000 0.00 0.00 38.21 1.82
391 392 6.486657 GCAAATGCTCCTGGTATGAATAGTAA 59.513 38.462 0.00 0.00 38.21 2.24
392 393 7.013274 GCAAATGCTCCTGGTATGAATAGTAAA 59.987 37.037 0.00 0.00 38.21 2.01
393 394 8.902806 CAAATGCTCCTGGTATGAATAGTAAAA 58.097 33.333 0.00 0.00 0.00 1.52
394 395 9.646522 AAATGCTCCTGGTATGAATAGTAAAAT 57.353 29.630 0.00 0.00 0.00 1.82
395 396 9.646522 AATGCTCCTGGTATGAATAGTAAAATT 57.353 29.630 0.00 0.00 0.00 1.82
463 464 8.801715 GTGACATACTTTCACAAATGTTTGAT 57.198 30.769 12.09 0.00 42.58 2.57
464 465 8.693504 GTGACATACTTTCACAAATGTTTGATG 58.306 33.333 12.09 6.13 42.58 3.07
465 466 8.412456 TGACATACTTTCACAAATGTTTGATGT 58.588 29.630 12.09 8.85 40.55 3.06
466 467 8.578308 ACATACTTTCACAAATGTTTGATGTG 57.422 30.769 12.09 1.67 44.45 3.21
467 468 5.971895 ACTTTCACAAATGTTTGATGTGC 57.028 34.783 12.09 0.00 43.15 4.57
468 469 5.417811 ACTTTCACAAATGTTTGATGTGCA 58.582 33.333 12.09 0.00 43.15 4.57
469 470 5.291614 ACTTTCACAAATGTTTGATGTGCAC 59.708 36.000 10.75 10.75 43.15 4.57
470 471 3.370276 TCACAAATGTTTGATGTGCACG 58.630 40.909 13.13 0.00 43.15 5.34
471 472 2.097299 CACAAATGTTTGATGTGCACGC 60.097 45.455 13.13 7.49 40.55 5.34
472 473 2.125685 CAAATGTTTGATGTGCACGCA 58.874 42.857 13.13 10.29 40.55 5.24
473 474 2.505628 AATGTTTGATGTGCACGCAA 57.494 40.000 17.72 17.72 0.00 4.85
474 475 2.505628 ATGTTTGATGTGCACGCAAA 57.494 40.000 24.89 24.89 0.00 3.68
475 476 2.284263 TGTTTGATGTGCACGCAAAA 57.716 40.000 28.19 18.37 33.80 2.44
476 477 2.819115 TGTTTGATGTGCACGCAAAAT 58.181 38.095 28.19 11.84 33.80 1.82
477 478 3.193263 TGTTTGATGTGCACGCAAAATT 58.807 36.364 28.19 4.24 33.80 1.82
478 479 3.620374 TGTTTGATGTGCACGCAAAATTT 59.380 34.783 28.19 3.01 33.80 1.82
479 480 4.203077 GTTTGATGTGCACGCAAAATTTC 58.797 39.130 28.19 17.52 33.80 2.17
480 481 3.089573 TGATGTGCACGCAAAATTTCA 57.910 38.095 13.13 2.37 0.00 2.69
481 482 3.651206 TGATGTGCACGCAAAATTTCAT 58.349 36.364 13.13 0.00 0.00 2.57
482 483 4.056740 TGATGTGCACGCAAAATTTCATT 58.943 34.783 13.13 0.00 0.00 2.57
483 484 3.856104 TGTGCACGCAAAATTTCATTG 57.144 38.095 13.13 0.00 0.00 2.82
498 499 4.517952 TTCATTGCGAAATCACATTGGT 57.482 36.364 0.00 0.00 0.00 3.67
499 500 3.835779 TCATTGCGAAATCACATTGGTG 58.164 40.909 0.00 0.00 46.66 4.17
509 510 1.659794 ACATTGGTGAAAGGCGTGC 59.340 52.632 0.00 0.00 0.00 5.34
510 511 0.823356 ACATTGGTGAAAGGCGTGCT 60.823 50.000 0.00 0.00 0.00 4.40
511 512 1.164411 CATTGGTGAAAGGCGTGCTA 58.836 50.000 0.00 0.00 0.00 3.49
512 513 1.539388 CATTGGTGAAAGGCGTGCTAA 59.461 47.619 0.00 0.00 0.00 3.09
513 514 1.681538 TTGGTGAAAGGCGTGCTAAA 58.318 45.000 0.00 0.00 0.00 1.85
514 515 1.681538 TGGTGAAAGGCGTGCTAAAA 58.318 45.000 0.00 0.00 0.00 1.52
515 516 2.025155 TGGTGAAAGGCGTGCTAAAAA 58.975 42.857 0.00 0.00 0.00 1.94
538 539 7.486802 AAAACAAAATCAAAGCTCCAAGATG 57.513 32.000 0.00 0.00 0.00 2.90
539 540 4.563061 ACAAAATCAAAGCTCCAAGATGC 58.437 39.130 0.00 0.00 0.00 3.91
540 541 4.282703 ACAAAATCAAAGCTCCAAGATGCT 59.717 37.500 0.00 0.00 41.82 3.79
550 551 5.560724 AGCTCCAAGATGCTTTTGTAAGTA 58.439 37.500 0.00 0.00 35.86 2.24
553 554 6.293955 GCTCCAAGATGCTTTTGTAAGTAACA 60.294 38.462 0.00 0.00 35.88 2.41
554 555 7.575720 GCTCCAAGATGCTTTTGTAAGTAACAT 60.576 37.037 0.00 0.00 38.10 2.71
556 557 8.637986 TCCAAGATGCTTTTGTAAGTAACATTT 58.362 29.630 0.00 0.00 38.10 2.32
557 558 9.260002 CCAAGATGCTTTTGTAAGTAACATTTT 57.740 29.630 0.00 0.00 38.10 1.82
561 562 9.677567 GATGCTTTTGTAAGTAACATTTTCAGA 57.322 29.630 0.00 0.00 38.10 3.27
567 568 7.060600 TGTAAGTAACATTTTCAGAGCATCG 57.939 36.000 0.00 0.00 34.21 3.84
570 571 6.992063 AGTAACATTTTCAGAGCATCGATT 57.008 33.333 0.00 0.00 42.67 3.34
573 574 6.939551 AACATTTTCAGAGCATCGATTTTG 57.060 33.333 0.00 0.00 42.67 2.44
578 579 7.769272 TTTTCAGAGCATCGATTTTGTTTTT 57.231 28.000 0.00 0.00 42.67 1.94
597 598 2.570415 TTTTACCACGCCTTCCATCA 57.430 45.000 0.00 0.00 0.00 3.07
600 601 2.036958 TACCACGCCTTCCATCAATG 57.963 50.000 0.00 0.00 0.00 2.82
602 603 0.452987 CCACGCCTTCCATCAATGTG 59.547 55.000 0.00 0.00 0.00 3.21
603 604 1.452110 CACGCCTTCCATCAATGTGA 58.548 50.000 0.00 0.00 0.00 3.58
604 605 2.019249 CACGCCTTCCATCAATGTGAT 58.981 47.619 0.00 0.00 37.65 3.06
608 609 3.861113 CGCCTTCCATCAATGTGATTTTG 59.139 43.478 0.00 0.00 34.28 2.44
609 610 3.619929 GCCTTCCATCAATGTGATTTTGC 59.380 43.478 0.00 0.00 34.28 3.68
611 612 4.380761 CCTTCCATCAATGTGATTTTGCGA 60.381 41.667 0.00 0.00 34.28 5.10
612 613 4.987408 TCCATCAATGTGATTTTGCGAT 57.013 36.364 0.00 0.00 34.28 4.58
616 617 5.577554 CCATCAATGTGATTTTGCGATGAAA 59.422 36.000 0.00 0.00 34.28 2.69
617 618 6.256975 CCATCAATGTGATTTTGCGATGAAAT 59.743 34.615 0.00 0.00 34.28 2.17
619 620 7.280730 TCAATGTGATTTTGCGATGAAATTC 57.719 32.000 0.00 0.00 0.00 2.17
620 621 7.092079 TCAATGTGATTTTGCGATGAAATTCT 58.908 30.769 0.00 0.00 0.00 2.40
621 622 6.880822 ATGTGATTTTGCGATGAAATTCTG 57.119 33.333 0.00 0.00 0.00 3.02
624 625 7.022979 TGTGATTTTGCGATGAAATTCTGTAG 58.977 34.615 0.00 0.00 0.00 2.74
625 626 6.470235 GTGATTTTGCGATGAAATTCTGTAGG 59.530 38.462 0.00 0.00 0.00 3.18
626 627 4.355543 TTTGCGATGAAATTCTGTAGGC 57.644 40.909 0.00 0.00 0.00 3.93
630 631 3.126858 GCGATGAAATTCTGTAGGCACAA 59.873 43.478 0.00 0.00 33.22 3.33
631 632 4.651994 CGATGAAATTCTGTAGGCACAAC 58.348 43.478 0.00 0.00 33.22 3.32
635 693 5.587289 TGAAATTCTGTAGGCACAACAAAC 58.413 37.500 0.00 0.00 33.22 2.93
655 713 5.752472 CAAACATTTGTGAAAGTATGGCACA 59.248 36.000 0.00 0.00 40.44 4.57
716 774 9.743057 TTTATTTGATTTTACTGTTCACACCAG 57.257 29.630 0.00 0.00 36.01 4.00
718 776 5.042463 TGATTTTACTGTTCACACCAGGA 57.958 39.130 0.00 0.00 34.16 3.86
719 777 5.063204 TGATTTTACTGTTCACACCAGGAG 58.937 41.667 0.00 0.00 34.16 3.69
720 778 2.543777 TTACTGTTCACACCAGGAGC 57.456 50.000 0.00 0.00 34.16 4.70
721 779 1.419381 TACTGTTCACACCAGGAGCA 58.581 50.000 0.00 0.00 34.16 4.26
722 780 0.767375 ACTGTTCACACCAGGAGCAT 59.233 50.000 0.00 0.00 34.16 3.79
723 781 1.143684 ACTGTTCACACCAGGAGCATT 59.856 47.619 0.00 0.00 34.16 3.56
724 782 2.233271 CTGTTCACACCAGGAGCATTT 58.767 47.619 0.00 0.00 0.00 2.32
725 783 1.955778 TGTTCACACCAGGAGCATTTG 59.044 47.619 0.00 0.00 0.00 2.32
726 784 0.961019 TTCACACCAGGAGCATTTGC 59.039 50.000 0.00 0.00 42.49 3.68
739 797 3.543680 GCATTTGCTCCTAGGTGTAGA 57.456 47.619 9.08 1.22 38.21 2.59
740 798 3.873910 GCATTTGCTCCTAGGTGTAGAA 58.126 45.455 9.08 4.19 38.21 2.10
741 799 4.261801 GCATTTGCTCCTAGGTGTAGAAA 58.738 43.478 9.08 7.77 38.21 2.52
742 800 4.095036 GCATTTGCTCCTAGGTGTAGAAAC 59.905 45.833 9.08 0.00 38.21 2.78
744 802 4.803098 TTGCTCCTAGGTGTAGAAACTC 57.197 45.455 9.08 0.00 0.00 3.01
745 803 3.097614 TGCTCCTAGGTGTAGAAACTCC 58.902 50.000 9.08 0.00 39.18 3.85
746 804 3.097614 GCTCCTAGGTGTAGAAACTCCA 58.902 50.000 9.08 0.00 40.97 3.86
747 805 3.119065 GCTCCTAGGTGTAGAAACTCCAC 60.119 52.174 9.08 0.00 40.97 4.02
748 806 3.087031 TCCTAGGTGTAGAAACTCCACG 58.913 50.000 9.08 0.00 40.97 4.94
749 807 2.824341 CCTAGGTGTAGAAACTCCACGT 59.176 50.000 0.00 0.00 40.97 4.49
750 808 3.119566 CCTAGGTGTAGAAACTCCACGTC 60.120 52.174 0.00 0.00 40.97 4.34
753 811 2.352519 GGTGTAGAAACTCCACGTCCTC 60.353 54.545 0.00 0.00 38.81 3.71
754 812 2.557490 GTGTAGAAACTCCACGTCCTCT 59.443 50.000 0.00 0.00 0.00 3.69
755 813 3.005578 GTGTAGAAACTCCACGTCCTCTT 59.994 47.826 0.00 0.00 0.00 2.85
756 814 4.217118 GTGTAGAAACTCCACGTCCTCTTA 59.783 45.833 0.00 0.00 0.00 2.10
758 816 6.094603 GTGTAGAAACTCCACGTCCTCTTATA 59.905 42.308 0.00 0.00 0.00 0.98
759 817 6.832384 TGTAGAAACTCCACGTCCTCTTATAT 59.168 38.462 0.00 0.00 0.00 0.86
760 818 6.793505 AGAAACTCCACGTCCTCTTATATT 57.206 37.500 0.00 0.00 0.00 1.28
761 819 7.184067 AGAAACTCCACGTCCTCTTATATTT 57.816 36.000 0.00 0.00 0.00 1.40
762 820 7.266400 AGAAACTCCACGTCCTCTTATATTTC 58.734 38.462 0.00 0.00 0.00 2.17
764 822 6.793505 ACTCCACGTCCTCTTATATTTCTT 57.206 37.500 0.00 0.00 0.00 2.52
765 823 7.184067 ACTCCACGTCCTCTTATATTTCTTT 57.816 36.000 0.00 0.00 0.00 2.52
766 824 8.302515 ACTCCACGTCCTCTTATATTTCTTTA 57.697 34.615 0.00 0.00 0.00 1.85
767 825 8.925338 ACTCCACGTCCTCTTATATTTCTTTAT 58.075 33.333 0.00 0.00 0.00 1.40
790 1192 2.748388 AGGGAGTAATACGAAGCCACT 58.252 47.619 0.00 0.00 0.00 4.00
812 1214 2.743636 TCACAACGATCTGGTCTTCC 57.256 50.000 0.00 0.00 0.00 3.46
964 2962 4.844349 ATTTGGAAGCTAGAGCAACCTA 57.156 40.909 14.75 7.47 45.16 3.08
994 3009 6.128172 CCACGAAACTGATCAGAATAAGCTTT 60.128 38.462 29.27 16.12 0.00 3.51
1022 3037 2.370849 TGAGGTTCCCCACTTTAGTGTC 59.629 50.000 8.91 0.00 44.21 3.67
1250 3265 2.699954 CTTCGTCAGGGTAAGCAATGT 58.300 47.619 0.00 0.00 0.00 2.71
1259 3282 2.949644 GGGTAAGCAATGTCCATACACC 59.050 50.000 0.00 0.00 38.78 4.16
1261 3284 3.627577 GGTAAGCAATGTCCATACACCTG 59.372 47.826 0.00 0.00 38.78 4.00
1262 3285 3.719268 AAGCAATGTCCATACACCTGA 57.281 42.857 0.00 0.00 38.78 3.86
1265 3288 3.457380 AGCAATGTCCATACACCTGATCT 59.543 43.478 0.00 0.00 38.78 2.75
1266 3289 3.562973 GCAATGTCCATACACCTGATCTG 59.437 47.826 0.00 0.00 38.78 2.90
1267 3290 4.684214 GCAATGTCCATACACCTGATCTGA 60.684 45.833 0.38 0.00 38.78 3.27
1269 3292 3.440127 TGTCCATACACCTGATCTGACA 58.560 45.455 0.38 0.00 0.00 3.58
1270 3293 3.837731 TGTCCATACACCTGATCTGACAA 59.162 43.478 0.38 0.00 0.00 3.18
1272 3295 5.045651 TGTCCATACACCTGATCTGACAATT 60.046 40.000 0.38 0.00 0.00 2.32
1273 3296 5.295292 GTCCATACACCTGATCTGACAATTG 59.705 44.000 3.24 3.24 0.00 2.32
1274 3297 5.189539 TCCATACACCTGATCTGACAATTGA 59.810 40.000 13.59 0.00 0.00 2.57
1275 3298 6.060136 CCATACACCTGATCTGACAATTGAT 58.940 40.000 13.59 0.00 0.00 2.57
1276 3299 6.544931 CCATACACCTGATCTGACAATTGATT 59.455 38.462 13.59 0.00 0.00 2.57
1277 3300 7.067859 CCATACACCTGATCTGACAATTGATTT 59.932 37.037 13.59 0.00 0.00 2.17
1279 3302 6.684686 ACACCTGATCTGACAATTGATTTTG 58.315 36.000 13.59 0.00 0.00 2.44
1281 3304 5.107133 CCTGATCTGACAATTGATTTTGCC 58.893 41.667 13.59 0.00 0.00 4.52
1285 3346 4.873817 TCTGACAATTGATTTTGCCAGTG 58.126 39.130 13.59 0.00 38.02 3.66
1582 3643 2.202743 CGTGTGTCCATCGCCGAT 60.203 61.111 0.00 0.00 0.00 4.18
1744 3807 1.812235 TCACTCAGCGCATTCACAAT 58.188 45.000 11.47 0.00 0.00 2.71
1829 3892 1.112916 TCAGTGCCCTCTGTCGACAA 61.113 55.000 20.49 9.70 36.85 3.18
1897 3960 2.041216 GGGGGAGTTTGACAACCAGTAT 59.959 50.000 0.00 0.00 32.70 2.12
2125 4188 1.942657 CACCACTAGGCAATCATTCCG 59.057 52.381 0.00 0.00 39.06 4.30
2143 4206 7.770201 TCATTCCGAAATCATTCAAAGCATAA 58.230 30.769 0.00 0.00 35.15 1.90
2180 4257 2.084546 TCCGTCGATCGCAGATCATAT 58.915 47.619 11.09 0.00 45.12 1.78
2317 4409 2.823924 AATGTGCATGCAAGCTCAAA 57.176 40.000 24.58 2.54 40.80 2.69
2325 4417 2.869233 TGCAAGCTCAAAGACAAACC 57.131 45.000 0.00 0.00 0.00 3.27
2439 4532 5.142061 TCATCCAAACTAGCACGACTTTA 57.858 39.130 0.00 0.00 0.00 1.85
2512 6042 7.795859 TCAAAAGCTTTTCTGTTTTGTTGAAG 58.204 30.769 21.45 5.72 40.50 3.02
2513 6043 7.655328 TCAAAAGCTTTTCTGTTTTGTTGAAGA 59.345 29.630 21.45 7.93 40.50 2.87
2514 6044 7.586714 AAAGCTTTTCTGTTTTGTTGAAGAG 57.413 32.000 5.69 0.00 0.00 2.85
2563 6417 6.041069 CCACATCCCTTTACTTTTGGTTGTTA 59.959 38.462 0.00 0.00 30.39 2.41
2570 6424 9.471084 CCCTTTACTTTTGGTTGTTATTAACAG 57.529 33.333 9.10 0.00 43.27 3.16
2581 7011 6.403636 GGTTGTTATTAACAGCTCTGATGTGG 60.404 42.308 18.87 0.00 43.27 4.17
2643 7724 3.133003 ACCATTAAGCAGATAGTGACGCT 59.867 43.478 0.00 0.00 35.90 5.07
2694 7775 0.392863 TTGCATGTCGGTGGAGATGG 60.393 55.000 0.00 0.00 42.56 3.51
2705 7786 0.468214 TGGAGATGGGACGGAGCTAG 60.468 60.000 0.00 0.00 0.00 3.42
2769 7850 2.161609 CAGAATTTACAACCCGGAGCAC 59.838 50.000 0.73 0.00 0.00 4.40
2773 7854 0.320374 TTACAACCCGGAGCACAGAG 59.680 55.000 0.73 0.00 0.00 3.35
2815 7902 2.693591 TGTTCCCGTCATCAGGATAGAC 59.306 50.000 0.00 0.00 30.55 2.59
2816 7903 2.959707 GTTCCCGTCATCAGGATAGACT 59.040 50.000 0.00 0.00 30.55 3.24
2819 7906 3.651423 TCCCGTCATCAGGATAGACTAGA 59.349 47.826 0.00 0.00 0.00 2.43
2821 7908 4.638421 CCCGTCATCAGGATAGACTAGATC 59.362 50.000 0.00 0.00 0.00 2.75
2822 7909 4.331443 CCGTCATCAGGATAGACTAGATCG 59.669 50.000 0.00 0.00 0.00 3.69
2823 7910 5.172205 CGTCATCAGGATAGACTAGATCGA 58.828 45.833 0.00 0.00 0.00 3.59
2824 7911 5.290885 CGTCATCAGGATAGACTAGATCGAG 59.709 48.000 0.00 0.70 0.00 4.04
2826 7913 7.047891 GTCATCAGGATAGACTAGATCGAGAT 58.952 42.308 10.07 0.62 0.00 2.75
2827 7914 7.224753 GTCATCAGGATAGACTAGATCGAGATC 59.775 44.444 10.07 5.00 38.09 2.75
2828 7915 6.613153 TCAGGATAGACTAGATCGAGATCA 57.387 41.667 10.07 1.56 40.22 2.92
2830 7917 5.290885 CAGGATAGACTAGATCGAGATCACG 59.709 48.000 10.07 6.17 40.22 4.35
2831 7918 4.033587 GGATAGACTAGATCGAGATCACGC 59.966 50.000 10.07 0.00 40.22 5.34
2832 7919 2.147958 AGACTAGATCGAGATCACGCC 58.852 52.381 10.07 2.52 40.22 5.68
2833 7920 2.147958 GACTAGATCGAGATCACGCCT 58.852 52.381 10.07 9.54 40.22 5.52
2834 7921 2.550606 GACTAGATCGAGATCACGCCTT 59.449 50.000 10.07 0.00 40.22 4.35
2835 7922 2.292016 ACTAGATCGAGATCACGCCTTG 59.708 50.000 10.07 10.17 40.22 3.61
2836 7923 0.387202 AGATCGAGATCACGCCTTGG 59.613 55.000 14.64 0.00 40.22 3.61
2837 7924 1.218230 GATCGAGATCACGCCTTGGC 61.218 60.000 7.75 0.75 37.74 4.52
2838 7925 2.960957 ATCGAGATCACGCCTTGGCG 62.961 60.000 29.32 29.32 39.31 5.69
2840 7927 4.393155 AGATCACGCCTTGGCGCA 62.393 61.111 30.58 19.35 36.58 6.09
2841 7928 3.430862 GATCACGCCTTGGCGCAA 61.431 61.111 30.58 20.20 36.58 4.85
2842 7929 3.386867 GATCACGCCTTGGCGCAAG 62.387 63.158 30.58 21.07 40.75 4.01
2856 7943 4.278513 CAAGGGTGCCGGTCCCAA 62.279 66.667 29.22 0.00 46.82 4.12
2857 7944 4.280019 AAGGGTGCCGGTCCCAAC 62.280 66.667 29.22 12.44 46.82 3.77
2860 7947 4.941309 GGTGCCGGTCCCAACGTT 62.941 66.667 1.90 0.00 0.00 3.99
2861 7948 2.903350 GTGCCGGTCCCAACGTTT 60.903 61.111 1.90 0.00 0.00 3.60
2863 7950 2.333581 GCCGGTCCCAACGTTTTG 59.666 61.111 1.90 0.00 0.00 2.44
2870 7957 4.026226 CCAACGTTTTGGCCAAGC 57.974 55.556 19.48 14.50 46.09 4.01
2871 7958 1.142748 CCAACGTTTTGGCCAAGCA 59.857 52.632 19.48 6.82 46.09 3.91
2872 7959 0.875474 CCAACGTTTTGGCCAAGCAG 60.875 55.000 19.48 15.42 46.09 4.24
2873 7960 0.102120 CAACGTTTTGGCCAAGCAGA 59.898 50.000 19.48 0.00 0.00 4.26
2876 7963 2.235016 ACGTTTTGGCCAAGCAGATAA 58.765 42.857 19.48 6.07 0.00 1.75
2877 7964 2.825532 ACGTTTTGGCCAAGCAGATAAT 59.174 40.909 19.48 0.00 0.00 1.28
2878 7965 3.181397 CGTTTTGGCCAAGCAGATAATG 58.819 45.455 19.48 10.50 0.00 1.90
2880 7967 3.872511 TTTGGCCAAGCAGATAATGTG 57.127 42.857 19.48 0.00 0.00 3.21
2881 7968 2.804986 TGGCCAAGCAGATAATGTGA 57.195 45.000 0.61 0.00 0.00 3.58
2882 7969 3.084536 TGGCCAAGCAGATAATGTGAA 57.915 42.857 0.61 0.00 0.00 3.18
2883 7970 3.018856 TGGCCAAGCAGATAATGTGAAG 58.981 45.455 0.61 0.00 0.00 3.02
2887 7974 4.201891 GCCAAGCAGATAATGTGAAGTCAG 60.202 45.833 0.00 0.00 0.00 3.51
2889 7976 6.108687 CCAAGCAGATAATGTGAAGTCAGTA 58.891 40.000 0.00 0.00 0.00 2.74
2891 7978 6.537453 AGCAGATAATGTGAAGTCAGTAGT 57.463 37.500 0.00 0.00 0.00 2.73
2893 7980 8.067751 AGCAGATAATGTGAAGTCAGTAGTAA 57.932 34.615 0.00 0.00 0.00 2.24
2894 7981 8.700051 AGCAGATAATGTGAAGTCAGTAGTAAT 58.300 33.333 0.00 0.00 0.00 1.89
2895 7982 8.973378 GCAGATAATGTGAAGTCAGTAGTAATC 58.027 37.037 0.00 0.00 0.00 1.75
2896 7983 9.469807 CAGATAATGTGAAGTCAGTAGTAATCC 57.530 37.037 0.00 0.00 0.00 3.01
2897 7984 9.201989 AGATAATGTGAAGTCAGTAGTAATCCA 57.798 33.333 0.00 0.00 0.00 3.41
2900 7987 6.665992 TGTGAAGTCAGTAGTAATCCAAGT 57.334 37.500 0.00 0.00 0.00 3.16
2901 7988 7.062749 TGTGAAGTCAGTAGTAATCCAAGTT 57.937 36.000 0.00 0.00 0.00 2.66
2902 7989 7.506114 TGTGAAGTCAGTAGTAATCCAAGTTT 58.494 34.615 0.00 0.00 0.00 2.66
2905 7992 7.817962 TGAAGTCAGTAGTAATCCAAGTTTAGC 59.182 37.037 0.00 0.00 0.00 3.09
2906 7993 7.241042 AGTCAGTAGTAATCCAAGTTTAGCA 57.759 36.000 0.00 0.00 0.00 3.49
2909 7996 9.765795 GTCAGTAGTAATCCAAGTTTAGCATAT 57.234 33.333 0.00 0.00 0.00 1.78
2910 7997 9.764363 TCAGTAGTAATCCAAGTTTAGCATATG 57.236 33.333 0.00 0.00 0.00 1.78
2911 7998 9.547753 CAGTAGTAATCCAAGTTTAGCATATGT 57.452 33.333 4.29 0.00 0.00 2.29
2953 8915 6.966534 AGTGGAGAAGAAACATTCAATTGT 57.033 33.333 5.13 0.00 0.00 2.71
2955 8917 7.428826 AGTGGAGAAGAAACATTCAATTGTTC 58.571 34.615 5.13 1.56 38.85 3.18
2956 8918 7.068593 AGTGGAGAAGAAACATTCAATTGTTCA 59.931 33.333 5.13 0.00 38.85 3.18
2957 8919 7.869429 GTGGAGAAGAAACATTCAATTGTTCAT 59.131 33.333 5.13 0.00 38.85 2.57
2960 8922 8.807667 AGAAGAAACATTCAATTGTTCATGAC 57.192 30.769 16.73 0.00 38.85 3.06
2961 8923 7.869429 AGAAGAAACATTCAATTGTTCATGACC 59.131 33.333 16.73 0.00 38.85 4.02
2962 8924 7.053316 AGAAACATTCAATTGTTCATGACCA 57.947 32.000 16.73 0.00 38.85 4.02
2963 8925 7.673180 AGAAACATTCAATTGTTCATGACCAT 58.327 30.769 16.73 0.00 38.85 3.55
2964 8926 7.601130 AGAAACATTCAATTGTTCATGACCATG 59.399 33.333 16.73 3.70 38.85 3.66
2965 8927 6.593268 ACATTCAATTGTTCATGACCATGA 57.407 33.333 16.73 8.49 45.30 3.07
2974 8936 1.101635 CATGACCATGAGCCCAGCTG 61.102 60.000 6.78 6.78 39.88 4.24
2976 8938 0.909133 TGACCATGAGCCCAGCTGTA 60.909 55.000 13.81 0.00 39.88 2.74
2977 8939 0.179062 GACCATGAGCCCAGCTGTAG 60.179 60.000 13.81 4.69 39.88 2.74
2978 8940 1.147824 CCATGAGCCCAGCTGTAGG 59.852 63.158 13.81 8.89 39.88 3.18
2980 8942 0.763652 CATGAGCCCAGCTGTAGGAT 59.236 55.000 13.81 6.18 39.88 3.24
2981 8943 1.973515 CATGAGCCCAGCTGTAGGATA 59.026 52.381 13.81 0.00 39.88 2.59
2984 8946 3.856900 TGAGCCCAGCTGTAGGATAATA 58.143 45.455 13.81 0.00 39.88 0.98
2985 8947 3.834813 TGAGCCCAGCTGTAGGATAATAG 59.165 47.826 13.81 0.00 39.88 1.73
2986 8948 4.090090 GAGCCCAGCTGTAGGATAATAGA 58.910 47.826 13.81 0.00 39.88 1.98
2987 8949 3.835395 AGCCCAGCTGTAGGATAATAGAC 59.165 47.826 13.81 0.00 37.57 2.59
2988 8950 3.578716 GCCCAGCTGTAGGATAATAGACA 59.421 47.826 13.81 0.00 0.00 3.41
2990 8952 5.280215 GCCCAGCTGTAGGATAATAGACAAT 60.280 44.000 13.81 0.00 0.00 2.71
2992 8954 7.551585 CCCAGCTGTAGGATAATAGACAATAG 58.448 42.308 13.81 0.00 0.00 1.73
2994 8956 7.179338 CCAGCTGTAGGATAATAGACAATAGGT 59.821 40.741 13.81 0.00 0.00 3.08
2996 8958 9.824216 AGCTGTAGGATAATAGACAATAGGTAA 57.176 33.333 0.00 0.00 0.00 2.85
3031 9676 9.950680 AATTACAGTTTACAACACAAGAATCAG 57.049 29.630 0.00 0.00 0.00 2.90
3037 9682 6.691754 TTACAACACAAGAATCAGAAGCAA 57.308 33.333 0.00 0.00 0.00 3.91
3042 9687 4.276926 ACACAAGAATCAGAAGCAAAGACC 59.723 41.667 0.00 0.00 0.00 3.85
3044 9689 4.518211 ACAAGAATCAGAAGCAAAGACCTG 59.482 41.667 0.00 0.00 0.00 4.00
3046 9691 1.831580 ATCAGAAGCAAAGACCTGGC 58.168 50.000 0.00 0.00 0.00 4.85
3048 9693 0.603707 CAGAAGCAAAGACCTGGCGA 60.604 55.000 0.00 0.00 0.00 5.54
3050 9695 1.168714 GAAGCAAAGACCTGGCGAAT 58.831 50.000 0.00 0.00 0.00 3.34
3052 9697 0.036732 AGCAAAGACCTGGCGAATGA 59.963 50.000 0.00 0.00 0.00 2.57
3057 10320 4.380444 GCAAAGACCTGGCGAATGATAAAA 60.380 41.667 0.00 0.00 0.00 1.52
3062 10325 5.418840 AGACCTGGCGAATGATAAAACATTT 59.581 36.000 0.00 0.00 40.03 2.32
3063 10326 6.601613 AGACCTGGCGAATGATAAAACATTTA 59.398 34.615 0.00 0.00 40.03 1.40
3064 10327 7.122055 AGACCTGGCGAATGATAAAACATTTAA 59.878 33.333 0.00 0.00 40.03 1.52
3067 10330 8.755018 CCTGGCGAATGATAAAACATTTAAATC 58.245 33.333 0.00 0.00 40.03 2.17
3070 10333 8.755018 GGCGAATGATAAAACATTTAAATCCAG 58.245 33.333 0.00 0.00 40.03 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 8.553459 TCAAGAGATCTGAAACAATACTTTCC 57.447 34.615 0.00 0.00 30.23 3.13
24 25 6.180472 GGGGTTCAAGAGATCTGAAACAATA 58.820 40.000 0.00 0.00 31.41 1.90
30 31 3.251484 ACTGGGGTTCAAGAGATCTGAA 58.749 45.455 0.00 0.00 0.00 3.02
32 33 3.710209 AACTGGGGTTCAAGAGATCTG 57.290 47.619 0.00 0.00 0.00 2.90
47 48 5.983118 TGTCGATGTATGTAAGCATAACTGG 59.017 40.000 0.00 0.00 39.09 4.00
59 60 5.767269 TGCAAATTGTTTGTCGATGTATGT 58.233 33.333 4.56 0.00 42.56 2.29
63 64 4.685628 GGAATGCAAATTGTTTGTCGATGT 59.314 37.500 0.00 0.00 42.56 3.06
93 94 2.099098 GTCGGATGCCAAATTACCAAGG 59.901 50.000 0.00 0.00 0.00 3.61
101 102 1.016627 CATCGTGTCGGATGCCAAAT 58.983 50.000 0.00 0.00 37.59 2.32
108 109 2.452813 GCAACGCATCGTGTCGGAT 61.453 57.895 0.00 0.00 39.99 4.18
119 120 0.526662 TGATCATGCAATGCAACGCA 59.473 45.000 13.45 14.89 46.21 5.24
135 136 1.858091 GTGTGTATAGCAGCGCTGAT 58.142 50.000 40.21 36.38 40.10 2.90
136 137 0.525455 CGTGTGTATAGCAGCGCTGA 60.525 55.000 40.21 21.71 40.10 4.26
137 138 0.525455 TCGTGTGTATAGCAGCGCTG 60.525 55.000 32.83 32.83 40.10 5.18
138 139 0.385751 ATCGTGTGTATAGCAGCGCT 59.614 50.000 2.64 2.64 43.41 5.92
139 140 0.504384 CATCGTGTGTATAGCAGCGC 59.496 55.000 0.00 0.00 0.00 5.92
142 143 2.047040 CGCTCATCGTGTGTATAGCAG 58.953 52.381 0.00 0.00 0.00 4.24
144 145 1.269102 ACCGCTCATCGTGTGTATAGC 60.269 52.381 0.00 0.00 36.19 2.97
145 146 2.385315 CACCGCTCATCGTGTGTATAG 58.615 52.381 0.00 0.00 35.83 1.31
146 147 1.066454 CCACCGCTCATCGTGTGTATA 59.934 52.381 0.00 0.00 37.53 1.47
147 148 0.179111 CCACCGCTCATCGTGTGTAT 60.179 55.000 0.00 0.00 37.53 2.29
148 149 1.214325 CCACCGCTCATCGTGTGTA 59.786 57.895 0.00 0.00 37.53 2.90
150 151 2.094659 GTCCACCGCTCATCGTGTG 61.095 63.158 0.00 0.00 38.34 3.82
151 152 2.261671 GTCCACCGCTCATCGTGT 59.738 61.111 0.00 0.00 36.19 4.49
152 153 2.613739 ATCGTCCACCGCTCATCGTG 62.614 60.000 0.00 0.00 36.19 4.35
153 154 1.099295 TATCGTCCACCGCTCATCGT 61.099 55.000 0.00 0.00 36.19 3.73
154 155 0.241213 ATATCGTCCACCGCTCATCG 59.759 55.000 0.00 0.00 36.19 3.84
155 156 1.000163 ACATATCGTCCACCGCTCATC 60.000 52.381 0.00 0.00 36.19 2.92
156 157 1.040646 ACATATCGTCCACCGCTCAT 58.959 50.000 0.00 0.00 36.19 2.90
157 158 0.102300 CACATATCGTCCACCGCTCA 59.898 55.000 0.00 0.00 36.19 4.26
159 160 0.821517 TTCACATATCGTCCACCGCT 59.178 50.000 0.00 0.00 36.19 5.52
160 161 0.928229 GTTCACATATCGTCCACCGC 59.072 55.000 0.00 0.00 36.19 5.68
161 162 1.197055 CGTTCACATATCGTCCACCG 58.803 55.000 0.00 0.00 38.13 4.94
162 163 2.190981 GTCGTTCACATATCGTCCACC 58.809 52.381 0.00 0.00 0.00 4.61
163 164 2.871133 TGTCGTTCACATATCGTCCAC 58.129 47.619 0.00 0.00 0.00 4.02
164 165 3.579335 TTGTCGTTCACATATCGTCCA 57.421 42.857 0.00 0.00 33.90 4.02
165 166 3.302480 GCATTGTCGTTCACATATCGTCC 60.302 47.826 0.00 0.00 33.90 4.79
166 167 3.305897 TGCATTGTCGTTCACATATCGTC 59.694 43.478 0.00 0.00 33.90 4.20
167 168 3.258228 TGCATTGTCGTTCACATATCGT 58.742 40.909 0.00 0.00 33.90 3.73
169 170 5.234972 TGATCTGCATTGTCGTTCACATATC 59.765 40.000 0.00 0.00 33.90 1.63
170 171 5.118286 TGATCTGCATTGTCGTTCACATAT 58.882 37.500 0.00 0.00 33.90 1.78
175 176 1.733912 GCTGATCTGCATTGTCGTTCA 59.266 47.619 18.67 0.00 0.00 3.18
176 177 2.005451 AGCTGATCTGCATTGTCGTTC 58.995 47.619 24.33 0.00 34.99 3.95
178 179 1.649664 GAGCTGATCTGCATTGTCGT 58.350 50.000 24.33 3.82 34.99 4.34
179 180 0.575859 CGAGCTGATCTGCATTGTCG 59.424 55.000 24.33 19.67 34.99 4.35
180 181 1.592081 GACGAGCTGATCTGCATTGTC 59.408 52.381 24.33 21.72 34.99 3.18
181 182 1.649664 GACGAGCTGATCTGCATTGT 58.350 50.000 24.33 18.42 34.99 2.71
182 183 0.935898 GGACGAGCTGATCTGCATTG 59.064 55.000 24.33 15.75 34.99 2.82
183 184 0.538584 TGGACGAGCTGATCTGCATT 59.461 50.000 24.33 9.41 34.99 3.56
184 185 0.757512 ATGGACGAGCTGATCTGCAT 59.242 50.000 24.33 10.87 34.99 3.96
185 186 0.179092 CATGGACGAGCTGATCTGCA 60.179 55.000 24.33 5.05 34.99 4.41
186 187 1.497223 GCATGGACGAGCTGATCTGC 61.497 60.000 16.18 16.18 0.00 4.26
187 188 0.179092 TGCATGGACGAGCTGATCTG 60.179 55.000 0.00 0.00 0.00 2.90
188 189 0.179089 GTGCATGGACGAGCTGATCT 60.179 55.000 0.10 0.00 0.00 2.75
189 190 0.460811 TGTGCATGGACGAGCTGATC 60.461 55.000 13.03 0.00 0.00 2.92
190 191 0.036105 TTGTGCATGGACGAGCTGAT 60.036 50.000 13.03 0.00 0.00 2.90
191 192 0.250252 TTTGTGCATGGACGAGCTGA 60.250 50.000 13.03 0.00 0.00 4.26
192 193 0.592637 TTTTGTGCATGGACGAGCTG 59.407 50.000 13.03 0.00 0.00 4.24
193 194 0.593128 GTTTTGTGCATGGACGAGCT 59.407 50.000 13.03 0.00 0.00 4.09
194 195 0.593128 AGTTTTGTGCATGGACGAGC 59.407 50.000 13.03 7.83 0.00 5.03
196 197 1.960417 TCAGTTTTGTGCATGGACGA 58.040 45.000 13.03 8.16 0.00 4.20
197 198 2.033299 ACTTCAGTTTTGTGCATGGACG 59.967 45.455 13.03 0.00 0.00 4.79
198 199 3.066621 TCACTTCAGTTTTGTGCATGGAC 59.933 43.478 10.90 10.90 0.00 4.02
199 200 3.286353 TCACTTCAGTTTTGTGCATGGA 58.714 40.909 0.00 0.00 0.00 3.41
200 201 3.713858 TCACTTCAGTTTTGTGCATGG 57.286 42.857 0.00 0.00 0.00 3.66
201 202 3.488310 GCTTCACTTCAGTTTTGTGCATG 59.512 43.478 0.00 0.00 0.00 4.06
202 203 3.130869 TGCTTCACTTCAGTTTTGTGCAT 59.869 39.130 0.00 0.00 0.00 3.96
203 204 2.491298 TGCTTCACTTCAGTTTTGTGCA 59.509 40.909 0.00 0.00 0.00 4.57
204 205 3.111098 CTGCTTCACTTCAGTTTTGTGC 58.889 45.455 0.00 0.00 0.00 4.57
206 207 3.063997 CGTCTGCTTCACTTCAGTTTTGT 59.936 43.478 0.00 0.00 0.00 2.83
207 208 3.546815 CCGTCTGCTTCACTTCAGTTTTG 60.547 47.826 0.00 0.00 0.00 2.44
208 209 2.614057 CCGTCTGCTTCACTTCAGTTTT 59.386 45.455 0.00 0.00 0.00 2.43
209 210 2.213499 CCGTCTGCTTCACTTCAGTTT 58.787 47.619 0.00 0.00 0.00 2.66
210 211 1.871080 CCGTCTGCTTCACTTCAGTT 58.129 50.000 0.00 0.00 0.00 3.16
211 212 0.601311 GCCGTCTGCTTCACTTCAGT 60.601 55.000 0.00 0.00 36.87 3.41
212 213 2.157421 GCCGTCTGCTTCACTTCAG 58.843 57.895 0.00 0.00 36.87 3.02
213 214 4.361253 GCCGTCTGCTTCACTTCA 57.639 55.556 0.00 0.00 36.87 3.02
222 223 3.056313 GCCAAATCCAGCCGTCTGC 62.056 63.158 0.00 0.00 39.00 4.26
223 224 1.377725 AGCCAAATCCAGCCGTCTG 60.378 57.895 0.00 0.00 40.02 3.51
226 227 1.675641 GACAGCCAAATCCAGCCGT 60.676 57.895 0.00 0.00 0.00 5.68
229 230 0.169009 GAACGACAGCCAAATCCAGC 59.831 55.000 0.00 0.00 0.00 4.85
231 232 0.608035 GGGAACGACAGCCAAATCCA 60.608 55.000 0.00 0.00 0.00 3.41
232 233 2.180674 GGGAACGACAGCCAAATCC 58.819 57.895 0.00 0.00 0.00 3.01
245 246 2.040544 CCCTGCATGACACGGGAAC 61.041 63.158 0.00 0.00 38.39 3.62
246 247 2.220586 TCCCTGCATGACACGGGAA 61.221 57.895 6.68 0.00 40.61 3.97
247 248 2.606213 TCCCTGCATGACACGGGA 60.606 61.111 5.07 5.07 41.02 5.14
248 249 2.436646 GTCCCTGCATGACACGGG 60.437 66.667 10.69 5.94 37.81 5.28
249 250 1.742880 CAGTCCCTGCATGACACGG 60.743 63.158 16.23 0.25 35.15 4.94
250 251 1.004560 ACAGTCCCTGCATGACACG 60.005 57.895 16.23 10.36 34.37 4.49
251 252 1.016130 CGACAGTCCCTGCATGACAC 61.016 60.000 16.23 8.11 34.37 3.67
252 253 1.293179 CGACAGTCCCTGCATGACA 59.707 57.895 16.23 0.00 34.37 3.58
253 254 0.737715 GACGACAGTCCCTGCATGAC 60.738 60.000 0.00 8.14 41.41 3.06
254 255 1.591703 GACGACAGTCCCTGCATGA 59.408 57.895 0.00 0.00 41.41 3.07
255 256 4.192000 GACGACAGTCCCTGCATG 57.808 61.111 0.00 0.00 41.41 4.06
264 265 7.211966 ACAAAACTACTATACAGACGACAGT 57.788 36.000 0.00 0.00 0.00 3.55
265 266 7.410513 GCAACAAAACTACTATACAGACGACAG 60.411 40.741 0.00 0.00 0.00 3.51
266 267 6.364165 GCAACAAAACTACTATACAGACGACA 59.636 38.462 0.00 0.00 0.00 4.35
267 268 6.364165 TGCAACAAAACTACTATACAGACGAC 59.636 38.462 0.00 0.00 0.00 4.34
268 269 6.448852 TGCAACAAAACTACTATACAGACGA 58.551 36.000 0.00 0.00 0.00 4.20
269 270 6.699895 TGCAACAAAACTACTATACAGACG 57.300 37.500 0.00 0.00 0.00 4.18
270 271 8.251750 TCATGCAACAAAACTACTATACAGAC 57.748 34.615 0.00 0.00 0.00 3.51
273 274 9.660180 TGTATCATGCAACAAAACTACTATACA 57.340 29.630 0.00 0.00 0.00 2.29
276 277 8.131100 GCATGTATCATGCAACAAAACTACTAT 58.869 33.333 23.86 0.00 44.00 2.12
277 278 7.415095 GGCATGTATCATGCAACAAAACTACTA 60.415 37.037 27.76 0.00 46.21 1.82
278 279 6.324819 GCATGTATCATGCAACAAAACTACT 58.675 36.000 23.86 0.00 44.00 2.57
279 280 5.516339 GGCATGTATCATGCAACAAAACTAC 59.484 40.000 27.76 9.63 46.21 2.73
280 281 5.184671 TGGCATGTATCATGCAACAAAACTA 59.815 36.000 27.76 7.15 46.21 2.24
281 282 4.021280 TGGCATGTATCATGCAACAAAACT 60.021 37.500 27.76 0.00 46.21 2.66
282 283 4.244066 TGGCATGTATCATGCAACAAAAC 58.756 39.130 27.76 14.19 46.21 2.43
283 284 4.532314 TGGCATGTATCATGCAACAAAA 57.468 36.364 27.76 9.79 46.21 2.44
284 285 4.441773 GGATGGCATGTATCATGCAACAAA 60.442 41.667 27.76 13.27 46.21 2.83
285 286 3.068448 GGATGGCATGTATCATGCAACAA 59.932 43.478 27.76 15.14 46.21 2.83
286 287 2.624364 GGATGGCATGTATCATGCAACA 59.376 45.455 27.76 20.23 46.21 3.33
287 288 2.351060 CGGATGGCATGTATCATGCAAC 60.351 50.000 27.76 19.48 46.21 4.17
288 289 1.881324 CGGATGGCATGTATCATGCAA 59.119 47.619 27.76 21.18 46.21 4.08
289 290 1.072015 TCGGATGGCATGTATCATGCA 59.928 47.619 27.76 17.81 46.21 3.96
290 291 1.812235 TCGGATGGCATGTATCATGC 58.188 50.000 21.66 21.66 43.85 4.06
291 292 3.553105 CGTATCGGATGGCATGTATCATG 59.447 47.826 3.81 5.49 0.00 3.07
292 293 3.785486 CGTATCGGATGGCATGTATCAT 58.215 45.455 3.81 6.32 0.00 2.45
293 294 3.230743 CGTATCGGATGGCATGTATCA 57.769 47.619 3.81 2.21 0.00 2.15
319 320 5.756347 CCGAATATAAGATTGTCCAAACGGA 59.244 40.000 0.00 0.00 36.91 4.69
320 321 5.756347 TCCGAATATAAGATTGTCCAAACGG 59.244 40.000 0.00 0.00 36.27 4.44
321 322 6.838198 TCCGAATATAAGATTGTCCAAACG 57.162 37.500 0.00 0.00 0.00 3.60
322 323 8.209917 ACTTCCGAATATAAGATTGTCCAAAC 57.790 34.615 0.00 0.00 0.00 2.93
323 324 9.321562 GTACTTCCGAATATAAGATTGTCCAAA 57.678 33.333 0.00 0.00 0.00 3.28
324 325 7.929785 GGTACTTCCGAATATAAGATTGTCCAA 59.070 37.037 0.00 0.00 0.00 3.53
325 326 7.289317 AGGTACTTCCGAATATAAGATTGTCCA 59.711 37.037 0.00 0.00 41.99 4.02
326 327 7.668492 AGGTACTTCCGAATATAAGATTGTCC 58.332 38.462 0.00 0.00 41.99 4.02
346 347 2.093606 GCTCCTGGGTGTAGAAAGGTAC 60.094 54.545 0.00 0.00 0.00 3.34
347 348 2.185387 GCTCCTGGGTGTAGAAAGGTA 58.815 52.381 0.00 0.00 0.00 3.08
348 349 0.984995 GCTCCTGGGTGTAGAAAGGT 59.015 55.000 0.00 0.00 0.00 3.50
349 350 0.984230 TGCTCCTGGGTGTAGAAAGG 59.016 55.000 0.00 0.00 0.00 3.11
350 351 2.859165 TTGCTCCTGGGTGTAGAAAG 57.141 50.000 0.00 0.00 0.00 2.62
351 352 3.420893 CATTTGCTCCTGGGTGTAGAAA 58.579 45.455 0.00 0.00 0.00 2.52
352 353 2.879756 GCATTTGCTCCTGGGTGTAGAA 60.880 50.000 0.00 0.00 38.21 2.10
353 354 1.340017 GCATTTGCTCCTGGGTGTAGA 60.340 52.381 0.00 0.00 38.21 2.59
354 355 1.098050 GCATTTGCTCCTGGGTGTAG 58.902 55.000 0.00 0.00 38.21 2.74
355 356 3.264574 GCATTTGCTCCTGGGTGTA 57.735 52.632 0.00 0.00 38.21 2.90
356 357 4.102113 GCATTTGCTCCTGGGTGT 57.898 55.556 0.00 0.00 38.21 4.16
366 367 4.823989 ACTATTCATACCAGGAGCATTTGC 59.176 41.667 0.00 0.00 42.49 3.68
367 368 8.450578 TTTACTATTCATACCAGGAGCATTTG 57.549 34.615 0.00 0.00 0.00 2.32
368 369 9.646522 ATTTTACTATTCATACCAGGAGCATTT 57.353 29.630 0.00 0.00 0.00 2.32
369 370 9.646522 AATTTTACTATTCATACCAGGAGCATT 57.353 29.630 0.00 0.00 0.00 3.56
439 440 8.412456 ACATCAAACATTTGTGAAAGTATGTCA 58.588 29.630 4.36 0.00 39.18 3.58
440 441 8.693504 CACATCAAACATTTGTGAAAGTATGTC 58.306 33.333 4.36 0.00 42.59 3.06
441 442 7.169645 GCACATCAAACATTTGTGAAAGTATGT 59.830 33.333 6.47 2.86 42.59 2.29
442 443 7.169476 TGCACATCAAACATTTGTGAAAGTATG 59.831 33.333 6.47 2.32 42.59 2.39
443 444 7.169645 GTGCACATCAAACATTTGTGAAAGTAT 59.830 33.333 13.17 0.00 42.59 2.12
444 445 6.475076 GTGCACATCAAACATTTGTGAAAGTA 59.525 34.615 13.17 0.00 42.59 2.24
445 446 5.291614 GTGCACATCAAACATTTGTGAAAGT 59.708 36.000 13.17 0.00 42.59 2.66
446 447 5.554883 CGTGCACATCAAACATTTGTGAAAG 60.555 40.000 18.64 0.00 42.59 2.62
447 448 4.267214 CGTGCACATCAAACATTTGTGAAA 59.733 37.500 18.64 0.00 42.59 2.69
448 449 3.795639 CGTGCACATCAAACATTTGTGAA 59.204 39.130 18.64 0.00 42.59 3.18
449 450 3.370276 CGTGCACATCAAACATTTGTGA 58.630 40.909 18.64 0.00 42.59 3.58
450 451 2.097299 GCGTGCACATCAAACATTTGTG 60.097 45.455 18.64 5.20 42.80 3.33
451 452 2.126467 GCGTGCACATCAAACATTTGT 58.874 42.857 18.64 0.00 39.18 2.83
452 453 2.125685 TGCGTGCACATCAAACATTTG 58.874 42.857 18.64 0.00 39.48 2.32
453 454 2.505628 TGCGTGCACATCAAACATTT 57.494 40.000 18.64 0.00 0.00 2.32
454 455 2.505628 TTGCGTGCACATCAAACATT 57.494 40.000 18.64 0.00 0.00 2.71
455 456 2.505628 TTTGCGTGCACATCAAACAT 57.494 40.000 22.64 0.00 0.00 2.71
456 457 2.284263 TTTTGCGTGCACATCAAACA 57.716 40.000 24.91 16.71 30.45 2.83
457 458 3.857923 AATTTTGCGTGCACATCAAAC 57.142 38.095 24.91 6.83 30.45 2.93
458 459 3.867493 TGAAATTTTGCGTGCACATCAAA 59.133 34.783 22.64 22.64 0.00 2.69
459 460 3.451526 TGAAATTTTGCGTGCACATCAA 58.548 36.364 18.64 16.58 0.00 2.57
460 461 3.089573 TGAAATTTTGCGTGCACATCA 57.910 38.095 18.64 11.17 0.00 3.07
461 462 4.387936 CAATGAAATTTTGCGTGCACATC 58.612 39.130 18.64 8.42 31.22 3.06
462 463 3.364167 GCAATGAAATTTTGCGTGCACAT 60.364 39.130 18.64 0.00 39.98 3.21
463 464 2.033065 GCAATGAAATTTTGCGTGCACA 60.033 40.909 18.64 0.00 39.98 4.57
464 465 2.562948 GCAATGAAATTTTGCGTGCAC 58.437 42.857 6.82 6.82 39.98 4.57
465 466 2.945798 GCAATGAAATTTTGCGTGCA 57.054 40.000 10.43 0.00 39.98 4.57
476 477 4.685165 CACCAATGTGATTTCGCAATGAAA 59.315 37.500 10.06 0.00 45.76 2.69
477 478 4.022503 TCACCAATGTGATTTCGCAATGAA 60.023 37.500 10.06 0.00 46.40 2.57
478 479 3.505293 TCACCAATGTGATTTCGCAATGA 59.495 39.130 10.06 4.41 46.40 2.57
479 480 3.835779 TCACCAATGTGATTTCGCAATG 58.164 40.909 0.00 0.26 46.40 2.82
490 491 0.664166 GCACGCCTTTCACCAATGTG 60.664 55.000 0.00 0.00 44.18 3.21
491 492 0.823356 AGCACGCCTTTCACCAATGT 60.823 50.000 0.00 0.00 0.00 2.71
492 493 1.164411 TAGCACGCCTTTCACCAATG 58.836 50.000 0.00 0.00 0.00 2.82
493 494 1.904287 TTAGCACGCCTTTCACCAAT 58.096 45.000 0.00 0.00 0.00 3.16
494 495 1.681538 TTTAGCACGCCTTTCACCAA 58.318 45.000 0.00 0.00 0.00 3.67
495 496 1.681538 TTTTAGCACGCCTTTCACCA 58.318 45.000 0.00 0.00 0.00 4.17
496 497 2.785713 TTTTTAGCACGCCTTTCACC 57.214 45.000 0.00 0.00 0.00 4.02
513 514 7.467675 GCATCTTGGAGCTTTGATTTTGTTTTT 60.468 33.333 0.00 0.00 0.00 1.94
514 515 6.017687 GCATCTTGGAGCTTTGATTTTGTTTT 60.018 34.615 0.00 0.00 0.00 2.43
515 516 5.467735 GCATCTTGGAGCTTTGATTTTGTTT 59.532 36.000 0.00 0.00 0.00 2.83
516 517 4.992951 GCATCTTGGAGCTTTGATTTTGTT 59.007 37.500 0.00 0.00 0.00 2.83
517 518 4.282703 AGCATCTTGGAGCTTTGATTTTGT 59.717 37.500 0.00 0.00 38.01 2.83
518 519 4.817517 AGCATCTTGGAGCTTTGATTTTG 58.182 39.130 0.00 0.00 38.01 2.44
527 528 4.401925 ACTTACAAAAGCATCTTGGAGCT 58.598 39.130 0.00 0.00 44.31 4.09
528 529 4.773323 ACTTACAAAAGCATCTTGGAGC 57.227 40.909 0.00 0.00 36.05 4.70
529 530 7.202016 TGTTACTTACAAAAGCATCTTGGAG 57.798 36.000 0.00 0.00 36.05 3.86
530 531 7.759489 ATGTTACTTACAAAAGCATCTTGGA 57.241 32.000 0.00 0.00 40.89 3.53
531 532 8.816640 AAATGTTACTTACAAAAGCATCTTGG 57.183 30.769 0.00 0.00 40.89 3.61
534 535 9.683069 CTGAAAATGTTACTTACAAAAGCATCT 57.317 29.630 0.00 0.00 40.89 2.90
535 536 9.677567 TCTGAAAATGTTACTTACAAAAGCATC 57.322 29.630 0.00 0.00 40.89 3.91
536 537 9.683069 CTCTGAAAATGTTACTTACAAAAGCAT 57.317 29.630 0.00 0.00 40.89 3.79
537 538 7.647715 GCTCTGAAAATGTTACTTACAAAAGCA 59.352 33.333 0.00 0.00 40.89 3.91
538 539 7.647715 TGCTCTGAAAATGTTACTTACAAAAGC 59.352 33.333 0.00 0.00 40.89 3.51
539 540 9.683069 ATGCTCTGAAAATGTTACTTACAAAAG 57.317 29.630 0.00 0.00 40.89 2.27
540 541 9.677567 GATGCTCTGAAAATGTTACTTACAAAA 57.322 29.630 0.00 0.00 40.89 2.44
541 542 8.015087 CGATGCTCTGAAAATGTTACTTACAAA 58.985 33.333 0.00 0.00 40.89 2.83
542 543 7.386573 TCGATGCTCTGAAAATGTTACTTACAA 59.613 33.333 0.00 0.00 40.89 2.41
543 544 6.871492 TCGATGCTCTGAAAATGTTACTTACA 59.129 34.615 0.00 0.00 41.97 2.41
544 545 7.290857 TCGATGCTCTGAAAATGTTACTTAC 57.709 36.000 0.00 0.00 0.00 2.34
545 546 8.492673 AATCGATGCTCTGAAAATGTTACTTA 57.507 30.769 0.00 0.00 0.00 2.24
547 548 6.992063 AATCGATGCTCTGAAAATGTTACT 57.008 33.333 0.00 0.00 0.00 2.24
550 551 6.449698 ACAAAATCGATGCTCTGAAAATGTT 58.550 32.000 0.00 0.00 0.00 2.71
553 554 7.951530 AAAACAAAATCGATGCTCTGAAAAT 57.048 28.000 0.00 0.00 0.00 1.82
554 555 7.769272 AAAAACAAAATCGATGCTCTGAAAA 57.231 28.000 0.00 0.00 0.00 2.29
578 579 2.570415 TGATGGAAGGCGTGGTAAAA 57.430 45.000 0.00 0.00 0.00 1.52
579 580 2.570415 TTGATGGAAGGCGTGGTAAA 57.430 45.000 0.00 0.00 0.00 2.01
580 581 2.290641 ACATTGATGGAAGGCGTGGTAA 60.291 45.455 0.00 0.00 0.00 2.85
581 582 1.280710 ACATTGATGGAAGGCGTGGTA 59.719 47.619 0.00 0.00 0.00 3.25
584 585 1.452110 TCACATTGATGGAAGGCGTG 58.548 50.000 0.00 0.00 0.00 5.34
586 587 3.788333 AAATCACATTGATGGAAGGCG 57.212 42.857 0.00 0.00 37.15 5.52
587 588 3.619929 GCAAAATCACATTGATGGAAGGC 59.380 43.478 0.00 0.00 37.15 4.35
588 589 3.861113 CGCAAAATCACATTGATGGAAGG 59.139 43.478 0.00 0.00 37.15 3.46
591 592 4.398673 TCATCGCAAAATCACATTGATGGA 59.601 37.500 0.00 0.00 37.15 3.41
592 593 4.674475 TCATCGCAAAATCACATTGATGG 58.326 39.130 0.00 0.00 37.15 3.51
593 594 6.635166 TTTCATCGCAAAATCACATTGATG 57.365 33.333 0.00 0.00 37.15 3.07
594 595 7.762615 AGAATTTCATCGCAAAATCACATTGAT 59.237 29.630 0.00 0.00 39.09 2.57
595 596 7.062488 CAGAATTTCATCGCAAAATCACATTGA 59.938 33.333 0.00 0.00 0.00 2.57
596 597 7.148705 ACAGAATTTCATCGCAAAATCACATTG 60.149 33.333 0.00 0.00 0.00 2.82
597 598 6.869913 ACAGAATTTCATCGCAAAATCACATT 59.130 30.769 0.00 0.00 0.00 2.71
600 601 6.470235 CCTACAGAATTTCATCGCAAAATCAC 59.530 38.462 0.00 0.00 0.00 3.06
602 603 5.456822 GCCTACAGAATTTCATCGCAAAATC 59.543 40.000 0.00 0.00 0.00 2.17
603 604 5.105797 TGCCTACAGAATTTCATCGCAAAAT 60.106 36.000 0.00 0.00 0.00 1.82
604 605 4.217334 TGCCTACAGAATTTCATCGCAAAA 59.783 37.500 0.00 0.00 0.00 2.44
608 609 2.677836 TGTGCCTACAGAATTTCATCGC 59.322 45.455 0.00 0.00 31.91 4.58
609 610 4.154015 TGTTGTGCCTACAGAATTTCATCG 59.846 41.667 0.00 0.00 38.23 3.84
611 612 6.183360 TGTTTGTTGTGCCTACAGAATTTCAT 60.183 34.615 0.00 0.00 38.23 2.57
612 613 5.126222 TGTTTGTTGTGCCTACAGAATTTCA 59.874 36.000 0.00 0.00 38.23 2.69
616 617 5.789643 AATGTTTGTTGTGCCTACAGAAT 57.210 34.783 0.00 0.00 38.23 2.40
617 618 5.347342 CAAATGTTTGTTGTGCCTACAGAA 58.653 37.500 0.00 0.00 38.23 3.02
631 632 5.752472 TGTGCCATACTTTCACAAATGTTTG 59.248 36.000 4.04 4.04 43.62 2.93
690 748 9.743057 CTGGTGTGAACAGTAAAATCAAATAAA 57.257 29.630 0.00 0.00 0.00 1.40
691 749 8.356657 CCTGGTGTGAACAGTAAAATCAAATAA 58.643 33.333 0.00 0.00 34.16 1.40
692 750 7.721842 TCCTGGTGTGAACAGTAAAATCAAATA 59.278 33.333 0.00 0.00 34.16 1.40
694 752 5.888724 TCCTGGTGTGAACAGTAAAATCAAA 59.111 36.000 0.00 0.00 34.16 2.69
695 753 5.441500 TCCTGGTGTGAACAGTAAAATCAA 58.558 37.500 0.00 0.00 34.16 2.57
697 755 4.083271 GCTCCTGGTGTGAACAGTAAAATC 60.083 45.833 0.00 0.00 34.16 2.17
698 756 3.821033 GCTCCTGGTGTGAACAGTAAAAT 59.179 43.478 0.00 0.00 34.16 1.82
699 757 3.211045 GCTCCTGGTGTGAACAGTAAAA 58.789 45.455 0.00 0.00 34.16 1.52
700 758 2.171659 TGCTCCTGGTGTGAACAGTAAA 59.828 45.455 0.00 0.00 34.16 2.01
704 762 1.901591 AATGCTCCTGGTGTGAACAG 58.098 50.000 0.00 0.00 35.74 3.16
706 764 1.336240 GCAAATGCTCCTGGTGTGAAC 60.336 52.381 0.00 0.00 38.21 3.18
708 766 2.644887 GCAAATGCTCCTGGTGTGA 58.355 52.632 0.00 0.00 38.21 3.58
719 777 3.543680 TCTACACCTAGGAGCAAATGC 57.456 47.619 17.98 0.00 42.49 3.56
720 778 5.491982 AGTTTCTACACCTAGGAGCAAATG 58.508 41.667 17.98 4.32 0.00 2.32
721 779 5.338463 GGAGTTTCTACACCTAGGAGCAAAT 60.338 44.000 17.98 0.00 32.81 2.32
722 780 4.020485 GGAGTTTCTACACCTAGGAGCAAA 60.020 45.833 17.98 5.19 32.81 3.68
723 781 3.514309 GGAGTTTCTACACCTAGGAGCAA 59.486 47.826 17.98 0.00 32.81 3.91
724 782 3.097614 GGAGTTTCTACACCTAGGAGCA 58.902 50.000 17.98 0.00 32.81 4.26
725 783 3.097614 TGGAGTTTCTACACCTAGGAGC 58.902 50.000 17.98 0.00 36.15 4.70
726 784 3.128938 CGTGGAGTTTCTACACCTAGGAG 59.871 52.174 17.98 10.85 41.96 3.69
727 785 3.087031 CGTGGAGTTTCTACACCTAGGA 58.913 50.000 17.98 0.00 41.96 2.94
729 787 3.119566 GGACGTGGAGTTTCTACACCTAG 60.120 52.174 0.00 0.00 41.96 3.02
732 790 1.617357 AGGACGTGGAGTTTCTACACC 59.383 52.381 0.00 1.27 41.96 4.16
734 792 2.872732 AGAGGACGTGGAGTTTCTACA 58.127 47.619 0.00 0.00 0.00 2.74
736 794 7.893124 AATATAAGAGGACGTGGAGTTTCTA 57.107 36.000 0.00 0.00 0.00 2.10
737 795 6.793505 AATATAAGAGGACGTGGAGTTTCT 57.206 37.500 0.00 0.00 0.00 2.52
738 796 7.266400 AGAAATATAAGAGGACGTGGAGTTTC 58.734 38.462 0.00 0.00 0.00 2.78
739 797 7.184067 AGAAATATAAGAGGACGTGGAGTTT 57.816 36.000 0.00 0.00 0.00 2.66
740 798 6.793505 AGAAATATAAGAGGACGTGGAGTT 57.206 37.500 0.00 0.00 0.00 3.01
741 799 6.793505 AAGAAATATAAGAGGACGTGGAGT 57.206 37.500 0.00 0.00 0.00 3.85
760 818 9.538508 GCTTCGTATTACTCCCTTTATAAAGAA 57.461 33.333 23.95 11.69 38.28 2.52
761 819 8.146412 GGCTTCGTATTACTCCCTTTATAAAGA 58.854 37.037 23.95 6.85 38.28 2.52
762 820 7.929785 TGGCTTCGTATTACTCCCTTTATAAAG 59.070 37.037 16.90 16.90 35.79 1.85
764 822 7.070322 AGTGGCTTCGTATTACTCCCTTTATAA 59.930 37.037 0.00 0.00 0.00 0.98
765 823 6.552350 AGTGGCTTCGTATTACTCCCTTTATA 59.448 38.462 0.00 0.00 0.00 0.98
766 824 5.365895 AGTGGCTTCGTATTACTCCCTTTAT 59.634 40.000 0.00 0.00 0.00 1.40
767 825 4.713321 AGTGGCTTCGTATTACTCCCTTTA 59.287 41.667 0.00 0.00 0.00 1.85
768 826 3.518303 AGTGGCTTCGTATTACTCCCTTT 59.482 43.478 0.00 0.00 0.00 3.11
769 827 3.105283 AGTGGCTTCGTATTACTCCCTT 58.895 45.455 0.00 0.00 0.00 3.95
771 829 2.694109 AGAGTGGCTTCGTATTACTCCC 59.306 50.000 0.00 0.00 38.76 4.30
772 830 4.361420 GAAGAGTGGCTTCGTATTACTCC 58.639 47.826 0.00 0.00 43.22 3.85
790 1192 3.306088 GGAAGACCAGATCGTTGTGAAGA 60.306 47.826 0.00 0.00 35.97 2.87
964 2962 2.628178 TCTGATCAGTTTCGTGGACTGT 59.372 45.455 21.92 0.00 43.80 3.55
1140 3155 2.650163 GTCACGCACGATGTACTCC 58.350 57.895 0.00 0.00 0.00 3.85
1250 3265 5.189539 TCAATTGTCAGATCAGGTGTATGGA 59.810 40.000 5.13 0.00 0.00 3.41
1259 3282 5.716094 TGGCAAAATCAATTGTCAGATCAG 58.284 37.500 5.13 0.00 39.81 2.90
1265 3288 3.391965 GCACTGGCAAAATCAATTGTCA 58.608 40.909 5.13 0.00 42.26 3.58
1266 3289 2.738314 GGCACTGGCAAAATCAATTGTC 59.262 45.455 5.13 0.00 43.71 3.18
1267 3290 2.369532 AGGCACTGGCAAAATCAATTGT 59.630 40.909 5.13 0.00 43.71 2.71
1285 3346 4.996788 AAAATCAATGGTCAGATCAGGC 57.003 40.909 0.00 0.00 0.00 4.85
1375 3436 1.267574 TGGCCTGCGAATCCTTCTCT 61.268 55.000 3.32 0.00 0.00 3.10
1582 3643 1.013596 CGTTGTTGTTGAGCACCTCA 58.986 50.000 0.00 0.00 38.87 3.86
1821 3884 1.870580 CGCTAGGGTTGTTTGTCGACA 60.871 52.381 15.76 15.76 32.31 4.35
1829 3892 1.844289 TGGGGTCGCTAGGGTTGTT 60.844 57.895 6.70 0.00 0.00 2.83
1897 3960 0.863144 GCGCCAGTACGTTCTTGAAA 59.137 50.000 0.00 0.00 34.88 2.69
1994 4057 2.270205 CTGCCACGCCTTCTCCAT 59.730 61.111 0.00 0.00 0.00 3.41
2143 4206 6.798482 TCGACGGACACACAAAATATATAGT 58.202 36.000 0.00 0.00 0.00 2.12
2317 4409 5.008712 GGATCTCTTTCGTTTTGGTTTGTCT 59.991 40.000 0.00 0.00 0.00 3.41
2346 4439 2.892374 AGCGATGTGAATCGTTCATGA 58.108 42.857 9.58 0.00 45.11 3.07
2347 4440 3.551485 TGTAGCGATGTGAATCGTTCATG 59.449 43.478 9.58 0.00 45.11 3.07
2350 4443 4.143200 TGTTTGTAGCGATGTGAATCGTTC 60.143 41.667 9.58 2.42 45.11 3.95
2354 4447 4.437390 CCCTTGTTTGTAGCGATGTGAATC 60.437 45.833 0.00 0.00 0.00 2.52
2512 6042 7.441458 GGAATGAATGTTACCTGTGTATACCTC 59.559 40.741 0.00 0.00 0.00 3.85
2513 6043 7.280356 GGAATGAATGTTACCTGTGTATACCT 58.720 38.462 0.00 0.00 0.00 3.08
2514 6044 6.485648 GGGAATGAATGTTACCTGTGTATACC 59.514 42.308 0.00 0.00 0.00 2.73
2563 6417 3.264193 TGACCCACATCAGAGCTGTTAAT 59.736 43.478 0.00 0.00 0.00 1.40
2581 7011 7.615582 TGACAAGACAATTAATCATCTGACC 57.384 36.000 2.95 0.00 0.00 4.02
2643 7724 6.995686 ACAGTATTTACCGGCAATATTGATGA 59.004 34.615 24.79 0.00 31.53 2.92
2694 7775 6.116806 TCTAATATGATCTCTAGCTCCGTCC 58.883 44.000 0.00 0.00 0.00 4.79
2705 7786 9.932699 GTATGCATGCAAATCTAATATGATCTC 57.067 33.333 26.68 0.00 0.00 2.75
2769 7850 3.748048 TCCTGCAACGAAGAAAATCTCTG 59.252 43.478 0.00 0.00 33.37 3.35
2773 7854 5.222631 ACAATTCCTGCAACGAAGAAAATC 58.777 37.500 0.00 0.00 0.00 2.17
2799 7880 4.331443 CGATCTAGTCTATCCTGATGACGG 59.669 50.000 0.00 0.00 36.01 4.79
2815 7902 2.351253 CCAAGGCGTGATCTCGATCTAG 60.351 54.545 20.54 8.35 38.60 2.43
2816 7903 1.609072 CCAAGGCGTGATCTCGATCTA 59.391 52.381 20.54 0.00 38.60 1.98
2819 7906 1.227380 GCCAAGGCGTGATCTCGAT 60.227 57.895 20.54 5.52 0.00 3.59
2840 7927 4.280019 GTTGGGACCGGCACCCTT 62.280 66.667 29.42 0.00 46.82 3.95
2844 7931 2.483197 AAAACGTTGGGACCGGCAC 61.483 57.895 0.00 0.00 0.00 5.01
2845 7932 2.124236 AAAACGTTGGGACCGGCA 60.124 55.556 0.00 0.00 0.00 5.69
2846 7933 2.333581 CAAAACGTTGGGACCGGC 59.666 61.111 0.00 0.00 0.00 6.13
2854 7941 0.102120 TCTGCTTGGCCAAAACGTTG 59.898 50.000 20.91 7.75 34.25 4.10
2856 7943 1.904287 TATCTGCTTGGCCAAAACGT 58.096 45.000 20.91 7.40 0.00 3.99
2857 7944 3.181397 CATTATCTGCTTGGCCAAAACG 58.819 45.455 20.91 9.36 0.00 3.60
2859 7946 3.831333 TCACATTATCTGCTTGGCCAAAA 59.169 39.130 20.91 10.16 0.00 2.44
2860 7947 3.429492 TCACATTATCTGCTTGGCCAAA 58.571 40.909 20.91 4.58 0.00 3.28
2861 7948 3.084536 TCACATTATCTGCTTGGCCAA 57.915 42.857 19.25 19.25 0.00 4.52
2863 7950 3.019564 ACTTCACATTATCTGCTTGGCC 58.980 45.455 0.00 0.00 0.00 5.36
2864 7951 3.691118 TGACTTCACATTATCTGCTTGGC 59.309 43.478 0.00 0.00 0.00 4.52
2866 7953 6.815641 ACTACTGACTTCACATTATCTGCTTG 59.184 38.462 0.00 0.00 0.00 4.01
2867 7954 6.940739 ACTACTGACTTCACATTATCTGCTT 58.059 36.000 0.00 0.00 0.00 3.91
2869 7956 8.879342 ATTACTACTGACTTCACATTATCTGC 57.121 34.615 0.00 0.00 0.00 4.26
2870 7957 9.469807 GGATTACTACTGACTTCACATTATCTG 57.530 37.037 0.00 0.00 0.00 2.90
2871 7958 9.201989 TGGATTACTACTGACTTCACATTATCT 57.798 33.333 0.00 0.00 0.00 1.98
2872 7959 9.817809 TTGGATTACTACTGACTTCACATTATC 57.182 33.333 0.00 0.00 0.00 1.75
2873 7960 9.823647 CTTGGATTACTACTGACTTCACATTAT 57.176 33.333 0.00 0.00 0.00 1.28
2876 7963 7.246171 ACTTGGATTACTACTGACTTCACAT 57.754 36.000 0.00 0.00 0.00 3.21
2877 7964 6.665992 ACTTGGATTACTACTGACTTCACA 57.334 37.500 0.00 0.00 0.00 3.58
2878 7965 7.964604 AAACTTGGATTACTACTGACTTCAC 57.035 36.000 0.00 0.00 0.00 3.18
2880 7967 7.817962 TGCTAAACTTGGATTACTACTGACTTC 59.182 37.037 0.00 0.00 0.00 3.01
2881 7968 7.676947 TGCTAAACTTGGATTACTACTGACTT 58.323 34.615 0.00 0.00 0.00 3.01
2882 7969 7.241042 TGCTAAACTTGGATTACTACTGACT 57.759 36.000 0.00 0.00 0.00 3.41
2883 7970 9.765795 ATATGCTAAACTTGGATTACTACTGAC 57.234 33.333 0.00 0.00 0.00 3.51
2928 8554 8.641498 ACAATTGAATGTTTCTTCTCCACTAT 57.359 30.769 13.59 0.00 0.00 2.12
2930 8556 6.966534 ACAATTGAATGTTTCTTCTCCACT 57.033 33.333 13.59 0.00 0.00 4.00
2931 8557 7.202526 TGAACAATTGAATGTTTCTTCTCCAC 58.797 34.615 13.59 0.00 43.31 4.02
2932 8558 7.345422 TGAACAATTGAATGTTTCTTCTCCA 57.655 32.000 13.59 0.00 43.31 3.86
2933 8559 8.084073 TCATGAACAATTGAATGTTTCTTCTCC 58.916 33.333 13.59 0.00 43.31 3.71
2935 8561 7.869429 GGTCATGAACAATTGAATGTTTCTTCT 59.131 33.333 13.59 0.00 43.31 2.85
2936 8562 7.652909 TGGTCATGAACAATTGAATGTTTCTTC 59.347 33.333 12.03 3.42 43.31 2.87
2950 8912 1.075212 TGGGCTCATGGTCATGAACAA 59.925 47.619 19.17 0.46 46.10 2.83
2951 8913 0.697658 TGGGCTCATGGTCATGAACA 59.302 50.000 17.41 17.41 46.10 3.18
2952 8914 1.386533 CTGGGCTCATGGTCATGAAC 58.613 55.000 13.73 2.98 46.10 3.18
2953 8915 0.394762 GCTGGGCTCATGGTCATGAA 60.395 55.000 13.73 0.14 46.10 2.57
2955 8917 1.101635 CAGCTGGGCTCATGGTCATG 61.102 60.000 5.57 4.67 36.40 3.07
2956 8918 1.226542 CAGCTGGGCTCATGGTCAT 59.773 57.895 5.57 0.00 36.40 3.06
2957 8919 0.909133 TACAGCTGGGCTCATGGTCA 60.909 55.000 19.93 0.00 36.40 4.02
2960 8922 1.147824 CCTACAGCTGGGCTCATGG 59.852 63.158 19.93 5.18 36.40 3.66
2961 8923 0.763652 ATCCTACAGCTGGGCTCATG 59.236 55.000 19.93 0.00 36.40 3.07
2962 8924 2.405618 TATCCTACAGCTGGGCTCAT 57.594 50.000 19.93 5.72 36.40 2.90
2963 8925 2.174685 TTATCCTACAGCTGGGCTCA 57.825 50.000 19.93 0.00 36.40 4.26
2964 8926 4.081917 GTCTATTATCCTACAGCTGGGCTC 60.082 50.000 19.93 0.00 36.40 4.70
2965 8927 3.835395 GTCTATTATCCTACAGCTGGGCT 59.165 47.826 19.93 4.58 40.77 5.19
2966 8928 3.578716 TGTCTATTATCCTACAGCTGGGC 59.421 47.826 19.93 0.00 0.00 5.36
2967 8929 5.808366 TTGTCTATTATCCTACAGCTGGG 57.192 43.478 19.93 10.84 0.00 4.45
2968 8930 7.179338 ACCTATTGTCTATTATCCTACAGCTGG 59.821 40.741 19.93 0.00 0.00 4.85
2969 8931 8.128322 ACCTATTGTCTATTATCCTACAGCTG 57.872 38.462 13.48 13.48 0.00 4.24
3014 9573 6.691754 TTGCTTCTGATTCTTGTGTTGTAA 57.308 33.333 0.00 0.00 0.00 2.41
3028 9673 0.603707 CGCCAGGTCTTTGCTTCTGA 60.604 55.000 0.00 0.00 0.00 3.27
3031 9676 1.135575 CATTCGCCAGGTCTTTGCTTC 60.136 52.381 0.00 0.00 0.00 3.86
3037 9682 4.331968 TGTTTTATCATTCGCCAGGTCTT 58.668 39.130 0.00 0.00 0.00 3.01
3042 9687 8.755018 GGATTTAAATGTTTTATCATTCGCCAG 58.245 33.333 5.17 0.00 37.09 4.85
3044 9689 8.641499 TGGATTTAAATGTTTTATCATTCGCC 57.359 30.769 5.17 0.00 37.09 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.