Multiple sequence alignment - TraesCS1A01G078300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G078300 chr1A 100.000 2483 0 0 1 2483 61029089 61026607 0.000000e+00 4586.0
1 TraesCS1A01G078300 chr1A 100.000 1303 0 0 2724 4026 61026366 61025064 0.000000e+00 2407.0
2 TraesCS1A01G078300 chr1A 97.898 333 7 0 3694 4026 61261254 61260922 9.700000e-161 577.0
3 TraesCS1A01G078300 chr1A 93.443 305 20 0 3349 3653 61269808 61269504 1.710000e-123 453.0
4 TraesCS1A01G078300 chr1A 98.413 63 1 0 3640 3702 61262899 61262837 1.180000e-20 111.0
5 TraesCS1A01G078300 chr6A 96.721 1647 30 3 40 1675 491034542 491032909 0.000000e+00 2721.0
6 TraesCS1A01G078300 chr6A 95.800 500 19 2 2763 3260 491032366 491031867 0.000000e+00 806.0
7 TraesCS1A01G078300 chr6A 99.310 145 1 0 2010 2154 491032905 491032761 3.090000e-66 263.0
8 TraesCS1A01G078300 chr6A 97.980 99 2 0 2351 2449 491032758 491032660 5.350000e-39 172.0
9 TraesCS1A01G078300 chr6A 87.705 122 13 2 1 121 491034610 491034490 1.510000e-29 141.0
10 TraesCS1A01G078300 chr5A 97.328 1160 20 1 40 1188 650682232 650683391 0.000000e+00 1960.0
11 TraesCS1A01G078300 chr5A 99.187 615 5 0 1869 2483 650683950 650684564 0.000000e+00 1109.0
12 TraesCS1A01G078300 chr5A 97.321 560 14 1 1243 1802 650683390 650683948 0.000000e+00 950.0
13 TraesCS1A01G078300 chr5A 96.047 506 19 1 2756 3260 650684943 650685448 0.000000e+00 822.0
14 TraesCS1A01G078300 chr5A 91.349 289 22 2 2105 2393 414776522 414776237 3.770000e-105 392.0
15 TraesCS1A01G078300 chr5A 90.055 181 17 1 2725 2905 13089053 13089232 2.420000e-57 233.0
16 TraesCS1A01G078300 chr5A 100.000 85 0 0 1 85 650682164 650682248 1.500000e-34 158.0
17 TraesCS1A01G078300 chr5A 94.318 88 5 0 3262 3349 74492860 74492773 7.020000e-28 135.0
18 TraesCS1A01G078300 chr4A 98.105 950 17 1 40 988 589665577 589666526 0.000000e+00 1653.0
19 TraesCS1A01G078300 chr4A 98.389 807 12 1 1677 2483 589667293 589668098 0.000000e+00 1417.0
20 TraesCS1A01G078300 chr4A 98.024 658 11 1 1025 1680 589666514 589667171 0.000000e+00 1142.0
21 TraesCS1A01G078300 chr4A 95.717 467 18 1 2798 3264 589668518 589668982 0.000000e+00 750.0
22 TraesCS1A01G078300 chr4A 98.824 85 1 0 1 85 589665509 589665593 6.970000e-33 152.0
23 TraesCS1A01G078300 chr4A 96.875 32 1 0 1376 1407 598588767 598588736 2.000000e-03 54.7
24 TraesCS1A01G078300 chr1B 94.544 1008 45 4 1483 2483 9638302 9639306 0.000000e+00 1548.0
25 TraesCS1A01G078300 chr1B 91.260 778 60 6 569 1343 13517301 13516529 0.000000e+00 1053.0
26 TraesCS1A01G078300 chr1B 90.986 588 45 6 1896 2483 13516531 13515952 0.000000e+00 785.0
27 TraesCS1A01G078300 chr1B 83.471 605 61 16 3431 4018 100565273 100564691 9.910000e-146 527.0
28 TraesCS1A01G078300 chr1B 91.758 364 26 3 1118 1479 9637647 9638008 1.670000e-138 503.0
29 TraesCS1A01G078300 chr1B 84.292 452 46 10 3588 4026 100539341 100538902 6.220000e-113 418.0
30 TraesCS1A01G078300 chr1B 91.176 272 24 0 2729 3000 9639448 9639719 1.770000e-98 370.0
31 TraesCS1A01G078300 chr1B 87.879 297 26 7 18 306 9637357 9637651 1.390000e-89 340.0
32 TraesCS1A01G078300 chr1B 83.735 166 25 2 1 165 9637257 9637421 5.390000e-34 156.0
33 TraesCS1A01G078300 chr1B 94.318 88 5 0 3262 3349 578055618 578055531 7.020000e-28 135.0
34 TraesCS1A01G078300 chr1B 94.253 87 5 0 3262 3348 123343928 123343842 2.520000e-27 134.0
35 TraesCS1A01G078300 chr1B 93.407 91 5 1 3262 3352 624805019 624804930 2.520000e-27 134.0
36 TraesCS1A01G078300 chr1B 93.939 66 4 0 40 105 9637354 9637419 2.560000e-17 100.0
37 TraesCS1A01G078300 chr1D 87.939 456 46 6 3431 3884 62935351 62934903 2.760000e-146 529.0
38 TraesCS1A01G078300 chr1D 95.349 86 4 0 3264 3349 436022287 436022202 1.950000e-28 137.0
39 TraesCS1A01G078300 chr7A 85.450 433 47 11 2831 3260 28837409 28837828 1.720000e-118 436.0
40 TraesCS1A01G078300 chr7A 90.909 330 23 3 2932 3260 28948675 28948998 1.720000e-118 436.0
41 TraesCS1A01G078300 chr7A 90.909 330 23 3 2932 3260 29001086 29001409 1.720000e-118 436.0
42 TraesCS1A01G078300 chr7A 90.606 330 24 3 2932 3260 28878683 28879006 7.990000e-117 431.0
43 TraesCS1A01G078300 chr7A 92.265 181 13 1 2725 2905 29000838 29001017 5.160000e-64 255.0
44 TraesCS1A01G078300 chr7A 91.209 182 14 2 2725 2905 28907333 28907513 3.110000e-61 246.0
45 TraesCS1A01G078300 chr7A 91.209 182 14 2 2725 2905 28948426 28948606 3.110000e-61 246.0
46 TraesCS1A01G078300 chr7A 90.110 182 16 2 2725 2905 28878434 28878614 6.730000e-58 235.0
47 TraesCS1A01G078300 chrUn 90.303 330 25 3 2932 3260 284058434 284058757 3.720000e-115 425.0
48 TraesCS1A01G078300 chrUn 90.303 330 25 3 2932 3260 284066854 284066531 3.720000e-115 425.0
49 TraesCS1A01G078300 chr5B 92.734 289 20 1 2105 2393 369616969 369617256 2.240000e-112 416.0
50 TraesCS1A01G078300 chr5D 92.042 289 22 1 2105 2393 319321569 319321856 4.850000e-109 405.0
51 TraesCS1A01G078300 chr3B 91.209 182 14 2 2725 2905 60385586 60385406 3.110000e-61 246.0
52 TraesCS1A01G078300 chr4D 95.402 87 4 0 3262 3348 39396034 39396120 5.430000e-29 139.0
53 TraesCS1A01G078300 chr4D 81.600 125 17 6 43 164 85834068 85834189 9.210000e-17 99.0
54 TraesCS1A01G078300 chr4D 75.000 180 29 7 39 204 85834122 85834299 7.220000e-08 69.4
55 TraesCS1A01G078300 chr4B 95.402 87 4 0 3262 3348 649400594 649400508 5.430000e-29 139.0
56 TraesCS1A01G078300 chr3A 95.402 87 4 0 3262 3348 681557622 681557708 5.430000e-29 139.0
57 TraesCS1A01G078300 chr3A 100.000 36 0 0 1750 1785 61239200 61239235 2.600000e-07 67.6
58 TraesCS1A01G078300 chr3A 100.000 36 0 0 1750 1785 480124741 480124706 2.600000e-07 67.6
59 TraesCS1A01G078300 chr6B 92.391 92 6 1 3258 3348 698176485 698176394 3.270000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G078300 chr1A 61025064 61029089 4025 True 3496.500000 4586 100.000000 1 4026 2 chr1A.!!$R2 4025
1 TraesCS1A01G078300 chr1A 61260922 61262899 1977 True 344.000000 577 98.155500 3640 4026 2 chr1A.!!$R3 386
2 TraesCS1A01G078300 chr6A 491031867 491034610 2743 True 820.600000 2721 95.503200 1 3260 5 chr6A.!!$R1 3259
3 TraesCS1A01G078300 chr5A 650682164 650685448 3284 False 999.800000 1960 97.976600 1 3260 5 chr5A.!!$F2 3259
4 TraesCS1A01G078300 chr4A 589665509 589668982 3473 False 1022.800000 1653 97.811800 1 3264 5 chr4A.!!$F1 3263
5 TraesCS1A01G078300 chr1B 13515952 13517301 1349 True 919.000000 1053 91.123000 569 2483 2 chr1B.!!$R6 1914
6 TraesCS1A01G078300 chr1B 100564691 100565273 582 True 527.000000 527 83.471000 3431 4018 1 chr1B.!!$R2 587
7 TraesCS1A01G078300 chr1B 9637257 9639719 2462 False 502.833333 1548 90.505167 1 3000 6 chr1B.!!$F1 2999
8 TraesCS1A01G078300 chr7A 29000838 29001409 571 False 345.500000 436 91.587000 2725 3260 2 chr7A.!!$F5 535
9 TraesCS1A01G078300 chr7A 28948426 28948998 572 False 341.000000 436 91.059000 2725 3260 2 chr7A.!!$F4 535
10 TraesCS1A01G078300 chr7A 28878434 28879006 572 False 333.000000 431 90.358000 2725 3260 2 chr7A.!!$F3 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
942 1056 0.616371 TCACCTAACCATCCCAACCG 59.384 55.000 0.0 0.0 0.00 4.44 F
1821 2412 3.473113 ACCTTTCAACCAATAGGGCAT 57.527 42.857 0.0 0.0 42.05 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2914 3636 1.823169 GCCCACCACAGTCCTTCGTA 61.823 60.0 0.0 0.0 0.00 3.43 R
3530 4281 0.100503 GCGGCATTTTAAGCGGATGT 59.899 50.0 0.0 0.0 34.65 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 209 4.036734 ACAAGTAACGGTCTTACTCGTTCA 59.963 41.667 4.38 0.00 44.87 3.18
691 804 0.627451 TGGAGAAAGGCCAGCATCAT 59.373 50.000 5.01 0.00 0.00 2.45
736 849 3.810941 ACAATCAAACCAAATTGCAGCTG 59.189 39.130 10.11 10.11 36.54 4.24
839 953 0.667993 AGAAACCAACACATGCACCG 59.332 50.000 0.00 0.00 0.00 4.94
919 1033 2.689691 GGTGGGCTGGGGATAGCAA 61.690 63.158 0.00 0.00 45.46 3.91
942 1056 0.616371 TCACCTAACCATCCCAACCG 59.384 55.000 0.00 0.00 0.00 4.44
1429 1603 6.069323 TGGTCTACAAATCTAAAATGGGCCTA 60.069 38.462 4.53 0.00 0.00 3.93
1685 2276 7.364522 TGAAGCACAATCAACTACTATGAAC 57.635 36.000 0.00 0.00 0.00 3.18
1748 2339 8.141298 TCTGGTACCATGAATTACAACTAAGA 57.859 34.615 16.75 0.00 0.00 2.10
1821 2412 3.473113 ACCTTTCAACCAATAGGGCAT 57.527 42.857 0.00 0.00 42.05 4.40
2850 3555 4.351054 CGGCAAGGAAGGGCTGGT 62.351 66.667 0.00 0.00 32.75 4.00
2973 3720 3.998672 GGAACCGGCAGTCCACGA 61.999 66.667 13.25 0.00 0.00 4.35
2974 3721 2.264794 GAACCGGCAGTCCACGAT 59.735 61.111 0.00 0.00 0.00 3.73
3143 3892 6.544564 CACTAAAATTATGTACCGGTCCCATT 59.455 38.462 20.91 9.24 0.00 3.16
3244 3995 1.063469 CGGCTCGTAAAATCGCCAATT 59.937 47.619 0.00 0.00 42.59 2.32
3260 4011 6.174760 TCGCCAATTACCTTAACAGTTGTAT 58.825 36.000 0.00 0.00 0.00 2.29
3311 4062 7.919385 ATTAGGGTGATAAAATTGGCAATCT 57.081 32.000 14.04 6.60 0.00 2.40
3313 4064 6.966534 AGGGTGATAAAATTGGCAATCTAG 57.033 37.500 14.04 0.00 0.00 2.43
3314 4065 6.672593 AGGGTGATAAAATTGGCAATCTAGA 58.327 36.000 14.04 0.00 0.00 2.43
3315 4066 7.300658 AGGGTGATAAAATTGGCAATCTAGAT 58.699 34.615 14.04 0.00 0.00 1.98
3316 4067 8.448008 AGGGTGATAAAATTGGCAATCTAGATA 58.552 33.333 14.04 3.41 0.00 1.98
3317 4068 9.247861 GGGTGATAAAATTGGCAATCTAGATAT 57.752 33.333 14.04 7.81 0.00 1.63
3321 4072 9.922305 GATAAAATTGGCAATCTAGATATACGC 57.078 33.333 14.04 6.72 0.00 4.42
3322 4073 6.408858 AAATTGGCAATCTAGATATACGCG 57.591 37.500 14.04 3.53 0.00 6.01
3323 4074 2.876091 TGGCAATCTAGATATACGCGC 58.124 47.619 5.73 0.00 0.00 6.86
3324 4075 2.230266 TGGCAATCTAGATATACGCGCA 59.770 45.455 5.73 0.00 0.00 6.09
3325 4076 2.854777 GGCAATCTAGATATACGCGCAG 59.145 50.000 5.73 2.42 0.00 5.18
3326 4077 2.854777 GCAATCTAGATATACGCGCAGG 59.145 50.000 5.73 0.00 0.00 4.85
3327 4078 3.427638 GCAATCTAGATATACGCGCAGGA 60.428 47.826 5.73 0.00 0.00 3.86
3328 4079 4.099120 CAATCTAGATATACGCGCAGGAC 58.901 47.826 5.73 0.00 0.00 3.85
3329 4080 3.055209 TCTAGATATACGCGCAGGACT 57.945 47.619 5.73 3.27 0.00 3.85
3330 4081 3.409570 TCTAGATATACGCGCAGGACTT 58.590 45.455 5.73 0.00 0.00 3.01
3331 4082 2.423926 AGATATACGCGCAGGACTTG 57.576 50.000 5.73 0.00 0.00 3.16
3332 4083 1.681793 AGATATACGCGCAGGACTTGT 59.318 47.619 5.73 0.00 0.00 3.16
3333 4084 2.882761 AGATATACGCGCAGGACTTGTA 59.117 45.455 5.73 0.00 0.00 2.41
3334 4085 3.317149 AGATATACGCGCAGGACTTGTAA 59.683 43.478 5.73 0.00 0.00 2.41
3335 4086 2.373540 ATACGCGCAGGACTTGTAAA 57.626 45.000 5.73 0.00 0.00 2.01
3336 4087 2.373540 TACGCGCAGGACTTGTAAAT 57.626 45.000 5.73 0.00 0.00 1.40
3337 4088 1.519408 ACGCGCAGGACTTGTAAATT 58.481 45.000 5.73 0.00 0.00 1.82
3338 4089 1.196808 ACGCGCAGGACTTGTAAATTG 59.803 47.619 5.73 0.00 0.00 2.32
3339 4090 1.463056 CGCGCAGGACTTGTAAATTGA 59.537 47.619 8.75 0.00 0.00 2.57
3340 4091 2.095969 CGCGCAGGACTTGTAAATTGAA 60.096 45.455 8.75 0.00 0.00 2.69
3341 4092 3.608241 CGCGCAGGACTTGTAAATTGAAA 60.608 43.478 8.75 0.00 0.00 2.69
3342 4093 4.485163 GCGCAGGACTTGTAAATTGAAAT 58.515 39.130 0.30 0.00 0.00 2.17
3343 4094 4.324402 GCGCAGGACTTGTAAATTGAAATG 59.676 41.667 0.30 0.00 0.00 2.32
3344 4095 5.698832 CGCAGGACTTGTAAATTGAAATGA 58.301 37.500 0.00 0.00 0.00 2.57
3345 4096 6.148948 CGCAGGACTTGTAAATTGAAATGAA 58.851 36.000 0.00 0.00 0.00 2.57
3346 4097 6.306356 CGCAGGACTTGTAAATTGAAATGAAG 59.694 38.462 0.00 0.00 0.00 3.02
3347 4098 6.587608 GCAGGACTTGTAAATTGAAATGAAGG 59.412 38.462 0.00 0.00 0.00 3.46
3348 4099 7.092716 CAGGACTTGTAAATTGAAATGAAGGG 58.907 38.462 0.00 0.00 0.00 3.95
3349 4100 6.782494 AGGACTTGTAAATTGAAATGAAGGGT 59.218 34.615 0.00 0.00 0.00 4.34
3350 4101 7.947890 AGGACTTGTAAATTGAAATGAAGGGTA 59.052 33.333 0.00 0.00 0.00 3.69
3351 4102 8.581578 GGACTTGTAAATTGAAATGAAGGGTAA 58.418 33.333 0.00 0.00 0.00 2.85
3352 4103 9.406828 GACTTGTAAATTGAAATGAAGGGTAAC 57.593 33.333 0.00 0.00 0.00 2.50
3353 4104 8.919145 ACTTGTAAATTGAAATGAAGGGTAACA 58.081 29.630 0.00 0.00 39.74 2.41
3354 4105 9.757227 CTTGTAAATTGAAATGAAGGGTAACAA 57.243 29.630 0.00 0.00 39.74 2.83
3360 4111 9.492973 AATTGAAATGAAGGGTAACAAATCTTG 57.507 29.630 0.00 0.00 39.74 3.02
3362 4113 7.432869 TGAAATGAAGGGTAACAAATCTTGTG 58.567 34.615 0.00 0.00 44.59 3.33
3363 4114 7.286546 TGAAATGAAGGGTAACAAATCTTGTGA 59.713 33.333 0.00 0.00 44.59 3.58
3364 4115 7.781324 AATGAAGGGTAACAAATCTTGTGAT 57.219 32.000 0.00 0.00 44.59 3.06
3365 4116 7.781324 ATGAAGGGTAACAAATCTTGTGATT 57.219 32.000 0.00 0.00 44.59 2.57
3366 4117 8.877864 ATGAAGGGTAACAAATCTTGTGATTA 57.122 30.769 0.00 0.00 44.59 1.75
3367 4118 8.877864 TGAAGGGTAACAAATCTTGTGATTAT 57.122 30.769 0.00 0.00 44.59 1.28
3368 4119 8.739039 TGAAGGGTAACAAATCTTGTGATTATG 58.261 33.333 0.00 0.00 44.59 1.90
3369 4120 8.877864 AAGGGTAACAAATCTTGTGATTATGA 57.122 30.769 0.00 0.00 44.59 2.15
3370 4121 8.511604 AGGGTAACAAATCTTGTGATTATGAG 57.488 34.615 0.00 0.00 44.59 2.90
3371 4122 8.328758 AGGGTAACAAATCTTGTGATTATGAGA 58.671 33.333 0.00 0.00 44.59 3.27
3372 4123 9.125026 GGGTAACAAATCTTGTGATTATGAGAT 57.875 33.333 0.00 0.00 44.59 2.75
3374 4125 9.855361 GTAACAAATCTTGTGATTATGAGATCG 57.145 33.333 0.00 0.00 44.59 3.69
3375 4126 8.722480 AACAAATCTTGTGATTATGAGATCGA 57.278 30.769 0.00 0.00 44.59 3.59
3376 4127 8.722480 ACAAATCTTGTGATTATGAGATCGAA 57.278 30.769 0.00 0.00 43.48 3.71
3377 4128 9.166173 ACAAATCTTGTGATTATGAGATCGAAA 57.834 29.630 0.00 0.00 43.48 3.46
3378 4129 9.992910 CAAATCTTGTGATTATGAGATCGAAAA 57.007 29.630 0.00 0.00 41.62 2.29
3394 4145 9.307451 GAGATCGAAAATTTATTGATAAGTCGC 57.693 33.333 0.00 0.00 0.00 5.19
3395 4146 8.283291 AGATCGAAAATTTATTGATAAGTCGCC 58.717 33.333 0.00 0.00 0.00 5.54
3396 4147 7.548196 TCGAAAATTTATTGATAAGTCGCCT 57.452 32.000 0.00 0.00 0.00 5.52
3397 4148 7.406553 TCGAAAATTTATTGATAAGTCGCCTG 58.593 34.615 0.00 0.00 0.00 4.85
3398 4149 6.140737 CGAAAATTTATTGATAAGTCGCCTGC 59.859 38.462 0.00 0.00 0.00 4.85
3399 4150 6.699575 AAATTTATTGATAAGTCGCCTGCT 57.300 33.333 0.00 0.00 0.00 4.24
3400 4151 6.699575 AATTTATTGATAAGTCGCCTGCTT 57.300 33.333 0.00 0.00 0.00 3.91
3401 4152 6.699575 ATTTATTGATAAGTCGCCTGCTTT 57.300 33.333 0.00 0.00 0.00 3.51
3402 4153 5.734855 TTATTGATAAGTCGCCTGCTTTC 57.265 39.130 0.00 0.00 0.00 2.62
3403 4154 3.334583 TTGATAAGTCGCCTGCTTTCT 57.665 42.857 0.00 0.00 0.00 2.52
3404 4155 3.334583 TGATAAGTCGCCTGCTTTCTT 57.665 42.857 0.00 0.00 0.00 2.52
3405 4156 3.674997 TGATAAGTCGCCTGCTTTCTTT 58.325 40.909 0.00 0.00 0.00 2.52
3406 4157 4.827692 TGATAAGTCGCCTGCTTTCTTTA 58.172 39.130 0.00 0.00 0.00 1.85
3407 4158 4.870426 TGATAAGTCGCCTGCTTTCTTTAG 59.130 41.667 0.00 0.00 0.00 1.85
3408 4159 2.100605 AGTCGCCTGCTTTCTTTAGG 57.899 50.000 0.00 0.00 34.67 2.69
3409 4160 1.348036 AGTCGCCTGCTTTCTTTAGGT 59.652 47.619 0.00 0.00 34.06 3.08
3410 4161 2.565834 AGTCGCCTGCTTTCTTTAGGTA 59.434 45.455 0.00 0.00 34.06 3.08
3411 4162 3.007614 AGTCGCCTGCTTTCTTTAGGTAA 59.992 43.478 0.00 0.00 34.06 2.85
3412 4163 3.371285 GTCGCCTGCTTTCTTTAGGTAAG 59.629 47.826 0.00 0.00 34.06 2.34
3413 4164 3.007614 TCGCCTGCTTTCTTTAGGTAAGT 59.992 43.478 0.00 0.00 35.28 2.24
3414 4165 3.371285 CGCCTGCTTTCTTTAGGTAAGTC 59.629 47.826 0.00 0.00 35.28 3.01
3415 4166 3.371285 GCCTGCTTTCTTTAGGTAAGTCG 59.629 47.826 0.00 0.00 35.28 4.18
3416 4167 4.817517 CCTGCTTTCTTTAGGTAAGTCGA 58.182 43.478 0.00 0.00 35.28 4.20
3417 4168 5.235516 CCTGCTTTCTTTAGGTAAGTCGAA 58.764 41.667 0.00 0.00 35.28 3.71
3418 4169 5.875359 CCTGCTTTCTTTAGGTAAGTCGAAT 59.125 40.000 0.00 0.00 35.28 3.34
3419 4170 6.371825 CCTGCTTTCTTTAGGTAAGTCGAATT 59.628 38.462 2.72 2.72 35.28 2.17
3420 4171 7.094762 CCTGCTTTCTTTAGGTAAGTCGAATTT 60.095 37.037 2.37 0.00 35.28 1.82
3421 4172 8.161699 TGCTTTCTTTAGGTAAGTCGAATTTT 57.838 30.769 2.37 0.00 35.28 1.82
3422 4173 8.626526 TGCTTTCTTTAGGTAAGTCGAATTTTT 58.373 29.630 2.37 0.00 35.28 1.94
3423 4174 8.902735 GCTTTCTTTAGGTAAGTCGAATTTTTG 58.097 33.333 2.37 0.00 35.28 2.44
3424 4175 9.394477 CTTTCTTTAGGTAAGTCGAATTTTTGG 57.606 33.333 2.37 0.00 35.28 3.28
3425 4176 8.680039 TTCTTTAGGTAAGTCGAATTTTTGGA 57.320 30.769 2.37 0.00 35.28 3.53
3426 4177 8.857694 TCTTTAGGTAAGTCGAATTTTTGGAT 57.142 30.769 2.37 0.00 35.28 3.41
3427 4178 9.947433 TCTTTAGGTAAGTCGAATTTTTGGATA 57.053 29.630 2.37 0.00 35.28 2.59
3430 4181 7.027778 AGGTAAGTCGAATTTTTGGATATGC 57.972 36.000 2.37 0.00 0.00 3.14
3431 4182 6.039382 AGGTAAGTCGAATTTTTGGATATGCC 59.961 38.462 2.37 0.00 37.10 4.40
3432 4183 4.552166 AGTCGAATTTTTGGATATGCCG 57.448 40.909 0.00 0.00 40.66 5.69
3433 4184 3.945285 AGTCGAATTTTTGGATATGCCGT 59.055 39.130 0.00 0.00 40.66 5.68
3434 4185 4.398044 AGTCGAATTTTTGGATATGCCGTT 59.602 37.500 0.00 0.00 40.66 4.44
3435 4186 4.733405 GTCGAATTTTTGGATATGCCGTTC 59.267 41.667 0.00 0.00 40.66 3.95
3436 4187 3.723764 CGAATTTTTGGATATGCCGTTCG 59.276 43.478 0.00 0.00 40.66 3.95
3437 4188 4.668289 GAATTTTTGGATATGCCGTTCGT 58.332 39.130 0.00 0.00 40.66 3.85
3438 4189 3.750639 TTTTTGGATATGCCGTTCGTC 57.249 42.857 0.00 0.00 40.66 4.20
3439 4190 1.658994 TTTGGATATGCCGTTCGTCC 58.341 50.000 0.00 0.00 40.66 4.79
3440 4191 0.828022 TTGGATATGCCGTTCGTCCT 59.172 50.000 0.00 0.00 40.66 3.85
3441 4192 0.387929 TGGATATGCCGTTCGTCCTC 59.612 55.000 0.00 0.00 40.66 3.71
3442 4193 0.319641 GGATATGCCGTTCGTCCTCC 60.320 60.000 0.00 0.00 0.00 4.30
3443 4194 0.663568 GATATGCCGTTCGTCCTCCG 60.664 60.000 0.00 0.00 38.13 4.63
3444 4195 2.083835 ATATGCCGTTCGTCCTCCGG 62.084 60.000 0.00 0.00 44.46 5.14
3446 4197 3.443045 GCCGTTCGTCCTCCGGTA 61.443 66.667 0.00 0.00 43.56 4.02
3471 4222 4.081030 CCGCTCGCAGTGCTGTTG 62.081 66.667 14.33 0.00 45.74 3.33
3504 4255 1.522569 GGCACTGCCTAATCCGAGT 59.477 57.895 13.28 0.00 46.69 4.18
3529 4280 6.326323 TGGGAATCAAATATTAAAAGCCCCTC 59.674 38.462 11.10 0.00 0.00 4.30
3530 4281 6.326323 GGGAATCAAATATTAAAAGCCCCTCA 59.674 38.462 0.00 0.00 0.00 3.86
3532 4283 7.147742 GGAATCAAATATTAAAAGCCCCTCACA 60.148 37.037 0.00 0.00 0.00 3.58
3535 4286 6.323739 TCAAATATTAAAAGCCCCTCACATCC 59.676 38.462 0.00 0.00 0.00 3.51
3540 4291 1.271840 AAGCCCCTCACATCCGCTTA 61.272 55.000 0.00 0.00 37.98 3.09
3542 4293 0.393808 GCCCCTCACATCCGCTTAAA 60.394 55.000 0.00 0.00 0.00 1.52
3568 4319 2.959071 GCGAGCTGCATCGTCTCC 60.959 66.667 17.94 3.50 44.53 3.71
3569 4320 2.653448 CGAGCTGCATCGTCTCCG 60.653 66.667 1.02 0.00 37.91 4.63
3578 4329 4.405671 TCGTCTCCGACTCCGCCT 62.406 66.667 0.00 0.00 38.40 5.52
3579 4330 3.878519 CGTCTCCGACTCCGCCTC 61.879 72.222 0.00 0.00 35.63 4.70
3580 4331 3.519930 GTCTCCGACTCCGCCTCC 61.520 72.222 0.00 0.00 0.00 4.30
3594 4345 2.750350 CTCCGCCTTGTTCCTGGT 59.250 61.111 0.00 0.00 0.00 4.00
3608 4359 0.613777 CCTGGTTCGGCCTTTAGAGT 59.386 55.000 0.00 0.00 38.35 3.24
3613 4364 1.128136 GTTCGGCCTTTAGAGTTTCGC 59.872 52.381 0.00 0.00 0.00 4.70
3614 4365 0.390735 TCGGCCTTTAGAGTTTCGCC 60.391 55.000 0.00 0.00 0.00 5.54
3617 4368 1.000145 GCCTTTAGAGTTTCGCCTCG 59.000 55.000 0.00 0.00 36.56 4.63
3621 4372 1.250328 TTAGAGTTTCGCCTCGTCCA 58.750 50.000 0.00 0.00 36.56 4.02
3625 4376 1.925185 GAGTTTCGCCTCGTCCAATAC 59.075 52.381 0.00 0.00 0.00 1.89
3635 4386 4.620803 GCCTCGTCCAATACTTTCTTCTCA 60.621 45.833 0.00 0.00 0.00 3.27
3637 4388 5.462530 TCGTCCAATACTTTCTTCTCACA 57.537 39.130 0.00 0.00 0.00 3.58
3653 4404 8.463930 TCTTCTCACACAAAATTGATTTACCT 57.536 30.769 0.00 0.00 0.00 3.08
3742 6085 7.556844 ACTGATGTTTCTCCGTACATCTATTT 58.443 34.615 14.19 0.00 46.79 1.40
3868 6225 5.812642 AGTGTCTGTAATTATCTTCGCCAAG 59.187 40.000 0.00 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 209 8.865090 ACAACTAAGATCTATAGTAGCAATGCT 58.135 33.333 13.92 13.92 43.41 3.79
691 804 8.134202 TGTATGTCCTCTCTTACTTTCATTGA 57.866 34.615 0.00 0.00 0.00 2.57
919 1033 4.445735 CGGTTGGGATGGTTAGGTGAATAT 60.446 45.833 0.00 0.00 0.00 1.28
1009 1123 3.403968 TCGATTGACCGTCCAAAATTGA 58.596 40.909 0.00 0.00 0.00 2.57
1311 1483 3.872603 ACACACAAGGAGGCGGCA 61.873 61.111 13.08 0.00 0.00 5.69
1685 2276 7.035612 GCTTTTATGATCCCTGTTTTTAGTGG 58.964 38.462 0.00 0.00 0.00 4.00
1748 2339 7.742767 TGTAGGAATCTCATGATGATGATTGT 58.257 34.615 18.27 11.30 37.97 2.71
1821 2412 5.710099 CCTTTGTAGGAGCAATCCTTTTACA 59.290 40.000 1.45 0.00 45.05 2.41
2914 3636 1.823169 GCCCACCACAGTCCTTCGTA 61.823 60.000 0.00 0.00 0.00 3.43
2951 3698 3.003763 GACTGCCGGTTCCTCCCT 61.004 66.667 1.90 0.00 0.00 4.20
3285 4036 9.605951 AGATTGCCAATTTTATCACCCTAATAT 57.394 29.630 0.00 0.00 0.00 1.28
3287 4038 7.919385 AGATTGCCAATTTTATCACCCTAAT 57.081 32.000 0.00 0.00 0.00 1.73
3288 4039 8.278639 TCTAGATTGCCAATTTTATCACCCTAA 58.721 33.333 0.00 0.00 0.00 2.69
3289 4040 7.811282 TCTAGATTGCCAATTTTATCACCCTA 58.189 34.615 0.00 0.00 0.00 3.53
3290 4041 6.672593 TCTAGATTGCCAATTTTATCACCCT 58.327 36.000 0.00 0.00 0.00 4.34
3291 4042 6.959639 TCTAGATTGCCAATTTTATCACCC 57.040 37.500 0.00 0.00 0.00 4.61
3295 4046 9.922305 GCGTATATCTAGATTGCCAATTTTATC 57.078 33.333 11.25 0.00 0.00 1.75
3296 4047 8.604035 CGCGTATATCTAGATTGCCAATTTTAT 58.396 33.333 11.25 0.00 0.00 1.40
3297 4048 7.412563 GCGCGTATATCTAGATTGCCAATTTTA 60.413 37.037 11.25 0.00 0.00 1.52
3298 4049 6.620733 GCGCGTATATCTAGATTGCCAATTTT 60.621 38.462 11.25 0.00 0.00 1.82
3299 4050 5.163854 GCGCGTATATCTAGATTGCCAATTT 60.164 40.000 11.25 0.00 0.00 1.82
3300 4051 4.330074 GCGCGTATATCTAGATTGCCAATT 59.670 41.667 11.25 0.00 0.00 2.32
3301 4052 3.865745 GCGCGTATATCTAGATTGCCAAT 59.134 43.478 11.25 0.18 0.00 3.16
3302 4053 3.250744 GCGCGTATATCTAGATTGCCAA 58.749 45.455 11.25 0.00 0.00 4.52
3303 4054 2.230266 TGCGCGTATATCTAGATTGCCA 59.770 45.455 11.25 7.90 0.00 4.92
3304 4055 2.854777 CTGCGCGTATATCTAGATTGCC 59.145 50.000 11.25 5.76 0.00 4.52
3305 4056 2.854777 CCTGCGCGTATATCTAGATTGC 59.145 50.000 11.25 9.33 0.00 3.56
3306 4057 4.099120 GTCCTGCGCGTATATCTAGATTG 58.901 47.826 11.25 0.34 0.00 2.67
3307 4058 4.011023 AGTCCTGCGCGTATATCTAGATT 58.989 43.478 11.25 1.81 0.00 2.40
3308 4059 3.611970 AGTCCTGCGCGTATATCTAGAT 58.388 45.455 10.73 10.73 0.00 1.98
3309 4060 3.055209 AGTCCTGCGCGTATATCTAGA 57.945 47.619 8.43 0.00 0.00 2.43
3310 4061 3.058155 ACAAGTCCTGCGCGTATATCTAG 60.058 47.826 8.43 0.00 0.00 2.43
3311 4062 2.882761 ACAAGTCCTGCGCGTATATCTA 59.117 45.455 8.43 0.00 0.00 1.98
3312 4063 1.681793 ACAAGTCCTGCGCGTATATCT 59.318 47.619 8.43 0.00 0.00 1.98
3313 4064 2.135664 ACAAGTCCTGCGCGTATATC 57.864 50.000 8.43 0.00 0.00 1.63
3314 4065 3.720949 TTACAAGTCCTGCGCGTATAT 57.279 42.857 8.43 0.00 0.00 0.86
3315 4066 3.507103 TTTACAAGTCCTGCGCGTATA 57.493 42.857 8.43 0.00 0.00 1.47
3316 4067 2.373540 TTTACAAGTCCTGCGCGTAT 57.626 45.000 8.43 0.00 0.00 3.06
3317 4068 2.373540 ATTTACAAGTCCTGCGCGTA 57.626 45.000 8.43 0.71 0.00 4.42
3318 4069 1.196808 CAATTTACAAGTCCTGCGCGT 59.803 47.619 8.43 0.00 0.00 6.01
3319 4070 1.463056 TCAATTTACAAGTCCTGCGCG 59.537 47.619 0.00 0.00 0.00 6.86
3320 4071 3.552604 TTCAATTTACAAGTCCTGCGC 57.447 42.857 0.00 0.00 0.00 6.09
3321 4072 5.698832 TCATTTCAATTTACAAGTCCTGCG 58.301 37.500 0.00 0.00 0.00 5.18
3322 4073 6.587608 CCTTCATTTCAATTTACAAGTCCTGC 59.412 38.462 0.00 0.00 0.00 4.85
3323 4074 7.092716 CCCTTCATTTCAATTTACAAGTCCTG 58.907 38.462 0.00 0.00 0.00 3.86
3324 4075 6.782494 ACCCTTCATTTCAATTTACAAGTCCT 59.218 34.615 0.00 0.00 0.00 3.85
3325 4076 6.993079 ACCCTTCATTTCAATTTACAAGTCC 58.007 36.000 0.00 0.00 0.00 3.85
3326 4077 9.406828 GTTACCCTTCATTTCAATTTACAAGTC 57.593 33.333 0.00 0.00 0.00 3.01
3327 4078 8.919145 TGTTACCCTTCATTTCAATTTACAAGT 58.081 29.630 0.00 0.00 0.00 3.16
3328 4079 9.757227 TTGTTACCCTTCATTTCAATTTACAAG 57.243 29.630 0.00 0.00 0.00 3.16
3334 4085 9.492973 CAAGATTTGTTACCCTTCATTTCAATT 57.507 29.630 0.00 0.00 0.00 2.32
3335 4086 8.650490 ACAAGATTTGTTACCCTTCATTTCAAT 58.350 29.630 0.00 0.00 42.22 2.57
3336 4087 7.925483 CACAAGATTTGTTACCCTTCATTTCAA 59.075 33.333 0.00 0.00 43.23 2.69
3337 4088 7.286546 TCACAAGATTTGTTACCCTTCATTTCA 59.713 33.333 0.00 0.00 43.23 2.69
3338 4089 7.657336 TCACAAGATTTGTTACCCTTCATTTC 58.343 34.615 0.00 0.00 43.23 2.17
3339 4090 7.595819 TCACAAGATTTGTTACCCTTCATTT 57.404 32.000 0.00 0.00 43.23 2.32
3340 4091 7.781324 ATCACAAGATTTGTTACCCTTCATT 57.219 32.000 0.00 0.00 43.23 2.57
3341 4092 7.781324 AATCACAAGATTTGTTACCCTTCAT 57.219 32.000 0.00 0.00 41.64 2.57
3342 4093 8.739039 CATAATCACAAGATTTGTTACCCTTCA 58.261 33.333 0.00 0.00 41.64 3.02
3343 4094 8.956426 TCATAATCACAAGATTTGTTACCCTTC 58.044 33.333 0.00 0.00 41.64 3.46
3344 4095 8.877864 TCATAATCACAAGATTTGTTACCCTT 57.122 30.769 0.00 0.00 41.64 3.95
3345 4096 8.328758 TCTCATAATCACAAGATTTGTTACCCT 58.671 33.333 0.00 0.00 41.64 4.34
3346 4097 8.506168 TCTCATAATCACAAGATTTGTTACCC 57.494 34.615 0.00 0.00 41.64 3.69
3348 4099 9.855361 CGATCTCATAATCACAAGATTTGTTAC 57.145 33.333 0.00 0.00 41.64 2.50
3349 4100 9.816354 TCGATCTCATAATCACAAGATTTGTTA 57.184 29.630 0.00 0.00 41.64 2.41
3350 4101 8.722480 TCGATCTCATAATCACAAGATTTGTT 57.278 30.769 0.00 0.00 41.64 2.83
3351 4102 8.722480 TTCGATCTCATAATCACAAGATTTGT 57.278 30.769 0.00 0.00 41.64 2.83
3352 4103 9.992910 TTTTCGATCTCATAATCACAAGATTTG 57.007 29.630 0.00 0.00 41.64 2.32
3368 4119 9.307451 GCGACTTATCAATAAATTTTCGATCTC 57.693 33.333 0.00 0.00 0.00 2.75
3369 4120 8.283291 GGCGACTTATCAATAAATTTTCGATCT 58.717 33.333 0.00 0.00 0.00 2.75
3370 4121 8.283291 AGGCGACTTATCAATAAATTTTCGATC 58.717 33.333 0.00 0.00 37.44 3.69
3371 4122 8.070171 CAGGCGACTTATCAATAAATTTTCGAT 58.930 33.333 0.00 0.00 40.21 3.59
3372 4123 7.406553 CAGGCGACTTATCAATAAATTTTCGA 58.593 34.615 0.00 0.00 40.21 3.71
3373 4124 6.140737 GCAGGCGACTTATCAATAAATTTTCG 59.859 38.462 0.00 0.00 40.21 3.46
3374 4125 7.196331 AGCAGGCGACTTATCAATAAATTTTC 58.804 34.615 0.00 0.00 40.21 2.29
3375 4126 7.100458 AGCAGGCGACTTATCAATAAATTTT 57.900 32.000 0.00 0.00 40.21 1.82
3376 4127 6.699575 AGCAGGCGACTTATCAATAAATTT 57.300 33.333 0.00 0.00 40.21 1.82
3377 4128 6.699575 AAGCAGGCGACTTATCAATAAATT 57.300 33.333 0.00 0.00 40.21 1.82
3378 4129 6.543831 AGAAAGCAGGCGACTTATCAATAAAT 59.456 34.615 0.00 0.00 40.21 1.40
3379 4130 5.880332 AGAAAGCAGGCGACTTATCAATAAA 59.120 36.000 0.00 0.00 40.21 1.40
3380 4131 5.428253 AGAAAGCAGGCGACTTATCAATAA 58.572 37.500 0.00 0.00 40.21 1.40
3381 4132 5.023533 AGAAAGCAGGCGACTTATCAATA 57.976 39.130 0.00 0.00 40.21 1.90
3382 4133 3.878778 AGAAAGCAGGCGACTTATCAAT 58.121 40.909 0.00 0.00 40.21 2.57
3383 4134 3.334583 AGAAAGCAGGCGACTTATCAA 57.665 42.857 0.00 0.00 40.21 2.57
3384 4135 3.334583 AAGAAAGCAGGCGACTTATCA 57.665 42.857 0.00 0.00 40.21 2.15
3385 4136 4.271291 CCTAAAGAAAGCAGGCGACTTATC 59.729 45.833 0.00 0.00 40.21 1.75
3386 4137 4.192317 CCTAAAGAAAGCAGGCGACTTAT 58.808 43.478 0.00 0.00 40.21 1.73
3387 4138 3.007614 ACCTAAAGAAAGCAGGCGACTTA 59.992 43.478 0.00 0.00 40.21 2.24
3388 4139 2.224548 ACCTAAAGAAAGCAGGCGACTT 60.225 45.455 0.00 0.00 40.21 3.01
3389 4140 1.348036 ACCTAAAGAAAGCAGGCGACT 59.652 47.619 0.00 0.00 46.44 4.18
3390 4141 1.809684 ACCTAAAGAAAGCAGGCGAC 58.190 50.000 0.00 0.00 32.31 5.19
3391 4142 3.007614 ACTTACCTAAAGAAAGCAGGCGA 59.992 43.478 0.00 0.00 38.67 5.54
3392 4143 3.335579 ACTTACCTAAAGAAAGCAGGCG 58.664 45.455 0.00 0.00 38.67 5.52
3393 4144 3.371285 CGACTTACCTAAAGAAAGCAGGC 59.629 47.826 0.00 0.00 38.67 4.85
3394 4145 4.817517 TCGACTTACCTAAAGAAAGCAGG 58.182 43.478 0.00 0.00 38.67 4.85
3395 4146 6.969828 ATTCGACTTACCTAAAGAAAGCAG 57.030 37.500 0.00 0.00 38.67 4.24
3396 4147 7.739498 AAATTCGACTTACCTAAAGAAAGCA 57.261 32.000 0.00 0.00 38.67 3.91
3397 4148 8.902735 CAAAAATTCGACTTACCTAAAGAAAGC 58.097 33.333 0.00 0.00 38.67 3.51
3398 4149 9.394477 CCAAAAATTCGACTTACCTAAAGAAAG 57.606 33.333 0.00 0.00 38.67 2.62
3399 4150 9.122779 TCCAAAAATTCGACTTACCTAAAGAAA 57.877 29.630 0.00 0.00 38.67 2.52
3400 4151 8.680039 TCCAAAAATTCGACTTACCTAAAGAA 57.320 30.769 0.00 0.00 38.67 2.52
3401 4152 8.857694 ATCCAAAAATTCGACTTACCTAAAGA 57.142 30.769 0.00 0.00 38.67 2.52
3404 4155 8.617809 GCATATCCAAAAATTCGACTTACCTAA 58.382 33.333 0.00 0.00 0.00 2.69
3405 4156 7.227910 GGCATATCCAAAAATTCGACTTACCTA 59.772 37.037 0.00 0.00 34.01 3.08
3406 4157 6.039382 GGCATATCCAAAAATTCGACTTACCT 59.961 38.462 0.00 0.00 34.01 3.08
3407 4158 6.206498 GGCATATCCAAAAATTCGACTTACC 58.794 40.000 0.00 0.00 34.01 2.85
3408 4159 5.907391 CGGCATATCCAAAAATTCGACTTAC 59.093 40.000 0.00 0.00 34.01 2.34
3409 4160 5.587043 ACGGCATATCCAAAAATTCGACTTA 59.413 36.000 0.00 0.00 34.01 2.24
3410 4161 4.398044 ACGGCATATCCAAAAATTCGACTT 59.602 37.500 0.00 0.00 34.01 3.01
3411 4162 3.945285 ACGGCATATCCAAAAATTCGACT 59.055 39.130 0.00 0.00 34.01 4.18
3412 4163 4.287238 ACGGCATATCCAAAAATTCGAC 57.713 40.909 0.00 0.00 34.01 4.20
3413 4164 4.495019 CGAACGGCATATCCAAAAATTCGA 60.495 41.667 0.00 0.00 38.88 3.71
3414 4165 3.723764 CGAACGGCATATCCAAAAATTCG 59.276 43.478 0.00 0.00 34.01 3.34
3415 4166 4.668289 ACGAACGGCATATCCAAAAATTC 58.332 39.130 0.00 0.00 34.01 2.17
3416 4167 4.439563 GGACGAACGGCATATCCAAAAATT 60.440 41.667 1.79 0.00 34.01 1.82
3417 4168 3.066203 GGACGAACGGCATATCCAAAAAT 59.934 43.478 1.79 0.00 34.01 1.82
3418 4169 2.420722 GGACGAACGGCATATCCAAAAA 59.579 45.455 1.79 0.00 34.01 1.94
3419 4170 2.011222 GGACGAACGGCATATCCAAAA 58.989 47.619 1.79 0.00 34.01 2.44
3420 4171 1.208535 AGGACGAACGGCATATCCAAA 59.791 47.619 1.79 0.00 34.01 3.28
3421 4172 0.828022 AGGACGAACGGCATATCCAA 59.172 50.000 1.79 0.00 34.01 3.53
3422 4173 0.387929 GAGGACGAACGGCATATCCA 59.612 55.000 1.79 0.00 34.01 3.41
3423 4174 0.319641 GGAGGACGAACGGCATATCC 60.320 60.000 1.79 2.69 0.00 2.59
3424 4175 3.196613 GGAGGACGAACGGCATATC 57.803 57.895 1.79 0.00 0.00 1.63
3488 4239 0.179073 CCCACTCGGATTAGGCAGTG 60.179 60.000 0.00 0.00 36.75 3.66
3504 4255 6.209026 AGGGGCTTTTAATATTTGATTCCCA 58.791 36.000 13.37 0.00 32.33 4.37
3529 4280 1.826327 CGGCATTTTAAGCGGATGTG 58.174 50.000 0.00 0.00 34.65 3.21
3530 4281 0.100503 GCGGCATTTTAAGCGGATGT 59.899 50.000 0.00 0.00 34.65 3.06
3532 4283 0.381801 CTGCGGCATTTTAAGCGGAT 59.618 50.000 1.75 0.00 38.17 4.18
3535 4286 3.679262 GCTGCGGCATTTTAAGCG 58.321 55.556 14.08 0.00 38.54 4.68
3576 4327 2.045926 CCAGGAACAAGGCGGAGG 60.046 66.667 0.00 0.00 0.00 4.30
3577 4328 0.955919 GAACCAGGAACAAGGCGGAG 60.956 60.000 0.00 0.00 0.00 4.63
3578 4329 1.072505 GAACCAGGAACAAGGCGGA 59.927 57.895 0.00 0.00 0.00 5.54
3579 4330 2.325082 CGAACCAGGAACAAGGCGG 61.325 63.158 0.00 0.00 0.00 6.13
3580 4331 2.325082 CCGAACCAGGAACAAGGCG 61.325 63.158 0.00 0.00 0.00 5.52
3581 4332 2.626780 GCCGAACCAGGAACAAGGC 61.627 63.158 0.00 0.00 36.08 4.35
3582 4333 1.971695 GGCCGAACCAGGAACAAGG 60.972 63.158 0.00 0.00 38.86 3.61
3583 4334 0.537371 AAGGCCGAACCAGGAACAAG 60.537 55.000 0.00 0.00 43.14 3.16
3584 4335 0.106419 AAAGGCCGAACCAGGAACAA 60.106 50.000 0.00 0.00 43.14 2.83
3585 4336 0.766131 TAAAGGCCGAACCAGGAACA 59.234 50.000 0.00 0.00 43.14 3.18
3594 4345 1.435577 GCGAAACTCTAAAGGCCGAA 58.564 50.000 0.00 0.00 0.00 4.30
3608 4359 2.754946 AAGTATTGGACGAGGCGAAA 57.245 45.000 0.00 0.00 0.00 3.46
3613 4364 4.865365 GTGAGAAGAAAGTATTGGACGAGG 59.135 45.833 0.00 0.00 0.00 4.63
3614 4365 5.346281 GTGTGAGAAGAAAGTATTGGACGAG 59.654 44.000 0.00 0.00 0.00 4.18
3617 4368 6.861065 TTGTGTGAGAAGAAAGTATTGGAC 57.139 37.500 0.00 0.00 0.00 4.02
3635 4386 9.553064 TGCAATTAAGGTAAATCAATTTTGTGT 57.447 25.926 0.00 0.00 0.00 3.72
3653 4404 6.673106 TGTAAGTTCGCTGAATTGCAATTAA 58.327 32.000 24.15 16.53 0.00 1.40
3742 6085 2.831685 ATGTGGAGCTTGTCGTAACA 57.168 45.000 0.00 0.00 0.00 2.41
3794 6137 7.855904 GGAGCAAACGTAATATCAAGTTATTGG 59.144 37.037 0.00 0.00 37.02 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.